copilot-operator 0.1.19 → 0.1.22

package/dist/src/vcs/runPreflight.js

@@ -0,0 +1,286 @@
+/**
+ * Version control for a run, made ready on the run screen before anything opens the browser.
+ *
+ * From the feedback of 2026-10-02: the run screen named the right problem once per session, left the
+ * run buttons on, and told the operator to approve a list they could not see; and version control was
+ * only checked once the browser was open and the first task had begun. Version control should be light
+ * and never in the way: every problem comes with the fix, done from here, said exactly before it is
+ * done, and nothing about version control is left to find out after the browser opens.
+ *
+ * So the sessions of a run are grouped by repository — one problem is one problem, however many
+ * sessions share the repository — and each group says where it stands (the repository, its branch and
+ * HEAD, the base branch the plan asked for and its HEAD, the sessions, the input patterns, the matched
+ * files with status and size, the unrelated uncommitted files apart) and what can be done:
+ *
+ *   review-inputs       show the input files; changes nothing
+ *   snapshot-on-base    the starting snapshot on the base branch: that branch's tree plus the approved
+ *                       input files only, committed with a temporary index — no branch switched, the
+ *                       operator's checkout untouched. Every session of the run in that repository
+ *                       that starts from that branch starts from it; a chained one carries it on.
+ *   snapshot-here       the starting snapshot where the repository is, as the session page takes it
+ *   use-current-branch  the sessions start from the branch the repository is on instead
+ *   allow-snapshot      uncommitted changes become a starting snapshot to approve, instead of a refusal
+ *
+ * The run is refused before the browser opens while any group is not ready (see the service).
+ */
+import { join, resolve } from 'node:path';
+import { branchNameFrom, freeBranchName, git } from './git.js';
+import { commitOnto, dirtyBesidesInputs, inputSettings, inputSumsAt, missingInputPatterns } from './inputs.js';
+import { dirtyPolicy, takeSnapshot } from './snapshot.js';
+import { repoDirOf, vcsPreflight } from './taskVcs.js';
+import { artifactPatterns } from './artifacts.js';
+import { inScope } from './scope.js';
+const norm = (dir) => dir.trim().replace(/[\\/]+$/, '').replace(/\//g, '\\').toLowerCase();
+const short = (c) => (c ?? '').slice(0, 8);
+const names = (list) => list.map((s) => `"${s.name}"`).join(', ');
+/** The groups, one per repository, for the sessions of a run in run order. */
+export async function runVcsPreflight(sessions, allSessions) {
+    const byRepo = new Map();
+    for (const s of sessions) {
+        if (!s.vcs?.enabled || !repoDirOf(s))
+            continue;
+        const key = norm(repoDirOf(s));
+        byRepo.set(key, [...(byRepo.get(key) ?? []), s]);
+    }
+    const groups = [];
+    for (const list of byRepo.values())
+        groups.push(await groupFor(list, allSessions));
+    return groups;
+}
+async function groupFor(list, allSessions) {
+    const first = list[0];
+    const repoDir = repoDirOf(first);
+    const branchR = await git(repoDir, ['rev-parse', '--abbrev-ref', 'HEAD']);
+    const headR = await git(repoDir, ['rev-parse', '--verify', '--quiet', 'HEAD']);
+    const branch = branchR.ok && branchR.stdout !== 'HEAD' ? branchR.stdout : null;
+    const head = headR.ok && headR.stdout ? headR.stdout : null;
+    const startFrom = first.vcs?.startFrom ?? 'head';
+    const baseBranch = startFrom === 'branch' || startFrom === 'previous-session' ? first.vcs?.baseBranch?.trim() || 'main' : undefined;
+    const baseHead = baseBranch ? (await git(repoDir, ['rev-parse', '--verify', '--quiet', `refs/heads/${baseBranch}^{commit}`])).stdout || null : undefined;
+    const settings = inputSettings(first.vcs);
+    const sessions = list.map((s, i) => {
+        const sf = s.vcs?.startFrom ?? 'head';
+        const role = i === 0 ? 'first' : sf === 'previous-session' ? 'inherits' : sf === 'branch' && (s.vcs?.baseBranch?.trim() || 'main') === baseBranch && !s.vcsBaseCommit ? 'shares' : 'own';
+        return { id: s.id, name: s.name, startFrom: sf, started: !!s.vcsBaseCommit, role };
+    });
+    const pre = await vcsPreflight(first, allSessions);
+    const plan = pre.snapshot;
+    const inputs = (plan?.entries ?? []).filter((e) => e.input);
+    /*
+     * Every uncommitted file that is not an input, read from the tree itself: the snapshot's list stops at
+     * the first thing in the way (other changes beside the inputs) and would leave them out.
