npm - copper3d - Versions diffs - 3.4.4 → 3.4.6 - Mend

copper3d 3.4.4 → 3.4.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (14) hide show

package/dist/Utils/segmentation/core/MarchingSquares.d.ts +9 -1
package/dist/Utils/segmentation/core/MarchingSquares.js +42 -1
package/dist/Utils/segmentation/core/MarchingSquares.js.map +1 -1
package/dist/Utils/segmentation/tools/DrawingTool.d.ts +9 -0
package/dist/Utils/segmentation/tools/DrawingTool.js +32 -2
package/dist/Utils/segmentation/tools/DrawingTool.js.map +1 -1
package/dist/bundle.esm.js +75 -4
package/dist/bundle.umd.js +75 -4
package/dist/index.d.ts +1 -1
package/dist/index.js +1 -1
package/dist/types/Utils/segmentation/core/MarchingSquares.d.ts +9 -1
package/dist/types/Utils/segmentation/tools/DrawingTool.d.ts +9 -0
package/dist/types/index.d.ts +1 -1
package/package.json +1 -1

package/dist/Utils/segmentation/core/MarchingSquares.d.ts CHANGED Viewed

@@ -35,10 +35,18 @@ export interface ContourBBox {
 /** A single polygon's vertices in voxel-space coordinates. */
 export type ContourPolygon = ReadonlyArray<readonly [number, number]>;
 /**
- * Emit all per-cell polygons covering the voxels where `labels === targetLabel`.
+ * Emit polygons covering the voxels where `labels === targetLabel`.
  * Pure geometry function — no Canvas dependency. Consumers can build a Path2D
  * (see {@link extractLabelContours}) or walk the vertex arrays directly
  * (tests, export, stroke rendering).
+ *
+ * Boundary cells (marching-squares cases 1–14) emit their cut polygon as
+ * usual. Solid interior (case 15) is **coalesced into horizontal run-length
+ * rectangles** instead of one unit square per cell, collapsing the subpath
+ * count from O(area) to ≈ O(perimeter + rows). The filled region is
+ * pixel-identical (contiguous full-cell squares tile exactly into a rectangle
+ * with the same TL→TR→BR→BL winding), which is what keeps slice-scrubbing
+ * fast on large masks without changing the rendered silhouette.
  */
 export declare function extractLabelPolygons(labels: Uint8Array, width: number, height: number, targetLabel: number, stride?: number, channelOffset?: number, bbox?: ContourBBox): ContourPolygon[];
 /**

