copper3d 3.0.2 → 3.1.1

package/dist/Utils/segmentation/tools/LayerChannelManager.js

@@ -0,0 +1,188 @@
+import { BaseTool } from "./BaseTool";
+import { CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss } from "../core";
+import { SPHERE_CHANNEL_MAP } from "./SphereTool";
+/**
+ * Manages layer/channel state: active selection, visibility, and channel colors.
+ *
+ * Extracted from NrrdTools.ts to reduce its size.
+ * Follows the same BaseTool + ToolContext + Callbacks pattern as other tools.
+ */
+export class LayerChannelManager extends BaseTool {
+    constructor(ctx, callbacks) {
+        super(ctx);
+        this.callbacks = callbacks;
+    }
+    /****************************Active Layer/Channel****************************************************/
+    setActiveLayer(layerId) {
+        this.ctx.gui_states.layerChannel.layer = layerId;
+        this.syncBrushColor();
+    }
+    getActiveLayer() {
+        return this.ctx.gui_states.layerChannel.layer;
+    }
+    setActiveChannel(channel) {
+        this.ctx.gui_states.layerChannel.activeChannel = channel;
+        this.syncBrushColor();
+    }
+    getActiveChannel() {
+        return this.ctx.gui_states.layerChannel.activeChannel;
+    }
+    /**
+     * Set the active sphere type and sync brush/fill color.
+     *
+     * @example
+     * ```ts
+     * nrrdTools.setActiveSphereType('nipple');
+     * ```
+     */
+    setActiveSphereType(type) {
+        this.ctx.gui_states.mode.activeSphereType = type;
+        // Apply color side-effect: update fillColor/brushColor from sphere channel map
+        const mapping = SPHERE_CHANNEL_MAP[type];
+        if (mapping) {
+            const volume = this.callbacks.getVolumeForLayer(mapping.layer);
+            const color = volume
+                ? rgbaToHex(volume.getChannelColor(mapping.channel))
+                : (CHANNEL_HEX_COLORS[mapping.channel] || '#00ff00');
+            this.ctx.gui_states.drawing.fillColor = color;
+            this.ctx.gui_states.drawing.brushColor = color;
+        }
+    }
+    getActiveSphereType() {
+        return this.ctx.gui_states.mode.activeSphereType;
+    }
+    /****************************Visibility****************************************************/
+    setLayerVisible(layerId, visible) {
+        this.ctx.gui_states.layerChannel.layerVisibility[layerId] = visible;
+        this.callbacks.reloadMasksFromVolume();
+    }
+    isLayerVisible(layerId) {
+        var _a;
+        return (_a = this.ctx.gui_states.layerChannel.layerVisibility[layerId]) !== null && _a !== void 0 ? _a : true;
+    }
+    setChannelVisible(layerId, channel, visible) {
+        if (this.ctx.gui_states.layerChannel.channelVisibility[layerId]) {
+            this.ctx.gui_states.layerChannel.channelVisibility[layerId][channel] = visible;
+        }
+        this.callbacks.reloadMasksFromVolume();
+    }
+    isChannelVisible(layerId, channel) {
+        var _a, _b;
+        return (_b = (_a = this.ctx.gui_states.layerChannel.channelVisibility[layerId]) === null || _a === void 0 ? void 0 : _a[channel]) !== null && _b !== void 0 ? _b : true;
+    }
+    getLayerVisibility() {
+        return Object.assign({}, this.ctx.gui_states.layerChannel.layerVisibility);
+    }
+    getChannelVisibility() {
+        const result = {};
+        for (const layerId of this.ctx.nrrd_states.image.layers) {
+            result[layerId] = Object.assign({}, this.ctx.gui_states.layerChannel.channelVisibility[layerId]);
+        }
+        return result;
+    }
+    hasLayerData(layerId) {
+        const volume = this.ctx.protectedData.maskData.volumes[layerId];
+        if (!volume) {
+            return false;
+        }
+        return volume.hasData();
+    }
+    /****************************Per-Layer Opacity****************************************************/
+    setLayerOpacity(layerId, opacity) {
+        this.ctx.gui_states.layerChannel.layerOpacity[layerId] =
+            Math.max(0.1, Math.min(1, opacity));
