contradiction-mcp 0.1.0

package/dist/connectors/github/githubExtractor.js

@@ -0,0 +1,469 @@
+import { createClaimExternalId, sanitizeSecrets } from '../base/connectorUtils.js';
+export class GitHubExtractor {
+    /**
+     * Extracts factual claims from a set of repository files.
+     */
+    extractClaims(repo, sourceExternalId, files) {
+        const claims = [];
+        const subject = repo.fullName; // Canonical subject: "owner/repo"
+        for (const file of files) {
+            const lowerPath = file.path.toLowerCase();
+            if (lowerPath === 'package.json' || lowerPath.endsWith('/package.json')) {
+                claims.push(...this.extractFromPackageJson(repo, sourceExternalId, subject, file));
+            }
+            else if (lowerPath === 'dockerfile' ||
+                lowerPath.endsWith('/dockerfile') ||
+                lowerPath.includes('dockerfile.')) {
+                claims.push(...this.extractFromDockerfile(repo, sourceExternalId, subject, file));
+            }
+            else if (lowerPath === 'readme.md' ||
+                lowerPath.endsWith('/readme.md') ||
+                lowerPath === 'readme') {
+                claims.push(...this.extractFromReadme(repo, sourceExternalId, subject, file));
+            }
+            else if (lowerPath.startsWith('.github/workflows/') &&
+                (lowerPath.endsWith('.yml') || lowerPath.endsWith('.yaml'))) {
+                claims.push(...this.extractFromWorkflow(repo, sourceExternalId, subject, file));
+            }
+        }
+        return claims;
+    }
+    /**
+     * Extracts factual claims from package.json.
+     */
+    extractFromPackageJson(repo, sourceExternalId, subject, file) {
+        const claims = [];
+        let pkg;
+        try {
+            pkg = JSON.parse(file.content);
+        }
+        catch {
+            return claims;
+        }
+        const lines = file.content.split('\n');
+        // 1. Engines (node, npm, pnpm, yarn)
+        if (pkg.engines && typeof pkg.engines === 'object') {
+            const engines = pkg.engines;
+            for (const [engineName, engineVal] of Object.entries(engines)) {
+                if (typeof engineVal === 'string' && engineVal.trim()) {
+                    const predicate = `${engineName.toLowerCase()}_version`;
+                    const lineNum = this.findLineNumber(lines, `"${engineName}"`);
+                    const evidence = this.extractEvidence(lines, lineNum);
+                    const rawVal = engineVal.trim();
+                    const isRange = /[><=~^\s*|]/.test(rawVal);
+                    claims.push({
+                        subject,
+                        predicate,
+                        value: rawVal,
+                        valueType: 'version',
+                        confidence: 0.95,
+                        environment: 'production',
+                        scope: 'package',
+                        sourceRole: 'configuration',
+                        isHistorical: false,
+                        valueConstraint: isRange ? rawVal : null,
+                        externalId: createClaimExternalId(sourceExternalId, file.path, predicate),
+                        provenance: {
+                            connector: 'github',
+                            repository: repo.fullName,
+                            filePath: file.path,
+                            url: file.url,
+                            extractionMethod: 'package-engines',
+                            lineRange: lineNum > 0 ? [lineNum, lineNum] : undefined,
+                            observedAt: new Date().toISOString(),
+                            evidence,
+                        },
+                    });
+                }
+            }
+        }
+        // 2. High-value dependencies
+        const highValueDeps = [
+            { name: 'typescript', predicate: 'typescript_version' },
+            { name: 'react', predicate: 'react_version' },
+            { name: 'next', predicate: 'next_version' },
+            { name: 'express', predicate: 'express_version' },
+            { name: '@modelcontextprotocol/sdk', predicate: 'mcp_sdk_version' },
+        ];
+        const prodDeps = pkg.dependencies || {};
+        const devDeps = pkg.devDependencies || {};
+        for (const dep of highValueDeps) {
+            const isDev = dep.name in devDeps;
+            const versionVal = prodDeps[dep.name] ?? devDeps[dep.name];
+            if (typeof versionVal === 'string' && versionVal.trim()) {
+                const lineNum = this.findLineNumber(lines, `"${dep.name}"`);
+                const evidence = this.extractEvidence(lines, lineNum);
+                const rawVal = versionVal.trim();
+                const isRange = /[><=~^\s*|]/.test(rawVal);
+                claims.push({
+                    subject,
+                    predicate: dep.predicate,
+                    value: rawVal,
+                    valueType: 'version',
+                    confidence: 0.9,
+                    environment: isDev ? 'development' : 'production',
+                    scope: 'package',
+                    sourceRole: 'configuration',
+                    isHistorical: false,
+                    valueConstraint: isRange ? rawVal : null,
+                    externalId: createClaimExternalId(sourceExternalId, file.path, dep.predicate),
+                    provenance: {
+                        connector: 'github',
+                        repository: repo.fullName,
+                        filePath: file.path,
+                        url: file.url,
