copper3d 3.0.0 → 3.0.2

package/dist/Utils/segmentation/CommToolsData.js

@@ -1,6 +1,8 @@
+import { NrrdState } from "./coreTools/NrrdState";
+import { GuiState } from "./coreTools/GuiState";
 import { MaskVolume } from "./core/index";
 import { switchPencilIcon } from "../utils";
-import { enableDownload } from "./coreTools/divControlTools";
+import { CHANNEL_HEX_COLORS } from "./core/types";
 export class CommToolsData {
     constructor(container, mainAreaContainer, options) {
         var _a;
@@ -9,6 +11,14 @@ export class CommToolsData {
         this._reusableSliceBuffer = null;
         this._reusableBufferWidth = 0;
         this._reusableBufferHeight = 0;
+        /** External annotation callbacks — set via draw() options */
+        this.annotationCallbacks = {
+            onMaskChanged: () => { },
+            onSphereChanged: () => { },
+            onCalculatorPositionsChanged: () => { },
+            onLayerVolumeCleared: () => { },
+            onChannelColorChanged: () => { },
+        };
         /** Whether the keyboard-config dialog is open (suppresses all shortcuts). */
         this._configKeyBoard = false;
         /** Active keyboard shortcut bindings. */
@@ -18,63 +28,10 @@ export class CommToolsData {
             redo: "y",
             contrast: ["Control", "Meta"],
             crosshair: "s",
+            sphere: "q",
             mouseWheel: "Scroll:Zoom",
         };
-        this.nrrd_states = {
-            originWidth: 0,
-            originHeight: 0,
-            nrrd_x_mm: 0,
-            nrrd_y_mm: 0,
-            nrrd_z_mm: 0,
-            nrrd_x_pixel: 0,
-            nrrd_y_pixel: 0,
-            nrrd_z_pixel: 0,
-            changedWidth: 0,
-            changedHeight: 0,
-            oldIndex: 0,
-            currentIndex: 0,
-            maxIndex: 0,
-            minIndex: 0,
-            RSARatio: 0,
-            voxelSpacing: [],
-            spaceOrigin: [],
-            dimensions: [],
-            loadMaskJson: false,
-            ratios: { x: 1, y: 1, z: 1 },
-            contrastNum: 0,
-            showContrast: false,
-            enableCursorChoose: false,
-            isCursorSelect: false,
-            cursorPageX: 0,
-            cursorPageY: 0,
-            sphereOrigin: { x: [0, 0, 0], y: [0, 0, 0], z: [0, 0, 0] },
-            tumourSphereOrigin: null,
-            skinSphereOrigin: null,
-            ribSphereOrigin: null,
-            nippleSphereOrigin: null,
-            tumourColor: "#00ff00",
-            skinColor: "#FFEB3B",
-            ribcageColor: "#2196F3",
-            nippleColor: "#E91E63",
-            spherePlanB: true,
-            sphereRadius: 5,
-            Mouse_Over_x: 0,
-            Mouse_Over_y: 0,
-            Mouse_Over: false,
-            stepClear: 1,
-            sizeFoctor: this.baseCanvasesSize,
-            clearAllFlag: false,
-            previousPanelL: -99999,
-            previousPanelT: -99999,
-            switchSliceFlag: false,
-            layers: ["layer1", "layer2", "layer3"],
-            getMask: (sliceData, layerId, channelId, sliceIndex, axis, width, height, clearFlag) => { },
-            onClearLayerVolume: (layerId) => { },
-            onChannelColorChanged: () => { },
-            getSphere: (sphereOrigin, sphereRadius) => { },
-            getCalculateSpherePositions: (tumourSphereOrigin, skinSphereOrigin, ribSphereOrigin, nippleSphereOrigin, aixs) => { },
-            drawStartPos: { x: 1, y: 1 },
-        };
+        this.nrrd_states = new NrrdState(this.baseCanvasesSize);
         this.cursorPage = {
             x: {
                 cursorPageX: 0,
@@ -95,76 +52,19 @@ export class CommToolsData {
                 updated: false,
             },
         };
-        this.gui_states = {
-            mainAreaSize: 3,
-            dragSensitivity: 75,
-            Eraser: false,
-            globalAlpha: 0.6,
-            lineWidth: 2,
-            color: "#f50a33",
-            pencil: true,
-            fillColor: "#00ff00",
