copper3d 3.4.3 → 3.4.5

package/dist/Utils/segmentation/RenderingUtils.d.ts

@@ -18,6 +18,23 @@ export declare class RenderingUtils {
     private _reusableSliceBuffer;
     private _reusableBufferWidth;
     private _reusableBufferHeight;
+    /**
+     * Per-layer contour cache.
+     *
+     * Caches the *expensive* part of slice rendering — `getSliceUint8` +
+     * `findLabelsInSlice` + `extractLabelContours` (Path2D build) — keyed by
+     * `${axis}:${sliceIndex}:${volume.version}`. The contours live in voxel
+     * coordinates; zoom only changes the `ctx.scale` transform, so on zoom /
+     * recomposite we reuse the cached Path2D and just re-fill, skipping
+     * marching-squares entirely. A volume edit bumps its version → cache miss
+     * → recompute (correct, automatic). Colors and channel visibility are
+     * applied at fill time and intentionally *not* cached, so toggling them
+     * needs no recompute.
+     *
+     * One entry per layer (the current slice). Switching slice/axis or
+     * editing overwrites it.
+     */
+    private _contourCache;
     constructor(state: CanvasState);
     /**
      * Get MaskVolume for a specific layer

package/dist/Utils/segmentation/RenderingUtils.js

@@ -17,6 +17,23 @@ export class RenderingUtils {
         this._reusableSliceBuffer = null;
         this._reusableBufferWidth = 0;
         this._reusableBufferHeight = 0;
+        /**
+         * Per-layer contour cache.
+         *
+         * Caches the *expensive* part of slice rendering — `getSliceUint8` +
+         * `findLabelsInSlice` + `extractLabelContours` (Path2D build) — keyed by
+         * `${axis}:${sliceIndex}:${volume.version}`. The contours live in voxel
+         * coordinates; zoom only changes the `ctx.scale` transform, so on zoom /
+         * recomposite we reuse the cached Path2D and just re-fill, skipping
+         * marching-squares entirely. A volume edit bumps its version → cache miss
+         * → recompute (correct, automatic). Colors and channel visibility are
+         * applied at fill time and intentionally *not* cached, so toggling them
+         * needs no recompute.
+         *
+         * One entry per layer (the current slice). Switching slice/axis or
+         * editing overwrites it.
+         */
+        this._contourCache = new Map();
         this.state = state;
     }
     // ── Volume Accessor Helpers ──────────────────────────────────────
@@ -115,14 +132,27 @@ export class RenderingUtils {
             const volume = this.getVolumeForLayer(layer);
             if (!volume)
                 return;
-            const channelVis = this.state.gui_states.layerChannel.channelVisibility[layer];
-            const slice = volume.getSliceUint8(sliceIndex, axis);
-            const W = slice.width;
-            const H = slice.height;
             const stride = volume.getChannels();
-            const labels = findLabelsInSlice(slice.data, W, H, stride, 0);
-            if (labels.length === 0)
+            const cacheKey = `${axis}:${sliceIndex}:${volume.getVersion()}`;
+            // Cache miss → run the expensive extraction once. Hits (zoom,
+            // recomposite, contrast toggle) skip straight to the fill below.
+            let entry = this._contourCache.get(layer);
+            if (!entry || entry.key !== cacheKey) {
+                const slice = volume.getSliceUint8(sliceIndex, axis);
+                const W = slice.width;
+                const H = slice.height;
+                const labels = findLabelsInSlice(slice.data, W, H, stride, 0);
+                const paths = new Map();
+                for (const lbl of labels) {
+                    paths.set(lbl, extractLabelContours(slice.data, W, H, lbl, stride, 0));
+                }
+                entry = { key: cacheKey, W, H, labels, paths };
+                this._contourCache.set(layer, entry);
+            }
+            if (entry.labels.length === 0)
                 return;
+            const { W, H, labels, paths } = entry;
+            const channelVis = this.state.gui_states.layerChannel.channelVisibility[layer];
             targetCtx.save();
             // Vector fill — imageSmoothingEnabled is irrelevant here, but keep
             // it off to match the rest of the pipeline.
@@ -139,8 +169,10 @@ export class RenderingUtils {
             for (const lbl of labels) {
                 if (channelVis && channelVis[lbl] === false)
                     continue;
+                const path = paths.get(lbl);
+                if (!path)
+                    continue;
                 const color = volume.getChannelColor(lbl);
-                const path = extractLabelContours(slice.data, W, H, lbl, stride, 0);
                 targetCtx.fillStyle =
                     `rgba(${color.r}, ${color.g}, ${color.b}, ${color.a / 255})`;
                 targetCtx.fill(path, 'nonzero');
@@ -158,6 +190,7 @@ export class RenderingUtils {
         this._reusableSliceBuffer = null;
         this._reusableBufferWidth = 0;
         this._reusableBufferHeight = 0;
+        this._contourCache.clear();
     }
     /**
      * Apply the same flip transform used by flipDisplayImageByAxis() to any