+                        extractionMethod: 'package-dependency',
+                        lineRange: lineNum > 0 ? [lineNum, lineNum] : undefined,
+                        observedAt: new Date().toISOString(),
+                        evidence,
+                    },
+                });
+            }
+        }
+        // 3. Scripts port specification
+        if (pkg.scripts && typeof pkg.scripts === 'object') {
+            const scripts = pkg.scripts;
+            for (const [scriptName, scriptVal] of Object.entries(scripts)) {
+                if (typeof scriptVal === 'string') {
+                    const portMatch = scriptVal.match(/(?:--port\s+|PORT=)(\d{2,5})/i);
+                    if (portMatch) {
+                        const lineNum = this.findLineNumber(lines, `"${scriptName}"`);
+                        const evidence = this.extractEvidence(lines, lineNum);
+                        const isDev = scriptName.toLowerCase().includes('dev') || scriptName.toLowerCase().includes('test');
+                        claims.push({
+                            subject,
+                            predicate: 'port',
+                            value: portMatch[1],
+                            valueType: 'quantity',
+                            confidence: 0.85,
+                            environment: isDev ? 'development' : 'production',
+                            scope: 'service',
+                            sourceRole: 'configuration',
+                            isHistorical: false,
+                            externalId: createClaimExternalId(sourceExternalId, file.path, 'port', scriptName),
+                            provenance: {
+                                connector: 'github',
+                                repository: repo.fullName,
+                                filePath: file.path,
+                                url: file.url,
+                                extractionMethod: 'package-script-port',
+                                lineRange: lineNum > 0 ? [lineNum, lineNum] : undefined,
+                                observedAt: new Date().toISOString(),
+                                evidence,
+                            },
+                        });
+                    }
+                }
+            }
+        }
+        return claims;
+    }
+    /**
+     * Extracts factual claims from Dockerfile.
+     */
+    extractFromDockerfile(repo, sourceExternalId, subject, file) {
+        const claims = [];
+        const lines = file.content.split('\n');
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i].trim();
+            const lineNum = i + 1;
+            // 1. FROM instruction
+            const fromMatch = line.match(/^FROM\s+(?:--platform=\S+\s+)?([a-zA-Z0-9_./-]+)(?::([a-zA-Z0-9_.-]+))?/i);
+            if (fromMatch) {
+                const image = fromMatch[1].toLowerCase();
+                const tag = fromMatch[2];
+                if (image.includes('node') && tag) {
+                    const versionOnly = tag.split('-')[0]; // e.g. 20-alpine -> 20
+                    claims.push({
+                        subject,
+                        predicate: 'node_version',
+                        value: versionOnly,
+                        valueType: 'version',
+                        confidence: 0.9,
+                        environment: 'deployment',
+                        scope: 'service',
+                        sourceRole: 'configuration',
+                        isHistorical: false,
+                        externalId: createClaimExternalId(sourceExternalId, file.path, 'node_version'),
+                        provenance: {
+                            connector: 'github',
+                            repository: repo.fullName,
+                            filePath: file.path,
+                            url: file.url,
+                            extractionMethod: 'dockerfile-base-image',
+                            lineRange: [lineNum, lineNum],
+                            observedAt: new Date().toISOString(),
+                            evidence: line,
+                        },
+                    });
+                }
+                else if (image.includes('python') && tag) {
+                    const versionOnly = tag.split('-')[0];
+                    claims.push({
+                        subject,
+                        predicate: 'python_version',
+                        value: versionOnly,
+                        valueType: 'version',
+                        confidence: 0.9,
+                        environment: 'deployment',
+                        scope: 'service',
+                        sourceRole: 'configuration',
+                        isHistorical: false,
+                        externalId: createClaimExternalId(sourceExternalId, file.path, 'python_version'),
+                        provenance: {
+                            connector: 'github',
+                            repository: repo.fullName,
+                            filePath: file.path,
+                            url: file.url,
+                            extractionMethod: 'dockerfile-base-image',
+                            lineRange: [lineNum, lineNum],
+                            observedAt: new Date().toISOString(),
+                            evidence: line,
+                        },
+                    });
+                }
+                else if (image.includes('postgres') && tag) {
+                    const versionOnly = tag.split('-')[0];
+                    claims.push({
+                        subject,
+                        predicate: 'postgres_version',
