copper3d 3.3.3 → 3.4.1

package/dist/Utils/segmentation/tools/DrawingTool.js

@@ -4,6 +4,10 @@
  * Extracted from DrawToolCore.paintOnCanvas() closure (Phase 3).
  * Handles left-click drawing operations: pencil stroke + fill, brush strokes,
  * eraser, and undo snapshot capture/push.
+ *
+ * Phase B: Brush mode now writes voxels directly during mousemove and
+ * re-renders via marching squares, eliminating the visual "snap" between
+ * the smooth canvas stroke and the voxel-based post-release render.
  */
 import { BaseTool } from "./BaseTool";
 import { switchEraserSize } from "../../utils";
@@ -22,6 +26,8 @@ export class DrawingTool extends BaseTool {
         this.preDrawSlice = null;
         this.preDrawAxis = "z";
         this.preDrawSliceIndex = 0;
+        /** Previous voxel-space position for Bresenham interpolation (brush mode) */
+        this.prevVoxel = null;
         this.callbacks = callbacks;
     }
     /** Whether a draw operation is currently active */
@@ -41,6 +47,7 @@ export class DrawingTool extends BaseTool {
         this.isPainting = false;
         this.drawingLines = [];
         this.clearArcFn = clearArcFn;
+        this.prevVoxel = null;
     }
     /**
      * Called on left-click pointerdown in draw mode.
@@ -68,6 +75,22 @@ export class DrawingTool extends BaseTool {
         this.ctx.nrrd_states.interaction.drawStartPos.y = e.offsetY;
         // Capture pre-draw slice snapshot for undo
         this.capturePreDrawSnapshot();
+        // Brush mode: initialize voxel tracking and write first dot
+        if (!this.ctx.gui_states.mode.pencil && !this.ctx.gui_states.mode.eraser) {
+            const voxel = this.canvasToVoxel3D(e.offsetX, e.offsetY);
+            this.prevVoxel = voxel;
+            try {
+                const vol = this.callbacks.getVolumeForLayer(this.ctx.gui_states.layerChannel.layer);
+                const channel = this.ctx.gui_states.layerChannel.activeChannel || 1;
+                const axis = this.ctx.protectedData.axis;
+                const { rH, rV } = this.getVoxelBrushRadius();
+                this.paintVoxelEllipse(vol, voxel, rH, rV, channel, axis);
+                this.refreshLayerFromVolume();
+            }
+            catch (_a) {
+                // Volume not ready
+            }
+        }
     }
     /**
      * Called on pointermove during an active drawing operation.
@@ -81,10 +104,16 @@ export class DrawingTool extends BaseTool {
                 this.ctx.nrrd_states.flags.stepClear = 1;
                 (_a = this.clearArcFn) === null || _a === void 0 ? void 0 : _a.call(this, e.offsetX, e.offsetY, this.ctx.gui_states.drawing.brushAndEraserSize);
             }
-            else {
+            else if (this.ctx.gui_states.mode.pencil) {
+                // Pencil mode: accumulate points and draw visual lines on canvas
                 this.drawingLines.push({ x: e.offsetX, y: e.offsetY });
                 this.paintOnCanvasLayer(e.offsetX, e.offsetY);
             }
+            else {
+                // Brush mode: write voxels directly + re-render via marching squares
+                this.drawingLines.push({ x: e.offsetX, y: e.offsetY });
+                this.paintBrushVoxelMove(e.offsetX, e.offsetY);
+            }
         }
     }
     /**
@@ -97,11 +126,9 @@ export class DrawingTool extends BaseTool {
         ctx.closePath();
         if (!this.ctx.gui_states.mode.eraser) {
             if (this.ctx.gui_states.mode.pencil) {
-                // Clear only the current layer canvas (NOT master)
+                // Pencil mode: fill polygon then bake to voxels
                 canvas.width = canvas.width;
-                // Redraw previous layer data from volume
                 this.redrawPreviousImageToLayerCtx(ctx);
-                // Draw new pencil strokes on current layer canvas
                 ctx.beginPath();
                 ctx.moveTo(this.drawingLines[0].x, this.drawingLines[0].y);
                 for (let i = 1; i < this.drawingLines.length; i++) {
@@ -111,12 +138,26 @@ export class DrawingTool extends BaseTool {
