copper3d 3.0.1 → 3.1.0

package/dist/Utils/segmentation/core/MigrationUtils.js

@@ -1,163 +0,0 @@
-/**
- * Migration Utilities for MaskVolume
- *
- * Provides bidirectional conversion between the legacy per-slice
- * ImageData storage (`IPaintImages`) and the new contiguous 3D
- * volumetric storage (`MaskVolume`).
- *
- * These utilities enable:
- *  - **Forward migration**: Import existing annotation data into MaskVolume.
- *  - **Rollback compatibility**: Export MaskVolume back to IPaintImages.
- *
- * @example
- * ```ts
- * // Forward: legacy → volume
- * const volume = convertIPaintImagesToVolume(paintImages, { width: 512, height: 512, depth: 100 });
- *
- * // Backward: volume → legacy
- * const legacy = convertVolumeToIPaintImages(volume);
- * ```
- */
-import { MaskVolume } from './MaskVolume';
-// ── Forward migration: IPaintImages → MaskVolume ────────────────────────
-/**
- * Convert legacy per-slice ImageData storage into a MaskVolume.
- *
- * The function iterates over all three axes (`x`, `y`, `z`) and inserts
- * each slice into the volume using `setSliceFromImageData`.
- *
- * **Sparse data handling**: Slices that are absent from the arrays are
- * left as zero (the MaskVolume default). Duplicate indices are
- * overwritten in order (last wins).
- *
- * @param paintImages Legacy per-axis slice collection.
- * @param dimensions  Volume dimensions (must match the ImageData sizes).
- * @param channel     Target channel in the volume (default 0).
- *
- * @returns A new MaskVolume populated with the legacy data.
- *
- * @throws {Error} If a slice's ImageData dimensions don't match the
- *                 expected size for its axis.
- *
- * @example
- * ```ts
- * const volume = convertIPaintImagesToVolume(
- *   maskData.paintImagesLayer1,
- *   { width: 512, height: 512, depth: 100 },
- * );
- * ```
- */
-export function convertIPaintImagesToVolume(paintImages, dimensions, channel = 0) {
-    if (!paintImages) {
-        throw new Error('paintImages is null or undefined');
-    }
-    if (dimensions.width < 1 ||
-        dimensions.height < 1 ||
-        dimensions.depth < 1) {
-        throw new RangeError(`Dimensions must be ≥ 1, got (${dimensions.width}, ${dimensions.height}, ${dimensions.depth})`);
-    }
-    const volume = new MaskVolume(dimensions.width, dimensions.height, dimensions.depth);
-    // Process each axis
-    const axes = [
-        { key: 'z', axis: 'z' },
-        { key: 'y', axis: 'y' },
-        { key: 'x', axis: 'x' },
-    ];
-    for (const { key, axis } of axes) {
-        const slices = paintImages[key];
-        if (!slices || !Array.isArray(slices))
-            continue;
-        for (const paintImage of slices) {
-            if (!paintImage || paintImage.image == null)
-                continue;
-            const { index, image } = paintImage;
-            // Validate slice index bounds
-            const maxIndex = axis === 'x' ? dimensions.width :
-                axis === 'y' ? dimensions.height :
-                    dimensions.depth;
-            if (index < 0 || index >= maxIndex) {
-                continue; // Skip out-of-bounds slices silently
-            }
-            volume.setSliceFromImageData(index, image, axis, channel);
-        }
-    }
-    return volume;
-}
-// ── Backward migration: MaskVolume → IPaintImages ───────────────────────
-/**
- * Convert a MaskVolume back to legacy per-slice ImageData storage.
- *
- * Extracts **all** slices along the Z axis (axial) into an
- * `IPaintImages` structure. X and Y axes are left as empty arrays
- * since the legacy system can reconstruct them on demand.
- *
- * Only non-empty slices (those containing at least one non-zero pixel)
- * are included, matching the sparse behaviour of the original storage.
- *
- * @param volume  The MaskVolume to export.
