copper3d 1.15.23 → 2.0.1

package/dist/Utils/segmentation/NrrdTools.js.map

@@ -0,0 +1 @@
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package/dist/Utils/segmentation/coreTools/archive.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/Utils/segmentation/coreTools/archive.js

@@ -0,0 +1,23 @@
+// Not use this function now!!!
+import { saveFileAsJson } from "../../download";
+import { restructData, convertReformatDataToBlob, } from "../../workers/reformatSaveDataWorker";
+function verifyCanvasIsEmpty(canvas, protectedData) {
+    protectedData.canvases.emptyCanvas.width = canvas.width;
+    protectedData.canvases.emptyCanvas.height = canvas.height;
+    const validation = canvas.toDataURL() === protectedData.canvases.emptyCanvas.toDataURL();
+    return validation;
+}
+function exportData(nrrd_states, protectedData) {
+    let exportDataFormat = { x: [], y: [], z: [] };
+    window.alert("Export masks, starting!!!");
+    const masks = restructData(protectedData.maskData.paintImages.z, nrrd_states.nrrd_z_pixel, nrrd_states.nrrd_x_pixel, nrrd_states.nrrd_y_pixel);
+    const blob = convertReformatDataToBlob(masks);
+    if (blob) {
+        saveFileAsJson(blob, "copper3D_export data_z.json");
+        window.alert("Export masks successfully!!!");
+    }
+    else {
+        window.alert("Export failed!");
+    }
+}
+//# sourceMappingURL=archive.js.map

package/dist/Utils/segmentation/coreTools/archive.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"archive.js","sourceRoot":"","sources":["../../../../src/Utils/segmentation/coreTools/archive.ts"],"names":[],"mappings":"AAAA,+BAA+B;AAC/B,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAEhD,OAAO,EACL,YAAY,EACZ,yBAAyB,GAC1B,MAAM,sCAAsC,CAAC;AAC9C,SAAS,mBAAmB,CAAC,MAAW,EAAE,aAAkB;IAC1D,aAAa,CAAC,QAAQ,CAAC,WAAW,CAAC,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC;IACxD,aAAa,CAAC,QAAQ,CAAC,WAAW,CAAC,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC;IAE1D,MAAM,UAAU,GACd,MAAM,CAAC,SAAS,EAAE,KAAK,aAAa,CAAC,QAAQ,CAAC,WAAW,CAAC,SAAS,EAAE,CAAC;IAExE,OAAO,UAAU,CAAC;AACpB,CAAC;AAED,SAAS,UAAU,CAAC,WAAwB,EAAE,aAAyB;IACrE,IAAI,gBAAgB,GAAa,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC;IAEzD,MAAM,CAAC,KAAK,CAAC,2BAA2B,CAAC,CAAC;IAC1C,MAAM,KAAK,GAAG,YAAY,CACxB,aAAa,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,EACpC,WAAW,CAAC,YAAY,EACxB,WAAW,CAAC,YAAY,EACxB,WAAW,CAAC,YAAY,CACzB,CAAC;IACF,MAAM,IAAI,GAAG,yBAAyB,CAAC,KAAK,CAAC,CAAC;IAC9C,IAAI,IAAI,EAAE;QACR,cAAc,CAAC,IAAI,EAAE,6BAA6B,CAAC,CAAC;QACpD,MAAM,CAAC,KAAK,CAAC,8BAA8B,CAAC,CAAC;KAC9C;SAAM;QACL,MAAM,CAAC,KAAK,CAAC,gBAAgB,CAAC,CAAC;KAChC;AACH,CAAC"}