package/dist/Utils/segmentation/core/MarchingSquares.js CHANGED Viewed

@@ -60,10 +60,18 @@ const CELL_POLYGONS = [
     /* 15 (full)  */ [[[0, 0], [1, 0], [1, 1], [0, 1]]],
 ];
 /**
- * Emit all per-cell polygons covering the voxels where `labels === targetLabel`.
+ * Emit polygons covering the voxels where `labels === targetLabel`.
  * Pure geometry function — no Canvas dependency. Consumers can build a Path2D
  * (see {@link extractLabelContours}) or walk the vertex arrays directly
  * (tests, export, stroke rendering).
+ *
+ * Boundary cells (marching-squares cases 1–14) emit their cut polygon as
+ * usual. Solid interior (case 15) is **coalesced into horizontal run-length
+ * rectangles** instead of one unit square per cell, collapsing the subpath
+ * count from O(area) to ≈ O(perimeter + rows). The filled region is
+ * pixel-identical (contiguous full-cell squares tile exactly into a rectangle
+ * with the same TL→TR→BR→BL winding), which is what keeps slice-scrubbing
+ * fast on large masks without changing the rendered silhouette.
  */
 export function extractLabelPolygons(labels, width, height, targetLabel, stride = 1, channelOffset = 0, bbox) {
     var _a, _b, _c, _d;
@@ -85,7 +93,25 @@ export function extractLabelPolygons(labels, width, height, targetLabel, stride
     // map to voxel-square CENTERS in render space. Voxel (i, j) occupies
     // render square [i, i+1] × [j, j+1]; its center is (i+0.5, j+0.5).
     const SHIFT = 0.5;
+    // Emit a single rectangle covering a contiguous run of full (code 15)
+    // cells [runStart .. runEnd] on row j. A full cell i covers render square
+    // [i+0.5, i+1.5] × [j+0.5, j+1.5]; consecutive full cells tile perfectly,
+    // so the run is pixel-identical to the per-cell squares it replaces.
+    // Vertices use the same TL→TR→BR→BL (CCW screen-space) winding as the
+    // case-15 unit square, so the nonzero fill matches at shared edges.
+    const pushFullRun = (runStart, runEnd, j) => {
+        const x0 = runStart + SHIFT;
+        const x1 = runEnd + 1 + SHIFT;
+        const y0 = j + SHIFT;
+        const y1 = j + 1 + SHIFT;
+        out.push([[x0, y0], [x1, y0], [x1, y1], [x0, y1]]);
+    };
     for (let j = j0; j < j1; j++) {
+        // Index where the current contiguous run of full (code 15) cells began,
+        // or -1 when no run is open. Coalescing the solid interior into row runs
+        // drops the per-cell square count from O(area) to O(rows + perimeter),
+        // which is what keeps fast slice-scrubbing smooth on large masks.
+        let runStart = -1;
         for (let i = i0; i < i1; i++) {
             const tl = sample(i, j);
             const tr = sample(i + 1, j);
@@ -95,6 +121,17 @@ export function extractLabelPolygons(labels, width, height, targetLabel, stride
                 (tr ? 4 : 0) |
                 (br ? 2 : 0) |
                 (bl ? 1 : 0);
+            if (code === 15) {
+                // Extend (or open) the current full-cell run; defer emission.
+                if (runStart === -1)
+                    runStart = i;
+                continue;
+            }
+            // Non-full cell ends any open run — flush it as one rectangle.
+            if (runStart !== -1) {
+                pushFullRun(runStart, i - 1, j);
+                runStart = -1;
+            }
             if (code === 0)
                 continue;
             const polygons = CELL_POLYGONS[code];
@@ -107,6 +144,10 @@ export function extractLabelPolygons(labels, width, height, targetLabel, stride
                 out.push(abs);
             }
         }
+        // Flush a run that reached the end of the row (last visited cell is i1-1).
+        if (runStart !== -1) {
+            pushFullRun(runStart, i1 - 1, j);
+        }
     }
     return out;
 }

package/dist/Utils/segmentation/core/MarchingSquares.js.map CHANGED Viewed