                 ctx.lineWidth = 1;
                 ctx.fillStyle = this.ctx.gui_states.drawing.fillColor;
                 ctx.fill();
-                // Composite ALL layers to master (not just current layer)
                 this.callbacks.compositeAllLayers();
+                // Pencil still needs canvas→voxel bake
+                this.callbacks.syncLayerSliceData(this.ctx.nrrd_states.view.currentSliceIndex, this.ctx.gui_states.layerChannel.layer);
+                // Re-render from voxels to eliminate pencil snap
+                this.refreshLayerFromVolume();
+            }
+            else {
+                // Brush mode: voxels already written during mousemove
+                // Just re-render final state and composite
+                this.refreshLayerFromVolume();
             }
         }
-        this.callbacks.syncLayerSliceData(this.ctx.nrrd_states.view.currentSliceIndex, this.ctx.gui_states.layerChannel.layer);
+        else {
+            // Eraser mode: still needs canvas→voxel bake
+            this.callbacks.syncLayerSliceData(this.ctx.nrrd_states.view.currentSliceIndex, this.ctx.gui_states.layerChannel.layer);
+            // Re-render from voxels for eraser too
+            this.refreshLayerFromVolume();
+        }
         this.isPainting = false;
+        this.prevVoxel = null;
         // Push undo delta
         this.pushUndoDelta();
     }
@@ -127,6 +168,7 @@ export class DrawingTool extends BaseTool {
      */
     onPointerLeave() {
         this.isPainting = false;
+        this.prevVoxel = null;
         if (!this.leftClicked)
             return false;
         this.leftClicked = false;
@@ -137,11 +179,6 @@ export class DrawingTool extends BaseTool {
     /**
      * Create a self-managing mouseover/mouseout/mousemove handler
      * that tracks brush hover position for the preview circle.
-     *
-     * The returned function should be registered on drawingCanvas for
-     * "mouseover" and "mouseout" events.  It adds/removes a "mousemove"
-     * listener on itself to keep mouseOverX/Y up-to-date while the
-     * cursor is inside the canvas.
      */
     createBrushTrackingHandler() {
         const handler = (e) => {
@@ -165,8 +202,6 @@ export class DrawingTool extends BaseTool {
     }
     /**
      * Render brush circle preview on the drawing context.
-     * Called from the start() render loop when in draw mode and not
-     * actively painting.  Skipped in pencil/eraser mode.
      */
     renderBrushPreview(ctx, width, height) {
         if (this.ctx.gui_states.mode.pencil ||
@@ -181,6 +216,195 @@ export class DrawingTool extends BaseTool {
         ctx.strokeStyle = this.ctx.gui_states.drawing.brushColor;
         ctx.stroke();
     }
+    // ── Brush mode: direct voxel write ────────────────────────────
+    /**
+     * Convert display (zoomed) coordinates to 3D voxel coordinates.
+     * Same logic as SphereBrushTool.canvasToVoxelCenter.
+     */
+    canvasToVoxel3D(displayX, displayY) {
+        const nrrd = this.ctx.nrrd_states;
+        const axis = this.ctx.protectedData.axis;
+        const cw = nrrd.view.changedWidth;
+        const ch = nrrd.view.changedHeight;
+        const sliceIndex = nrrd.view.currentSliceIndex;
+        switch (axis) {
+            case 'z':
+                return {
+                    x: displayX * nrrd.image.nrrd_x_pixel / cw,
+                    y: displayY * nrrd.image.nrrd_y_pixel / ch,
+                    z: sliceIndex,
+                };
+            case 'y':
+                return {
+                    x: displayX * nrrd.image.nrrd_x_pixel / cw,
+                    y: sliceIndex,
+                    z: (ch - displayY) * nrrd.image.nrrd_z_pixel / ch,
+                };
+            case 'x':
+                return {
+                    x: sliceIndex,
+                    y: displayY * nrrd.image.nrrd_y_pixel / ch,
+                    z: displayX * nrrd.image.nrrd_z_pixel / cw,
+                };
+        }
+    }
+    /**
+     * Get voxel-space brush radius for visible axes.
+     * Converts display-pixel brush size to voxel units.
