copper3d 3.0.1 → 3.0.2

package/dist/Utils/segmentation/coreTools/gui.js

@@ -1,36 +1,31 @@
 import { switchEraserSize, switchPencilIcon } from "../../utils";
 import { CHANNEL_HEX_COLORS, rgbaToHex } from "../core";
+import { SPHERE_CHANNEL_MAP } from "../tools/SphereTool";
 function setupGui(configs) {
     if (configs.modeFolder.__controllers.length > 0)
         removeGuiFolderChilden(configs.modeFolder);
     configs.modeFolder.open();
     const actionsFolder = configs.modeFolder.addFolder("DefaultActions");
     actionsFolder
-        .add(configs.gui_states, "globalAlpha")
+        .add(configs.gui_states.drawing, "globalAlpha")
         .name("Opacity")
         .min(0.1)
         .max(1)
         .step(0.01);
     actionsFolder
-        .add(configs.gui_states, "pencil")
+        .add(configs.gui_states.mode, "pencil")
         .name("Pencil")
         .onChange(() => {
         updatePencilState();
     });
     actionsFolder
-        .add(configs.gui_states, "sphere")
+        .add(configs.gui_states.mode, "sphere")
         .name("Sphere")
         .onChange(() => {
         updateGuiSphereState();
     });
     actionsFolder
-        .add(configs.gui_states, "calculator")
-        .name("Calculator")
-        .onChange(() => {
-        updateCalculatorState();
-    });
-    actionsFolder
-        .add(configs.gui_states, "brushAndEraserSize")
+        .add(configs.gui_states.drawing, "brushAndEraserSize")
         .name("BrushAndEraserSize")
         .min(5)
         .max(50)
@@ -38,14 +33,31 @@ function setupGui(configs) {
         .onChange(() => {
         updateGuiBrushAndEraserSize();
     });
-    actionsFolder.add(configs.gui_states, "Eraser").onChange((value) => {
+    actionsFolder.add(configs.gui_states.mode, "eraser").onChange((value) => {
         updateGuiEraserState();
     });
-    actionsFolder.add(configs.gui_states, "clear").name("Clear");
-    actionsFolder.add(configs.gui_states, "clearAll").name("ClearAll");
-    actionsFolder.add(configs.gui_states, "undo").name("Undo");
-    actionsFolder.add(configs.gui_states, "redo").name("Redo");
-    actionsFolder.add(configs.gui_states, "resetZoom").name("ResetZoom");
+    // Phase 2: Actions are no longer on gui_states — use a local actions object for dat.gui
+    const actions = {
+        clear: () => configs.clearActiveSlice(),
+        clearAll: () => {
+            const text = "Are you sure remove annotations on All slice?";
+            if (confirm(text) === true) {
+                configs.nrrd_states.flags.clearAllFlag = true;
+                configs.clearActiveSlice();
+                configs.clearActiveLayer();
+            }
+            configs.nrrd_states.flags.clearAllFlag = false;
+        },
+        undo: () => configs.undoLastPainting(),
+        redo: () => configs.redoLastPainting(),
+        resetZoom: () => configs.resetZoom(),
+        downloadCurrentMask: () => configs.downloadCurrentMask(),
+    };
+    actionsFolder.add(actions, "clear").name("Clear");
+    actionsFolder.add(actions, "clearAll").name("ClearAll");
+    actionsFolder.add(actions, "undo").name("Undo");
+    actionsFolder.add(actions, "redo").name("Redo");
+    actionsFolder.add(actions, "resetZoom").name("ResetZoom");
     actionsFolder
         .add(configs.mainPreSlices.volume, "windowHigh", configs.mainPreSlices.volume.min, configs.mainPreSlices.volume.max, 1)
         .name("ImageContrast")
@@ -57,34 +69,34 @@ function setupGui(configs) {
     });
     const advanceFolder = configs.modeFolder.addFolder("AdvanceSettings");
     advanceFolder
-        .add(configs.gui_states, "cal_distance", ["tumour", "skin", "ribcage", "nipple"])
+        .add(configs.gui_states.mode, "activeSphereType", ["tumour", "skin", "ribcage", "nipple"])
         .name("Layer")
         .onChange((val) => {
         updateCalDistance(val);
     });
     advanceFolder
-        .add(configs.gui_states, "layer", ["layer1", "layer2", "layer3"])
+        .add(configs.gui_states.layerChannel, "layer", ["layer1", "layer2", "layer3"])