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1	+ {"version":3,"file":"MarchingSquares.js","sourceRoot":"","sources":["../../../../src/Utils/segmentation/core/MarchingSquares.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AAIH;;;;;;;;;;;;GAYG;AACH,MAAM,aAAa,GAAqC;IACtD,gBAAgB,CAAc,EAAE;IAChC,gBAAgB,CAAc,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC5D,gBAAgB,CAAc,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC5D,gBAAgB,CAAc,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IACpE,gBAAgB,CAAc,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;IAC5D,uBAAuB,CAAO;QAC5B,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;QAC5B,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;KAC7B;IACD,gBAAgB,CAAc,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;IACpE,wBAAwB,CAAM,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;IAC5E,gBAAgB,CAAc,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;IAC5D,gBAAgB,CAAc,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IACpE,uBAAuB,CAAO;QAC5B,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;QAC5B,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;KAC7B;IACD,wBAAwB,CAAM,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC5E,gBAAgB,CAAc,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;IACpE,wBAAwB,CAAM,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC5E,wBAAwB,CAAM,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;IAC5E,gBAAgB,CAAc,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;CACjE,CAAC;AAgBF;;;;;;;;;;;;;GAaG;AACH,MAAM,UAAU,oBAAoB,CAClC,MAAkB,EAClB,KAAa,EACb,MAAc,EACd,WAAmB,EACnB,SAAiB,CAAC,EAClB,gBAAwB,CAAC,EACzB,IAAkB;;IAElB,MAAM,GAAG,GAAqB,EAAE,CAAC;IAEjC,MAAM,GAAG,GAAG,CAAC,MAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,EAAE,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAC;IAChC,MAAM,GAAG,GAAG,CAAC,MAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,EAAE,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAC;IAChC,MAAM,GAAG,GAAG,MAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,EAAE,mCAAI,KAAK,CAAC;IAC9B,MAAM,GAAG,GAAG,MAAA,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,EAAE,mCAAI,MAAM,CAAC;IAE/B,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IAC7B,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IAC7B,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;IAChC,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC;IAEjC,MAAM,MAAM,GAAG,CAAC,CAAS,EAAE,CAAS,EAAW,EAAE;QAC/C,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,KAAK,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,MAAM;YAAE,OAAO,KAAK,CAAC;QAC9D,OAAO,MAAM,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC,GAAG,MAAM,GAAG,aAAa,CAAC,KAAK,WAAW,CAAC;IAC1E,CAAC,CAAC;IAEF,0EAA0E;IAC1E,qEAAqE;IACrE,mEAAmE;IACnE,MAAM,KAAK,GAAG,GAAG,CAAC;IAElB,sEAAsE;IACtE,0EAA0E;IAC1E,0EAA0E;IAC1E,qEAAqE;IACrE,sEAAsE;IACtE,oEAAoE;IACpE,MAAM,WAAW,GAAG,CAAC,QAAgB,EAAE,MAAc,EAAE,CAAS,EAAQ,EAAE;QACxE,MAAM,EAAE,GAAG,QAAQ,GAAG,KAAK,CAAC;QAC5B,MAAM,EAAE,GAAG,MAAM,GAAG,CAAC,GAAG,KAAK,CAAC;QAC9B,MAAM,EAAE,GAAG,CAAC,GAAG,KAAK,CAAC;QACrB,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC;QACzB,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;IACrD,CAAC,CAAC;IAEF,KAAK,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;QAC5B,wEAAwE;QACxE,yEAAyE;QACzE,uEAAuE;QACvE,kEAAkE;QAClE,IAAI,QAAQ,GAAG,CAAC,CAAC,CAAC;QAElB,KAAK,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC5B,MAAM,EAAE,GAAG,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YACxB,MAAM,EAAE,GAAG,MAAM,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;YAC5B,MAAM,EAAE,GAAG,MAAM,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;YAChC,MAAM,EAAE,GAAG,MAAM,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;YAE5B,MAAM,IAAI,GACR,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;gBACZ,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;gBACZ,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC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package/dist/Utils/segmentation/tools/DrawingTool.d.ts CHANGED Viewed