- * @param channel Channel to extract (default 0).
- * @param options Export options.
- * @param options.includeAllAxes If true, also export X and Y axis slices
- *                               (expensive — use only if needed for full
- *                               backward compatibility). Default: false.
- * @param options.includeEmpty   If true, include slices that are entirely
- *                               zero. Default: false.
- *
- * @returns A legacy IPaintImages structure.
- *
- * @example
- * ```ts
- * const legacy = convertVolumeToIPaintImages(volume);
- * // legacy.z contains non-empty axial slices
- * // legacy.x and legacy.y are empty by default
- * ```
- */
-export function convertVolumeToIPaintImages(volume, channel = 0, options = {}) {
-    if (!volume) {
-        throw new Error('volume is null or undefined');
-    }
-    const { includeAllAxes = false, includeEmpty = false } = options;
-    const dims = volume.getDimensions();
-    const result = { x: [], y: [], z: [] };
-    const renderOpts = { channel };
-    // Always export Z axis (axial slices — most commonly used)
-    for (let z = 0; z < dims.depth; z++) {
-        const imageData = volume.getSliceImageData(z, 'z', renderOpts);
-        if (includeEmpty || hasNonZeroPixels(imageData)) {
-            result.z.push({ index: z, image: imageData });
-        }
-    }
-    // Optionally export X and Y axes
-    if (includeAllAxes) {
-        for (let y = 0; y < dims.height; y++) {
-            const imageData = volume.getSliceImageData(y, 'y', renderOpts);
-            if (includeEmpty || hasNonZeroPixels(imageData)) {
-                result.y.push({ index: y, image: imageData });
-            }
-        }
-        for (let x = 0; x < dims.width; x++) {
-            const imageData = volume.getSliceImageData(x, 'x', renderOpts);
-            if (includeEmpty || hasNonZeroPixels(imageData)) {
-                result.x.push({ index: x, image: imageData });
-            }
-        }
-    }
-    return result;
-}
-// ── Helpers ──────────────────────────────────────────────────────────────
-/**
- * Check whether an ImageData has any non-zero pixel data.
- *
- * Only checks the R channel (index 0 of every 4-byte group) since
- * MaskVolume stores grayscale values in the R channel.
- */
-function hasNonZeroPixels(imageData) {
-    const data = imageData.data;
-    // Check R channel of each pixel (stride 4)
-    for (let i = 0; i < data.length; i += 4) {
-        if (data[i] !== 0)
-            return true;
-    }
-    return false;
-}
-//# sourceMappingURL=MigrationUtils.js.map

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package/dist/Utils/segmentation/coreTools/coreType.d.ts

@@ -1,363 +0,0 @@
-interface ICommXYZ {
-    x: any;
-    y: any;
-    z: any;
-}
-interface ICommXY {
-    x: any;
-    y: any;
-}
-interface ISkipSlicesDictType {
-    [key: string]: any;
-}
-interface IDownloadImageConfig {
-    axis: "x" | "y" | "z";
-    currentIndex: number;
-    drawingCanvas: HTMLCanvasElement;
-    originWidth: number;
-    originHeight: number;
-}
-interface IConvertObjType {
-    currentIndex: number;
-    oldIndex: number;
-    convertCursorNumX: number;
-    convertCursorNumY: number;
-}
-interface IDragPrameters {
-    move: number;
-    y: number;
-    h: number;
-    sensivity: number;
-    handleOnDragMouseUp: (ev: MouseEvent) => void;
-    handleOnDragMouseDown: (ev: MouseEvent) => void;
-    handleOnDragMouseMove: (ev: MouseEvent) => void;
-}
-interface IDrawingEvents {