-            brushColor: "#00ff00",
-            brushAndEraserSize: 10,
-            cursor: "dot",
-            layer: "layer1",
-            cal_distance: "tumour",
-            sphere: false,
-            calculator: false,
-            readyToUpdate: true,
+        this.gui_states = new GuiState({
             defaultPaintCursor: switchPencilIcon("dot"),
-            max_sensitive: 100,
-            // EraserSize: 25,
-            clear: () => {
-                this.clearPaint();
-            },
-            clearAll: () => {
-                const text = "Are you sure remove annotations on All slice?";
-                if (confirm(text) === true) {
-                    this.nrrd_states.clearAllFlag = true;
-                    this.clearPaint();
-                    this.clearStoreImages();
-                }
-                this.nrrd_states.clearAllFlag = false;
-            },
-            undo: () => {
-                this.undoLastPainting();
-            },
-            redo: () => {
-                this.redoLastPainting();
-            },
-            downloadCurrentMask: () => {
-                const config = {
-                    axis: this.protectedData.axis,
-                    currentIndex: this.nrrd_states.currentIndex,
-                    drawingCanvas: this.protectedData.canvases.drawingCanvas,
-                    originWidth: this.nrrd_states.originWidth,
-                    originHeight: this.nrrd_states.originHeight,
-                };
-                enableDownload(config);
-            },
-            resetZoom: () => {
-                this.nrrd_states.sizeFoctor = this.baseCanvasesSize;
-                this.gui_states.mainAreaSize = this.baseCanvasesSize;
-                this.resizePaintArea(this.nrrd_states.sizeFoctor);
-                this.resetPaintAreaUIPosition();
-            },
-            activeChannel: 1,
-            layerVisibility: { layer1: true, layer2: true, layer3: true },
-            channelVisibility: {
-                layer1: { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
-                layer2: { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
-                layer3: { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
-            },
-        };
+            defaultFillColor: CHANNEL_HEX_COLORS[1],
+            defaultBrushColor: CHANNEL_HEX_COLORS[1],
+        });
         const layers = (_a = options === null || options === void 0 ? void 0 : options.layers) !== null && _a !== void 0 ? _a : ["layer1", "layer2", "layer3"];
         if (layers.length > 10) {
             console.warn(`CommToolsData: ${layers.length} layers requested; recommended maximum is 10.`);
         }
         // Override the default states with the actual layer list
-        this.nrrd_states.layers = layers;
-        this.gui_states.layerVisibility = Object.fromEntries(layers.map((id) => [id, true]));
-        this.gui_states.channelVisibility = Object.fromEntries(layers.map((id) => [
+        this.nrrd_states.image.layers = layers;
+        this.gui_states.layerChannel.layerVisibility = Object.fromEntries(layers.map((id) => [id, true]));
+        this.gui_states.layerChannel.channelVisibility = Object.fromEntries(layers.map((id) => [
             id,
             { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
         ]));
@@ -172,7 +72,7 @@ export class CommToolsData {
         const layerTargets = this.generateLayerTargets(layers);
         // Get NRRD dimensions (will be set later when NRRD loads)
         // Default to 1x1x1 for now, will be re-initialized in NrrdTools when dimensions are known
-        const dims = this.nrrd_states.dimensions;
+        const dims = this.nrrd_states.image.dimensions;
         const [width, height, depth] = dims.length === 3 ? dims : [1, 1, 1];
         this.protectedData = {
             container,
@@ -183,9 +83,7 @@ export class CommToolsData {
             skipSlicesDic: {},
             currentShowingSlice: undefined,
             mainPreSlices: undefined,