@@ -94,6 +94,15 @@ export declare class DrawingTool extends BaseTool {
      * then composite all layers to master.
      */
     private refreshLayerFromVolume;
+    /**
+     * Notify the backend of the brush stroke by firing onMaskChanged for the
+     * current slice. Brush writes voxels straight into the MaskVolume (no canvas
+     * bake), so we read the authoritative slice back from the volume — mirrors
+     * SphereBrushTool.refreshDisplay's notify path. Brush only ever touches the
+     * current view slice (canvasToVoxel3D fixes the slice axis), so a single
+     * slice notification is sufficient.
+     */
+    private notifyMaskChanged;
     /** Capture pre-draw slice snapshot for undo */
     private capturePreDrawSnapshot;
     /** Push delta to UndoManager after drawing completes */

package/dist/Utils/segmentation/tools/DrawingTool.js CHANGED Viewed

@@ -145,9 +145,15 @@ export class DrawingTool extends BaseTool {
                 this.refreshLayerFromVolume();
             }
             else {
-                // Brush mode: voxels already written during mousemove
-                // Just re-render final state and composite
+                // Brush mode: voxels already written directly into the MaskVolume
+                // during mousemove, so no canvas→voxel bake (syncLayerSliceData) is
+                // needed. But we MUST still notify the backend — unlike pencil/eraser
+                // (which go through syncLayerSliceData) the brush path never fires
+                // onMaskChanged, so brush strokes were silently never persisted via
+                // useReplaceMask. Re-render the final state, then fire onMaskChanged
+                // for the current slice (same pattern as SphereBrushTool.refreshDisplay).
                 this.refreshLayerFromVolume();
+                this.notifyMaskChanged();
             }
         }
         else {
@@ -405,6 +411,30 @@ export class DrawingTool extends BaseTool {
         this.callbacks.compositeAllLayers();
         this.ctx.protectedData.mainPreSlices.mesh.material.map.needsUpdate = true;
     }
+    /**
+     * Notify the backend of the brush stroke by firing onMaskChanged for the
+     * current slice. Brush writes voxels straight into the MaskVolume (no canvas
+     * bake), so we read the authoritative slice back from the volume — mirrors
+     * SphereBrushTool.refreshDisplay's notify path. Brush only ever touches the
+     * current view slice (canvasToVoxel3D fixes the slice axis), so a single
+     * slice notification is sufficient.
+     */
+    notifyMaskChanged() {
+        if (this.ctx.nrrd_states.flags.loadingMaskData)
+            return;
+        try {
+            const layer = this.ctx.gui_states.layerChannel.layer;
+            const vol = this.callbacks.getVolumeForLayer(layer);
+            const channel = this.ctx.gui_states.layerChannel.activeChannel || 1;
+            const axis = this.ctx.protectedData.axis;
+            const sliceIndex = this.ctx.nrrd_states.view.currentSliceIndex;
+            const { data: sliceData, width, height } = vol.getSliceUint8(sliceIndex, axis);
+            this.ctx.callbacks.onMaskChanged(sliceData, layer, channel, sliceIndex, axis, width, height, false);
+        }
+        catch (_a) {
+            // Volume not ready — skip notification
+        }
+    }
     // ── Private helpers ────────────────────────────────────────
     /** Capture pre-draw slice snapshot for undo */
     capturePreDrawSnapshot() {

