copper3d 2.2.3 → 3.0.1

package/dist/Utils/segmentation/CommToolsData.js

@@ -1,8 +1,25 @@
+import { MaskVolume } from "./core/index";
 import { switchPencilIcon } from "../utils";
 import { enableDownload } from "./coreTools/divControlTools";
 export class CommToolsData {
-    constructor(container, mainAreaContainer) {
+    constructor(container, mainAreaContainer, options) {
+        var _a;
         this.baseCanvasesSize = 1;
+        // Reusable ImageData buffer for zero-allocation slice rendering
+        this._reusableSliceBuffer = null;
+        this._reusableBufferWidth = 0;
+        this._reusableBufferHeight = 0;
+        /** Whether the keyboard-config dialog is open (suppresses all shortcuts). */
+        this._configKeyBoard = false;
+        /** Active keyboard shortcut bindings. */
+        this._keyboardSettings = {
+            draw: "Shift",
+            undo: "z",
+            redo: "y",
+            contrast: ["Control", "Meta"],
+            crosshair: "s",
+            mouseWheel: "Scroll:Zoom",
+        };
         this.nrrd_states = {
             originWidth: 0,
             originHeight: 0,
@@ -24,10 +41,8 @@ export class CommToolsData {
             dimensions: [],
             loadMaskJson: false,
             ratios: { x: 1, y: 1, z: 1 },
-            sharedPlace: { x: [-1], y: [-1], z: [-1] },
             contrastNum: 0,
             showContrast: false,
-            enableCursorChoose: false,
             isCursorSelect: false,
             cursorPageX: 0,
             cursorPageY: 0,
@@ -51,16 +66,10 @@ export class CommToolsData {
             previousPanelL: -99999,
             previousPanelT: -99999,
             switchSliceFlag: false,
-            labels: ["label1", "label2", "label3"],
-            configKeyBoard: false,
-            keyboardSettings: {
-                draw: "Shift",
-                undo: "z",
-                contrast: ["Control", "Meta"],
-                crosshair: "s",
-                mouseWheel: "Scroll:Zoom",
-            },
-            getMask: (mask, sliceId, label, width, height, clearAllFlag) => { },
+            layers: ["layer1", "layer2", "layer3"],
+            getMask: (sliceData, layerId, channelId, sliceIndex, axis, width, height, clearFlag) => { },
+            onClearLayerVolume: (layerId) => { },
+            onChannelColorChanged: () => { },
             getSphere: (sphereOrigin, sphereRadius) => { },
             getCalculateSpherePositions: (tumourSphereOrigin, skinSphereOrigin, ribSphereOrigin, nippleSphereOrigin, aixs) => { },
             drawStartPos: { x: 1, y: 1 },
@@ -89,15 +98,15 @@ export class CommToolsData {
             mainAreaSize: 3,
             dragSensitivity: 75,
             Eraser: false,
-            globalAlpha: 0.7,
+            globalAlpha: 0.6,
             lineWidth: 2,
             color: "#f50a33",
-            segmentation: true,
+            pencil: true,
             fillColor: "#00ff00",
             brushColor: "#00ff00",
-            brushAndEraserSize: 15,
+            brushAndEraserSize: 10,
             cursor: "dot",
-            label: "label1",
+            layer: "layer1",
             cal_distance: "tumour",
             sphere: false,
             calculator: false,
@@ -120,6 +129,9 @@ export class CommToolsData {
             undo: () => {
                 this.undoLastPainting();
             },
+            redo: () => {
+                this.redoLastPainting();
+            },
             downloadCurrentMask: () => {
                 const config = {
                     axis: this.protectedData.axis,
@@ -136,8 +148,31 @@ export class CommToolsData {
                 this.resizePaintArea(this.nrrd_states.sizeFoctor);
                 this.resetPaintAreaUIPosition();
             },
+            activeChannel: 1,
+            layerVisibility: { layer1: true, layer2: true, layer3: true },
+            channelVisibility: {
+                layer1: { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
+                layer2: { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
+                layer3: { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
+            },
         };
-        const canvases = this.generateCanvases();