-            Is_Shift_Pressed: false,
-            Is_Ctrl_Pressed: false,
-            Is_Draw: false,
+            isDrawing: false,
             axis: "z",
             maskData: {
                 // Volumetric storage (Phase 3 — only storage mechanism)
@@ -259,7 +157,7 @@ export class CommToolsData {
         const vol = volumes[layer];
         if (vol)
             return vol;
-        const firstLayerId = this.nrrd_states.layers[0];
+        const firstLayerId = this.nrrd_states.image.layers[0];
         console.warn(`CommToolsData: unknown layer "${layer}", falling back to "${firstLayerId}"`);
         return volumes[firstLayerId];
     }
@@ -275,7 +173,7 @@ export class CommToolsData {
      * ```
      */
     getCurrentVolume() {
-        return this.getVolumeForLayer(this.gui_states.layer);
+        return this.getVolumeForLayer(this.gui_states.layerChannel.layer);
     }
     /**
      * Get all three MaskVolume instances
@@ -311,10 +209,10 @@ export class CommToolsData {
         return map;
     }
     /**
-     * Rewrite this {clearPaint} function under DrawToolCore
+     * Rewrite this {clearActiveSlice} function under DrawToolCore
      */
-    clearPaint() {
-        throw new Error("Child class must implement abstract clearPaint, currently you can find it in DrawToolCore.");
+    clearActiveSlice() {
+        throw new Error("Child class must implement abstract clearActiveSlice, currently you can find it in DrawToolCore.");
     }
     /**
      * Rewrite this {undoLastPainting} function under DrawToolCore
@@ -329,16 +227,10 @@ export class CommToolsData {
         throw new Error("Child class must implement abstract redoLastPainting, currently you can find it in DrawToolCore.");
     }
     /**
-     * Rewrite this {clearStoreImages} function under NrrdTools
+     * Rewrite this {clearActiveLayer} function under NrrdTools
      */
-    clearStoreImages() {
-        throw new Error("Child class must implement abstract clearStoreImages, currently you can find it in NrrdTools.");
-    }
-    /**
-     * Rewrite this {createEmptyPaintImage} function under NrrdTools
-     */
-    createEmptyPaintImage(dimensions, paintImages) {
-        throw new Error("Child class must implement abstract clearStoreImages, currently you can find it in NrrdTools.");
+    clearActiveLayer() {
+        throw new Error("Child class must implement abstract clearActiveLayer, currently you can find it in NrrdTools.");
     }
     /**
      * Rewrite this {resizePaintArea} function under NrrdTools
@@ -388,6 +280,21 @@ export class CommToolsData {
     resetLayerCanvas() {
         throw new Error("Child class must implement abstract resetLayerCanvas, currently you can find it in NrrdTools.");
     }
+    /**
+     * Enter sphere mode: clear all layer canvases (not MaskVolume),
+     * hide all mask data so sphere overlay is the only visible annotation.
+     * Rewrite this under NrrdTools.
+     */
+    enterSphereMode() {
+        throw new Error("Child class must implement abstract enterSphereMode, currently you can find it in NrrdTools.");
+    }
+    /**
+     * Exit sphere mode: clear sphere canvas overlay, reload all layer
+     * MaskVolume data back onto canvases. Rewrite this under NrrdTools.
+     */
+    exitSphereMode() {
+        throw new Error("Child class must implement abstract exitSphereMode, currently you can find it in NrrdTools.");
+    }
     /**
      * Rewrite this {setSyncsliceNum} function under NrrdTools
      */
@@ -401,13 +308,13 @@ export class CommToolsData {
         throw new Error("Child class must implement abstract redrawDisplayCanvas, currently you can find it in NrrdTools.");
     }
     /**
-     * Get a painted mask image (IPaintImage) based on current axis and input slice index.
+     * Get a painted mask image based on current axis and input slice index.
      *
-     * Phase 3: Reads directly from MaskVolume (no caching needed — reads are fast).
+     * Phase 3: Reads directly from MaskVolume.