+     */
+    const inputPaths = new Set(inputs.map((e) => e.path));
+    const artifacts = artifactPatterns(first.vcs);
+    const reasons = new Map((plan?.entries ?? []).filter((e) => !e.input && e.reason).map((e) => [e.path, e.reason]));
+    const unrelated = pre.problem === 'off'
+        ? []
+        : (await dirtyBesidesInputs(repoDir, first.vcsStart)).other
+            .filter((path) => !inputPaths.has(path) && !(artifacts.length > 0 && inScope(path, artifacts)))
+            .map((path) => ({ path, ...(reasons.has(path) ? { reason: reasons.get(path) } : {}) }));
+    // Before anything is approved: a pattern that matches nothing is said here, not after the browser opens.
+    let problem = pre.ok ? undefined : pre.problem;
+    // Problems no approval or setting of version control's own can get past: they need the operator.
+    let blocking = false;
+    if (!first.vcsBaseCommit && settings) {
+        const topR = await git(repoDir, ['rev-parse', '--show-toplevel']);
+        const missing = topR.ok ? await missingInputPatterns(first, repoDir, resolve(topR.stdout), allSessions) : [];
+        if (missing.length > 0) {
+            blocking = true;
+            problem = `the input file pattern(s) ${missing.map((m) => `"${m}"`).join(', ')} match no file in the project: put the files in, or correct "Input files" on the session's page.`;
+        }
+    }
+    /*
+     * The branches the sessions name, before the browser opens rather than at their first task: a
+     * branch to carry on that is not there, a base branch that is not there.
+     */
+    for (const s of list) {
+        if (s.vcsBaseCommit)
+            continue;
+        const named = s.vcs?.startFrom === 'existing-branch' ? s.vcs.existingBranch?.trim() : s.vcs?.startFrom === 'branch' ? s.vcs.baseBranch?.trim() || 'main' : '';
+        if (!named)
+            continue;
+        const there = (await git(repoDir, ['rev-parse', '--verify', '--quiet', `refs/heads/${named}^{commit}`])).stdout;
+        if (!there) {
+            blocking = true;
+            problem = `${problem ? `${problem} ` : ''}"${s.name}" is set to ${s.vcs?.startFrom === 'existing-branch' ? 'carry on' : 'start from'} the local branch "${named}", and there is no such branch: create it, or change "Start from" on the session's page.`;
+        }
+    }
+    const noCommits = first.vcs?.commitOnFinish === false;
+    const ready = blocking ? false : !problem ? true : noCommits && !plan?.needed ? true : !!plan?.needed && plan.ok && !plan.requireApproval;
+    const sharing = sessions.filter((s) => s.role === 'first' || s.role === 'shares');
+    const inheriting = sessions.filter((s) => s.role === 'inherits');
+    const blockedInputs = inputs.filter((e) => e.allowed.length === 0);
+    const prefix = first.vcs?.branchPrefix || 'cop/';
+    const baselineName = `${branchNameFrom(['baseline'], prefix)}/${first.id}`;
+    const actions = [];
+    if (inputs.length > 0) {
+        actions.push({ id: 'review-inputs', available: true, result: `Shows the ${inputs.length} input file(s) with their git status and size. Changes nothing.` });
+    }
+    if (baseBranch && !first.vcsBaseCommit && inputs.length > 0) {
+        const why = !baseHead
+            ? `there is no local branch "${baseBranch}"`
+            : unrelated.length > 0
+                ? `besides the input files there are other uncommitted changes (${unrelated.slice(0, 5).map((u) => u.path).join(', ')}${unrelated.length > 5 ? '…' : ''}): commit or stash them first, or use the current branch instead`
+                : blockedInputs.length > 0
+                    ? `${blockedInputs.map((b) => b.path).join(', ')} cannot be taken as input files`
+                    : problem && /match no file/.test(problem)
+                        ? problem
+                        : undefined;
+        actions.push({
+            id: 'snapshot-on-base',
+            available: !why,
+            recommended: !why && branch !== baseBranch,
+            ...(why ? { why } : {}),
+            result: `Commits the ${inputs.length} input file(s) on top of "${baseBranch}" (${short(baseHead)}) as "Capture user-provided inputs", on the new branch ${baselineName}, ` +
+                `without switching branches: your checkout${branch ? ` of "${branch}"` : ''} and the files stay exactly as they are. ` +
+                `${names(sharing)} start from it${inheriting.length > 0 ? `; ${names(inheriting)} carry it on through the chain` : ''}.`,
+        });
+    }
