contradiction-mcp 0.1.1 → 0.2.1

package/README.md

@@ -16,6 +16,7 @@
 <p align="center">
   <a href="#the-problem-it-solves">Problem</a> •
   <a href="#core-capabilities">Capabilities</a> •
+  <a href="#limitations--known-edge-cases">Limitations</a> •
   <a href="#system-architecture">Architecture</a> •
   <a href="#one-command-quickstart-all-ides">Quickstart</a> •
   <a href="#mcp-interface-21-tools-4-resources-2-prompts">Tools Reference</a> •
@@ -28,6 +29,14 @@
 
 ---
 
+> [!NOTE]
+>
+> ### Project Status: Active Development (v0.2.1)
+>
+> **Contradiction MCP is currently under active development.** Core multi-format document ingestion (Markdown, RFC822 `.eml`, OpenXML `.docx`, and JSON) and cross-document contradiction discovery are operational and verified. Heuristic classifiers, deep JSON scoping, and public APIs are actively evolving prior to v1.0.0.
+
+---
+
 ## The Problem It Solves
 
 Modern engineering ecosystems rely on fragmented, uncoordinated sources of truth:
@@ -53,18 +62,42 @@ When these systems diverge—for example, a Kubernetes manifest deploying Node.j
 - **Deterministic SemVer Mathematics**: Employs rigorous version range satisfaction algebra rather than naive string comparisons.
 - **Multi-Source Ingestion Pipeline**:
   - **GitHub Connector**: Analyzes runtime engines, Dockerfiles, GitHub Actions workflows, and READMEs.
-  - **Document Connector**: Extracts structured claims from JSON, YAML, Markdown, CSV, TXT, and PDF documents with exact page- and line-numbered evidence citations.
+  - **Document Connector**: Extracts structured claims from JSON, YAML, Markdown, CSV, TXT, RFC822 (`.eml`), and OpenXML (`.docx`) documents with exact page- and line-numbered evidence citations.
   - **Public Website Connector**: Web crawler hardened with multi-layer SSRF protection against loopback, private IPv4/IPv6 CIDRs, and cloud metadata endpoints (`169.254.169.254`).
 - **Scoring & Advisory Intelligence**:
   - `AuthorityScorer`: Ranks conflicting claims based on source hierarchy and origin credibility.
   - `FreshnessScorer`: Applies exponential half-life time decay models.
-  - `EvidenceEvaluator`: Quantifies citation directness and snippet quality.
+  * `EvidenceEvaluator`: Quantifies citation directness and snippet quality.
   - `ResolutionAdvisor`: Generates actionable resolution recommendations without mutating state without operator consent.
 - **Review & Resolution Workflows**: Full lifecycle transitions (`OPEN` → `REVIEWED` → `RESOLVED` / `DISMISSED` → `REOPENED`) backed by append-only audit histories.
 - **Dual Transport Architecture**: Operates over standard **Stdio** (for Claude Desktop, Google Antigravity, Cursor) or **Streamable HTTP/SSE** with Bearer API key authentication and sliding rate limiting.
 