+        const layers = (_a = options === null || options === void 0 ? void 0 : options.layers) !== null && _a !== void 0 ? _a : ["layer1", "layer2", "layer3"];
+        if (layers.length > 10) {
+            console.warn(`CommToolsData: ${layers.length} layers requested; recommended maximum is 10.`);
+        }
+        // Override the default states with the actual layer list
+        this.nrrd_states.layers = layers;
+        this.gui_states.layerVisibility = Object.fromEntries(layers.map((id) => [id, true]));
+        this.gui_states.channelVisibility = Object.fromEntries(layers.map((id) => [
+            id,
+            { 1: true, 2: true, 3: true, 4: true, 5: true, 6: true, 7: true, 8: true },
+        ]));
+        const systemCanvases = this.generateSystemCanvases();
+        const layerTargets = this.generateLayerTargets(layers);
+        // Get NRRD dimensions (will be set later when NRRD loads)
+        // Default to 1x1x1 for now, will be re-initialized in NrrdTools when dimensions are known
+        const dims = this.nrrd_states.dimensions;
+        const [width, height, depth] = dims.length === 3 ? dims : [1, 1, 1];
         this.protectedData = {
             container,
             mainAreaContainer,
@@ -147,50 +182,130 @@ export class CommToolsData {
             skipSlicesDic: {},
             currentShowingSlice: undefined,
             mainPreSlices: undefined,
-            Is_Shift_Pressed: false,
-            Is_Ctrl_Pressed: false,
             Is_Draw: false,
             axis: "z",
             maskData: {
-                // used to store one label all marks
-                paintImagesLabel1: { x: [], y: [], z: [] },
-                paintImagesLabel2: { x: [], y: [], z: [] },
-                paintImagesLabel3: { x: [], y: [], z: [] },
-                // used to store display marks with multiple labels
-                paintImages: { x: [], y: [], z: [] },
+                // Volumetric storage (Phase 3 — only storage mechanism)
+                volumes: layers.reduce((acc, id) => {
+                    acc[id] = new MaskVolume(width, height, depth, 1);
+                    return acc;
+                }, {}),
             },
+            layerTargets,
             canvases: {
+                /**
+                 * Caches raw image data from the current slice.
+                 * Used as a source for zoom/pan operations to avoid repeated decoding.
+                 * Initialized as null, set in NrrdTools.ts.
+                 */
                 originCanvas: null,
-                drawingCanvas: canvases[0],
-                displayCanvas: canvases[1],
-                drawingCanvasLayerMaster: canvases[2],
-                drawingCanvasLayerOne: canvases[3],
-                drawingCanvasLayerTwo: canvases[4],
-                drawingCanvasLayerThree: canvases[5],
-                drawingSphereCanvas: canvases[6],
-                emptyCanvas: canvases[7],
+                /**
+                 * Top-most interaction layer.
+                 * Captures mouse/pen events and displays real-time drawing strokes
+                 * before they are committed to a specific layer.
+                 */
+                drawingCanvas: systemCanvases.drawingCanvas,
+                /**
+                 * Background layer displaying the actual medical image slice (CT/MRI).
+                 * This is the "base" image the user sees.
+                 */
+                displayCanvas: systemCanvases.displayCanvas,
+                /**
+                 * Composite display layer.
+                 * Merges all segmentation layers for unified visualization
+                 * on top of the medical image.
+                 */
+                drawingCanvasLayerMaster: systemCanvases.drawingCanvasLayerMaster,
+                /**
+                 * Dedicated layer for 3D Sphere tool visualization.
+                 * Kept separate to allow independent rendering of sphere UI elements.
+                 */
+                drawingSphereCanvas: systemCanvases.drawingSphereCanvas,
+                /**
+                 * Off-screen scratchpad canvas.
+                 * Used for internal image processing, scaling, and format conversion.