+    if (plan?.needed && plan.ok && plan.requireApproval) {
+        actions.push({
+            id: 'snapshot-here',
+            available: true,
+            result: plan.recapture
+                ? `Commits the ${plan.entries.length} changed input file(s) on "${first.name}"'s line of work (${plan.baselineBranch}); the next task starts from them.`
+                : `Commits the ${plan.entries.filter((e) => e.choice === 'include').length} file(s) ticked on top of "${branch ?? 'HEAD'}" (${short(head)}) as one commit on the new branch ${plan.baselineBranch}, and puts the repository on it; "${branch ?? 'HEAD'}" itself does not move.` +
+                    (plan.entries.some((e) => e.choice === 'leave-out') ? ' Files left out go into .git/info/exclude.' : ''),
+        });
+    }
+    if (baseBranch && startFrom === 'branch' && !first.vcsBaseCommit && branch && branch !== baseBranch) {
+        actions.push({
+            id: 'use-current-branch',
+            available: true,
+            result: `${names(sharing)} start from "${branch}" (${short(head)}) instead of "${baseBranch}": their "Start from" becomes "From wherever the repository is". ` +
+                'Nothing is committed yet; a snapshot on that branch is offered next if one is needed.',
+        });
+    }
+    if (!plan?.needed && unrelated.length > 0 && dirtyPolicy(first.vcs).policy === 'reject' && !first.vcsBaseCommit && !noCommits) {
+        actions.push({
+            id: 'allow-snapshot',
+            available: true,
+            result: `"Uncommitted changes" for "${first.name}" becomes "Take them as a starting snapshot": the files are listed here for you to approve. Nothing is committed yet.`,
+        });
+    }
+    return {
+        repoDir,
+        ready,
+        ...(problem && !ready ? { problem: problem.replace(/^There are uncommitted changes, and no starting snapshot can be taken: /, '') } : {}),
+        branch,
+        head,
+        ...(baseBranch ? { baseBranch, baseHead } : {}),
+        sessions,
+        inputPatterns: settings?.patterns ?? [],
+        inputs,
+        unrelated,
+        entries: plan?.entries ?? [],
+        actions,
+    };
+}
+/**
+ * Does one action for one repository of a run, after checking it is still what was shown: the group is
+ * worked out again, and an action that is no longer available, or a list of files that changed, is
+ * refused with nothing done.
+ */
+export async function runVcsPrepare(sessions, repoDir, action, choices, bus, saveSession, allSessions) {
+    const list = sessions.filter((s) => s.vcs?.enabled && norm(repoDirOf(s)) === norm(repoDir));
+    if (list.length === 0)
+        return { ok: false, problem: 'none of the run\'s sessions works in that repository.' };
+    const group = await groupFor(list, allSessions);
+    const offered = group.actions.find((a) => a.id === action);
+    if (!offered || !offered.available)
+        return { ok: false, problem: offered?.why ?? 'that is not offered for this repository now. Look again; nothing was done.' };
+    const first = list[0];
+    if (action === 'review-inputs')
+        return { ok: true, result: offered.result };
+    if (action === 'use-current-branch') {
+        const moved = group.sessions.filter((s) => (s.role === 'first' || s.role === 'shares') && !s.started);
+        for (const s of moved) {
+            await saveSession(s.id, (x) => {
+                if (x.vcs)
+                    x.vcs.startFrom = 'head';
+                x.vcsBaseCommit = undefined;
+                x.vcsStart = undefined;
+            });
+        }
+        return { ok: true, result: `${names(moved)} now start from "${group.branch}".` };
+    }
+    if (action === 'allow-snapshot') {
+        await saveSession(first.id, (x) => {
+            if (x.vcs)
+                x.vcs.dirtyWorktree = { policy: 'snapshot' };
+        });
+        return { ok: true, result: `"${first.name}" takes its uncommitted changes as a starting snapshot once you approve the list.` };
+    }
+    if (action === 'snapshot-here') {
+        const taken = await takeSnapshot(first, { approved: true, choices }, bus, async (m) => saveSession(first.id, m), allSessions);
+        return taken.ok ? { ok: true, result: `taken: ${short(taken.start.commit)} on ${taken.start.branch ?? taken.start.inputs?.recaptured?.at(-1)?.branch ?? ''}.` } : { ok: false, problem: taken.problem };
+    }
+    // snapshot-on-base: the base branch's tree plus the approved inputs only, with a temporary index.