package/dist/Utils/segmentation/tools/DrawingTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/bundle.esm.js CHANGED Viewed

@@ -72153,10 +72153,18 @@ const CELL_POLYGONS = [
     /* 15 (full)  */ [[[0, 0], [1, 0], [1, 1], [0, 1]]],
 ];
 /**
- * Emit all per-cell polygons covering the voxels where `labels === targetLabel`.
+ * Emit polygons covering the voxels where `labels === targetLabel`.
  * Pure geometry function — no Canvas dependency. Consumers can build a Path2D
  * (see {@link extractLabelContours}) or walk the vertex arrays directly
  * (tests, export, stroke rendering).
+ *
+ * Boundary cells (marching-squares cases 1–14) emit their cut polygon as
+ * usual. Solid interior (case 15) is **coalesced into horizontal run-length
+ * rectangles** instead of one unit square per cell, collapsing the subpath
+ * count from O(area) to ≈ O(perimeter + rows). The filled region is
+ * pixel-identical (contiguous full-cell squares tile exactly into a rectangle
+ * with the same TL→TR→BR→BL winding), which is what keeps slice-scrubbing
+ * fast on large masks without changing the rendered silhouette.
  */
 function extractLabelPolygons(labels, width, height, targetLabel, stride = 1, channelOffset = 0, bbox) {
     var _a, _b, _c, _d;
@@ -72178,7 +72186,25 @@ function extractLabelPolygons(labels, width, height, targetLabel, stride = 1, ch
     // map to voxel-square CENTERS in render space. Voxel (i, j) occupies
     // render square [i, i+1] × [j, j+1]; its center is (i+0.5, j+0.5).
     const SHIFT = 0.5;
+    // Emit a single rectangle covering a contiguous run of full (code 15)
+    // cells [runStart .. runEnd] on row j. A full cell i covers render square
+    // [i+0.5, i+1.5] × [j+0.5, j+1.5]; consecutive full cells tile perfectly,
+    // so the run is pixel-identical to the per-cell squares it replaces.
+    // Vertices use the same TL→TR→BR→BL (CCW screen-space) winding as the
+    // case-15 unit square, so the nonzero fill matches at shared edges.
+    const pushFullRun = (runStart, runEnd, j) => {
+        const x0 = runStart + SHIFT;
+        const x1 = runEnd + 1 + SHIFT;
+        const y0 = j + SHIFT;
+        const y1 = j + 1 + SHIFT;
+        out.push([[x0, y0], [x1, y0], [x1, y1], [x0, y1]]);
+    };
     for (let j = j0; j < j1; j++) {
+        // Index where the current contiguous run of full (code 15) cells began,
+        // or -1 when no run is open. Coalescing the solid interior into row runs
+        // drops the per-cell square count from O(area) to O(rows + perimeter),
+        // which is what keeps fast slice-scrubbing smooth on large masks.
+        let runStart = -1;
         for (let i = i0; i < i1; i++) {
             const tl = sample(i, j);
             const tr = sample(i + 1, j);
@@ -72188,6 +72214,17 @@ function extractLabelPolygons(labels, width, height, targetLabel, stride = 1, ch
                 (tr ? 4 : 0) |
                 (br ? 2 : 0) |
                 (bl ? 1 : 0);
+            if (code === 15) {
+                // Extend (or open) the current full-cell run; defer emission.
+                if (runStart === -1)
+                    runStart = i;
+                continue;
+            }
+            // Non-full cell ends any open run — flush it as one rectangle.
+            if (runStart !== -1) {
+                pushFullRun(runStart, i - 1, j);
+                runStart = -1;
+            }
             if (code === 0)
                 continue;
             const polygons = CELL_POLYGONS[code];
@@ -72200,6 +72237,10 @@ function extractLabelPolygons(labels, width, height, targetLabel, stride = 1, ch
                 out.push(abs);
             }
         }
+        // Flush a run that reached the end of the row (last visited cell is i1-1).
+        if (runStart !== -1) {
+            pushFullRun(runStart, i1 - 1, j);
+        }
     }
     return out;
 }
@@ -74994,9 +75035,15 @@ class DrawingTool extends BaseTool {
                 this.refreshLayerFromVolume();
             }
             else {
-                // Brush mode: voxels already written during mousemove
-                // Just re-render final state and composite
+                // Brush mode: voxels already written directly into the MaskVolume
+                // during mousemove, so no canvas→voxel bake (syncLayerSliceData) is
+                // needed. But we MUST still notify the backend — unlike pencil/eraser
+                // (which go through syncLayerSliceData) the brush path never fires
+                // onMaskChanged, so brush strokes were silently never persisted via
+                // useReplaceMask. Re-render the final state, then fire onMaskChanged
+                // for the current slice (same pattern as SphereBrushTool.refreshDisplay).
                 this.refreshLayerFromVolume();
+                this.notifyMaskChanged();
             }
         }
         else {
@@ -75254,6 +75301,30 @@ class DrawingTool extends BaseTool {
         this.callbacks.compositeAllLayers();
         this.ctx.protectedData.mainPreSlices.mesh.material.map.needsUpdate = true;
     }
+    /**
+     * Notify the backend of the brush stroke by firing onMaskChanged for the
+     * current slice. Brush writes voxels straight into the MaskVolume (no canvas
+     * bake), so we read the authoritative slice back from the volume — mirrors
+     * SphereBrushTool.refreshDisplay's notify path. Brush only ever touches the
+     * current view slice (canvasToVoxel3D fixes the slice axis), so a single
+     * slice notification is sufficient.
+     */
+    notifyMaskChanged() {
+        if (this.ctx.nrrd_states.flags.loadingMaskData)
+            return;
+        try {
+            const layer = this.ctx.gui_states.layerChannel.layer;
+            const vol = this.callbacks.getVolumeForLayer(layer);
+            const channel = this.ctx.gui_states.layerChannel.activeChannel || 1;
+            const axis = this.ctx.protectedData.axis;
+            const sliceIndex = this.ctx.nrrd_states.view.currentSliceIndex;
+            const { data: sliceData, width, height } = vol.getSliceUint8(sliceIndex, axis);
+            this.ctx.callbacks.onMaskChanged(sliceData, layer, channel, sliceIndex, axis, width, height, false);
+        }
+        catch (_a) {
+            // Volume not ready — skip notification
+        }
+    }
     // ── Private helpers ────────────────────────────────────────
     /** Capture pre-draw slice snapshot for undo */
     capturePreDrawSnapshot() {
@@ -79409,7 +79480,7 @@ function evaluateElement(element, weights) {
 }
 // import * as kiwrious from "copper3d_plugin_heart_k";
-const REVISION = "v3.4.4-beta";
+const REVISION = "v3.4.6-beta";
 console.log(`%cCopper3D Visualisation %cBeta:${REVISION}`, "padding: 3px;color:white; background:#023047", "padding: 3px;color:white; background:#f50a25");
 export { CHANNEL_COLORS, CHANNEL_HEX_COLORS, CameraViewPoint, Copper3dTrackballControls, GaussianSmoother, MeshNodeTool, NrrdTools, REVISION, addBoxHelper, addLabelToScene, configKiwriousHeart, convert3DPostoScreenPos, convertScreenPosto3DPos, copperMScene, copperMSceneRenderer, copperRenderer, copperRendererOnDemond, copperScene, copperSceneOnDemond, createTexture2D_NRRD, fullScreenListenner, kiwrious, loading, removeGuiFolderChilden, rgbaToCss, rgbaToHex, setHDRFilePath, throttle };