      *
      * @param axis "x" | "y" | "z"
      * @param sliceIndex number
-     * @returns IPaintImage with the mask for the given slice, or undefined if not found
+     * @returns Object with index and image, or undefined
      */
     filterDrawedImage(axis, sliceIndex) {
         try {
@@ -419,7 +326,7 @@ export class CommToolsData {
                         // Sagittal: width = depth (Z), height = height (Y)
                         : [dims.depth, dims.height];
                 const imageData = new ImageData(w, h);
-                const channelVis = this.gui_states.channelVisibility[this.gui_states.layer];
+                const channelVis = this.gui_states.layerChannel.channelVisibility[this.gui_states.layerChannel.layer];
                 volume.renderLabelSliceInto(sliceIndex, axis, imageData, channelVis);
                 return { index: sliceIndex, image: imageData };
             }
@@ -441,7 +348,7 @@ export class CommToolsData {
      */
     getOrCreateSliceBuffer(axis) {
         try {
-            const vol = this.getVolumeForLayer(this.nrrd_states.layers[0]);
+            const vol = this.getVolumeForLayer(this.nrrd_states.image.layers[0]);
             const dims = vol.getDimensions();
             const [w, h] = axis === "z" ? [dims.width, dims.height] :
                 axis === "y" ? [dims.width, dims.depth] :
@@ -464,7 +371,7 @@ export class CommToolsData {
     /**
      * Render a layer's slice into a reusable buffer and draw to the target canvas.
      *
-     * Uses MaskVolume.getSliceRawImageDataInto() for zero-allocation rendering.
+     * Uses MaskVolume.renderLabelSliceInto() for zero-allocation rendering.
      * The caller should obtain the buffer via getOrCreateSliceBuffer() and reuse
      * it across multiple layer renders.
      *
@@ -482,16 +389,26 @@ export class CommToolsData {
             if (!volume)
                 return;
             // Get channel visibility for this layer
-            const channelVis = this.gui_states.channelVisibility[layer];
+            const channelVis = this.gui_states.layerChannel.channelVisibility[layer];
             // Render label slice at full alpha — globalAlpha applied during compositeAllLayers
             volume.renderLabelSliceInto(sliceIndex, axis, buffer, channelVis, 1.0);
             this.setEmptyCanvasSize(axis);
             this.protectedData.ctxes.emptyCtx.putImageData(buffer, 0, 0);
-            // No flip: MaskVolume stores in source coordinates matching the Three.js
-            // slice convention.  Applying a display flip here would invert cross-axis
-            // slice indices (e.g. coronal 220 → 228 for a 448-slice volume).
             targetCtx.imageSmoothingEnabled = false;
+            // Coronal (axis='y') Z-flip: vertically flip the rendered mask to match
+            // the Z-flip applied during the write path (syncLayerSliceData).
+            // Same pattern as SphereTool.refreshSphereCanvas('y') scale(1,-1).
+            // Same-view: write_flip + read_flip = identity (correct).
+            // Cross-view (sagittal↔coronal): aligns Z-axis direction (fixes flip bug).
+            if (axis === 'y') {
+                targetCtx.save();
+                targetCtx.scale(1, -1);
+                targetCtx.translate(0, -scaledHeight);
+            }
             targetCtx.drawImage(this.protectedData.canvases.emptyCanvas, 0, 0, scaledWidth, scaledHeight);
+            if (axis === 'y') {
+                targetCtx.restore();
+            }
         }
         catch (err) {
             // Slice out of bounds or volume not ready — skip silently
@@ -540,13 +457,13 @@ export class CommToolsData {
      */
     compositeAllLayers() {
         const masterCtx = this.protectedData.ctxes.drawingLayerMasterCtx;
-        const width = this.nrrd_states.changedWidth;
-        const height = this.nrrd_states.changedHeight;
+        const width = this.nrrd_states.view.changedWidth;
+        const height = this.nrrd_states.view.changedHeight;
         masterCtx.clearRect(0, 0, width, height);
         // Master stores full-alpha composite; globalAlpha is applied once in
         // start() when drawing master to drawingCtx (single point of control).