+    const paths = group.inputs.map((e) => e.path);
+    const shown = Object.keys(choices).sort();
+    if (JSON.stringify(shown) !== JSON.stringify([...paths].sort()) || paths.some((p) => choices[p] !== 'include')) {
+        return { ok: false, problem: 'the input files changed since the list was shown. Look at the list again; nothing was done.' };
+    }
+    const topR = await git(repoDir, ['rev-parse', '--show-toplevel']);
+    if (!topR.ok || !topR.stdout || !group.baseHead || !group.baseBranch)
+        return { ok: false, problem: 'the base branch could not be read.' };
+    const top = resolve(topR.stdout);
+    const files = [];
+    for (const path of paths) {
+        const blob = await git(top, ['hash-object', '-w', `--path=${path}`, '--', join(top, path)]);
+        if (!blob.ok || !blob.stdout)
+            return { ok: false, problem: `${path} could not be read into git: ${blob.stderr}` };
+        const mode = (await git(top, ['ls-tree', group.baseHead, '--', path])).stdout.split(' ')[0] || '100644';
+        files.push({ path, mode, blob: blob.stdout });
+    }
+    const branch = await freeBranchName(top, `${branchNameFrom(['baseline'], first.vcs?.branchPrefix || 'cop/')}/${first.id}`);
+    const sharing = group.sessions.filter((s) => (s.role === 'first' || s.role === 'shares') && !s.started);
+    const message = [
+        'Capture user-provided inputs',
+        '',
+        `The operator's input files, approved on the run screen, on top of "${group.baseBranch}" (${short(group.baseHead)}).`,
+        `Made without switching branches; the sessions ${names(sharing)} start from it. The work reads them and does not change them.`,
+        '',
+        ...paths.slice(0, 200).map((p) => `- ${p}`),
+        '',
+        'Committed by copilot-operator. Not pushed.',
+        '',
+    ].join('\n');
+    const made = await commitOnto(top, group.baseHead, files, message, branch);
+    if ('problem' in made)
+        return { ok: false, problem: made.problem };
+    const settings = inputSettings(first.vcs);
+    const sums = await inputSumsAt(top, made.commit, settings?.patterns ?? []);
+    const approvedAt = new Date().toISOString();
+    for (const s of sharing) {
+        const start = {
+            kind: 'snapshot',
+            commit: made.commit,
+            branch,
+            snapshot: {
+                fromBranch: group.baseBranch,
+                fromCommit: group.baseHead,
+                included: paths.slice(0, 500),
+                leftOut: [],
+                approved: true,
+                onBase: true,
+                approvedAt,
+                sharedWith: sharing.map((x) => ({ id: x.id, name: x.name })),
+            },
+            inputs: { patterns: settings?.patterns ?? [], files: sums, readOnly: settings?.readOnly ?? true },
+        };
+        await saveSession(s.id, (x) => {
+            x.vcsBaseCommit = made.commit;
+            x.vcsStart = start;
+        });
+        bus.publish({
+            sessionId: s.id,
+            type: 'vcs-snapshot',
+            level: 'info',
+            message: `starting snapshot approved on the run screen: ${paths.length} input file(s) on top of ${group.baseBranch} (${short(group.baseHead)}) as ${short(made.commit)} on ${branch}; the checkout was not touched`,
+            data: { commit: made.commit, branch, base: group.baseHead, baseBranch: group.baseBranch, inputs: paths, approvedAt, sessions: sharing.map((x) => x.id) },
+        });
+    }
+    return { ok: true, result: `taken: ${short(made.commit)} on ${branch}, on top of "${group.baseBranch}"; ${names(sharing)} start from it.` };
+}

package/dist/src/vcs/taskVcs.js

@@ -1,6 +1,6 @@
 import { findSuspicious } from './commitHygiene.js';
 import { dirtyPolicy, planSnapshot, someOf, takeSnapshot } from './snapshot.js';
-import { inputSettings, inputsNote, settleInputs } from './inputs.js';
+import { dirtyBesidesInputs, inputSettings, inputsNote, settleInputs } from './inputs.js';
 import { artifactPatterns, excludeArtifacts } from './artifacts.js';
 import { workingTreePaths } from './git.js';
 import { inScope } from './scope.js';
@@ -133,6 +133,19 @@ async function prepare(session, task, bus, saveSession, allSessions) {
             state = await repoState(dir);
         }
     }
+    /*
+     * Input files taken into a starting snapshot on the base branch stay untracked where they are, as
+     * they were approved: not "a dirty tree" while their content is the recorded one. They are staged
+     * when the task's branch is checked out, so the switch keeps them (see `switchTo`).