package/dist/bundle.umd.js CHANGED Viewed

@@ -72161,10 +72161,18 @@ void main() {
 	    /* 15 (full)  */ [[[0, 0], [1, 0], [1, 1], [0, 1]]],
 	];
 	/**
-	 * Emit all per-cell polygons covering the voxels where `labels === targetLabel`.
+	 * Emit polygons covering the voxels where `labels === targetLabel`.
 	 * Pure geometry function — no Canvas dependency. Consumers can build a Path2D
 	 * (see {@link extractLabelContours}) or walk the vertex arrays directly
 	 * (tests, export, stroke rendering).
+	 *
+	 * Boundary cells (marching-squares cases 1–14) emit their cut polygon as
+	 * usual. Solid interior (case 15) is **coalesced into horizontal run-length
+	 * rectangles** instead of one unit square per cell, collapsing the subpath
+	 * count from O(area) to ≈ O(perimeter + rows). The filled region is
+	 * pixel-identical (contiguous full-cell squares tile exactly into a rectangle
+	 * with the same TL→TR→BR→BL winding), which is what keeps slice-scrubbing
+	 * fast on large masks without changing the rendered silhouette.
 	 */
 	function extractLabelPolygons(labels, width, height, targetLabel, stride = 1, channelOffset = 0, bbox) {
 	    var _a, _b, _c, _d;
@@ -72186,7 +72194,25 @@ void main() {
 	    // map to voxel-square CENTERS in render space. Voxel (i, j) occupies
 	    // render square [i, i+1] × [j, j+1]; its center is (i+0.5, j+0.5).
 	    const SHIFT = 0.5;
+	    // Emit a single rectangle covering a contiguous run of full (code 15)
+	    // cells [runStart .. runEnd] on row j. A full cell i covers render square
+	    // [i+0.5, i+1.5] × [j+0.5, j+1.5]; consecutive full cells tile perfectly,
+	    // so the run is pixel-identical to the per-cell squares it replaces.
+	    // Vertices use the same TL→TR→BR→BL (CCW screen-space) winding as the
+	    // case-15 unit square, so the nonzero fill matches at shared edges.
+	    const pushFullRun = (runStart, runEnd, j) => {
+	        const x0 = runStart + SHIFT;
+	        const x1 = runEnd + 1 + SHIFT;
+	        const y0 = j + SHIFT;
+	        const y1 = j + 1 + SHIFT;
+	        out.push([[x0, y0], [x1, y0], [x1, y1], [x0, y1]]);
+	    };
 	    for (let j = j0; j < j1; j++) {
+	        // Index where the current contiguous run of full (code 15) cells began,
+	        // or -1 when no run is open. Coalescing the solid interior into row runs
+	        // drops the per-cell square count from O(area) to O(rows + perimeter),
+	        // which is what keeps fast slice-scrubbing smooth on large masks.
+	        let runStart = -1;
 	        for (let i = i0; i < i1; i++) {
 	            const tl = sample(i, j);
 	            const tr = sample(i + 1, j);
@@ -72196,6 +72222,17 @@ void main() {
 	                (tr ? 4 : 0) |
 	                (br ? 2 : 0) |
 	                (bl ? 1 : 0);
+	            if (code === 15) {
+	                // Extend (or open) the current full-cell run; defer emission.
+	                if (runStart === -1)
+	                    runStart = i;
+	                continue;
+	            }
+	            // Non-full cell ends any open run — flush it as one rectangle.
+	            if (runStart !== -1) {
+	                pushFullRun(runStart, i - 1, j);
+	                runStart = -1;
+	            }
 	            if (code === 0)
 	                continue;
 	            const polygons = CELL_POLYGONS[code];
@@ -72208,6 +72245,10 @@ void main() {
 	                out.push(abs);
 	            }
 	        }
+	        // Flush a run that reached the end of the row (last visited cell is i1-1).
+	        if (runStart !== -1) {
+	            pushFullRun(runStart, i1 - 1, j);
+	        }
 	    }
 	    return out;
 	}
@@ -75002,9 +75043,15 @@ void main() {
 	                this.refreshLayerFromVolume();
 	            }
 	            else {
-	                // Brush mode: voxels already written during mousemove
-	                // Just re-render final state and composite
+	                // Brush mode: voxels already written directly into the MaskVolume
+	                // during mousemove, so no canvas→voxel bake (syncLayerSliceData) is
+	                // needed. But we MUST still notify the backend — unlike pencil/eraser
+	                // (which go through syncLayerSliceData) the brush path never fires
+	                // onMaskChanged, so brush strokes were silently never persisted via
+	                // useReplaceMask. Re-render the final state, then fire onMaskChanged
+	                // for the current slice (same pattern as SphereBrushTool.refreshDisplay).
 	                this.refreshLayerFromVolume();
+	                this.notifyMaskChanged();
 	            }
 	        }
 	        else {
@@ -75262,6 +75309,30 @@ void main() {
 	        this.callbacks.compositeAllLayers();
 	        this.ctx.protectedData.mainPreSlices.mesh.material.map.needsUpdate = true;
 	    }
+	    /**
+	     * Notify the backend of the brush stroke by firing onMaskChanged for the
+	     * current slice. Brush writes voxels straight into the MaskVolume (no canvas
+	     * bake), so we read the authoritative slice back from the volume — mirrors
+	     * SphereBrushTool.refreshDisplay's notify path. Brush only ever touches the
+	     * current view slice (canvasToVoxel3D fixes the slice axis), so a single
+	     * slice notification is sufficient.
+	     */
+	    notifyMaskChanged() {
+	        if (this.ctx.nrrd_states.flags.loadingMaskData)
+	            return;
+	        try {
+	            const layer = this.ctx.gui_states.layerChannel.layer;
+	            const vol = this.callbacks.getVolumeForLayer(layer);
+	            const channel = this.ctx.gui_states.layerChannel.activeChannel || 1;
+	            const axis = this.ctx.protectedData.axis;
+	            const sliceIndex = this.ctx.nrrd_states.view.currentSliceIndex;
+	            const { data: sliceData, width, height } = vol.getSliceUint8(sliceIndex, axis);
+	            this.ctx.callbacks.onMaskChanged(sliceData, layer, channel, sliceIndex, axis, width, height, false);
+	        }
+	        catch (_a) {
+	            // Volume not ready — skip notification
+	        }
+	    }
 	    // ── Private helpers ────────────────────────────────────────
 	    /** Capture pre-draw slice snapshot for undo */
 	    capturePreDrawSnapshot() {
@@ -79417,7 +79488,7 @@ void main() {
 	}
 	// import * as kiwrious from "copper3d_plugin_heart_k";
-	const REVISION = "v3.4.4-beta";
+	const REVISION = "v3.4.6-beta";
 	console.log(`%cCopper3D Visualisation %cBeta:${REVISION}`, "padding: 3px;color:white; background:#023047", "padding: 3px;color:white; background:#f50a25");
 	exports.CHANNEL_COLORS = CHANNEL_COLORS;