         .name("Layer")
         .onChange((_val) => {
         // Get color from the active layer's volume (respects custom per-layer colors)
-        const channel = configs.gui_states.activeChannel || 1;
-        const volume = configs.getVolumeForLayer(configs.gui_states.layer);
+        const channel = configs.gui_states.layerChannel.activeChannel || 1;
+        const volume = configs.getVolumeForLayer(configs.gui_states.layerChannel.layer);
         const hexColor = volume
             ? rgbaToHex(volume.getChannelColor(channel))
             : (CHANNEL_HEX_COLORS[channel] || '#00ff00');
-        configs.gui_states.fillColor = hexColor;
-        configs.gui_states.brushColor = hexColor;
+        configs.gui_states.drawing.fillColor = hexColor;
+        configs.gui_states.drawing.brushColor = hexColor;
     });
     advanceFolder
-        .add(configs.gui_states, "cursor", ["crosshair", "pencil", "dot"])
+        .add(configs.gui_states.viewConfig, "cursor", ["crosshair", "pencil", "dot"])
         .name("CursorIcons")
         .onChange((value) => {
-        configs.gui_states.defaultPaintCursor = switchPencilIcon(value, configs.pencilUrls);
+        configs.gui_states.viewConfig.defaultPaintCursor = switchPencilIcon(value, configs.pencilUrls);
         configs.drawingCanvas.style.cursor =
-            configs.gui_states.defaultPaintCursor;
+            configs.gui_states.viewConfig.defaultPaintCursor;
     });
     advanceFolder
-        .add(configs.gui_states, "mainAreaSize")
+        .add(configs.gui_states.viewConfig, "mainAreaSize")
         .name("Zoom")
         .min(1)
         .max(8)
@@ -92,50 +104,50 @@ function setupGui(configs) {
         configs.setMainAreaSize(factor);
     });
     advanceFolder
-        .add(configs.gui_states, "dragSensitivity")
+        .add(configs.gui_states.viewConfig, "dragSensitivity")
         .name("DragSensitivity")
         .min(1)
-        .max(configs.gui_states.max_sensitive)
+        .max(configs.gui_states.viewConfig.max_sensitive)
         .step(1);
     const segmentationFolder = advanceFolder.addFolder("PencilSettings");
     segmentationFolder
-        .add(configs.gui_states, "lineWidth")
+        .add(configs.gui_states.drawing, "lineWidth")
         .name("OuterLineWidth")
         .min(1.7)
         .max(3)
         .step(0.01);
-    segmentationFolder.addColor(configs.gui_states, "color").name("Color");
+    segmentationFolder.addColor(configs.gui_states.drawing, "color").name("Color");
     segmentationFolder
-        .addColor(configs.gui_states, "fillColor")
+        .addColor(configs.gui_states.drawing, "fillColor")
         .name("FillColor");
     const bushFolder = advanceFolder.addFolder("BrushSettings");
-    bushFolder.addColor(configs.gui_states, "brushColor").name("BrushColor");
+    bushFolder.addColor(configs.gui_states.drawing, "brushColor").name("BrushColor");
     const maskFolder = advanceFolder.addFolder("MaskDownload");
     maskFolder
-        .add(configs.gui_states, "downloadCurrentMask")
+        .add(actions, "downloadCurrentMask")
         .name("DownloadCurrentMask");
     const contrastFolder = advanceFolder.addFolder("ContrastAdvanceSettings");
     contrastFolder
         .add(configs.mainPreSlices.volume, "lowerThreshold", configs.mainPreSlices.volume.min, configs.mainPreSlices.volume.max, 1)
         .name("LowerThreshold")
         .onChange((value) => {
-        configs.gui_states.readyToUpdate = false;
+        configs.gui_states.viewConfig.readyToUpdate = false;
         configs.updateSlicesContrast(value, "lowerThreshold");
     })
         .onFinishChange(() => {
         repraintAllContrastSlices(configs.protectedData.displaySlices);
-        configs.gui_states.readyToUpdate = true;
+        configs.gui_states.viewConfig.readyToUpdate = true;
     });
     contrastFolder
         .add(configs.mainPreSlices.volume, "upperThreshold", configs.mainPreSlices.volume.min, configs.mainPreSlices.volume.max, 1)
         .name("UpperThreshold")
         .onChange((value) => {