-        for (const layerId of this.nrrd_states.layers) {
-            if (!this.gui_states.layerVisibility[layerId])
+        for (const layerId of this.nrrd_states.image.layers) {
+            if (!this.gui_states.layerChannel.layerVisibility[layerId])
                 continue;
             const target = this.protectedData.layerTargets.get(layerId);
             if (target)

package/dist/Utils/segmentation/CommToolsData.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/DragOperator.d.ts

@@ -1,4 +1,6 @@
-import { IDragOpts, IDrawingEvents, IProtected, IGUIStates, INrrdStates } from "./coreTools/coreType";
+import { IDragOpts, IDrawingEvents, IProtected } from "./coreTools/coreType";
+import { NrrdState } from "./coreTools/NrrdState";
+import { GuiState } from "./coreTools/GuiState";
 import type { EventRouter } from "./eventRouter";
 export declare class DragOperator {
     container: HTMLElement;
@@ -16,10 +18,16 @@ export declare class DragOperator {
     private setEmptyCanvasSize;
     private getOrCreateSliceBuffer;
     private renderSliceToCanvas;
+    private refreshSphereOverlayCb;
     private eventRouter;
-    constructor(container: HTMLElement, nrrd_sates: INrrdStates, gui_states: IGUIStates, protectedData: IProtected, drawingPrameters: IDrawingEvents, setSyncsliceNum: () => void, setIsDrawFalse: (target: number) => void, flipDisplayImageByAxis: () => void, setEmptyCanvasSize: (axis?: "x" | "y" | "z") => void, getOrCreateSliceBuffer: (axis: "x" | "y" | "z") => ImageData | null, renderSliceToCanvas: (layer: string, axis: "x" | "y" | "z", sliceIndex: number, buffer: ImageData, targetCtx: CanvasRenderingContext2D, scaledWidth: number, scaledHeight: number) => void);
+    constructor(container: HTMLElement, nrrd_sates: NrrdState, gui_states: GuiState, protectedData: IProtected, drawingPrameters: IDrawingEvents, setSyncsliceNum: () => void, setIsDrawFalse: (target: number) => void, flipDisplayImageByAxis: () => void, setEmptyCanvasSize: (axis?: "x" | "y" | "z") => void, getOrCreateSliceBuffer: (axis: "x" | "y" | "z") => ImageData | null, renderSliceToCanvas: (layer: string, axis: "x" | "y" | "z", sliceIndex: number, buffer: ImageData, targetCtx: CanvasRenderingContext2D, scaledWidth: number, scaledHeight: number) => void);
     private init;
     setShowDragNumberDiv(sliceIndexContainer: HTMLDivElement): void;
+    /**
+     * Set the sphere overlay refresh callback.
+     * Called by NrrdTools after DrawToolCore is initialized.
+     */
+    setRefreshSphereOverlay(cb: () => void): void;
     /**
      * Set the EventRouter reference for centralized event handling.
      * Called by NrrdTools/DrawToolCore after EventRouter is initialized.

package/dist/Utils/segmentation/DragOperator.js

@@ -13,6 +13,7 @@ export class DragOperator {
             handleOnDragMouseMove: (ev) => { },
         };
         this.sensitiveArray = [];
+        this.refreshSphereOverlayCb = null;
         // EventRouter for centralized event handling
         this.eventRouter = null;
         this.configDragMode = () => {
@@ -41,7 +42,7 @@ export class DragOperator {
         this.init();
     }
     init() {
-        for (let i = 0; i < this.gui_states.max_sensitive; i++) {
+        for (let i = 0; i < this.gui_states.viewConfig.max_sensitive; i++) {
             this.sensitiveArray.push((i + 1) / 20);
         }
         const dragEffectCanvases = {
@@ -62,12 +63,20 @@ export class DragOperator {
             setEmptyCanvasSize: (axis) => this.setEmptyCanvasSize(axis),
             getOrCreateSliceBuffer: (axis) => this.getOrCreateSliceBuffer(axis),
             renderSliceToCanvas: (layer, axis, sliceIndex, buffer, targetCtx, w, h) => this.renderSliceToCanvas(layer, axis, sliceIndex, buffer, targetCtx, w, h),
+            refreshSphereOverlay: () => { var _a; return (_a = this.refreshSphereOverlayCb) === null || _a === void 0 ? void 0 : _a.call(this); },
         }, this.showDragNumberDiv, dragEffectCanvases);
     }
     setShowDragNumberDiv(sliceIndexContainer) {
         this.showDragNumberDiv = sliceIndexContainer;
         this.dragSliceTool.setShowDragNumberDiv(sliceIndexContainer);
     }
+    /**
+     * Set the sphere overlay refresh callback.