+                 */
+                emptyCanvas: systemCanvases.emptyCanvas,
             },
             ctxes: {
-                drawingCtx: canvases[0].getContext("2d"),
-                displayCtx: canvases[1].getContext("2d"),
-                drawingLayerMasterCtx: canvases[2].getContext("2d"),
-                drawingLayerOneCtx: canvases[3].getContext("2d"),
-                drawingLayerTwoCtx: canvases[4].getContext("2d"),
-                drawingLayerThreeCtx: canvases[5].getContext("2d"),
-                drawingSphereCtx: canvases[6].getContext("2d"),
-                emptyCtx: canvases[7].getContext("2d", {
+                drawingCtx: systemCanvases.drawingCanvas.getContext("2d"),
+                displayCtx: systemCanvases.displayCanvas.getContext("2d"),
+                drawingLayerMasterCtx: systemCanvases.drawingCanvasLayerMaster.getContext("2d"),
+                drawingSphereCtx: systemCanvases.drawingSphereCanvas.getContext("2d"),
+                emptyCtx: systemCanvases.emptyCanvas.getContext("2d", {
                     willReadFrequently: true,
                 }),
             },
         };
     }
-    generateCanvases() {
-        const canvasArr = [];
-        for (let i = 0; i < 8; i++) {
+    // ── Volume Accessor Helpers (Phase 2) ──────────────────────────────────
+    /**
+     * Get MaskVolume for a specific layer
+     *
+     * @param layer - Layer name: "layer1", "layer2", or "layer3"
+     * @returns MaskVolume instance for the specified layer
+     *
+     * @example
+     * ```ts
+     * const volume = this.getVolumeForLayer("layer1");
+     * volume.setVoxel(x, y, z, 255);
+     * ```
+     */
+    getVolumeForLayer(layer) {
+        const { volumes } = this.protectedData.maskData;
+        const vol = volumes[layer];
+        if (vol)
+            return vol;
+        const firstLayerId = this.nrrd_states.layers[0];
+        console.warn(`CommToolsData: unknown layer "${layer}", falling back to "${firstLayerId}"`);
+        return volumes[firstLayerId];
+    }
+    /**
+     * Get MaskVolume for the currently active layer
+     *
+     * @returns MaskVolume instance for the current layer
+     *
+     * @example
+     * ```ts
+     * const volume = this.getCurrentVolume();
+     * const slice = volume.getSliceImageData(50, 'z');
+     * ```
+     */
+    getCurrentVolume() {
+        return this.getVolumeForLayer(this.gui_states.layer);
+    }
+    /**
+     * Get all three MaskVolume instances
+     *
+     * @returns Object containing all three layer volumes
+     *
+     * @example
+     * ```ts
+     * const { layer1, layer2, layer3 } = this.getAllVolumes();
+     * layer1.clear();
+     * ```
+     */
+    getAllVolumes() {
+        return this.protectedData.maskData.volumes;
+    }
+    // ───────────────────────────────────────────────────────────────────────
+    generateSystemCanvases() {
+        return {
+            drawingCanvas: document.createElement("canvas"),
+            displayCanvas: document.createElement("canvas"),
+            drawingCanvasLayerMaster: document.createElement("canvas"),
+            drawingSphereCanvas: document.createElement("canvas"),
+            emptyCanvas: document.createElement("canvas"),
+        };
+    }
+    generateLayerTargets(layerIds) {
+        const map = new Map();
+        for (const id of layerIds) {
             const canvas = document.createElement("canvas");
-            canvasArr.push(canvas);
+            const ctx = canvas.getContext("2d");
+            map.set(id, { canvas, ctx });
         }
-        return canvasArr;
+        return map;
     }
     /**
      * Rewrite this {clearPaint} function under DrawToolCore
@@ -205,15 +320,15 @@ export class CommToolsData {
         throw new Error("Child class must implement abstract undoLastPainting, currently you can find it in DrawToolCore.");
     }
     /**
-     * Rewrite this {clearStoreImages} function under NrrdTools
+     * Rewrite this {redoLastPainting} function under DrawToolCore
      */
-    clearStoreImages() {
-        throw new Error("Child class must implement abstract clearStoreImages, currently you can find it in NrrdTools.");
+    redoLastPainting() {
+        throw new Error("Child class must implement abstract redoLastPainting, currently you can find it in DrawToolCore.");
     }
     /**
-     * Rewrite this {createEmptyPaintImage} function under NrrdTools
+     * Rewrite this {clearStoreImages} function under NrrdTools
      */
-    createEmptyPaintImage(dimensions, paintImages) {
+    clearStoreImages() {
         throw new Error("Child class must implement abstract clearStoreImages, currently you can find it in NrrdTools.");
     }
     /**
@@ -277,17 +392,157 @@ export class CommToolsData {
         throw new Error("Child class must implement abstract redrawDisplayCanvas, currently you can find it in NrrdTools.");
     }
     /**
-     * Get a painted mask image (IPaintImage) based on current axis and input slice index.
+     * Get a painted mask image based on current axis and input slice index.
+     *
+     * Phase 3: Reads directly from MaskVolume.
      *
      * @param axis "x" | "y" | "z"
      * @param sliceIndex number
-     * @param paintedImages IPaintImages, All painted mask images.