+     */
+    getVoxelBrushRadius() {
+        const nrrd = this.ctx.nrrd_states;
+        const axis = this.ctx.protectedData.axis;
+        const cw = nrrd.view.changedWidth;
+        const ch = nrrd.view.changedHeight;
+        const displayRadius = this.ctx.gui_states.drawing.brushAndEraserSize / 2;
+        switch (axis) {
+            case 'z':
+                return {
+                    rH: displayRadius * nrrd.image.nrrd_x_pixel / cw,
+                    rV: displayRadius * nrrd.image.nrrd_y_pixel / ch,
+                };
+            case 'y':
+                return {
+                    rH: displayRadius * nrrd.image.nrrd_x_pixel / cw,
+                    rV: displayRadius * nrrd.image.nrrd_z_pixel / ch,
+                };
+            case 'x':
+                return {
+                    rH: displayRadius * nrrd.image.nrrd_z_pixel / cw,
+                    rV: displayRadius * nrrd.image.nrrd_y_pixel / ch,
+                };
+        }
+    }
+    /**
+     * Paint a 2D ellipse of voxels on the current slice.
+     * Only the two visible axes are iterated; the slice-direction axis is fixed.
+     */
+    paintVoxelEllipse(vol, center, rH, rV, label, axis) {
+        const dims = vol.getDimensions();
+        switch (axis) {
+            case 'z': {
+                const minX = Math.max(0, Math.floor(center.x - rH));
+                const maxX = Math.min(dims.width - 1, Math.ceil(center.x + rH));
+                const minY = Math.max(0, Math.floor(center.y - rV));
+                const maxY = Math.min(dims.height - 1, Math.ceil(center.y + rV));
+                const z = Math.round(center.z);
+                for (let y = minY; y <= maxY; y++) {
+                    for (let x = minX; x <= maxX; x++) {
+                        const dx = rH > 0 ? (x - center.x) / rH : 0;
+                        const dy = rV > 0 ? (y - center.y) / rV : 0;
+                        if (dx * dx + dy * dy <= 1.0) {
+                            vol.setVoxel(x, y, z, label);
+                        }
+                    }
+                }
+                break;
+            }
+            case 'y': {
+                const minX = Math.max(0, Math.floor(center.x - rH));
+                const maxX = Math.min(dims.width - 1, Math.ceil(center.x + rH));
+                const minZ = Math.max(0, Math.floor(center.z - rV));
+                const maxZ = Math.min(dims.depth - 1, Math.ceil(center.z + rV));
+                const y = Math.round(center.y);
+                for (let z = minZ; z <= maxZ; z++) {
+                    for (let x = minX; x <= maxX; x++) {
+                        const dx = rH > 0 ? (x - center.x) / rH : 0;
+                        const dz = rV > 0 ? (z - center.z) / rV : 0;
+                        if (dx * dx + dz * dz <= 1.0) {
+                            vol.setVoxel(x, y, z, label);
+                        }
+                    }
+                }
+                break;
+            }
+            case 'x': {
+                const minZ = Math.max(0, Math.floor(center.z - rH));
+                const maxZ = Math.min(dims.depth - 1, Math.ceil(center.z + rH));
+                const minY = Math.max(0, Math.floor(center.y - rV));
+                const maxY = Math.min(dims.height - 1, Math.ceil(center.y + rV));
+                const x = Math.round(center.x);
+                for (let yy = minY; yy <= maxY; yy++) {
+                    for (let zz = minZ; zz <= maxZ; zz++) {
+                        const dz = rH > 0 ? (zz - center.z) / rH : 0;
+                        const dy = rV > 0 ? (yy - center.y) / rV : 0;
+                        if (dz * dz + dy * dy <= 1.0) {
+                            vol.setVoxel(x, yy, zz, label);
+                        }
+                    }
+                }
+                break;
+            }
+        }
+    }
+    /**
+     * Brush mode mousemove: write voxels along stroke segment, then re-render.
+     * Uses linear interpolation between prev and current positions to ensure
+     * no gaps when the mouse moves fast.