+     * Called by NrrdTools after DrawToolCore is initialized.
+     */
+    setRefreshSphereOverlay(cb) {
+        this.refreshSphereOverlayCb = cb;
+    }
     /**
      * Set the EventRouter reference for centralized event handling.
      * Called by NrrdTools/DrawToolCore after EventRouter is initialized.
@@ -79,13 +88,14 @@ export class DragOperator {
         this.eventRouter.subscribeModeChange((prevMode, newMode) => {
             const prev = prevMode;
             const next = newMode;
-            // When entering draw or contrast mode, remove drag mode
-            if (next === 'draw' || next === 'contrast') {
+            // When entering draw, contrast, or crosshair mode, remove drag mode
+            if (next === 'draw' || next === 'contrast' || next === 'crosshair') {
                 this.removeDragMode();
             }
-            // When leaving draw or contrast mode (returning to idle), restore drag mode
-            if ((prev === 'draw' || prev === 'contrast') && next === 'idle') {
-                if (!this.gui_states.sphere) {
+            // When leaving draw, contrast, or crosshair mode (returning to idle), restore drag mode
+            // Do NOT restore if sphere mode is active
+            if ((prev === 'draw' || prev === 'contrast' || prev === 'crosshair') && next === 'idle') {
+                if (!this.gui_states.mode.sphere) {
                     this.configDragMode();
                 }
             }
@@ -104,7 +114,7 @@ export class DragOperator {
                 this.dragPrameters.y = ev.offsetY / this.dragPrameters.h;
                 this.container.addEventListener("pointermove", this.dragPrameters.handleOnDragMouseMove, false);
                 this.dragPrameters.sensivity =
-                    this.sensitiveArray[this.gui_states.dragSensitivity - 1];
+                    this.sensitiveArray[this.gui_states.viewConfig.dragSensitivity - 1];
             }
         };
         this.dragPrameters.handleOnDragMouseMove = throttle((ev) => {
@@ -118,7 +128,7 @@ export class DragOperator {
             }
             this.updateIndex(this.dragPrameters.move);
             (opts === null || opts === void 0 ? void 0 : opts.getSliceNum) &&
-                opts.getSliceNum(this.nrrd_states.currentIndex, this.nrrd_states.contrastNum);
+                opts.getSliceNum(this.nrrd_states.view.currentSliceIndex, this.nrrd_states.view.contrastNum);
             this.dragPrameters.y = ev.offsetY / this.dragPrameters.h;
         }, this.dragPrameters.sensivity * 200);
         this.dragPrameters.handleOnDragMouseUp = (ev) => {

package/dist/Utils/segmentation/DragOperator.js.map

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package/dist/Utils/segmentation/DrawToolCore.d.ts

@@ -1,4 +1,4 @@
-import { IConvertObjType, IDrawingEvents, IContrastEvents, IDrawOpts, IPaintImages } from "./coreTools/coreType";
+import { IConvertObjType, IDrawingEvents, IContrastEvents, IDrawOpts } from "./coreTools/coreType";
 import { CommToolsData } from "./CommToolsData";
 import { EventRouter } from "./eventRouter";
 import { SphereTool } from "./tools/SphereTool";
@@ -6,6 +6,8 @@ import { CrosshairTool } from "./tools/CrosshairTool";
 import { ContrastTool } from "./tools/ContrastTool";
 import { ZoomTool } from "./tools/ZoomTool";
 import { EraserTool } from "./tools/EraserTool";
+import { PanTool } from "./tools/PanTool";
+import { DrawingTool } from "./tools/DrawingTool";
 import { ImageStoreHelper } from "./tools/ImageStoreHelper";
 import { UndoManager } from "./core";
 export declare class DrawToolCore extends CommToolsData {
@@ -16,17 +18,17 @@ export declare class DrawToolCore extends CommToolsData {
     eraserUrls: string[];
     pencilUrls: string[];
     undoManager: UndoManager;
-    /** Snapshot of the active layer's slice captured on mouse-down (before drawing). */
-    private preDrawSlice;
-    private preDrawAxis;
-    private preDrawSliceIndex;
     protected eventRouter: EventRouter | null;
     protected sphereTool: SphereTool;