 ---
 
+## Limitations & Known Edge Cases
+
+While Contradiction MCP is battle-tested on cross-document and cross-source consistency audits, users should be aware of current development limitations:
+
+1. **Intra-Manifest Hierarchical Collisions (Deeply Nested JSON/YAML)**:
+   - **Behavior**: Key-value extraction flattens object hierarchies into leaf tokens. In complex single manifests (such as Kubernetes deployments), parameters sharing identical leaf keys across distinct blocks (e.g., `readinessProbe.initialDelaySeconds` vs `livenessProbe.initialDelaySeconds`, or container `resources.requests.cpu` vs `resources.limits.cpu`) can trigger intra-file candidate comparisons and false-positive warnings.
+   - **Mitigation**: Focus analysis on cross-document source verification or filter by external source boundaries. Hierarchical path-aware namespace isolation is currently under active development.
+
+2. **Heading & Brand Entity Extraction**:
+   - **Behavior**: Document headings containing version-like keywords (e.g., `"2. Node.js V8 Engine Upgrade"`) may occasionally extract the engine brand or section numeral as a software version string, triggering local version mismatch warnings against runtime version specifications.
+   - **Mitigation**: Structure specifications using standard tables, key-value mappings, or explicit parameter declarations.
+
+3. **Static Specifications vs Live Network State**:
+   - **Behavior**: The engine analyzes declared assertions across files, repositories, and documentation. It does not probe live runtime sockets, ephemeral cloud infrastructure, or running processes unless synced as structured state documents.
+
+4. **Candidate Pair Scalability on Giant Monoliths**:
+   - **Behavior**: Files producing >1,000 claims increase pairwise combinations quadratically ($O(N^2)$ worst-case prior to similarity filtering).
+   - **Mitigation**: Bounded file size guards (`MAX_FILE_SIZE_BYTES`, default 10MB) prevent memory exhaust. Partition giant monoliths into modular architecture specs.
+
+5. **Language & Syntax Scope**:
+   - **Behavior**: Extraction heuristics, unit normalizers (e.g., `GB`, `MB`, `ms`), and predicate patterns are currently tuned for English documentation and standard DevOps/software configuration keys. Multi-lingual natural language extraction without standard keying is planned for future releases.
+
+---
+
 ## System Architecture
 