-    handleOnDrawingMouseDown: (ev: MouseEvent) => void;
-    handleOnDrawingMouseMove: (ev: MouseEvent) => void;
-    handleOnPanMouseMove: (ev: MouseEvent) => void;
-    handleOnDrawingMouseUp: (ev: MouseEvent) => void;
-    handleOnDrawingMouseLeave: (ev: MouseEvent) => void;
-    handleOnDrawingBrushCricleMove: (ev: MouseEvent) => void;
-    handleMouseZoomSliceWheel: (e: WheelEvent) => void;
-    handleSphereWheel: (e: WheelEvent) => void;
-}
-interface IContrastEvents {
-    move_x: number;
-    move_y: number;
-    x: number;
-    y: number;
-    w: number;
-    h: number;
-    handleOnContrastMouseDown: (ev: MouseEvent) => void;
-    handleOnContrastMouseMove: (ev: MouseEvent) => void;
-    handleOnContrastMouseUp: (ev: MouseEvent) => void;
-    handleOnContrastMouseLeave: (ev: MouseEvent) => void;
-}
-interface IPaintImages {
-    x: Array<IPaintImage>;
-    y: Array<IPaintImage>;
-    z: Array<IPaintImage>;
-}
-interface IPaintImage {
-    index: number;
-    image: ImageData;
-}
-/**
- * Import MaskVolume from core module
- * (imported where needed, not here to avoid circular deps)
- */
-type MaskVolume = any;
-/**
- * New mask data structure using MaskVolume for true 3D storage.
- * Dynamic N-layer support: keyed by layer id (e.g. 'layer1', 'layer2', ...).
- */
-type INewMaskData = Record<string, MaskVolume>;
-/**
- * A paired canvas + 2D context for a single annotation layer.
- * Stored atomically in IProtected.layerTargets to prevent canvas/ctx desync.
- */
-interface ILayerRenderTarget {
-    canvas: HTMLCanvasElement;
-    ctx: CanvasRenderingContext2D;
-}
-/**
- * Mask data storage using volumetric MaskVolume (Phase 3)
- *
- * Phase 2 legacy ImageData storage has been removed.
- * All mask data now stored in 3D volumes for memory efficiency.
- */
-type IMaskData = {
-    volumes: INewMaskData;
-};
-interface IProtected {
-    container: HTMLElement;
-    mainAreaContainer: HTMLElement;
-    allSlicesArray: Array<ICommXYZ>;
-    displaySlices: Array<any>;
-    backUpDisplaySlices: Array<any>;
-    skipSlicesDic: ISkipSlicesDictType;
-    currentShowingSlice: any;
-    mainPreSlices: any;
-    Is_Draw: boolean;
-    axis: "x" | "y" | "z";
-    maskData: IMaskData;
-    previousDrawingImage?: ImageData;
-    /** Dynamic per-layer canvas+ctx pairs. Replaces hardcoded LayerOne/Two/Three fields. */
-    layerTargets: Map<string, ILayerRenderTarget>;
-    canvases: {
-        originCanvas: HTMLCanvasElement | any;
-        drawingCanvas: HTMLCanvasElement;
-        displayCanvas: HTMLCanvasElement;
-        drawingCanvasLayerMaster: HTMLCanvasElement;
-        drawingSphereCanvas: HTMLCanvasElement;
-        emptyCanvas: HTMLCanvasElement;
-    };
-    ctxes: {
-        displayCtx: CanvasRenderingContext2D;
-        drawingCtx: CanvasRenderingContext2D;
-        emptyCtx: CanvasRenderingContext2D;
-        drawingSphereCtx: CanvasRenderingContext2D;
-        drawingLayerMasterCtx: CanvasRenderingContext2D;
-    };
-}
-interface IGUIStates {
-    mainAreaSize: number;
-    dragSensitivity: number;
-    Eraser: boolean;
-    globalAlpha: number;
-    lineWidth: number;
-    color: string;
-    pencil: boolean;
-    fillColor: string;
-    brushColor: string;
-    brushAndEraserSize: number;
-    cursor: string;
-    layer: string;
-    cal_distance: "tumour" | "skin" | "nipple" | "ribcage";
-    sphere: boolean;
-    calculator: boolean;
-    readyToUpdate: boolean;
-    defaultPaintCursor: string;
-    max_sensitive: number;
-    clear: () => void;