+     */
+    paintBrushVoxelMove(displayX, displayY) {
+        try {
+            const vol = this.callbacks.getVolumeForLayer(this.ctx.gui_states.layerChannel.layer);
+            const channel = this.ctx.gui_states.layerChannel.activeChannel || 1;
+            const axis = this.ctx.protectedData.axis;
+            const { rH, rV } = this.getVoxelBrushRadius();
+            const current = this.canvasToVoxel3D(displayX, displayY);
+            if (this.prevVoxel) {
+                // Interpolate from prev to current to fill gaps
+                const prev = this.prevVoxel;
+                let steps;
+                switch (axis) {
+                    case 'z':
+                        steps = Math.max(Math.abs(current.x - prev.x), Math.abs(current.y - prev.y));
+                        break;
+                    case 'y':
+                        steps = Math.max(Math.abs(current.x - prev.x), Math.abs(current.z - prev.z));
+                        break;
+                    case 'x':
+                        steps = Math.max(Math.abs(current.z - prev.z), Math.abs(current.y - prev.y));
+                        break;
+                }
+                steps = Math.max(1, Math.ceil(steps));
+                for (let i = 0; i <= steps; i++) {
+                    const t = steps === 0 ? 0 : i / steps;
+                    const pt = {
+                        x: prev.x + (current.x - prev.x) * t,
+                        y: prev.y + (current.y - prev.y) * t,
+                        z: prev.z + (current.z - prev.z) * t,
+                    };
+                    this.paintVoxelEllipse(vol, pt, rH, rV, channel, axis);
+                }
+            }
+            else {
+                this.paintVoxelEllipse(vol, current, rH, rV, channel, axis);
+            }
+            this.prevVoxel = current;
+            // Re-render the layer canvas from volume (marching squares)
+            this.refreshLayerFromVolume();
+        }
+        catch (_a) {
+            // Volume not ready — fall back to canvas drawing
+            this.paintOnCanvasLayer(displayX, displayY);
+        }
+    }
+    /**
+     * Re-render the active layer's canvas from MaskVolume via marching squares,
+     * then composite all layers to master.
+     */
+    refreshLayerFromVolume() {
+        const layer = this.ctx.gui_states.layerChannel.layer;
+        const target = this.ctx.protectedData.layerTargets.get(layer);
+        if (!target)
+            return;
+        const { ctx, canvas } = target;
+        canvas.width = canvas.width; // clear
+        const axis = this.ctx.protectedData.axis;
+        const buffer = this.callbacks.getOrCreateSliceBuffer(axis);
+        if (buffer) {
+            this.callbacks.renderSliceToCanvas(layer, axis, this.ctx.nrrd_states.view.currentSliceIndex, buffer, ctx, this.ctx.nrrd_states.view.changedWidth, this.ctx.nrrd_states.view.changedHeight);
+        }
+        this.callbacks.compositeAllLayers();
+        this.ctx.protectedData.mainPreSlices.mesh.material.map.needsUpdate = true;
+    }
     // ── Private helpers ────────────────────────────────────────
     /** Capture pre-draw slice snapshot for undo */
     capturePreDrawSnapshot() {
@@ -217,27 +441,18 @@ export class DrawingTool extends BaseTool {
     }
     /**
      * Redraws persisted layer data onto ctx before new pencil fill.
-     * Extracted from DrawToolCore.
+     * Delegates to the host's vector renderSliceToCanvas for consistency.
      */
     redrawPreviousImageToLayerCtx(ctx) {
-        var _a;
-        const tempPreImg = (_a = this.callbacks.filterDrawedImage(this.ctx.protectedData.axis, this.ctx.nrrd_states.view.currentSliceIndex)) === null || _a === void 0 ? void 0 : _a.image;
-        this.ctx.protectedData.canvases.emptyCanvas.width =
-            this.ctx.protectedData.canvases.emptyCanvas.width;
-        this.ctx.protectedData.ctxes.emptyCtx.putImageData(tempPreImg, 0, 0);
-        ctx.imageSmoothingEnabled = false;
-        // Coronal (axis='y') Z-flip: same as renderSliceToCanvas.