-        configs.gui_states.readyToUpdate = false;
+        configs.gui_states.viewConfig.readyToUpdate = false;
         configs.updateSlicesContrast(value, "upperThreshold");
     })
         .onFinishChange(() => {
         repraintAllContrastSlices(configs.protectedData.displaySlices);
-        configs.gui_states.readyToUpdate = true;
+        configs.gui_states.viewConfig.readyToUpdate = true;
     });
     contrastFolder
         .add(configs.mainPreSlices.volume, "windowLow", configs.mainPreSlices.volume.min, configs.mainPreSlices.volume.max, 1)
@@ -145,18 +157,18 @@ function setupGui(configs) {
     })
         .onFinishChange(() => {
         repraintAllContrastSlices(configs.protectedData.displaySlices);
-        configs.gui_states.readyToUpdate = true;
+        configs.gui_states.viewConfig.readyToUpdate = true;
     });
     actionsFolder.open();
     const updateGuiBrushAndEraserSize = () => {
-        if (configs.gui_states.Eraser) {
+        if (configs.gui_states.mode.eraser) {
             configs.eraserUrls.length > 0
-                ? (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.brushAndEraserSize, configs.eraserUrls))
-                : (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.brushAndEraserSize));
+                ? (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.drawing.brushAndEraserSize, configs.eraserUrls))
+                : (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.drawing.brushAndEraserSize));
         }
     };
     const updatePencilState = () => {
-        if (configs.gui_states.pencil) {
+        if (configs.gui_states.mode.pencil) {
             // add canvas brush circle move event listeners
             configs.drawingCanvas.removeEventListener("mouseover", configs.drawingPrameters.handleOnDrawingBrushCricleMove);
             configs.drawingCanvas.removeEventListener("mouseout", configs.drawingPrameters.handleOnDrawingBrushCricleMove);
@@ -166,87 +178,53 @@ function setupGui(configs) {
             configs.drawingCanvas.addEventListener("mouseover", configs.drawingPrameters.handleOnDrawingBrushCricleMove);
             configs.drawingCanvas.addEventListener("mouseout", configs.drawingPrameters.handleOnDrawingBrushCricleMove);
         }
-        configs.drawingCanvas.style.cursor = configs.gui_states.defaultPaintCursor;
+        configs.drawingCanvas.style.cursor = configs.gui_states.viewConfig.defaultPaintCursor;
     };
     const updateGuiEraserState = () => {
-        // configs.gui_states.Eraser = value;
-        if (configs.gui_states.Eraser) {
+        // configs.gui_states.mode.eraser = value;
+        if (configs.gui_states.mode.eraser) {
             configs.eraserUrls.length > 0
-                ? (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.brushAndEraserSize, configs.eraserUrls))
-                : (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.brushAndEraserSize));
+                ? (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.drawing.brushAndEraserSize, configs.eraserUrls))
+                : (configs.drawingCanvas.style.cursor = switchEraserSize(configs.gui_states.drawing.brushAndEraserSize));
         }
         else {
             configs.drawingCanvas.style.cursor =
-                configs.gui_states.defaultPaintCursor;
+                configs.gui_states.viewConfig.defaultPaintCursor;
         }
     };
     const updateGuiSphereState = () => {
-        if (configs.gui_states.sphere) {
-            // configs.drawingCanvas.removeEventListener(
-            //   "wheel",
-            //   configs.drawingPrameters.handleZoomWheel
-            // );
-            configs.removeDragMode();
+        var _a, _b, _c, _d;
+        if (configs.gui_states.mode.sphere) {
+            // Entering sphere mode — enterSphereMode handles:
+            // drag removal, guiTool update, canvas clearing
+            (_b = (_a = configs).enterSphereMode) === null || _b === void 0 ? void 0 : _b.call(_a);
         }
         else {
-            // configs.drawingCanvas.addEventListener(