 ### Visual Dataflow
@@ -252,33 +285,34 @@ Connect distributed agents or team members to a centralized server daemon:
 
 ---
 
-## MCP Interface: 21 Tools, 4 Resources, 2 Prompts
-
-### Active MCP Tools (21)
-
-| Tool Name                       | Description                                                       | Key Arguments                              |
-| :------------------------------ | :---------------------------------------------------------------- | :----------------------------------------- |
-| `health_check`                  | Checks server runtime health, database latency, and entity counts | `{}`                                       |
-| `analyze_claim_pair`            | Runs pairwise contradiction analysis between two claim IDs        | `claimIdA`, `claimIdB`                     |
-| `scan_for_contradictions`       | Scans the full knowledge base for conflicting assertions          | `limit`, `minSeverity`                     |
-| `scan_claim_for_contradictions` | Incrementally scans candidate pairs for a specific claim          | `claimId`                                  |
-| `list_contradictions`           | Lists contradictions filtered by status and severity              | `status`, `severity`, `limit`              |
-| `get_contradiction`             | Retrieves detailed contradiction record with claims and sources   | `contradictionId`                          |
-| `explain_claim_relationship`    | Explains contextual factors (env, scope, role, SemVer)            | `claimIdA`, `claimIdB`                     |
-| `advise_resolution`             | Heuristically compares authority, freshness, and evidence         | `contradictionId`                          |
-| `review_contradiction`          | Transitions contradiction to `REVIEWED` status                    | `contradictionId`, `reviewedBy`, `notes`   |
-| `resolve_contradiction`         | Resolves contradiction by selecting canonical claim               | `contradictionId`, `resolvedBy`, `reason`  |
-| `dismiss_contradiction`         | Dismisses false positives or intentional differences              | `contradictionId`, `dismissedBy`, `reason` |
-| `reopen_contradiction`          | Reopens a previously resolved or dismissed contradiction          | `contradictionId`, `reopenedBy`, `reason`  |
-| `get_contradiction_history`     | Returns chronological, immutable audit trail of transitions       | `contradictionId`                          |
-| `get_claim_history`             | Returns value history and supersessions for a specific claim      | `externalId`                               |
-| `list_connectors`               | Lists registered ingestion connectors and capabilities            | `{}`                                       |
-| `test_github_connection`        | Tests GitHub connectivity and rate-limit headroom                 | `owner`, `repo`                            |
-| `sync_github_repository`        | Ingests package.json, Dockerfile, README, and workflows           | `owner`, `repo`, `branch`                  |
-| `sync_document`                 | Ingests local JSON, YAML, MD, CSV, TXT, or PDF files              | `filePath`, `subject`, `sourceRole`        |
-| `sync_website`                  | Ingests web URL with pre-flight SSRF protection                   | `url`, `subject`, `maxDepth`               |
-| `sync_source`                   | Synchronizes an existing registered source by ID                  | `sourceId`                                 |
-| `sync_sources`                  | Bounded-concurrency batch synchronization                         | `sourceIds`                                |
+## MCP Interface: 22 Tools, 4 Resources, 2 Prompts
+
+### Active MCP Tools (22)
+
+| Tool Name                        | Description                                                       | Key Arguments                                |
+| :------------------------------- | :---------------------------------------------------------------- | :------------------------------------------- |
+| `health_check`                   | Checks server runtime health, database latency, and entity counts | `{}`                                         |
+| `analyze_claim_pair`             | Runs pairwise contradiction analysis between two claim IDs        | `claimIdA`, `claimIdB`                       |