+                        value: versionOnly,
+                        valueType: 'version',
+                        confidence: 0.9,
+                        environment: 'deployment',
+                        scope: 'service',
+                        sourceRole: 'configuration',
+                        isHistorical: false,
+                        externalId: createClaimExternalId(sourceExternalId, file.path, 'postgres_version'),
+                        provenance: {
+                            connector: 'github',
+                            repository: repo.fullName,
+                            filePath: file.path,
+                            url: file.url,
+                            extractionMethod: 'dockerfile-base-image',
+                            lineRange: [lineNum, lineNum],
+                            observedAt: new Date().toISOString(),
+                            evidence: line,
+                        },
+                    });
+                }
+            }
+            // 2. EXPOSE instruction
+            const exposeMatch = line.match(/^EXPOSE\s+(\d{2,5})/i);
+            if (exposeMatch) {
+                claims.push({
+                    subject,
+                    predicate: 'port',
+                    value: exposeMatch[1],
+                    valueType: 'quantity',
+                    confidence: 0.9,
+                    environment: 'deployment',
+                    scope: 'service',
+                    sourceRole: 'configuration',
+                    isHistorical: false,
+                    externalId: createClaimExternalId(sourceExternalId, file.path, 'port', exposeMatch[1]),
+                    provenance: {
+                        connector: 'github',
+                        repository: repo.fullName,
+                        filePath: file.path,
+                        url: file.url,
+                        extractionMethod: 'dockerfile-expose-port',
+                        lineRange: [lineNum, lineNum],
+                        observedAt: new Date().toISOString(),
+                        evidence: line,
+                    },
+                });
+            }
+        }
+        return claims;
+    }
+    /**
+     * Extracts factual claims from README.md.
+     */
+    extractFromReadme(repo, sourceExternalId, subject, file) {
+        const claims = [];
+        const lines = file.content.split('\n');
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i];
+            const lineNum = i + 1;
+            const lower = line.toLowerCase();
+            const isHistorical = /(?:previously|deprecated|former|legacy|dropped\s+support|used\s+to)/i.test(lower);
+            const isExample = /(?:for\s+example|e\.g\.|sample|tutorial|docker\s+run)/i.test(lower);
+            const sourceRole = isExample ? 'example' : isHistorical ? 'historical' : 'documentation';
+            // 1. Node version pattern
+            const nodeMatch = line.match(/(?:(?:requires?|prerequisites?|built with|runs on)\s+)?node(?:\.js)?\s*(?:version)?\s*[:=~^>=<]*\s*([vV]?\d+(?:\.\d+)*)/i);
+            if (nodeMatch && !lower.includes('npm')) {
+                const rawVersion = nodeMatch[1];
+                if (rawVersion !== '0' && !rawVersion.startsWith('202') && !rawVersion.startsWith('199')) {
+                    const isRange = /[><=~^\s*|]/.test(line);
+                    claims.push({
+                        subject,
+                        predicate: 'node_version',
+                        value: rawVersion,
+                        valueType: 'version',
+                        confidence: 0.8,
+                        environment: 'documentation',
+                        scope: 'repository',
+                        sourceRole,
+                        isHistorical,
+                        valueConstraint: isRange ? line.trim().slice(0, 50) : null,
+                        externalId: createClaimExternalId(sourceExternalId, file.path, 'node_version', isHistorical ? 'historical' : undefined),
+                        provenance: {
+                            connector: 'github',
+                            repository: repo.fullName,
+                            filePath: file.path,
+                            url: file.url,
+                            extractionMethod: 'readme-node-version-pattern',
+                            lineRange: [lineNum, lineNum],
+                            observedAt: new Date().toISOString(),
+                            evidence: line.trim().slice(0, 160),
+                        },
+                    });
+                }
+            }
+            // 2. Port pattern
+            const portMatch = line.match(/(?:default\s+port|(?:runs?|running|listening|server)\s+(?:on\s+)?port|port\s*:)\s*[:=]?\s*(\d{2,5})\b/i);
+            if (portMatch) {
+                claims.push({
+                    subject,
+                    predicate: 'port',
+                    value: portMatch[1],
+                    valueType: 'quantity',
+                    confidence: 0.8,
+                    environment: 'documentation',
+                    scope: 'repository',
+                    sourceRole,
+                    isHistorical,
+                    externalId: createClaimExternalId(sourceExternalId, file.path, 'port', portMatch[1]),
+                    provenance: {
+                        connector: 'github',
+                        repository: repo.fullName,
+                        filePath: file.path,
+                        url: file.url,
+                        extractionMethod: 'readme-port-pattern',