-        if (this.ctx.protectedData.axis === 'y') {
-            ctx.save();
-            ctx.scale(1, -1);
-            ctx.translate(0, -this.ctx.nrrd_states.view.changedHeight);
-        }
-        ctx.drawImage(this.ctx.protectedData.canvases.emptyCanvas, 0, 0, this.ctx.nrrd_states.view.changedWidth, this.ctx.nrrd_states.view.changedHeight);
-        if (this.ctx.protectedData.axis === 'y') {
-            ctx.restore();
-        }
+        const axis = this.ctx.protectedData.axis;
+        const W = this.ctx.nrrd_states.view.changedWidth;
+        const H = this.ctx.nrrd_states.view.changedHeight;
+        const buffer = this.callbacks.getOrCreateSliceBuffer(axis);
+        if (!buffer)
+            return;
+        this.callbacks.renderSliceToCanvas(this.ctx.gui_states.layerChannel.layer, axis, this.ctx.nrrd_states.view.currentSliceIndex, buffer, ctx, W, H);
     }
-    /** Draw a line segment on a layer canvas */
+    /** Draw a line segment on a layer canvas (pencil mode only) */
     drawLinesOnLayer(ctx, x, y) {
         ctx.beginPath();
         ctx.moveTo(this.ctx.nrrd_states.interaction.drawStartPos.x, this.ctx.nrrd_states.interaction.drawStartPos.y);
@@ -253,17 +468,13 @@ export class DrawingTool extends BaseTool {
         ctx.stroke();
         ctx.closePath();
     }
-    /** Paint a segment on the current layer canvas and composite to master */
+    /** Paint a segment on the current layer canvas and composite to master (pencil mode) */
     paintOnCanvasLayer(x, y) {
         const { ctx } = this.callbacks.setCurrentLayer();
-        // Draw only on the current layer canvas (not master directly)
         this.drawLinesOnLayer(ctx, x, y);
-        // Composite all layers to master to preserve other layers' data
         this.callbacks.compositeAllLayers();
-        // Reset drawing start position to current position
         this.ctx.nrrd_states.interaction.drawStartPos.x = x;
         this.ctx.nrrd_states.interaction.drawStartPos.y = y;
-        // Flag the map as needing updating
         this.ctx.protectedData.mainPreSlices.mesh.material.map.needsUpdate = true;
     }
 }

package/dist/Utils/segmentation/tools/DrawingTool.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/tools/SphereBrushTool.d.ts

@@ -19,7 +19,11 @@ import type { ToolContext } from "./BaseTool";
 import type { SphereBrushHostDeps } from "./ToolHost";
 export declare class SphereBrushTool extends BaseTool {
     private callbacks;
-    /** Recorded sphere center in canvas mm-space */
+    /**
+     * Recorded sphere center in display (zoomed) coordinates.
+     * Used for both preview redraw and voxel calculation — the voxel conversion
+     * uses `changedWidth/Height` as the display scale, so no mm detour is needed.
+     */
     private centerX;
     private centerY;
     private centerSlice;
@@ -27,18 +31,42 @@ export declare class SphereBrushTool extends BaseTool {
     private active;
     /** Current operation mode for the active placement */
     private mode;
-    /** Cumulative "before" snapshots for drag-erase undo (z-index → slice data) */
+    /** Cumulative "before" snapshots for drag undo (z-index → slice data) — used by both brush and eraser drag */
     private dragBeforeSnapshots;
-    /** Whether a drag-erase has actually moved (vs. simple click-release) */
+    /** Whether a drag has actually moved (vs. simple click-release) */
     private dragMoved;
+    /**
+     * Latest cursor position in display (zoomed) coords. Used by the wheel
+     * handler to redraw the preview at the cursor, not the original mousedown
+     * point, during mid-drag radius changes.
+     */
+    private lastDisplayX;
+    private lastDisplayY;
+    private lastSliceIndex;
+    /**
+     * All sphere centers written during the current stroke. The wheel handler
+     * retroactively re-renders the entire stroke at the new radius by restoring
+     * `dragBeforeSnapshots` and replaying every entry here.
+     */
+    private strokeCenters;
     constructor(ctx: ToolContext, callbacks: SphereBrushHostDeps);
     setCallbacks(callbacks: SphereBrushHostDeps): void;
     /**
-     * Convert canvas mm-space coordinates to 3D voxel coordinates.
+     * Convert display (zoomed) coordinates to 3D voxel coordinates.
+     *
+     * Uses `changedWidth/Height` as the display scale directly (instead of
+     * going through mm via `/sizeFactor`). This keeps the write pixel-exact
+     * with the preview circle, which is drawn on a `changedWidth x changedHeight`
+     * sized sphere canvas — avoiding floating-point drift at high zoom levels.