-            //   "wheel",
-            //   configs.drawingPrameters.handleZoomWheel
-            // );
-            configs.configDragMode();
-            // clear canvas
-            configs.clearPaint();
-            configs.clearStoreImages();
-        }
-    };
-    const updateCalculatorState = () => {
-        if (configs.gui_states.calculator) {
-            // disable mouse to drag slices
-            configs.removeDragMode();
-        }
-        else {
-            // enable mouse to drag slices
-            configs.configDragMode();
-            // clear canvas
-            configs.clearPaint();
-            configs.clearStoreImages();
+            // Exiting sphere mode — exitSphereMode handles:
+            // drag restore, guiTool reset, mask reload
+            (_d = (_c = configs).exitSphereMode) === null || _d === void 0 ? void 0 : _d.call(_c);
         }
     };
     const updateCalDistance = (val) => {
-        switch (val) {
-            case "tumour":
-                configs.gui_states.fillColor = configs.nrrd_states.tumourColor;
-                configs.gui_states.brushColor = configs.nrrd_states.tumourColor;
-                break;
-            case "skin":
-                configs.gui_states.fillColor = configs.nrrd_states.skinColor;
-                configs.gui_states.brushColor = configs.nrrd_states.skinColor;
-                break;
-            case "ribcage":
-                configs.gui_states.fillColor = configs.nrrd_states.ribcageColor;
-                configs.gui_states.brushColor = configs.nrrd_states.ribcageColor;
-                break;
-            case "nipple":
-                configs.gui_states.fillColor = configs.nrrd_states.nippleColor;
-                configs.gui_states.brushColor = configs.nrrd_states.nippleColor;
-                break;
-            default:
-                configs.gui_states.fillColor = configs.nrrd_states.tumourColor;
-                configs.gui_states.brushColor = configs.nrrd_states.tumourColor;
-                break;
-        }
+        const { layer, channel } = SPHERE_CHANNEL_MAP[val];
+        const volume = configs.getVolumeForLayer(layer);
+        const color = volume
+            ? rgbaToHex(volume.getChannelColor(channel))
+            : (CHANNEL_HEX_COLORS[channel] || '#00ff00');
+        configs.gui_states.drawing.fillColor = color;
+        configs.gui_states.drawing.brushColor = color;
     };
     const updateGuiImageWindowLowOnChange = (value) => {
-        configs.gui_states.readyToUpdate = false;
+        configs.gui_states.viewConfig.readyToUpdate = false;
         configs.updateSlicesContrast(value, "windowLow");
     };
     const updateGuiImageWindowHighOnChange = (value) => {
-        configs.gui_states.readyToUpdate = false;
+        configs.gui_states.viewConfig.readyToUpdate = false;
         configs.updateSlicesContrast(value, "windowHigh");
     };
     const updateGuiImageContrastOnFinished = () => {
         repraintAllContrastSlices(configs.protectedData.displaySlices);
-        configs.gui_states.readyToUpdate = true;
+        configs.gui_states.viewConfig.readyToUpdate = true;
     };
     return {
         globalAlpha: {
@@ -270,15 +248,11 @@ function setupGui(configs) {
             step: 1,
             onChange: updateGuiBrushAndEraserSize,
         },
-        Eraser: {
+        eraser: {
             name: "Eraser",
             onChange: updateGuiEraserState,
         },
-        calculator: {
-            name: "Calculator",
-            onChange: updateCalculatorState,
-        },
-        cal_distance: {
+        activeSphereType: {
             name: "CalculatorDistance",
             onChange: updateCalDistance
         },
@@ -327,7 +301,7 @@ function setupGui(configs) {
             mainAreaSize: {
                 name: "Zoom",
                 min: 1,
-                max: configs.gui_states.max_sensitive,
+                max: configs.gui_states.viewConfig.max_sensitive,
                 step: 1,
                 onFinished: null,
             },