-    clearAll: () => void;
-    undo: () => void;
-    redo: () => void;
-    downloadCurrentMask: () => void;
-    resetZoom: () => void;
-    /** Currently active channel (1-8). Channel 0 is transparent/erased. */
-    activeChannel: number;
-    /** Layer visibility state: { layer1: true, layer2: true, layer3: true } */
-    layerVisibility: Record<string, boolean>;
-    /** Per-layer channel visibility: { layer1: { 1: true, ..., 8: true }, ... } */
-    channelVisibility: Record<string, Record<number, boolean>>;
-}
-interface IKeyBoardSettings {
-    draw: string;
-    undo: string;
-    redo: string;
-    contrast: string[];
-    crosshair: string;
-    mouseWheel: "Scroll:Zoom" | "Scroll:Slice";
-}
-interface INrrdStates {
-    originWidth: number;
-    originHeight: number;
-    nrrd_x_mm: number;
-    nrrd_y_mm: number;
-    nrrd_z_mm: number;
-    nrrd_x_pixel: number;
-    nrrd_y_pixel: number;
-    nrrd_z_pixel: number;
-    changedWidth: number;
-    changedHeight: number;
-    oldIndex: number;
-    currentIndex: number;
-    maxIndex: number;
-    minIndex: number;
-    RSARatio: number;
-    voxelSpacing: number[];
-    spaceOrigin: number[];
-    dimensions: number[];
-    loadMaskJson: boolean;
-    ratios: ICommXYZ;
-    contrastNum: number;
-    showContrast: boolean;
-    isCursorSelect: boolean;
-    cursorPageX: number;
-    cursorPageY: number;
-    sphereOrigin: ICommXYZ;
-    tumourSphereOrigin: ICommXYZ | null;
-    skinSphereOrigin: ICommXYZ | null;
-    ribSphereOrigin: ICommXYZ | null;
-    nippleSphereOrigin: ICommXYZ | null;
-    tumourColor: "#00ff00";
-    skinColor: "#FFEB3B";
-    ribcageColor: "#2196F3";
-    nippleColor: "#E91E63";
-    spherePlanB: boolean;
-    sphereRadius: number;
-    Mouse_Over_x: number;
-    Mouse_Over_y: number;
-    Mouse_Over: boolean;
-    stepClear: number;
-    sizeFoctor: number;
-    clearAllFlag: boolean;
-    previousPanelL: number;
-    previousPanelT: number;
-    switchSliceFlag: boolean;
-    layers: string[];
-    getMask: (sliceData: Uint8Array, layerId: string, channelId: number, sliceIndex: number, axis: "x" | "y" | "z", width: number, height: number, clearFlag: boolean) => void;
-    onClearLayerVolume: (layerId: string) => void;
-    onChannelColorChanged: (layerId: string, channel: number, color: {
-        r: number;
-        g: number;
-        b: number;
-        a: number;
-    }) => void;
-    getSphere: (sphereOrigin: number[], sphereRadius: number) => void;
-    getCalculateSpherePositions: (tumourSphereOrigin: ICommXYZ | null, skinSphereOrigin: ICommXYZ | null, ribSphereOrigin: ICommXYZ | null, nippleSphereOrigin: ICommXYZ | null, aixs: "x" | "y" | "z") => void;
-    drawStartPos: ICommXY;
-}
-interface IDragOpts {
-    showNumber?: boolean;
-    getSliceNum?: (index: number, contrastNum: number) => void;
-}
-interface IDrawOpts {
-    getMaskData?: (sliceData: Uint8Array, layerId: string, channelId: number, sliceIndex: number, axis: "x" | "y" | "z", width: number, height: number, clearFlag?: boolean) => void;
-    onClearLayerVolume?: (layerId: string) => void;
-    getSphereData?: (sphereOrigin: number[], sphereRadius: number) => void;
-    getCalculateSpherePositionsData?: (tumourSphereOrigin: ICommXYZ | null, skinSphereOrigin: ICommXYZ | null, ribSphereOrigin: ICommXYZ | null, nippleSphereOrigin: ICommXYZ | null, aixs: "x" | "y" | "z") => void;
-}
-interface ICursorPage {
-    x: {
-        cursorPageX: number;
-        cursorPageY: number;