+                        lineRange: [lineNum, lineNum],
+                        observedAt: new Date().toISOString(),
+                        evidence: line.trim().slice(0, 160),
+                    },
+                });
+            }
+        }
+        return claims;
+    }
+    /**
+     * Extracts factual claims from GitHub Actions workflow files.
+     */
+    extractFromWorkflow(repo, sourceExternalId, subject, file) {
+        const claims = [];
+        const lines = file.content.split('\n');
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i];
+            const lineNum = i + 1;
+            // 1. Node version in setup-node step or matrix
+            const nodeVersionMatch = line.match(/node-version:\s*(?:\[([^\]]+)\]|['"]?([0-9.x]+)['"]?)/i);
+            if (nodeVersionMatch) {
+                if (nodeVersionMatch[2]) {
+                    const version = nodeVersionMatch[2].replace(/\.x$/, '');
+                    claims.push({
+                        subject,
+                        predicate: 'node_version',
+                        value: version,
+                        valueType: 'version',
+                        confidence: 0.9,
+                        environment: 'ci',
+                        scope: 'workflow',
+                        sourceRole: 'configuration',
+                        isHistorical: false,
+                        multiValueContext: 'ci_step',
+                        externalId: createClaimExternalId(sourceExternalId, file.path, 'node_version', version),
+                        provenance: {
+                            connector: 'github',
+                            repository: repo.fullName,
+                            filePath: file.path,
+                            url: file.url,
+                            extractionMethod: 'github-workflow-node-version',
+                            lineRange: [lineNum, lineNum],
+                            observedAt: new Date().toISOString(),
+                            evidence: line.trim().slice(0, 160),
+                        },
+                    });
+                }
+                else if (nodeVersionMatch[1]) {
+                    const items = nodeVersionMatch[1]
+                        .split(',')
+                        .map((s) => s.trim().replace(/['"]/g, '').replace(/\.x$/, ''));
+                    for (const item of items) {
+                        if (item) {
+                            claims.push({
+                                subject,
+                                predicate: 'node_version',
+                                value: item,
+                                valueType: 'version',
+                                confidence: 0.9,
+                                environment: 'ci',
+                                scope: 'workflow',
+                                sourceRole: 'configuration',
+                                isHistorical: false,
+                                multiValueContext: 'ci_matrix',
+                                externalId: createClaimExternalId(sourceExternalId, file.path, 'node_version', item),
+                                provenance: {
+                                    connector: 'github',
+                                    repository: repo.fullName,
+                                    filePath: file.path,
+                                    url: file.url,
+                                    extractionMethod: 'github-workflow-node-matrix',
+                                    lineRange: [lineNum, lineNum],
+                                    observedAt: new Date().toISOString(),
+                                    evidence: line.trim().slice(0, 160),
+                                },
+                            });
+                        }
+                    }
+                }
+            }
+            // 2. CI Runner OS
+            const runsOnMatch = line.match(/runs-on:\s*([a-zA-Z0-9_.-]+)/i);
+            if (runsOnMatch) {
+                const os = runsOnMatch[1].trim();
+                claims.push({
+                    subject,
+                    predicate: 'ci_runner_os',
+                    value: os,
+                    valueType: 'name',
+                    confidence: 0.95,
+                    environment: 'ci',
+                    scope: 'workflow',
+                    sourceRole: 'configuration',
+                    isHistorical: false,
+                    multiValueContext: 'ci_runner',
+                    externalId: createClaimExternalId(sourceExternalId, file.path, 'ci_runner_os', os),
+                    provenance: {
+                        connector: 'github',
+                        repository: repo.fullName,
+                        filePath: file.path,
+                        url: file.url,
+                        extractionMethod: 'github-workflow-runner',
+                        lineRange: [lineNum, lineNum],
+                        observedAt: new Date().toISOString(),
+                        evidence: line.trim().slice(0, 160),
+                    },
+                });
+            }
+        }
+        return claims;
+    }
+    findLineNumber(lines, text) {
+        for (let i = 0; i < lines.length; i++) {
+            if (lines[i].includes(text)) {
+                return i + 1;
+            }
+        }
+        return 1;
+    }
+    extractEvidence(lines, lineNum) {
+        const targetIdx = Math.max(0, lineNum - 1);
+        const line = lines[targetIdx] || '';
+        return sanitizeSecrets(line.trim().slice(0, 200));
+    }
+}
+//# sourceMappingURL=githubExtractor.js.map