-     * @returns
+     * @returns Object with index and image, or undefined
      */
-    filterDrawedImage(axis, sliceIndex, paintedImages) {
-        return paintedImages[axis].filter((item) => {
-            return item.index === sliceIndex;
-        })[0];
+    filterDrawedImage(axis, sliceIndex) {
+        try {
+            const volume = this.getCurrentVolume();
+            if (volume) {
+                const dims = volume.getDimensions();
+                const [w, h] = axis === 'z' ? [dims.width, dims.height]
+                    : axis === 'y' ? [dims.width, dims.depth]
+                        // Sagittal: width = depth (Z), height = height (Y)
+                        : [dims.depth, dims.height];
+                const imageData = new ImageData(w, h);
+                const channelVis = this.gui_states.channelVisibility[this.gui_states.layer];
+                volume.renderLabelSliceInto(sliceIndex, axis, imageData, channelVis);
+                return { index: sliceIndex, image: imageData };
+            }
+        }
+        catch (err) {
+            // Volume not ready or slice out of bounds
+        }
+        return undefined;
+    }
+    /**
+     * Get or create a reusable ImageData buffer for the given axis.
+     *
+     * Reuses the same buffer across multiple slice renders to avoid
+     * allocating a new ImageData per layer per slice switch.
+     * The buffer is only reallocated when slice dimensions change (axis switch).
+     *
+     * @param axis - Axis: "x", "y", or "z"
+     * @returns Reusable ImageData buffer with correct dimensions
+     */
+    getOrCreateSliceBuffer(axis) {
+        try {
+            const vol = this.getVolumeForLayer(this.nrrd_states.layers[0]);
+            const dims = vol.getDimensions();
+            const [w, h] = axis === "z" ? [dims.width, dims.height] :
+                axis === "y" ? [dims.width, dims.depth] :
+                    // Sagittal: width = depth (Z), height = height (Y)
+                    // Matches setEmptyCanvasSize('x') and MaskVolume.getSliceDimensions('x')
+                    [dims.depth, dims.height];
+            if (!this._reusableSliceBuffer ||
+                this._reusableBufferWidth !== w ||
+                this._reusableBufferHeight !== h) {
+                this._reusableSliceBuffer = new ImageData(w, h);
+                this._reusableBufferWidth = w;
+                this._reusableBufferHeight = h;
+            }
+            return this._reusableSliceBuffer;
+        }
+        catch (_a) {
+            return null; // Volume not ready
+        }
+    }
+    /**
+     * Render a layer's slice into a reusable buffer and draw to the target canvas.
+     *
+     * Uses MaskVolume.renderLabelSliceInto() for zero-allocation rendering.
+     * The caller should obtain the buffer via getOrCreateSliceBuffer() and reuse
+     * it across multiple layer renders.
+     *
+     * @param layer - Layer name: "layer1", "layer2", or "layer3"
+     * @param axis - Axis: "x", "y", or "z"
+     * @param sliceIndex - Slice index
+     * @param buffer - Reusable ImageData buffer (from getOrCreateSliceBuffer)
+     * @param targetCtx - Canvas context to draw the result onto
+     * @param scaledWidth - Target display width
+     * @param scaledHeight - Target display height
+     */
+    renderSliceToCanvas(layer, axis, sliceIndex, buffer, targetCtx, scaledWidth, scaledHeight) {
+        try {
+            const volume = this.getVolumeForLayer(layer);
+            if (!volume)
+                return;
+            // Get channel visibility for this layer
+            const channelVis = this.gui_states.channelVisibility[layer];
+            // Render label slice at full alpha — globalAlpha applied during compositeAllLayers
+            volume.renderLabelSliceInto(sliceIndex, axis, buffer, channelVis, 1.0);
+            this.setEmptyCanvasSize(axis);
+            this.protectedData.ctxes.emptyCtx.putImageData(buffer, 0, 0);
+            // No flip: MaskVolume stores in source coordinates matching the Three.js
+            // slice convention.  Applying a display flip here would invert cross-axis
+            // slice indices (e.g. coronal 220 → 228 for a 448-slice volume).
+            targetCtx.imageSmoothingEnabled = false;
+            targetCtx.drawImage(this.protectedData.canvases.emptyCanvas, 0, 0, scaledWidth, scaledHeight);
+        }
+        catch (err) {
+            // Slice out of bounds or volume not ready — skip silently
+        }
+    }
+    /**
+     * Invalidate the reusable buffer (e.g. when switching datasets).
+     * The buffer will be lazily recreated on next use.
+     */
+    invalidateSliceBuffer() {
+        this._reusableSliceBuffer = null;
+        this._reusableBufferWidth = 0;
+        this._reusableBufferHeight = 0;
+    }
+    /**
+     * Apply the same flip transform used by flipDisplayImageByAxis() to any
+     * canvas context.  This ensures mask overlays align with the flipped CT image.
+     *
+     * The flip is its own inverse (applying twice = identity), so it works for
+     * both directions: volume→display (rendering) and display→volume (storing).
+     *
+     * @param ctx    Target 2D context (must be wrapped in save/restore by caller).