+     */
+    let carryInputs = [];
+    if (state.dirty && start?.inputs) {
+        const split = await dirtyBesidesInputs(dir, start);
+        if (split.other.length === 0 && split.inputs.length > 0) {
+            carryInputs = split.inputs;
+            state = { ...state, dirty: false };
+        }
+    }
     // A dirty tree is the operator's own work in progress. Committing it under the bot's name
     // or moving it to another branch would both be decisions that are not ours to make — unless
     // the operator made it, with a snapshot policy, above.
@@ -146,6 +159,7 @@ async function prepare(session, task, bus, saveSession, allSessions) {
             message: `version control cannot start: ${problem}` });
         return { vcs: { problem }, note: '' };
     }
+    let startIsNew = false;
     if (!base) {
         const resolved = await sessionStart(session, dir, state.head, allSessions);
         if ('problem' in resolved) {
@@ -155,15 +169,13 @@ async function prepare(session, task, bus, saveSession, allSessions) {
         }
         start = resolved.start;
         base = start?.commit;
-        if (start) {
-            const chosen = start;
-            await saveSession((s) => {
-                s.vcsBaseCommit = chosen.commit;
-                s.vcsStart = chosen;
-            });
-            bus.publish({ sessionId: session.id, taskId: task.id, type: 'vcs-start', level: chosen.note || updateWarns(chosen) ? 'warn' : 'info',
-                message: describeStart(chosen), data: { ...chosen } });
-        }
+        /*
+         * Recorded below, once the inputs are settled too, not here. Recorded here, a task refused for its
+         * inputs (a pattern matching nothing yet) left the session started: the retry, with the files added,
+         * skipped the starting snapshot and ran with version control off (reported on 0.1.18). A start that
+         * is refused records nothing, and the retry starts afresh.
+         */
+        startIsNew = !!start;
     }
     /*
      * The operator's input files, in the commit the session starts from whatever its `startFrom`, with
@@ -173,20 +185,25 @@ async function prepare(session, task, bus, saveSession, allSessions) {
         const settled = await settleInputs(session, dir, start, allSessions);
         if ('problem' in settled)
             return refuse(`${settled.problem} Nothing was run.`);
-        const chosen = settled.start;
-        start = chosen;
-        base = chosen.commit;
+        start = settled.start;
+        base = settled.start.commit;
+        bus.publish({ sessionId: session.id, taskId: task.id, type: 'vcs-inputs', level: 'info',
+            message: describeInputs(settled.start), data: { files: settled.start.inputs?.files.length ?? 0, carried: settled.start.inputs?.carried } });
+        startIsNew = true;
+    }
+    if (startIsNew && start) {
+        const chosen = start;
         await saveSession((s) => {
             s.vcsBaseCommit = chosen.commit;
             s.vcsStart = chosen;
         });
-        bus.publish({ sessionId: session.id, taskId: task.id, type: 'vcs-inputs', level: 'info',
-            message: describeInputs(chosen), data: { files: chosen.inputs?.files.length ?? 0, carried: chosen.inputs?.carried } });
+        bus.publish({ sessionId: session.id, taskId: task.id, type: 'vcs-start', level: chosen.note || updateWarns(chosen) ? 'warn' : 'info',
+            message: describeStart(chosen), data: { ...chosen } });
     }
     const attempt = task.attempt ?? 1;
     const prefix = settings.branchPrefix || 'cop/';
     if (settings.branchMode === 'per-session') {
-        return await switchTo(session, task, dir, sessionBranchName(session), base, bus, { reuseExisting: true, start });
+        return await switchTo(session, task, dir, sessionBranchName(session), base, bus, { reuseExisting: true, start, stage: carryInputs });
     }
     // A name the task carries wins over one derived from its title: whoever wrote the plan knew
     // what the task was for, and a title is only ever a label for the list.