package/dist/Utils/segmentation/coreTools/gui.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/eventRouter/EventRouter.d.ts

@@ -72,7 +72,8 @@ export declare class EventRouter {
     setGuiTool(tool: GuiTool): void;
     /**
      * Toggle crosshair mode.
-     * Blocked when draw or contrast mode is active (mutual exclusion).
+     * Allowed in drawing tools AND sphere mode.
+     * Blocked when draw or contrast mode is active, or left button is held (mutual exclusion).
      */
     toggleCrosshair(): void;
     /**

package/dist/Utils/segmentation/eventRouter/EventRouter.js

@@ -19,6 +19,7 @@ const DEFAULT_KEYBOARD_SETTINGS = {
     redo: 'y',
     contrast: ['Control', 'Meta'],
     crosshair: 'c',
+    sphere: 'q',
     mouseWheel: 'Scroll:Zoom'
 };
 /**
@@ -155,21 +156,24 @@ export class EventRouter {
      */
     setGuiTool(tool) {
         this.guiTool = tool;
-        // Reset to idle when switching tools
-        if (tool === 'sphere' || tool === 'calculator') {
-            this.state.crosshairEnabled = false;
-            this.setMode('idle');
+        // When entering sphere mode, keep crosshair if active, otherwise idle
+        if (tool === 'sphere') {
+            if (!this.state.crosshairEnabled) {
+                this.setMode('idle');
+            }
         }
     }
     /**
      * Toggle crosshair mode.
-     * Blocked when draw or contrast mode is active (mutual exclusion).
+     * Allowed in drawing tools AND sphere mode.
+     * Blocked when draw or contrast mode is active, or left button is held (mutual exclusion).
      */
     toggleCrosshair() {
-        if (!DRAWING_TOOLS.has(this.guiTool))
+        // Allow crosshair in drawing tools and sphere mode
+        if (!DRAWING_TOOLS.has(this.guiTool) && this.guiTool !== 'sphere')
             return;
-        // Block crosshair activation during draw or contrast
-        if (this.state.shiftHeld || this.mode === 'draw' || this.mode === 'contrast')
+        // Block crosshair activation during draw, contrast, or while left button held
+        if (this.state.shiftHeld || this.state.leftButtonDown || this.mode === 'draw' || this.mode === 'contrast')
             return;
         this.state.crosshairEnabled = !this.state.crosshairEnabled;
         this.setMode(this.state.crosshairEnabled ? 'crosshair' : 'idle');
@@ -294,8 +298,9 @@ export class EventRouter {
             }
         }
         if (this.contrastEnabled && this.keyboardSettings.contrast.includes(ev.key)) {
-            // Block contrast state when crosshair or draw is active (mutual exclusion)
-            if (!this.state.crosshairEnabled && this.mode !== 'draw') {
+            // Block contrast state when crosshair, draw, or sphere is active (mutual exclusion)
+            if (!this.state.crosshairEnabled && this.mode !== 'draw'
+                && this.guiTool !== 'sphere') {
                 this.state.ctrlHeld = true;
             }
         }

package/dist/Utils/segmentation/eventRouter/EventRouter.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/eventRouter/types.d.ts