package/dist/Utils/segmentation/coreTools/coreType.d.ts

@@ -0,0 +1,206 @@
+interface ICommXYZ {
+    x: any;
+    y: any;
+    z: any;
+}
+interface ICommXY {
+    x: any;
+    y: any;
+}
+interface ISkipSlicesDictType {
+    [key: string]: any;
+}
+interface IDownloadImageConfig {
+    axis: "x" | "y" | "z";
+    currentIndex: number;
+    drawingCanvas: HTMLCanvasElement;
+    originWidth: number;
+    originHeight: number;
+}
+interface IConvertObjType {
+    currentIndex: number;
+    oldIndex: number;
+    convertCursorNumX: number;
+    convertCursorNumY: number;
+}
+interface IDragPrameters {
+    move: number;
+    y: number;
+    h: number;
+    sensivity: number;
+    handleOnDragMouseUp: (ev: MouseEvent) => void;
+    handleOnDragMouseDown: (ev: MouseEvent) => void;
+    handleOnDragMouseMove: (ev: MouseEvent) => void;
+}
+interface IDrawingEvents {
+    handleOnDrawingMouseDown: (ev: MouseEvent) => void;
+    handleOnDrawingMouseMove: (ev: MouseEvent) => void;
+    handleOnPanMouseMove: (ev: MouseEvent) => void;
+    handleOnDrawingMouseUp: (ev: MouseEvent) => void;
+    handleOnDrawingMouseLeave: (ev: MouseEvent) => void;
+    handleOnDrawingBrushCricleMove: (ev: MouseEvent) => void;
+    handleZoomWheel: (e: WheelEvent) => void;
+    handleSphereWheel: (e: WheelEvent) => void;
+}
+interface IPaintImages {
+    x: Array<IPaintImage>;
+    y: Array<IPaintImage>;
+    z: Array<IPaintImage>;
+}
+interface IPaintImage {
+    index: number;
+    image: ImageData;
+}
+interface IStoredPaintImages {
+    label1: IPaintImages;
+    label2: IPaintImages;
+    label3: IPaintImages;
+}
+type IMaskData = {
+    paintImagesLabel1: IPaintImages;
+    paintImagesLabel2: IPaintImages;
+    paintImagesLabel3: IPaintImages;
+    paintImages: IPaintImages;
+};
+interface IProtected {
+    container: HTMLElement;
+    mainAreaContainer: HTMLElement;
+    allSlicesArray: Array<ICommXYZ>;
+    displaySlices: Array<any>;
+    backUpDisplaySlices: Array<any>;
+    skipSlicesDic: ISkipSlicesDictType;
+    currentShowingSlice: any;
+    mainPreSlices: any;
+    Is_Shift_Pressed: boolean;
+    Is_Draw: boolean;
+    axis: "x" | "y" | "z";
+    maskData: IMaskData;
+    previousDrawingImage?: ImageData;
+    canvases: {
+        originCanvas: HTMLCanvasElement | any;
+        drawingCanvas: HTMLCanvasElement;
+        displayCanvas: HTMLCanvasElement;
+        drawingCanvasLayerMaster: HTMLCanvasElement;
+        drawingCanvasLayerOne: HTMLCanvasElement;
+        drawingCanvasLayerTwo: HTMLCanvasElement;
+        drawingSphereCanvas: HTMLCanvasElement;
+        drawingCanvasLayerThree: HTMLCanvasElement;
+        emptyCanvas: HTMLCanvasElement;
+    };
+    ctxes: {
+        displayCtx: CanvasRenderingContext2D;
+        drawingCtx: CanvasRenderingContext2D;
+        emptyCtx: CanvasRenderingContext2D;
+        drawingSphereCtx: CanvasRenderingContext2D;
+        drawingLayerMasterCtx: CanvasRenderingContext2D;
+        drawingLayerOneCtx: CanvasRenderingContext2D;
+        drawingLayerTwoCtx: CanvasRenderingContext2D;
+        drawingLayerThreeCtx: CanvasRenderingContext2D;
+    };
+}
+interface IGUIStates {
+    mainAreaSize: number;
+    dragSensitivity: number;
+    Eraser: boolean;
+    globalAlpha: number;
+    lineWidth: number;
+    color: string;
+    segmentation: true;
+    fillColor: string;
+    brushColor: string;
+    brushAndEraserSize: number;
+    cursor: string;
+    label: string;
+    sphere: boolean;
+    readyToUpdate: boolean;
+    defaultPaintCursor: string;
+    max_sensitive: number;
+    clear: () => void;
+    clearAll: () => void;
+    undo: () => void;
+    downloadCurrentMask: () => void;
+    resetZoom: () => void;
+}
+interface INrrdStates {
+    originWidth: number;
+    originHeight: number;
+    nrrd_x_mm: number;
+    nrrd_y_mm: number;
+    nrrd_z_mm: number;
+    nrrd_x_pixel: number;
+    nrrd_y_pixel: number;
+    nrrd_z_pixel: number;
+    changedWidth: number;
+    changedHeight: number;
+    oldIndex: number;
+    currentIndex: number;
+    maxIndex: number;
+    minIndex: number;
+    RSARatio: number;
+    voxelSpacing: number[];
+    spaceOrigin: number[];
+    dimensions: number[];
+    loadMaskJson: boolean;
+    ratios: ICommXYZ;
+    sharedPlace: ICommXYZ;
+    contrastNum: number;
+    showContrast: boolean;
+    enableCursorChoose: boolean;
+    isCursorSelect: boolean;
+    cursorPageX: number;
+    cursorPageY: number;
+    sphereOrigin: ICommXYZ;
+    spherePlanB: boolean;
+    sphereRadius: number;
+    Mouse_Over_x: number;
+    Mouse_Over_y: number;
+    Mouse_Over: boolean;
+    stepClear: number;
+    sizeFoctor: number;
+    clearAllFlag: boolean;
+    previousPanelL: number;
+    previousPanelT: number;
+    switchSliceFlag: boolean;
+    labels: ["label1", "label2", "label3"];
+    getMask: (mask: ImageData, sliceId: number, label: string, width: number, height: number, clearAllFlag: boolean) => void;
+    getSphere: (sphereOrigin: number[], sphereRadius: number) => void;
+    drawStartPos: ICommXY;
+}
+interface IDragOpts {
+    showNumber?: boolean;
+    getSliceNum?: (index: number, contrastNum: number) => void;
+}
+interface IDrawOpts {
+    getMaskData?: (mask: ImageData, sliceId: number, label: string, width: number, height: number, clearAllFlag?: boolean) => void;
+    getSphereData?: (sphereOrigin: number[], sphereRadius: number) => void;
+}
+type UndoLayerType = {
+    label1: Array<HTMLImageElement>;
+    label2: Array<HTMLImageElement>;
+    label3: Array<HTMLImageElement>;
+};
+interface IUndoType {
+    sliceIndex: number;
+    layers: UndoLayerType;
+}
+interface ICursorPage {
+    x: {
+        cursorPageX: number;
+        cursorPageY: number;
+        index: number;
+        updated: boolean;
+    };
+    y: {
+        cursorPageX: number;
+        cursorPageY: number;
+        index: number;
+        updated: boolean;
+    };
+    z: {
+        cursorPageX: number;
+        cursorPageY: number;
+        index: number;
+        updated: boolean;
+    };
+}
+export { ICommXYZ, ICommXY, IDownloadImageConfig, IConvertObjType, IDragPrameters, IDrawingEvents, IProtected, IGUIStates, IDragOpts, IDrawOpts, INrrdStates, IPaintImage, IPaintImages, IStoredPaintImages, ISkipSlicesDictType, IMaskData, IUndoType, ICursorPage, };