package/dist/Utils/segmentation/RenderingUtils.js.map

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package/dist/Utils/segmentation/core/MarchingSquares.d.ts

@@ -35,10 +35,18 @@ export interface ContourBBox {
 /** A single polygon's vertices in voxel-space coordinates. */
 export type ContourPolygon = ReadonlyArray<readonly [number, number]>;
 /**
- * Emit all per-cell polygons covering the voxels where `labels === targetLabel`.
+ * Emit polygons covering the voxels where `labels === targetLabel`.
  * Pure geometry function — no Canvas dependency. Consumers can build a Path2D
  * (see {@link extractLabelContours}) or walk the vertex arrays directly
  * (tests, export, stroke rendering).
+ *
+ * Boundary cells (marching-squares cases 1–14) emit their cut polygon as
+ * usual. Solid interior (case 15) is **coalesced into horizontal run-length
+ * rectangles** instead of one unit square per cell, collapsing the subpath
+ * count from O(area) to ≈ O(perimeter + rows). The filled region is
+ * pixel-identical (contiguous full-cell squares tile exactly into a rectangle
+ * with the same TL→TR→BR→BL winding), which is what keeps slice-scrubbing
+ * fast on large masks without changing the rendered silhouette.
  */
 export declare function extractLabelPolygons(labels: Uint8Array, width: number, height: number, targetLabel: number, stride?: number, channelOffset?: number, bbox?: ContourBBox): ContourPolygon[];
 /**