@@ -12,14 +12,13 @@
  * - `contrast`: Ctrl held, left-drag adjusts window/level
  * - `crosshair`: Crosshair mode enabled (C key toggle)
  * - `sphere`: Sphere placement tool active
- * - `calculator`: Distance calculator tool active
  * - `pan`: Right-drag panning the canvas
  */
-export type InteractionMode = 'idle' | 'draw' | 'drag' | 'contrast' | 'crosshair' | 'sphere' | 'calculator' | 'pan';
+export type InteractionMode = 'idle' | 'draw' | 'drag' | 'contrast' | 'crosshair' | 'sphere' | 'pan';
 /**
  * GUI tool selection (set from UI buttons)
  */
-export type GuiTool = 'pencil' | 'brush' | 'eraser' | 'sphere' | 'calculator';
+export type GuiTool = 'pencil' | 'brush' | 'eraser' | 'sphere';
 /**
  * Keyboard event handler type
  */
@@ -56,6 +55,7 @@ export interface KeyboardSettings {
     redo: string;
     contrast: string[];
     crosshair: string;
+    sphere: string;
     mouseWheel: 'Scroll:Zoom' | 'Scroll:Slice';
 }
 /**

package/dist/Utils/segmentation/tools/BaseTool.d.ts

@@ -1,23 +1,26 @@
 /**
  * BaseTool - Abstract base for extracted DrawToolCore tools
  *
- * Provides shared access to the legacy state objects (nrrd_states,
- * gui_states, protectedData) via a ToolContext interface.
+ * Provides shared access to state objects via a ToolContext interface.
  *
  * NOTE: This is for the OLD DrawToolCore system.
  * The new SegmentationManager system has its own tools in manager/tools/.
  */
-import type { INrrdStates, IGUIStates, IProtected, ICursorPage } from "../coreTools/coreType";
+import type { IProtected, ICursorPage, IAnnotationCallbacks } from "../coreTools/coreType";
+import type { NrrdState } from "../coreTools/NrrdState";
+import type { GuiState } from "../coreTools/GuiState";
 import type { EventRouter } from "../eventRouter/EventRouter";
 /**
  * Shared context injected into every legacy tool.
  * References are shared (not copied), so tools see the same state.
  */
 export interface ToolContext {
-    nrrd_states: INrrdStates;
-    gui_states: IGUIStates;
+    nrrd_states: NrrdState;
+    gui_states: GuiState;
     protectedData: IProtected;
     cursorPage: ICursorPage;
+    /** External annotation callbacks (Phase 2) */
+    callbacks: IAnnotationCallbacks;
     /** EventRouter reference for mode/state queries. Set after initDrawToolCore(). */
     eventRouter?: EventRouter;
 }

package/dist/Utils/segmentation/tools/BaseTool.js

@@ -1,8 +1,7 @@
 /**
  * BaseTool - Abstract base for extracted DrawToolCore tools
  *
- * Provides shared access to the legacy state objects (nrrd_states,
- * gui_states, protectedData) via a ToolContext interface.
+ * Provides shared access to state objects via a ToolContext interface.
  *
  * NOTE: This is for the OLD DrawToolCore system.
  * The new SegmentationManager system has its own tools in manager/tools/.

package/dist/Utils/segmentation/tools/BaseTool.js.map

@@ -1 +1 @@
-{"version":3,"file":"BaseTool.js","sourceRoot":"","sources":["../../../../src/Utils/segmentation/tools/BaseTool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAyBH,MAAM,OAAgB,QAAQ;IAG5B,YAAY,GAAgB;QAC1B,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;IACjB,CAAC;IAED,UAAU,CAAC,GAAgB;QACzB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;IACjB,CAAC;CACF"}
+{"version":3,"file":"BaseTool.js","sourceRoot":"","sources":["../../../../src/Utils/segmentation/tools/BaseTool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AA4BH,MAAM,OAAgB,QAAQ;IAG5B,YAAY,GAAgB;QAC1B,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;IACjB,CAAC;IAED,UAAU,CAAC,GAAgB;QACzB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;IACjB,CAAC;CACF"}