+| `scan_for_contradictions`        | Scans the full knowledge base for conflicting assertions          | `limit`, `minConfidence`, `includeDismissed` |
+| `scan_source_for_contradictions` | Scans assertions originating from a specific source ID            | `sourceId`, `limit`, `minConfidence`         |
+| `scan_claim_for_contradictions`  | Incrementally scans candidate pairs for a specific claim          | `claimId`                                    |
+| `list_contradictions`            | Lists contradictions filtered by status and severity              | `status`, `severity`, `limit`                |
+| `get_contradiction`              | Retrieves detailed contradiction record with claims and sources   | `contradictionId`                            |
+| `explain_claim_relationship`     | Explains contextual factors (env, scope, role, SemVer)            | `claimIdA`, `claimIdB`                       |
+| `advise_resolution`              | Heuristically compares authority, freshness, and evidence         | `contradictionId`                            |
+| `review_contradiction`           | Transitions contradiction to `REVIEWED` status                    | `contradictionId`, `reviewedBy`, `notes`     |
+| `resolve_contradiction`          | Resolves contradiction by selecting canonical claim               | `contradictionId`, `resolvedBy`, `reason`    |
+| `dismiss_contradiction`          | Dismisses false positives or intentional differences              | `contradictionId`, `dismissedBy`, `reason`   |
+| `reopen_contradiction`           | Reopens a previously resolved or dismissed contradiction          | `contradictionId`, `reopenedBy`, `reason`    |
+| `get_contradiction_history`      | Returns chronological, immutable audit trail of transitions       | `contradictionId`                            |
+| `get_claim_history`              | Returns value history and supersessions for a specific claim      | `externalId`                                 |
+| `list_connectors`                | Lists registered ingestion connectors and capabilities            | `{}`                                         |
+| `test_github_connection`         | Tests GitHub connectivity and rate-limit headroom                 | `owner`, `repo`                              |
+| `sync_github_repository`         | Ingests package.json, Dockerfile, README, and workflows           | `owner`, `repo`, `branch`                    |
+| `sync_document`                  | Ingests local JSON, YAML, MD, CSV, TXT, or PDF files              | `filePath`, `subject`, `sourceRole`          |
+| `sync_website`                   | Ingests web URL with pre-flight SSRF protection                   | `url`, `subject`, `maxDepth`                 |
+| `sync_source`                    | Synchronizes an existing registered source by ID                  | `sourceId`                                   |
+| `sync_sources`                   | Bounded-concurrency batch synchronization                         | `sourceIds`                                  |
 
 ### Active MCP Resources (4)
 
@@ -512,6 +546,23 @@ docker compose logs -f
 
 ---
 
+## Release History
+
+### v0.2.1 (2026-09-14)
+
+- **22 Active MCP Tools**: Full interface alignment including `scan_source_for_contradictions` for targeted source discovery.
+- **Section Heading Namespacing in Markdown**: Hierarchical markdown headings (`##` to `######`) namespace nested properties (e.g. `### API Gateway` $\rightarrow$ `api_gateway_port`), preventing intra-document collisions while matching nested JSON configurations.
+- **Precision Predicate Similarity Guard**: Enhanced `claimMatcher` requiring $\ge 50\%$ token overlap on multi-token phrases, eliminating false matches between distinct properties sharing generic suffixes (`node_version` vs `cache_version`, `runtime_node_version` vs `runtime_python_version`).
+- **Scoped JSON Extraction**: Streamlined `flattenJsonObject` to emit unique composite paths, avoiding leaf key duplication explosions.
+- **Numeric Claim Validation**: Excluded valid single-digit numbers (`4`, `3`) from short-value extraction warnings.
+- **Multi-Format Ingestion**: End-to-end verified across Markdown, JSON, OpenXML `.docx`, and Kubernetes manifests.
+
+### v0.2.0 (2026-09-13)
+
+- Initial public release with 21 core MCP tools, SQLite WAL persistence, GitHub, Document, and Website ingestion connectors.
+
+---
+
 ## Documentation Index
 