package/dist/Utils/segmentation/core/MarchingSquares.js

@@ -60,10 +60,18 @@ const CELL_POLYGONS = [
     /* 15 (full)  */ [[[0, 0], [1, 0], [1, 1], [0, 1]]],
 ];
 /**
- * Emit all per-cell polygons covering the voxels where `labels === targetLabel`.
+ * Emit polygons covering the voxels where `labels === targetLabel`.
  * Pure geometry function — no Canvas dependency. Consumers can build a Path2D
  * (see {@link extractLabelContours}) or walk the vertex arrays directly
  * (tests, export, stroke rendering).
+ *
+ * Boundary cells (marching-squares cases 1–14) emit their cut polygon as
+ * usual. Solid interior (case 15) is **coalesced into horizontal run-length
+ * rectangles** instead of one unit square per cell, collapsing the subpath
+ * count from O(area) to ≈ O(perimeter + rows). The filled region is
+ * pixel-identical (contiguous full-cell squares tile exactly into a rectangle
+ * with the same TL→TR→BR→BL winding), which is what keeps slice-scrubbing
+ * fast on large masks without changing the rendered silhouette.
  */
 export function extractLabelPolygons(labels, width, height, targetLabel, stride = 1, channelOffset = 0, bbox) {
     var _a, _b, _c, _d;
@@ -85,7 +93,25 @@ export function extractLabelPolygons(labels, width, height, targetLabel, stride
     // map to voxel-square CENTERS in render space. Voxel (i, j) occupies
     // render square [i, i+1] × [j, j+1]; its center is (i+0.5, j+0.5).
     const SHIFT = 0.5;
+    // Emit a single rectangle covering a contiguous run of full (code 15)
+    // cells [runStart .. runEnd] on row j. A full cell i covers render square
+    // [i+0.5, i+1.5] × [j+0.5, j+1.5]; consecutive full cells tile perfectly,
+    // so the run is pixel-identical to the per-cell squares it replaces.
+    // Vertices use the same TL→TR→BR→BL (CCW screen-space) winding as the
+    // case-15 unit square, so the nonzero fill matches at shared edges.
+    const pushFullRun = (runStart, runEnd, j) => {
+        const x0 = runStart + SHIFT;
+        const x1 = runEnd + 1 + SHIFT;
+        const y0 = j + SHIFT;
+        const y1 = j + 1 + SHIFT;
+        out.push([[x0, y0], [x1, y0], [x1, y1], [x0, y1]]);
+    };
     for (let j = j0; j < j1; j++) {
+        // Index where the current contiguous run of full (code 15) cells began,
+        // or -1 when no run is open. Coalescing the solid interior into row runs
+        // drops the per-cell square count from O(area) to O(rows + perimeter),
+        // which is what keeps fast slice-scrubbing smooth on large masks.
+        let runStart = -1;
         for (let i = i0; i < i1; i++) {
             const tl = sample(i, j);
             const tr = sample(i + 1, j);
@@ -95,6 +121,17 @@ export function extractLabelPolygons(labels, width, height, targetLabel, stride
                 (tr ? 4 : 0) |
                 (br ? 2 : 0) |
                 (bl ? 1 : 0);
+            if (code === 15) {
+                // Extend (or open) the current full-cell run; defer emission.
+                if (runStart === -1)
+                    runStart = i;
+                continue;
+            }
+            // Non-full cell ends any open run — flush it as one rectangle.
+            if (runStart !== -1) {
+                pushFullRun(runStart, i - 1, j);
+                runStart = -1;
+            }
             if (code === 0)
                 continue;
             const polygons = CELL_POLYGONS[code];
@@ -107,6 +144,10 @@ export function extractLabelPolygons(labels, width, height, targetLabel, stride
                 out.push(abs);
             }
         }
+        // Flush a run that reached the end of the row (last visited cell is i1-1).
+        if (runStart !== -1) {
+            pushFullRun(runStart, i1 - 1, j);
+        }
     }
     return out;
 }

package/dist/Utils/segmentation/core/MarchingSquares.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/core/MaskVolume.d.ts

@@ -45,6 +45,17 @@ export declare class MaskVolume {
     private readonly bytesPerSlice;
     /** Per-channel color map used for colored rendering modes. */
     private colorMap;
+    /**
+     * Monotonic data-mutation counter.
+     *
+     * Incremented by every method that mutates voxel data (not color).
+     * Consumers (e.g. the contour cache in RenderingUtils) key cached
+     * derivations on this value so an edit automatically invalidates them —
+     * it is impossible to forget an invalidation point because every write
+     * bumps the version. Color-map changes do **not** bump it (colors are
+     * applied at fill time, never cached).
+     */
+    private version;
     /**
      * Create a new MaskVolume.
      *
@@ -105,6 +116,13 @@ export declare class MaskVolume {
      * @throws {RangeError} If any coordinate is out of bounds.
      */
     setVoxel(x: number, y: number, z: number, value: number, channel?: number): void;
+    /**
+     * Return the current data-mutation version.
+     *
+     * Increments on every voxel write. Use as a cache key so derived data
+     * (e.g. extracted contours) is invalidated whenever the volume changes.
+     */
+    getVersion(): number;
     /**
      * Update the color for a specific label/channel in the color map.
      *