package/dist/index.d.ts CHANGED Viewed

@@ -25,6 +25,6 @@ import type { ToolMode, IAnnotationCallbacks } from "./Utils/segmentation/core/t
 import { CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss } from "./Utils/segmentation/core/index";
 import type { LayerId, ChannelValue } from "./Utils/segmentation/core/index";
 import "./css/style.css";
-export declare const REVISION = "v3.4.4-beta";
+export declare const REVISION = "v3.4.6-beta";
 export { copperRenderer, copperRendererOnDemond, copperMSceneRenderer, setHDRFilePath, addLabelToScene, convert3DPostoScreenPos, convertScreenPosto3DPos, addBoxHelper, fullScreenListenner, configKiwriousHeart, copperScene, copperSceneOnDemond, copperMScene, CameraViewPoint, kiwrious, NrrdTools, loading, Copper3dTrackballControls, createTexture2D_NRRD, MeshNodeTool, throttle, removeGuiFolderChilden, CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss, GaussianSmoother, };
 export type { positionType, screenPosType, optsType, nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, IPaintImage, exportPaintImageType, IOptVTKLoader, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, NrrdState, GuiState, IGuiMeta, ToolMode, IAnnotationCallbacks, LayerId, ChannelValue, };

package/dist/index.js CHANGED Viewed

@@ -21,7 +21,7 @@ import { MeshNodeTool } from "./Utils/MeshNodeTool";
 import { removeGuiFolderChilden } from "./Utils/segmentation/coreTools/gui";
 import { CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss } from "./Utils/segmentation/core/index";
 import "./css/style.css";
-export const REVISION = "v3.4.4-beta";
+export const REVISION = "v3.4.6-beta";
 console.log(`%cCopper3D Visualisation %cBeta:${REVISION}`, "padding: 3px;color:white; background:#023047", "padding: 3px;color:white; background:#f50a25");
 export { copperRenderer, copperRendererOnDemond, copperMSceneRenderer, setHDRFilePath, addLabelToScene, convert3DPostoScreenPos, convertScreenPosto3DPos, addBoxHelper, fullScreenListenner, configKiwriousHeart, copperScene, copperSceneOnDemond, copperMScene, CameraViewPoint, kiwrious, NrrdTools, loading, Copper3dTrackballControls, createTexture2D_NRRD, MeshNodeTool, throttle, removeGuiFolderChilden, CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss, GaussianSmoother, };
 //# sourceMappingURL=index.js.map