+        this.callbacks.reloadMasksFromVolume();
+    }
+    getLayerOpacity(layerId) {
+        var _a;
+        return (_a = this.ctx.gui_states.layerChannel.layerOpacity[layerId]) !== null && _a !== void 0 ? _a : 1.0;
+    }
+    getLayerOpacityMap() {
+        return Object.assign({}, this.ctx.gui_states.layerChannel.layerOpacity);
+    }
+    /****************************Channel Colors****************************************************/
+    setChannelColor(layerId, channel, color) {
+        const volume = this.ctx.protectedData.maskData.volumes[layerId];
+        if (!volume) {
+            console.warn(`setChannelColor: unknown layer "${layerId}"`);
+            return;
+        }
+        volume.setChannelColor(channel, color);
+        if (layerId === this.ctx.gui_states.layerChannel.layer && channel === this.ctx.gui_states.layerChannel.activeChannel) {
+            this.syncBrushColor();
+        }
+        this.callbacks.reloadMasksFromVolume();
+        this.callbacks.onChannelColorChanged(layerId, channel, color);
+    }
+    getChannelColor(layerId, channel) {
+        const volume = this.ctx.protectedData.maskData.volumes[layerId];
+        if (!volume) {
+            return { r: 0, g: 255, b: 0, a: 255 };
+        }
+        return volume.getChannelColor(channel);
+    }
+    getChannelHexColor(layerId, channel) {
+        return rgbaToHex(this.getChannelColor(layerId, channel));
+    }
+    getChannelCssColor(layerId, channel) {
+        return rgbaToCss(this.getChannelColor(layerId, channel));
+    }
+    setChannelColors(layerId, colorMap) {
+        const volume = this.ctx.protectedData.maskData.volumes[layerId];
+        if (!volume) {
+            console.warn(`setChannelColors: unknown layer "${layerId}"`);
+            return;
+        }
+        for (const [ch, color] of Object.entries(colorMap)) {
+            volume.setChannelColor(Number(ch), color);
+        }
+        if (layerId === this.ctx.gui_states.layerChannel.layer) {
+            this.syncBrushColor();
+        }
+        this.callbacks.reloadMasksFromVolume();
+    }
+    setAllLayersChannelColor(channel, color) {
+        for (const layerId of this.ctx.nrrd_states.image.layers) {
+            const volume = this.ctx.protectedData.maskData.volumes[layerId];
+            if (volume) {
+                volume.setChannelColor(channel, color);
+            }
+        }
+        if (channel === this.ctx.gui_states.layerChannel.activeChannel) {
+            this.syncBrushColor();
+        }
+        this.callbacks.reloadMasksFromVolume();
+    }
+    resetChannelColors(layerId, channel) {
+        const layers = layerId ? [layerId] : this.ctx.nrrd_states.image.layers;
+        for (const lid of layers) {
+            const volume = this.ctx.protectedData.maskData.volumes[lid];
+            if (volume) {
+                volume.resetChannelColors(channel);
+            }
+        }
+        this.syncBrushColor();
+        this.callbacks.reloadMasksFromVolume();
+    }
+    /****************************Private Helpers****************************************************/
+    /**
+     * Sync brush/fill color from the active layer's volume channel color.
+     * Falls back to global CHANNEL_HEX_COLORS if volume not available.
+     */
+    syncBrushColor() {
+        const channel = this.ctx.gui_states.layerChannel.activeChannel || 1;
+        const layer = this.ctx.gui_states.layerChannel.layer;
+        const volume = this.ctx.protectedData.maskData.volumes[layer];
+        if (volume) {
+            const hex = rgbaToHex(volume.getChannelColor(channel));
+            this.ctx.gui_states.drawing.fillColor = hex;
+            this.ctx.gui_states.drawing.brushColor = hex;
+        }
+        else {
+            const hex = CHANNEL_HEX_COLORS[channel] || '#00ff00';
+            this.ctx.gui_states.drawing.fillColor = hex;
+            this.ctx.gui_states.drawing.brushColor = hex;
+        }
+    }
+}
+//# sourceMappingURL=LayerChannelManager.js.map