package/dist/Utils/segmentation/coreTools/coreType.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=coreType.js.map

package/dist/Utils/segmentation/coreTools/coreType.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"coreType.js","sourceRoot":"","sources":["../../../../src/Utils/segmentation/coreTools/coreType.ts"],"names":[],"mappings":""}

package/dist/Utils/segmentation/coreTools/divControlTools.d.ts

@@ -0,0 +1,19 @@
+import { IDownloadImageConfig } from "./coreType";
+/**
+ * A div for show the slice and contrast numbers on
+ * the top of container.
+ *
+ * @returns  div with absolute style
+ */
+declare function createShowSliceNumberDiv(): HTMLDivElement;
+/**
+ * set mouse to auto focus on the div
+ * @param container the operate container div
+ */
+declare function autoFocusDiv(container: HTMLDivElement): void;
+/**
+ * Enable download single slice as a png/jpg image
+ * @param config
+ */
+declare function enableDownload(config: IDownloadImageConfig): void;
+export { createShowSliceNumberDiv, autoFocusDiv, enableDownload };

package/dist/Utils/segmentation/coreTools/divControlTools.js

@@ -0,0 +1,48 @@
+/**
+ * A div for show the slice and contrast numbers on
+ * the top of container.
+ *
+ * @returns  div with absolute style
+ */
+function createShowSliceNumberDiv() {
+    const sliceNumberDiv = document.createElement("div");
+    sliceNumberDiv.className = "copper3d_sliceNumber";
+    sliceNumberDiv.style.position = "absolute";
+    sliceNumberDiv.style.zIndex = "100";
+    sliceNumberDiv.style.top = "20px";
+    sliceNumberDiv.style.left = "100px";
+    return sliceNumberDiv;
+}
+/**
+ * set mouse to auto focus on the div
+ * @param container the operate container div
+ */
+function autoFocusDiv(container) {
+    container.tabIndex = 10;
+    container.addEventListener("mouseover", () => {
+        container.focus();
+    });
+    container.style.outline = "none";
+}
+/**
+ * Enable download single slice as a png/jpg image
+ * @param config
+ */
+function enableDownload(config) {
+    let downloadCanvas = document.createElement("canvas");
+    let downloadImage = document.createElement("a");
+    downloadImage.href = "";
+    downloadImage.target = "_blank";
+    downloadImage.download = `slice_${config.axis}_#${config.currentIndex}`;
+    const downloadCtx = downloadCanvas.getContext("2d");
+    downloadCanvas.width = config.originWidth;
+    downloadCanvas.height = config.originHeight;
+    downloadCtx.drawImage(config.drawingCanvas, 0, 0, config.originWidth, config.originHeight);
+    downloadImage.href = downloadCanvas.toDataURL();
+    downloadImage.click();
+    //let javascript recycle this element
+    downloadCanvas = null;
+    downloadImage = null;
+}
+export { createShowSliceNumberDiv, autoFocusDiv, enableDownload };
+//# sourceMappingURL=divControlTools.js.map