     protected crosshairTool: CrosshairTool;
     protected contrastTool: ContrastTool;
     protected zoomTool: ZoomTool;
     protected eraserTool: EraserTool;
+    protected panTool: PanTool;
+    protected drawingTool: DrawingTool;
     protected imageStoreHelper: ImageStoreHelper;
+    /** Slice index recorded when paintOnCanvas() starts, guards stale-click */
+    private paintSliceIndex;
     start: () => void;
     constructor(container: HTMLElement, options?: {
         layers?: string[];
@@ -37,15 +39,13 @@ export declare class DrawToolCore extends CommToolsData {
     setPencilIconUrls(urls: string[]): void;
     private setCurrentLayer;
     draw(opts?: IDrawOpts): void;
-    drawCalSphereDown(x: number, y: number, sliceIndex: number, cal_position: "tumour" | "skin" | "nipple" | "ribcage"): void;
-    drawCalSphereUp(): void;
     private zoomActionAfterDrawSphere;
     private clearSpherePrintStoreImages;
     private paintOnCanvas;
+    /** Extracted from paintOnCanvas() — handles sphere placement on left-click */
+    private handleSphereClick;
     /*************************************May consider to move outside *******************************************/
     private drawLine;
-    private drawLinesOnLayer;
-    private paintOnCanvasLayer;
     private initAllCanvas;
     private useEraser;
     configMouseZoomWheel(): (e: WheelEvent) => void;
@@ -58,6 +58,11 @@ export declare class DrawToolCore extends CommToolsData {
     private configMouseSphereWheel;
     drawCalculatorSphere(radius: number): void;
     drawSphere(mouseX: number, mouseY: number, radius: number): void;
+    /**
+     * Refresh sphere canvas from sphereMaskVolume for the current slice/axis.
+     * Called after view changes (slice switch, zoom, contrast, axis switch).
+     */
+    refreshSphereOverlay(): void;
     /**
      * Convert cursor point between axis views.
      * Delegated to CrosshairTool.
@@ -68,13 +73,17 @@ export declare class DrawToolCore extends CommToolsData {
     getRestLayer(): string[];
     /**************************** Undo/Redo functions (Phase 6 — Delta-based) ****************************/
     /**
-     * Clear mask on current slice canvas.
+     * Clear the mask on the current slice canvas for the active layer ONLY.
+     *
+     * This method only clears the active layer's MaskVolume slice data for the
+     * currently viewed slice index. Other slices in the same layer remain intact.
+     * Other background layers are also left untouched.
+     * After clearing, all layer canvases are re-rendered from the `MaskVolume`
+     * to keep the visuals in sync.
      *
-     * Phase 2: Clears the MaskVolume slice for all three layers,
-     * re-stores, and notifies external via getMask callback with clearFlag=true.
-     * Phase 6: Also records a MaskDelta for undo support.
+     * The operation is recorded to the UndoManager to allow for user rollback.
      */
-    clearPaint(): void;
+    clearActiveSlice(): void;
     /**
      * Undo the last drawing operation on the active layer.
      * Restores the MaskVolume slice to its pre-draw state, re-renders
@@ -93,10 +102,7 @@ export declare class DrawToolCore extends CommToolsData {
      */
     private applyUndoRedoToCanvas;
     /****************************Store images (delegated to ImageStoreHelper)****************************************************/
-    storeImageToAxis(index: number, paintedImages: IPaintImages, imageData: ImageData, axis?: "x" | "y" | "z"): void;
-    storeAllImages(index: number, layer: string): void;
-    storeImageToLayer(index: number, canvas: HTMLCanvasElement, paintedImages: IPaintImages): ImageData;
-    storeEachLayerImage(index: number, layer: string): void;
+    syncLayerSliceData(index: number, layer: string): void;
     /******************************** Utils gui related functions (delegated to ContrastTool) ***************************************/
     setupConrastEvents(callback: (step: number, towards: "horizental" | "vertical") => void): void;
     configContrastDragMode: () => void;