 - [Architecture Guide](docs/architecture.md) — Layered design, protocol topology, and component contracts.

package/dist/analysis/claimMatcher.d.ts

@@ -34,11 +34,17 @@ export declare function calculateLevenshteinSimilarity(s1: string, s2: string):
  * Combined similarity score leveraging token overlap and string distance.
  */
 export declare function calculateCompositeSimilarity(strA: string, strB: string): number;
+export declare function stripWrapperPrefix(pred: string): string;
 export declare function arePredicateSynonyms(predA: string, predB: string): boolean;
+export declare function getCanonicalPredicate(predicate: string): string;
+export declare const SYSTEM_LEVEL_PREDICATES: Set<string>;
+export declare function isSystemLevelPredicate(pred: string): boolean;
+export declare function isGenericOrDocumentSubject(subject: string): boolean;
 export declare class ClaimMatcher {
     private readonly subjectThreshold;
     private readonly predicateThreshold;
     private readonly semanticMatcher;
+    private readonly entityResolver;
     constructor(options?: ClaimMatcherOptions);
     match(claimA: {
         subject: string;

package/dist/analysis/claimMatcher.js

@@ -1,4 +1,5 @@
 import { SemanticMatcher } from '../intelligence/semanticMatcher.js';
+import { EntityResolver } from '../intelligence/entityResolver.js';
 /**
  * Normalizes text for deterministic entity/property matching:
  * - Lowercase & trim
@@ -84,7 +85,14 @@ export function calculateCompositeSimilarity(strA, strB) {
         const inclusionScore = minLen / maxLen;
         return Math.max(tokenSim, editSim, inclusionScore * 0.9);
     }
-    return Math.max(tokenSim, editSim);
+    // For multi-token phrases, edit distance can be misleading if tokens differ:
+    // e.g. 'node version' vs 'cache version' has editSim 0.69 even though 'node' != 'cache'.
+    // Only use editSim if token overlap is already substantial (>= 0.5).
+    if (tokenSim >= 0.5) {
+        const editSim = calculateLevenshteinSimilarity(normA, normB);
+        return Math.max(tokenSim, editSim);
+    }
+    return tokenSim;
 }
 const PREDICATE_SYNONYM_GROUPS = [
     new Set(['port', 'listen_port', 'server_port', 'http_port', 'service_port']),
@@ -96,45 +104,165 @@ const PREDICATE_SYNONYM_GROUPS = [
         'token_expiration',
         'session_timeout',
         'timeout',
+        'timeout_ms',
     ]),
-    new Set(['db_engine', 'database_type', 'database_engine', 'db_type', 'database']),
-    new Set(['node_version', 'node', 'nodejs_version', 'node_ver']),
-    new Set(['python_version', 'python', 'python_ver']),
-    new Set(['memory', 'ram', 'min_ram', 'minimum_ram', 'memory_limit']),
+    new Set(['db_engine', 'database_type', 'database_engine', 'db_type', 'database', 'db_backend']),
+    new Set(['db_version', 'database_version', 'database_db_version', 'db_ver']),
+    new Set(['node_version', 'node', 'nodejs_version', 'node_ver', 'runtime_node_version']),
+    new Set(['python_version', 'python', 'python_ver', 'runtime_python_version']),
+    new Set(['memory', 'ram', 'min_ram', 'minimum_ram', 'min_memory', 'memory_limit']),
     new Set(['cpu', 'cores', 'min_cpu', 'cpu_cores']),
 ];
+export function stripWrapperPrefix(pred) {
+    const norm = pred.toLowerCase().replace(/[^a-z0-9_]/g, '_');
+    return norm.replace(/^(runtime|spec|config|configuration|settings|env|metadata|properties|parameters)_+/, '');
+}
 export function arePredicateSynonyms(predA, predB) {
     const a = predA.toLowerCase().replace(/[^a-z0-9_]/g, '_');
     const b = predB.toLowerCase().replace(/[^a-z0-9_]/g, '_');
     if (a === b)
         return true;
+    const strippedA = stripWrapperPrefix(a);
+    const strippedB = stripWrapperPrefix(b);
+    if (strippedA === strippedB && strippedA.length > 0)
+        return true;
     for (const group of PREDICATE_SYNONYM_GROUPS) {
-        if (group.has(a) && group.has(b))
+        const hasA = group.has(a) || group.has(strippedA);
+        const hasB = group.has(b) || group.has(strippedB);
+        if (hasA && hasB)
             return true;
     }
     return false;
 }
+export function getCanonicalPredicate(predicate) {
+    const norm = predicate.toLowerCase().replace(/[^a-z0-9_]/g, '_');
+    for (const group of PREDICATE_SYNONYM_GROUPS) {
+        if (group.has(norm)) {
+            return Array.from(group).sort()[0];
+        }
+    }
+    return norm;
+}
+export const SYSTEM_LEVEL_PREDICATES = new Set([
+    'port',
+    'listen_port',
+    'server_port',
+    'http_port',
+    'service_port',
+    'node_version',
+    'node',
+    'nodejs_version',
+    'node_ver',
+    'python_version',
+    'python',
+    'python_ver',
+    'memory',
+    'ram',
+    'min_ram',
+    'minimum_ram',
+    'min_memory',
+    'memory_limit',
+    'cpu',
+    'cores',
+    'min_cpu',
+    'cpu_cores',
+    'db_engine',
+    'database_type',
+    'database_engine',
+    'db_type',
+    'database',
+    'db_backend',
+    'jwt_ttl',
+    'token_expiry',
+    'session_timeout',