-        index: number;
-        updated: boolean;
-    };
-    y: {
-        cursorPageX: number;
-        cursorPageY: number;
-        index: number;
-        updated: boolean;
-    };
-    z: {
-        cursorPageX: number;
-        cursorPageY: number;
-        index: number;
-        updated: boolean;
-    };
-}
-interface IGuiParameterSettings {
-    globalAlpha: {
-        name: "Opacity";
-        min: number;
-        max: number;
-        step: number;
-    };
-    pencil: {
-        name: "Pencil";
-        onChange: () => void;
-    };
-    sphere: {
-        name: "Sphere";
-        onChange: () => void;
-    };
-    brushAndEraserSize: {
-        name: "BrushAndEraserSize";
-        min: number;
-        max: number;
-        step: number;
-        onChange: () => void;
-    };
-    Eraser: {
-        name: "Eraser";
-        onChange: () => void;
-    };
-    calculator: {
-        name: "Calculator";
-        onChange: () => void;
-    };
-    cal_distance: {
-        name: "CalculatorDistance";
-        onChange: (val: "tumour" | "skin" | "ribcage" | "nipple") => void;
-    };
-    clear: {
-        name: "Clear";
-    };
-    clearAll: {
-        name: "ClearAll";
-    };
-    undo: {
-        name: "Undo";
-    };
-    redo: {
-        name: "Redo";
-    };
-    resetZoom: {
-        name: "ResetZoom";
-    };
-    windowHigh: {
-        name: "ImageContrast";
-        value: null;
-        min: number;
-        max: number;
-        step: number;
-        onChange: (value: number) => void;
-        onFinished: () => void;
-    };
-    windowLow: {
-        name: "WindowLow";
-        value: null;
-        min: number;
-        max: number;
-        step: number;
-        onChange: (value: number) => void;
-        onFinished: () => void;
-    };
-    advance: {
-        layer: {
-            name: "Layer";
-            value: string[];
-        };
-        cursor: {
-            name: "CursorIcon";
-            value: ["crosshair", "pencil", "dot"];
-        };
-        mainAreaSize: {
-            name: "Zoom";
-            min: number;
-            max: number;
-            step: number;
-            onFinished: null;
-        };
-        dragSensitivity: {
-            name: "DragSensitivity";
-            min: number;
-            max: number;
-            step: number;
-        };
-        pencilSettings: {
-            lineWidth: {
-                name: "OuterLineWidth";
-                min: number;
-                max: number;
-                step: number;
-            };
-            color: {
-                name: "Color";
-            };
-            fillColor: {
-                name: "FillColor";
-            };
-        };
-        BrushSettings: {
-            brushColor: {
-                name: "BrushColor";
-            };
-        };
-    };
-}
-export { ICommXYZ, ICommXY, IDownloadImageConfig, IConvertObjType, IDragPrameters, IDrawingEvents, IContrastEvents, IProtected, IGUIStates, IDragOpts, IDrawOpts, INrrdStates, IPaintImage, IPaintImages, ISkipSlicesDictType, IMaskData, INewMaskData, ILayerRenderTarget, ICursorPage, IGuiParameterSettings, IKeyBoardSettings };

package/dist/Utils/segmentation/coreTools/coreType.js

@@ -1,3 +0,0 @@
-;
-export {};
-//# sourceMappingURL=coreType.js.map

package/dist/Utils/segmentation/coreTools/coreType.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"coreType.js","sourceRoot":"","sources":["../../../../src/Utils/segmentation/coreTools/coreType.ts"],"names":[],"mappings":"AAkZC,CAAC"}