      */
     private canvasToVoxelCenter;
     /**
      * Convert mm radius to per-axis voxel radii.
+     *
+     * For the two axes visible in the current view, scale via
+     * `changedWidth/Height` so the rendered ellipsoid cross-section matches
+     * the preview pixel radius exactly. The third (slice-direction) axis is
+     * not visible, so it uses the plain mm-based ratio.
      */
     private getVoxelRadii;
     /**
@@ -83,11 +111,41 @@ export declare class SphereBrushTool extends BaseTool {
      */
     configSphereBrushWheel(): (e: WheelEvent) => void;
     /**
-     * Handle pointer-down in sphereBrush mode (direct click, no Shift needed).
+     * Retroactively re-render the current stroke at the current radius.
+     *
+     * Step 1: walk every recorded stroke center and expand
+     *   `dragBeforeSnapshots` to cover the new (larger) bounding box. Slices
+     *   newly included here are still pristine because the original stroke
+     *   never touched them.
+     * Step 2: restore every snapshotted slice from its pristine backup.
+     * Step 3: replay every stroke center at the new radius.
+     *
+     * Step 3 produces the same final state as if the user had used the new
+     * radius from the start. Undo still captures the full stroke as one group
+     * at pointerup.
+     */
+    private replayStrokeWithCurrentRadius;
+    /**
+     * Handle pointer-down in sphereBrush mode (3D Slicer-style).
+     *
+     * Captures pristine snapshots at the mousedown location but does NOT
+     * write any voxels yet — the user may wheel-adjust the radius before
+     * dragging. The first sphere is written either by the first pointermove
+     * or by pointerup (single-click fallback).
      */
     onSphereBrushClick(e: MouseEvent): void;
     /**
-     * Handle pointer-up in sphereBrush mode — write sphere to volume.
+     * Handle pointer-move in sphereBrush mode — drag to continuously paint.
+     *
+     * Mirrors sphereEraser drag: writes a new sphere at each move position,
+     * extends the cumulative before-snapshot to cover any newly-touched Z
+     * slices, and repaints the preview. Never notifies the backend; pointerup
+     * does that once for the whole stroke.
+     */
+    onSphereBrushMove(e: MouseEvent): void;
+    /**
+     * Handle pointer-up in sphereBrush mode — finalize stroke + push undo group
+     * + single batched backend notify for all Z slices touched during the drag.
      */
     onSphereBrushPointerUp(): void;
     /**
@@ -104,6 +162,12 @@ export declare class SphereBrushTool extends BaseTool {
      * Works for both click-release and drag-release.
      */
     onSphereEraserPointerUp(): void;
+    /**
+     * Clear per-stroke state after pointerup or cancel. Kept as a helper so
+     * brush/eraser pointerup and cancelActivePlacement all reset the same set
+     * of fields — if a new drag-state field is added, only one place to update.
+     */
+    private finalizeStrokeState;
     /**
      * Expand cumulative "before" snapshots to cover z range [minZ, maxZ].
      * Only captures slices not yet in the map (preserves original state).
@@ -120,8 +184,21 @@ export declare class SphereBrushTool extends BaseTool {
      * @param changedDeltas - If provided, fire onMaskChanged for ALL changed
      *   slices (not just the current view slice) so the backend receives the
      *   full 3D sphere data for NII/GLTF export.
+     * @param notifyBackend - When false, only refresh the local canvas and skip
+     *   the onMaskChanged callback. Used during drag to avoid per-frame HTTP;
+     *   pointerup then calls with `true` to send a single batched update.
      */
     private refreshDisplay;
     /** Whether a sphere placement is currently in progress */
     get isActive(): boolean;
+    /**
+     * Defensively cancel any in-progress sphere placement and clear the preview.
+     *
+     * Called when crosshair mode is entered so any lingering sphere preview
+     * (e.g. red dashed eraser outline) is wiped immediately. In normal flow
+     * `leftButtonDown === true` blocks crosshair toggle, so this shouldn't
+     * fire mid-stroke — but if it ever does, we drop the drag snapshot
+     * rather than committing a partial undo entry.
+     */
+    cancelActivePlacement(): void;
 }