package/dist/Utils/segmentation/coreTools/divControlTools.js.map

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package/dist/Utils/segmentation/coreTools/gui.d.ts

@@ -0,0 +1,123 @@
+import { GUI } from "dat.gui";
+import { IDrawingEvents, IGUIStates, IProtected, INrrdStates, IPaintImages, IPaintImage } from "./coreType";
+import { DragOperator } from "../DragOperator";
+interface IConfigGUI {
+    modeFolder: GUI;
+    dragOperator: DragOperator;
+    nrrd_states: INrrdStates;
+    gui_states: IGUIStates;
+    drawingCanvas: HTMLCanvasElement;
+    drawingPrameters: IDrawingEvents;
+    protectedData: IProtected;
+    eraserUrls: string[];
+    pencilUrls: string[];
+    mainPreSlices: any;
+    removeDragMode: () => void;
+    configDragMode: () => void;
+    clearPaint: () => void;
+    clearStoreImages: () => void;
+    updateSlicesContrast: (value: number, flag: string) => void;
+    setMainAreaSize: (factor: number) => void;
+    resetPaintAreaUIPosition: () => void;
+    resizePaintArea: (factor: number) => void;
+    repraintCurrentContrastSlice: () => void;
+    setSyncsliceNum: () => void;
+    resetLayerCanvas: () => void;
+    redrawDisplayCanvas: () => void;
+    reloadMaskToLabel: (paintImages: IPaintImages, ctx: CanvasRenderingContext2D) => void;
+    flipDisplayImageByAxis: () => void;
+    filterDrawedImage: (axis: "x" | "y" | "z", sliceIndex: number, paintedImages: IPaintImages) => IPaintImage;
+    setEmptyCanvasSize: (axis?: "x" | "y" | "z") => void;
+}
+declare function setupGui(configs: IConfigGUI): {
+    globalAlpha: {
+        name: string;
+        min: number;
+        max: number;
+        step: number;
+    };
+    segmentation: {
+        name: string;
+        onChange: () => void;
+    };
+    sphere: {
+        name: string;
+        onChange: () => void;
+    };
+    brushAndEraserSize: {
+        name: string;
+        min: number;
+        max: number;
+        step: number;
+        onChange: () => void;
+    };
+    Eraser: {
+        name: string;
+        onChange: () => void;
+    };
+    clear: {
+        name: string;
+    };
+    clearAll: {
+        name: string;
+    };
+    undo: {
+        name: string;
+    };
+    resetZoom: {
+        name: string;
+    };
+    windowHigh: {
+        name: string;
+        value: any;
+        min: any;
+        max: any;
+        step: number;
+        onChange: (value: number) => void;
+        onFinished: () => void;
+    };
+    advance: {
+        label: {
+            name: string;
+            value: string[];
+        };
+        cursor: {
+            name: string;
+            value: string[];
+        };
+        mainAreaSize: {
+            name: string;
+            min: number;
+            max: number;
+            step: number;
+            onFinished: null;
+        };
+        dragSensitivity: {
+            name: string;
+            min: number;
+            max: number;
+            step: number;
+        };
+        pencilSettings: {
+            lineWidth: {
+                name: string;
+                min: number;
+                max: number;
+                step: number;
+            };
+            color: {
+                name: string;
+            };
+            fillColor: {
+                name: string;
+            };
+        };
+        BrushSettings: {
+            brushColor: {
+                name: string;
+            };
+        };
+    };
+};
+declare function removeGuiFolderChilden(modeFolder: GUI): void;
+export { setupGui, removeGuiFolderChilden };