package/dist/types/Utils/segmentation/core/MarchingSquares.d.ts CHANGED Viewed

@@ -35,10 +35,18 @@ export interface ContourBBox {
 /** A single polygon's vertices in voxel-space coordinates. */
 export type ContourPolygon = ReadonlyArray<readonly [number, number]>;
 /**
- * Emit all per-cell polygons covering the voxels where `labels === targetLabel`.
+ * Emit polygons covering the voxels where `labels === targetLabel`.
  * Pure geometry function — no Canvas dependency. Consumers can build a Path2D
  * (see {@link extractLabelContours}) or walk the vertex arrays directly
  * (tests, export, stroke rendering).
+ *
+ * Boundary cells (marching-squares cases 1–14) emit their cut polygon as
+ * usual. Solid interior (case 15) is **coalesced into horizontal run-length
+ * rectangles** instead of one unit square per cell, collapsing the subpath
+ * count from O(area) to ≈ O(perimeter + rows). The filled region is
+ * pixel-identical (contiguous full-cell squares tile exactly into a rectangle
+ * with the same TL→TR→BR→BL winding), which is what keeps slice-scrubbing
+ * fast on large masks without changing the rendered silhouette.
  */
 export declare function extractLabelPolygons(labels: Uint8Array, width: number, height: number, targetLabel: number, stride?: number, channelOffset?: number, bbox?: ContourBBox): ContourPolygon[];
 /**

package/dist/types/Utils/segmentation/tools/DrawingTool.d.ts CHANGED Viewed

@@ -94,6 +94,15 @@ export declare class DrawingTool extends BaseTool {
      * then composite all layers to master.
      */
     private refreshLayerFromVolume;
+    /**
+     * Notify the backend of the brush stroke by firing onMaskChanged for the
+     * current slice. Brush writes voxels straight into the MaskVolume (no canvas
+     * bake), so we read the authoritative slice back from the volume — mirrors
+     * SphereBrushTool.refreshDisplay's notify path. Brush only ever touches the
+     * current view slice (canvasToVoxel3D fixes the slice axis), so a single
+     * slice notification is sufficient.
+     */
+    private notifyMaskChanged;
     /** Capture pre-draw slice snapshot for undo */
     private capturePreDrawSnapshot;
     /** Push delta to UndoManager after drawing completes */

package/dist/types/index.d.ts CHANGED Viewed

@@ -25,6 +25,6 @@ import type { ToolMode, IAnnotationCallbacks } from "./Utils/segmentation/core/t
 import { CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss } from "./Utils/segmentation/core/index";
 import type { LayerId, ChannelValue } from "./Utils/segmentation/core/index";
 import "./css/style.css";
-export declare const REVISION = "v3.4.4-beta";
+export declare const REVISION = "v3.4.6-beta";
 export { copperRenderer, copperRendererOnDemond, copperMSceneRenderer, setHDRFilePath, addLabelToScene, convert3DPostoScreenPos, convertScreenPosto3DPos, addBoxHelper, fullScreenListenner, configKiwriousHeart, copperScene, copperSceneOnDemond, copperMScene, CameraViewPoint, kiwrious, NrrdTools, loading, Copper3dTrackballControls, createTexture2D_NRRD, MeshNodeTool, throttle, removeGuiFolderChilden, CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss, GaussianSmoother, };
 export type { positionType, screenPosType, optsType, nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, IPaintImage, exportPaintImageType, IOptVTKLoader, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, NrrdState, GuiState, IGuiMeta, ToolMode, IAnnotationCallbacks, LayerId, ChannelValue, };

package/package.json CHANGED Viewed

@@ -1,7 +1,7 @@
 {
   "name": "copper3d",
   "description": "A 3d visualisation package base on threejs provides multiple scenes and Nrrd image load funtion.",
-  "version": "3.4.4",
+  "version": "3.4.6",
   "main": "dist/bundle.umd.js",
   "moudle": "dist/bundle.esm.js",
   "types": "dist/types/index.d.ts",