package/dist/Utils/segmentation/core/MaskVolume.js

@@ -47,6 +47,17 @@ export class MaskVolume {
      * @throws {RangeError} If any dimension or the channel count is < 1.
      */
     constructor(width, height, depth, channels = 1, customColorMap) {
+        /**
+         * Monotonic data-mutation counter.
+         *
+         * Incremented by every method that mutates voxel data (not color).
+         * Consumers (e.g. the contour cache in RenderingUtils) key cached
+         * derivations on this value so an edit automatically invalidates them —
+         * it is impossible to forget an invalidation point because every write
+         * bumps the version. Color-map changes do **not** bump it (colors are
+         * applied at fill time, never cached).
+         */
+        this.version = 0;
         if (width < 1 || height < 1 || depth < 1) {
             throw new RangeError(`Dimensions must be ≥ 1, got (${width}, ${height}, ${depth})`);
         }
@@ -136,6 +147,16 @@ export class MaskVolume {
      */
     setVoxel(x, y, z, value, channel = 0) {
         this.data[this.getIndex(x, y, z, channel)] = value;
+        this.version++;
+    }
+    /**
+     * Return the current data-mutation version.
+     *
+     * Increments on every voxel write. Use as a cache key so derived data
+     * (e.g. extracted contours) is invalidated whenever the volume changes.
+     */
+    getVersion() {
+        return this.version;
     }
     // ── Color map management ──────────────────────────────────────────
     /**
@@ -292,6 +313,7 @@ export class MaskVolume {
             throw new Error(`ImageData size mismatch: expected ${expectedW}×${expectedH}, ` +
                 `got ${imageData.width}×${imageData.height}`);
         }
+        this.version++;
         const pixels = imageData.data;
         const { width, height } = this.dims;
         const ch = this.numChannels;
@@ -393,6 +415,7 @@ export class MaskVolume {
             throw new Error(`ImageData size mismatch: expected ${expectedW}×${expectedH}, ` +
                 `got ${imageData.width}×${imageData.height}`);
         }
+        this.version++;
         // Build RGB→channel lookup map for O(1) reverse lookup
         const rgbToChannel = this.buildRgbToChannelMap();
         const pixels = imageData.data;
@@ -657,6 +680,7 @@ export class MaskVolume {
             throw new Error(`Data length mismatch: expected ${this.data.length}, got ${newData.length}`);
         }
         this.data = newData;
+        this.version++;
     }
     /**
      * Create an independent deep copy of this volume.
@@ -696,6 +720,7 @@ export class MaskVolume {
      */
     clear() {
         this.data.fill(0);
+        this.version++;
     }
     /**
      * Check if the volume contains any non-zero voxel data.
@@ -748,6 +773,7 @@ export class MaskVolume {
      */
     clearSlice(sliceIndex, axis = 'z', channel) {
         this.validateSliceIndex(sliceIndex, axis);
+        this.version++;
         const [sliceW, sliceH] = this.getSliceDimensions(axis);
         const volData = this.data;
         const nch = this.numChannels;
@@ -859,6 +885,7 @@ export class MaskVolume {
      */
     setSliceUint8(sliceIndex, data, axis = 'z') {
         this.validateSliceIndex(sliceIndex, axis);
+        this.version++;
         const [sliceW, sliceH] = this.getSliceDimensions(axis);
         const nch = this.numChannels;
         const rowStride = this.dims.width * nch;

package/dist/Utils/segmentation/core/MaskVolume.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/tools/ZoomTool.js