package/dist/Utils/segmentation/tools/LayerChannelManager.js.map

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package/dist/Utils/segmentation/tools/PanTool.d.ts

@@ -6,13 +6,7 @@
  */
 import { BaseTool } from "./BaseTool";
 import type { ToolContext } from "./BaseTool";
-/**
- * Callbacks PanTool needs from its host (DrawToolCore).
- */
-export interface PanCallbacks {
-    /** Re-enable zoom wheel after pan ends in sphere mode */
-    zoomActionAfterDrawSphere: () => void;
-}
+import type { PanHostDeps } from "./ToolHost";
 export declare class PanTool extends BaseTool {
     /** Right mouse button currently held */
     private rightClicked;
@@ -26,7 +20,7 @@ export declare class PanTool extends BaseTool {
      * Arrow function preserves `this` binding.
      */
     private readonly boundPointerMove;
-    constructor(ctx: ToolContext, callbacks: PanCallbacks);
+    constructor(ctx: ToolContext, callbacks: PanHostDeps);
     /** Whether a pan drag is currently active */
     get isActive(): boolean;
     /**

package/dist/Utils/segmentation/tools/PanTool.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/tools/SliceRenderPipeline.d.ts

@@ -0,0 +1,80 @@
+import { BaseTool } from "./BaseTool";
+import type { ToolContext } from "./BaseTool";
+import type { SliceRenderHostDeps } from "./ToolHost";
+/**
+ * Manages slice rendering pipeline: slice setup, canvas rendering, and view helpers.
+ *
+ * Extracted from NrrdTools.ts to reduce its size.
+ * Follows the same BaseTool + ToolContext + Callbacks pattern as other tools.
+ */
+export declare class SliceRenderPipeline extends BaseTool {
+    private callbacks;
+    private initState;
+    constructor(ctx: ToolContext, callbacks: SliceRenderHostDeps);
+    /**
+     * Reset initState to true (called from NrrdTools.reset() when switching datasets).
+     */
+    resetInitState(): void;
+    /****************************Slice Setup****************************************************/
+    setDisplaySlicesBaseOnAxis(): void;
+    private loadDisplaySlicesArray;
+    resetDisplaySlicesStatus(): void;
+    private setupConfigs;
+    private setMainPreSlice;
+    private setOriginCanvasAndPre;
+    afterLoadSlice(): void;
+    private updateMaxIndex;
+    /****************************Rendering****************************************************/
+    /**
+     * Phase 3: Reload all mask layers from MaskVolume using buffer reuse
+     * Replaces the old reloadMaskToLayer approach
+     */
+    reloadMasksFromVolume(): void;
+    /******************************** redraw display canvas  ***************************************/
+    /**
+     * Redraw current contrast image to display canvas.
+     * It is more related to change the contrast slice image's window width or center.
+     */
+    redrawDisplayCanvas(): void;
+    redrawMianPreOnDisplayCanvas(): void;
+    /**
+     * flip the canvas to a correct position.
+     * This is because the slice canvas from threejs is not in a correct 2D postion.
+     * Thus, everytime when we redraw the display canvas, we need to flip to draw the origin canvas from threejs.
+     * Under different axis(sagittal, Axial, Coronal), the flip orientation is different.
+     */
+    flipDisplayImageByAxis(): void;
+    /**
+     * Set the empty canvas width and height based on the axis (pixel distance not the mm), to reduce duplicate codes.
+     *
+     * @param axis
+     */
+    setEmptyCanvasSize(axis?: "x" | "y" | "z"): void;
+    /**
+     * Clear masks on drawingCanvas layers.
+     */
+    resetLayerCanvas(): void;
+    /****************************View/Canvas Helpers****************************************************/
+    /**
+     * Resize the draw and display canvas size based on the input size factor number.
+     * @param factor number
+     */
+    resizePaintArea(factor: number): void;
+    /**
+     * Reset the draw and display canvases layout after mouse pan.
+     * If no params in, then center the draw and display canvases.
+     * @param l number, Offset to the left
+     * @param t number, Offset to the top
+     */
+    resetPaintAreaUIPosition(l?: number, t?: number): void;
+    /**
+     * Update the original canvas size, allow set to threejs load one (pixel distance not the mm).
+     * Then update the changedWidth and changedHeight based on the sizeFactor.
+     */
+    updateOriginAndChangedWH(): void;
+    /**
+     * Keep all contrast slice index to same.
+     * Synchronize the slice indexes of all the contrasts so that they are consistent with the main slice's index.
+     */
+    setSyncsliceNum(): void;
+}