@@ -199,11 +216,11 @@ async function prepare(session, task, bus, saveSession, allSessions) {
     // The same for a new prompt given to a finished task: it builds on that attempt's work.
     const previousBranch = task.continuing || task.buildsOn ? task.attempts?.at(-1)?.vcs?.branch : undefined;
     if (previousBranch)
-        return await switchTo(session, task, dir, previousBranch, base, bus, { reuseExisting: true, start });
+        return await switchTo(session, task, dir, previousBranch, base, bus, { reuseExisting: true, start, stage: carryInputs });
     // A re-run starts from where that task started the first time, not from where the previous
     // attempt ended. That is the whole point of recording the base commit.
     const from = firstAttemptBase(task) ?? base;
-    return await switchTo(session, task, dir, wanted, from, bus, { reuseExisting: false, start });
+    return await switchTo(session, task, dir, wanted, from, bus, { reuseExisting: false, start, stage: carryInputs });
 }
 /**
  * The one branch a `per-session` session works on: the name it was given, else one made from its
@@ -360,6 +377,7 @@ export async function sessionStart(session, dir, head, allSessions) {
                 commit: startedAt,
                 ...(before.vcsStart?.branch ? { branch: before.vcsStart.branch } : {}),
                 fromSession: { id: before.id, name: before.name },
+                ...inheritedBaseline(before),
                 note: artifactsOnly
                     ? `"${before.name}" committed nothing — its result is artifacts only — so this session starts where it started (${startedAt.slice(0, 8)})`
                     : `"${before.name}" changed nothing, so this session starts where it started (${startedAt.slice(0, 8)})`,
@@ -399,7 +417,7 @@ export async function sessionStart(session, dir, head, allSessions) {
                 'or run that session "One branch for the whole session" so the next one can carry on from it.',
         };
     }
-    return { start: { kind: 'previous-session', commit: tip, branch: best.branch, fromSession: { id: best.session.id, name: best.session.name } } };
+    return { start: { kind: 'previous-session', commit: tip, branch: best.branch, fromSession: { id: best.session.id, name: best.session.name }, ...inheritedBaseline(best.session) } };
 }
 /**
  * The branch holding a session's latest work, and when that work ended: in `per-session` mode its
@@ -418,6 +436,15 @@ function lastWorkOf(session) {
     }
     return best;
 }
+/**
+ * The starting snapshot a session carries on, for the one that continues it: its own when it made
+ * one, else the one it inherited. Recorded so the export can say each session of a chain shares it.
+ */
+function inheritedBaseline(before) {
+    const own = before.vcsStart?.kind === 'snapshot' ? { commit: before.vcsStart.commit, branch: before.vcsStart.branch, fromSession: { id: before.id, name: before.name } } : undefined;
+    const baseline = own ?? before.vcsStart?.baseline;
+    return baseline ? { baseline } : {};
+}
 /** When a session last did anything: the latest start or end of any of its tasks' attempts. */
 function lastActivityOf(session) {
     let at = null;
@@ -495,6 +522,10 @@ opts) {
         bus.publish({ sessionId: session.id, taskId: task.id, type: 'vcs-problem', level: 'warn', message: problem });
         return { vcs: { problem }, note: '' };
     }
+    // Approved inputs left untracked where they are: staged first, so the switch keeps them.
+    const stage = opts.stage ?? [];
+    if (stage.length > 0)
+        await git(dir, ['--literal-pathspecs', 'add', '-f', '--', ...stage]);
     const state = await repoState(dir);
     let name = wantedName;
     let result;
@@ -510,6 +541,9 @@ opts) {
         result = await createBranch(dir, name, from);
     }
     if (!result.ok) {
+        // The operator's checkout as it was: the staged inputs go back to untracked.