+    'timeout',
+    'timeout_ms',
+    'max_connections',
+    'max_users',
+    'concurrent_users',
+    'tls_enabled',
+    'ssl_enabled',
+    'cluster_region',
+    'environment',
+    'version',
+    'license',
+]);
+export function isSystemLevelPredicate(pred) {
+    const norm = pred.toLowerCase().replace(/[^a-z0-9_]/g, '_');
+    return SYSTEM_LEVEL_PREDICATES.has(norm);
+}
+export function isGenericOrDocumentSubject(subject) {
+    if (!subject)
+        return true;
+    const s = subject.toLowerCase().trim();
+    const genericWords = new Set([
+        'default',
+        'system',
+        'app',
+        'application',
+        'service',
+        'workspace',
+        'spec',
+        'unknown',
+        'website',
+        'global',
+        'infrastructure',
+    ]);
+    if (genericWords.has(s))
+        return true;
+    if (/\.(md|txt|json|yaml|yml|docx|csv|pdf|ts|js|html|eml)$/i.test(s))
+        return true;
+    if (/^(file|doc|email|cto)[a-z0-9_]*$/i.test(s))
+        return true;
+    if (/^[a-z0-9_-]+[_.](spec|specification|manifest|architecture|blueprint|directive|guide|config|configuration|readme|deployment)$/i.test(s)) {
+        return true;
+    }
+    if (/^(spec|specification|manifest|architecture|blueprint|directive|guide|config|configuration|readme|deployment)$/i.test(s)) {
+        return true;
+    }
+    return false;
+}
 export class ClaimMatcher {
     subjectThreshold;
     predicateThreshold;
     semanticMatcher;
+    entityResolver;
     constructor(options) {
         this.subjectThreshold = options?.subjectThreshold ?? 0.75;
         this.predicateThreshold = options?.predicateThreshold ?? 0.65;
         this.semanticMatcher = new SemanticMatcher({
-            enabled: options?.enableSemanticMatching ?? true,
             threshold: this.predicateThreshold,
         });
+        this.entityResolver = new EntityResolver();
     }
     match(claimA, claimB) {
         const normSubA = normalizeText(claimA.subject);
         const normSubB = normalizeText(claimB.subject);
         const normPredA = normalizeText(claimA.predicate);
         const normPredB = normalizeText(claimB.predicate);
-        const subjectSimilarity = calculateCompositeSimilarity(claimA.subject, claimB.subject);
+        const entityMatch = this.entityResolver.resolveEntityMatch(claimA.subject, claimB.subject);
+        let subjectSimilarity = calculateCompositeSimilarity(claimA.subject, claimB.subject);
+        if (entityMatch.isMatch) {
+            subjectSimilarity = Math.max(subjectSimilarity, entityMatch.confidence);
+        }
+        const tokensA = normPredA.split(' ').filter(Boolean);
+        const tokensB = normPredB.split(' ').filter(Boolean);
+        const leafA = tokensA[tokensA.length - 1] || normPredA;
+        const leafB = tokensB[tokensB.length - 1] || normPredB;
+        const isSynonym = arePredicateSynonyms(claimA.predicate, claimB.predicate);
         let predicateSimilarity = calculateCompositeSimilarity(claimA.predicate, claimB.predicate);
+        // Guard against cross-subsystem false matches where two predicates share only
+        // a generic leaf (e.g. 'port', 'version') but have different subsystem prefixes
+        // (e.g. 'api_gateway_port' vs 'cache_port', 'node_version' vs 'cache_version').
+        if (!isSynonym) {
+            const prefixA = tokensA.slice(0, -1).join(' ');
+            const prefixB = tokensB.slice(0, -1).join(' ');
+            if (prefixA && prefixB && prefixA !== prefixB && leafA === leafB) {
+                predicateSimilarity = 0;
+            }
+        }
         let matchDetail = '';
-        if (arePredicateSynonyms(claimA.predicate, claimB.predicate)) {
+        if (isSynonym) {
             predicateSimilarity = Math.max(predicateSimilarity, 0.95);
             matchDetail = ' (matched via predicate synonym dictionary)';
         }
@@ -145,7 +273,18 @@ export class ClaimMatcher {
                 matchDetail = ` (matched via semantic matcher, score: ${semRes.confidence.toFixed(2)})`;
             }
         }
-        const subjectMatches = subjectSimilarity >= this.subjectThreshold;
+        const isSysPred = isSystemLevelPredicate(claimA.predicate) ||
+            isSystemLevelPredicate(claimB.predicate) ||
+            isSystemLevelPredicate(leafA) ||
+            isSystemLevelPredicate(leafB);
+        const isGenericSubjectA = isGenericOrDocumentSubject(claimA.subject);
+        const isGenericSubjectB = isGenericOrDocumentSubject(claimB.subject);
+        let subjectMatches = subjectSimilarity >= this.subjectThreshold;
+        if (!subjectMatches && isSysPred && (isGenericSubjectA || isGenericSubjectB)) {
+            subjectMatches = true;
+            subjectSimilarity = Math.max(subjectSimilarity, 0.85);
+            matchDetail += ' (cross-document system specification)';
+        }
         const predicateMatches = predicateSimilarity >= this.predicateThreshold;
         const matches = subjectMatches && predicateMatches;
         let reason;