+     * @param width  Canvas width in pixels.
+     * @param height Canvas height in pixels.
+     * @param axis   Current viewing axis.
+     */
+    applyMaskFlipForAxis(ctx, width, height, axis) {
+        switch (axis) {
+            case "x": // sagittal: flip both axes
+                ctx.scale(-1, -1);
+                ctx.translate(-width, -height);
+                break;
+            case "y": // coronal: flip vertically
+                ctx.scale(1, -1);
+                ctx.translate(0, -height);
+                break;
+            case "z": // axial: flip vertically
+                ctx.scale(1, -1);
+                ctx.translate(0, -height);
+                break;
+        }
+    }
+    /**
+     * Composite all layer canvases to the master display canvas.
+     * Only draws layers whose visibility is enabled.
+     */
+    compositeAllLayers() {
+        const masterCtx = this.protectedData.ctxes.drawingLayerMasterCtx;
+        const width = this.nrrd_states.changedWidth;
+        const height = this.nrrd_states.changedHeight;
+        masterCtx.clearRect(0, 0, width, height);
+        // Master stores full-alpha composite; globalAlpha is applied once in
+        // start() when drawing master to drawingCtx (single point of control).
+        for (const layerId of this.nrrd_states.layers) {
+            if (!this.gui_states.layerVisibility[layerId])
+                continue;
+            const target = this.protectedData.layerTargets.get(layerId);
+            if (target)
+                masterCtx.drawImage(target.canvas, 0, 0, width, height);
+        }
     }
 }
 //# sourceMappingURL=CommToolsData.js.map

package/dist/Utils/segmentation/CommToolsData.js.map

@@ -1 +1 @@
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package/dist/Utils/segmentation/DragOperator.d.ts

@@ -1,4 +1,5 @@
-import { IDragOpts, IDrawingEvents, IProtected, IGUIStates, INrrdStates, IPaintImage, IPaintImages } from "./coreTools/coreType";
+import { IDragOpts, IDrawingEvents, IProtected, IGUIStates, INrrdStates } from "./coreTools/coreType";
+import type { EventRouter } from "./eventRouter";
 export declare class DragOperator {
     container: HTMLElement;
     private dragPrameters;
@@ -8,20 +9,25 @@ export declare class DragOperator {
     private nrrd_states;
     private gui_states;
     private protectedData;
-    private dragEffectCanvases;
+    private dragSliceTool;
     private setSyncsliceNum;
     private setIsDrawFalse;
     private flipDisplayImageByAxis;
     private setEmptyCanvasSize;
-    private filterDrawedImage;
-    constructor(container: HTMLElement, nrrd_sates: INrrdStates, gui_states: IGUIStates, protectedData: IProtected, drawingPrameters: IDrawingEvents, setSyncsliceNum: () => void, setIsDrawFalse: (target: number) => void, flipDisplayImageByAxis: () => void, setEmptyCanvasSize: (axis?: "x" | "y" | "z") => void, filterDrawedImage: (axis: "x" | "y" | "z", sliceIndex: number, paintedImages: IPaintImages) => IPaintImage);
+    private getOrCreateSliceBuffer;
+    private renderSliceToCanvas;
+    private eventRouter;
+    constructor(container: HTMLElement, nrrd_sates: INrrdStates, gui_states: IGUIStates, protectedData: IProtected, drawingPrameters: IDrawingEvents, setSyncsliceNum: () => void, setIsDrawFalse: (target: number) => void, flipDisplayImageByAxis: () => void, setEmptyCanvasSize: (axis?: "x" | "y" | "z") => void, getOrCreateSliceBuffer: (axis: "x" | "y" | "z") => ImageData | null, renderSliceToCanvas: (layer: string, axis: "x" | "y" | "z", sliceIndex: number, buffer: ImageData, targetCtx: CanvasRenderingContext2D, scaledWidth: number, scaledHeight: number) => void);
     private init;
     setShowDragNumberDiv(sliceIndexContainer: HTMLDivElement): void;
+    /**
+     * Set the EventRouter reference for centralized event handling.
+     * Called by NrrdTools/DrawToolCore after EventRouter is initialized.
+     * Subscribes to mode changes to control drag mode.
+     */
+    setEventRouter(eventRouter: EventRouter): void;
     drag(opts?: IDragOpts): void;
     updateIndex(move: number): void;
-    private drawDragSlice;
-    private drawMaskToLabelCtx;
-    private cleanCanvases;
     updateShowNumDiv(contrastNum: number): void;
     updateCurrentContrastSlice(): any;
     configDragMode: () => void;