+        if (stage.length > 0)
+            await git(dir, ['--literal-pathspecs', 'restore', '--staged', '--', ...stage]);
         const problem = result.stderr || result.stdout || 'the branch could not be created';
         bus.publish({ sessionId: session.id, taskId: task.id, type: 'vcs-problem', level: 'warn',
             message: `version control is on but inactive: ${problem}` });
@@ -923,7 +957,13 @@ export async function vcsPreflight(session, allSessions = async () => []) {
         return { ok: false, repoDir, problem: state.problem };
     // Artifacts do not count: the run keeps them out of git before it looks (see `excludeArtifacts`).
     const artifacts = artifactPatterns(settings);
-    const changed = state.dirty && artifacts.length > 0 ? (await workingTreePaths(repoDir)).filter((p) => !inScope(p, artifacts)) : state.changed;
+    // File by file when anything is to be told apart: plain status folds a new folder into one line.
+    let changed = state.dirty && (artifacts.length > 0 || !!session.vcsStart?.inputs) ? (await workingTreePaths(repoDir)).filter((p) => !artifacts.length || !inScope(p, artifacts)) : state.changed;
+    // Approved inputs left untracked as they were (a snapshot on the base branch) are not dirt either.
+    if (changed.length > 0 && session.vcsStart?.inputs) {
+        const split = await dirtyBesidesInputs(repoDir, session.vcsStart);
+        changed = changed.filter((p) => !split.inputs.includes(p));
+    }
     const dirty = changed.length > 0;
     /*
      * Before the first task, under a snapshot policy or with input files: the list to approve, file by

package/dist/web/404.html

@@ -1,4 +1,4 @@
-<!DOCTYPE html><!--ofnRLEgWx9th5w_qtuFnB--><html lang="en" data-theme="light" data-textsize="normal" data-contrast="normal" data-motion="normal" data-links="plain" data-focus="normal"><head><meta charSet="utf-8"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="/_next/static/css/c37978b44194c37b.css" data-precedence="next"/><link rel="preload" as="script" fetchPriority="low" href="/_next/static/chunks/webpack-0f31b926d9a9c5a4.js"/><script src="/_next/static/chunks/c7879cf7-b5ab1053c1d9a2e7.js" async=""></script><script src="/_next/static/chunks/131-bae98f790a541679.js" async=""></script><script src="/_next/static/chunks/main-app-e3a5f713ba31557e.js" async=""></script><script src="/_next/static/chunks/197-f7c33a0114fc3db3.js" async=""></script><script src="/_next/static/chunks/867-d9c54f7a2b285b3f.js" async=""></script><script src="/_next/static/chunks/549-5d7c845fb0a27dbe.js" async=""></script><script src="/_next/static/chunks/app/layout-3efbb282292ccc38.js" async=""></script><meta name="robots" content="noindex"/><title>404: This page could not be found.</title><title>copilot-operator</title><meta name="description" content="Runs task loops with Microsoft 365 Copilot on this machine."/><script>
+<!DOCTYPE html><!--9Ze8aagkvT_WLfD4KCKKS--><html lang="en" data-theme="light" data-textsize="normal" data-contrast="normal" data-motion="normal" data-links="plain" data-focus="normal"><head><meta charSet="utf-8"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="/_next/static/css/c37978b44194c37b.css" data-precedence="next"/><link rel="preload" as="script" fetchPriority="low" href="/_next/static/chunks/webpack-0f31b926d9a9c5a4.js"/><script src="/_next/static/chunks/c7879cf7-b5ab1053c1d9a2e7.js" async=""></script><script src="/_next/static/chunks/131-bae98f790a541679.js" async=""></script><script src="/_next/static/chunks/main-app-e3a5f713ba31557e.js" async=""></script><script src="/_next/static/chunks/197-f7c33a0114fc3db3.js" async=""></script><script src="/_next/static/chunks/867-79f07bebe3084811.js" async=""></script><script src="/_next/static/chunks/549-5f90780046c1c24f.js" async=""></script><script src="/_next/static/chunks/app/layout-3efbb282292ccc38.js" async=""></script><meta name="robots" content="noindex"/><title>404: This page could not be found.</title><title>copilot-operator</title><meta name="description" content="Runs task loops with Microsoft 365 Copilot on this machine."/><script>
 (function () {
   try {
     var d = document.documentElement;
@@ -13,4 +13,4 @@
     d.dataset.focus = a.strongFocus ? 'strong' : 'normal';
   } catch (e) {}
 })();
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