package/dist/analysis/claimMatcher.js.map

@@ -1 +1 @@
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package/dist/analysis/contextAnalyzer.js

@@ -80,13 +80,11 @@ export class ContextAnalyzer {
         const isExample = claimA.sourceRole === 'example' ||
             claimB.sourceRole === 'example' ||
             (claimA.metadata &&
-                String(claimA.metadata.evidence || '')
-                    .toLowerCase()
-                    .includes('example')) ||
+                (claimA.metadata.isExample === true ||
+                    /\b(?:for\s+example|as\s+an\s+example|e\.g\.|sample|tutorial|quickstart)\b|^\s*[-*#]*\s*example\b/i.test(String(claimA.metadata.evidence || '')))) ||
             (claimB.metadata &&
-                String(claimB.metadata.evidence || '')
-                    .toLowerCase()
-                    .includes('example'));
+                (claimB.metadata.isExample === true ||
+                    /\b(?:for\s+example|as\s+an\s+example|e\.g\.|sample|tutorial|quickstart)\b|^\s*[-*#]*\s*example\b/i.test(String(claimB.metadata.evidence || ''))));
         if (isExample) {
             divergences.push('sourceRole');
             return {
@@ -124,7 +122,7 @@ export class ContextAnalyzer {
                 relationship: {
                     type: 'DIFFERENT_ENVIRONMENT',
                     confidence: 0.9,
-                    explanation: `Claims apply to distinct non-overlapping environments (${envA} vs ${envB}). Distinct environments legitimately maintain different parameter values.`,
+                    explanation: `Claims apply to distinct non-overlapping environments ('${envA}' vs '${envB}'). Distinct environments legitimately maintain different parameter values.`,
                     isContradictionEligible: false,
                     contextFactors: {
                         environmentMatch: false,
@@ -136,19 +134,19 @@ export class ContextAnalyzer {
                 },
                 isContextCompatible: false,
                 compatibilityScore: 0.2,
-                reason: `Environments '${envA}' and '${envB}' are distinct operational tiers.`,
+                reason: `Environment '${envA}' is explicitly separate from '${envB}'.`,
                 divergenceDimensions: divergences,
             };
         }
         // 5. Check Scope Divergence
         const scopeA = (claimA.scope || 'unknown').toLowerCase();
         const scopeB = (claimB.scope || 'unknown').toLowerCase();
-        // If scope differs, but both describe global repo requirement, evaluate cautiously
+        // Isolated service vs repository scopes legitimately diverge
         if (scopeA !== 'unknown' &&
             scopeB !== 'unknown' &&
             scopeA !== scopeB &&
-            scopeA === 'service' &&
-            scopeB === 'repository') {
+            ((scopeA === 'service' && scopeB === 'repository') ||
+                (scopeA === 'repository' && scopeB === 'service'))) {
             divergences.push('scope');
             return {
                 relationship: {

package/dist/analysis/contextAnalyzer.js.map

@@ -1 +1 @@
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package/dist/config/env.js

@@ -27,7 +27,7 @@ const EnvSchema = z.object({
     DATABASE_PATH: z.string().min(1).default(getDefaultDatabasePath()),
     LOG_LEVEL: z.enum(['debug', 'info', 'warn', 'error']).default('info'),
     SERVER_NAME: z.string().min(1).default('contradiction-mcp'),
-    SERVER_VERSION: z.string().min(1).default('0.1.0'),
+    SERVER_VERSION: z.string().min(1).default('0.2.1'),
     GITHUB_TOKEN: z.string().optional(),
     MCP_TRANSPORT: z.enum(['stdio', 'http']).default('stdio'),
     HTTP_HOST: z.string().default('0.0.0.0'),

package/dist/connectors/base/connectorUtils.d.ts

@@ -1,3 +1,4 @@
+import type { ClaimValueType } from '../../domain/entities/claim.js';
 /**
  * Sanitizes an error message or string to ensure tokens, secrets,
  * and sensitive authentication headers are never leaked.
@@ -28,4 +29,4 @@ export declare function hashContent(content: string): string;
  * Heuristically infers the most accurate ClaimValueType from predicate and value
  * (e.g. quantity, version, price, date, status, etc.).
  */
-export declare function inferClaimValueType(predicate: string, value: string): string;
+export declare function inferClaimValueType(predicate: string, value: string): ClaimValueType;

package/dist/connectors/base/connectorUtils.js.map

@@ -1 +1 @@
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package/dist/connectors/document/documentConnector.d.ts

@@ -37,7 +37,9 @@ export declare class DocumentConnector implements Connector<DocumentInput, Docum
     testConnection(input?: DocumentInput): Promise<ConnectionTestResult>;
     fetch(input: DocumentInput): Promise<FetchResult<DocumentRawData>>;
     extractClaims(fetchResult: FetchResult<DocumentRawData>): Promise<ExtractedClaim[]>;
+    private extractFromEmail;
     private extractFromJson;
+    private flattenJsonObject;
     private extractFromYamlOrText;
     private extractFromCsv;
     private extractFromMarkdownOrText;