@@ -14,7 +14,30 @@ export class ZoomTool extends BaseTool {
     }
     // ===== Zoom Wheel =====
     configMouseZoomWheel() {
-        let moveDistance = 1;
+        // Coalesce multiple wheel events fired within one frame into a single
+        // resizePaintArea() call via requestAnimationFrame. Each resize triggers
+        // a full display redraw (+ mask recomposite), so without coalescing a
+        // fast scroll fires dozens of these per frame. The accumulation is done
+        // on the logical zoom (sizeFactor) — not the DOM offsetWidth — so deltas
+        // still compound correctly even though the DOM size hasn't updated yet.
+        let rafId = null;
+        let pending = null;
+        const flush = () => {
+            rafId = null;
+            if (!pending)
+                return;
+            const p = pending;
+            pending = null;
+            if (p.recenter) {
+                this.callbacks.resetPaintAreaUIPosition();
+            }
+            else {
+                this.callbacks.resetPaintAreaUIPosition(p.l, p.t);
+            }
+            this.callbacks.resizePaintArea(p.moveDistance);
+            this.callbacks.setIsDrawFalse(1000);
+            this.ctx.nrrd_states.view.sizeFactor = p.moveDistance;
+        };
         return (e) => {
             var _a, _b;
             if ((_a = this.ctx.eventRouter) === null || _a === void 0 ? void 0 : _a.isShiftHeld()) {
@@ -29,36 +52,38 @@ export class ZoomTool extends BaseTool {
             const delta = e.detail ? e.detail > 0 : e.wheelDelta < 0;
             this.ctx.protectedData.isDrawing = true;
             const rect = this.container.getBoundingClientRect();
-            const ratioL = (e.clientX -
-                rect.left -
-                this.mainAreaContainer.offsetLeft -
-                this.ctx.protectedData.canvases.drawingCanvas.offsetLeft) /
-                this.ctx.protectedData.canvases.drawingCanvas.offsetWidth;
-            const ratioT = (e.clientY -
-                rect.top -
-                this.mainAreaContainer.offsetTop -
-                this.ctx.protectedData.canvases.drawingCanvas.offsetTop) /
-                this.ctx.protectedData.canvases.drawingCanvas.offsetHeight;
+            const drawingCanvas = this.ctx.protectedData.canvases.drawingCanvas;
+            const ratioL = (e.clientX - rect.left - this.mainAreaContainer.offsetLeft - drawingCanvas.offsetLeft) /
+                drawingCanvas.offsetWidth;
+            const ratioT = (e.clientY - rect.top - this.mainAreaContainer.offsetTop - drawingCanvas.offsetTop) /
+                drawingCanvas.offsetHeight;
             const ratioDelta = !delta ? 1 + 0.1 : 1 - 0.1;
-            const w = this.ctx.protectedData.canvases.drawingCanvas.offsetWidth * ratioDelta;
-            const h = this.ctx.protectedData.canvases.drawingCanvas.offsetHeight * ratioDelta;
-            const l = Math.round(e.clientX - this.mainAreaContainer.offsetLeft - w * ratioL - rect.left);
-            const t = Math.round(e.clientY - this.mainAreaContainer.offsetTop - h * ratioT - rect.top);
-            moveDistance = w / this.ctx.nrrd_states.image.originWidth;
+            // Compound from the latest pending target (this frame) or the current
+            // committed sizeFactor.
+            const base = pending ? pending.moveDistance : this.ctx.nrrd_states.view.sizeFactor;
+            let moveDistance = base * ratioDelta;
             if (moveDistance > 8) {
+                // Max zoom: original behaviour clamps without re-laying out.
                 moveDistance = 8;
+                this.ctx.nrrd_states.view.sizeFactor = moveDistance;
+                this.callbacks.setIsDrawFalse(1000);
+                return;
             }
-            else if (moveDistance < 1) {
+            if (moveDistance < 1) {
                 moveDistance = 1;
-                this.callbacks.resetPaintAreaUIPosition();
-                this.callbacks.resizePaintArea(moveDistance);
+                pending = { moveDistance, l: 0, t: 0, recenter: true };
             }
             else {
-                this.callbacks.resetPaintAreaUIPosition(l, t);
-                this.callbacks.resizePaintArea(moveDistance);
+                // Target displayed size for this zoom level → keep cursor anchored.
+                const w = this.ctx.nrrd_states.image.originWidth * moveDistance;
+                const h = this.ctx.nrrd_states.image.originHeight * moveDistance;
+                const l = Math.round(e.clientX - this.mainAreaContainer.offsetLeft - w * ratioL - rect.left);
+                const t = Math.round(e.clientY - this.mainAreaContainer.offsetTop - h * ratioT - rect.top);
+                pending = { moveDistance, l, t, recenter: false };
+            }
+            if (rafId === null) {
+                rafId = requestAnimationFrame(flush);
             }
-            this.callbacks.setIsDrawFalse(1000);
-            this.ctx.nrrd_states.view.sizeFactor = moveDistance;
         };
     }
 }