package/dist/connectors/github/githubExtractor.js.map

@@ -0,0 +1 @@
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package/dist/connectors/github/githubNormalizer.d.ts

@@ -0,0 +1,11 @@
+import { ExtractedClaim } from '../types/fetchResult.js';
+import { ValueComparator } from '../../analysis/valueComparator.js';
+export declare class GitHubNormalizer {
+    private readonly comparator;
+    constructor(comparator?: ValueComparator);
+    /**
+     * Normalizes subject, predicate, and values of extracted claims
+     * so they are consistent with the contradiction engine's comparator and matcher.
+     */
+    normalizeClaims(claims: ExtractedClaim[]): ExtractedClaim[];
+}

package/dist/connectors/github/githubNormalizer.js

@@ -0,0 +1,24 @@
+import { normalizeText } from '../../analysis/claimMatcher.js';
+import { ValueComparator } from '../../analysis/valueComparator.js';
+export class GitHubNormalizer {
+    comparator;
+    constructor(comparator) {
+        this.comparator = comparator || new ValueComparator();
+    }
+    /**
+     * Normalizes subject, predicate, and values of extracted claims
+     * so they are consistent with the contradiction engine's comparator and matcher.
+     */
+    normalizeClaims(claims) {
+        return claims.map((claim) => {
+            const normPredicate = normalizeText(claim.predicate).replace(/\s+/g, '_');
+            const comparison = this.comparator.compare(claim.value, claim.value, claim.valueType);
+            return {
+                ...claim,
+                predicate: normPredicate,
+                normalizedValue: comparison.normalizedA || claim.value.trim(),
+            };
+        });
+    }
+}
+//# sourceMappingURL=githubNormalizer.js.map

package/dist/connectors/github/githubNormalizer.js.map

@@ -0,0 +1 @@
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package/dist/connectors/github/githubTypes.d.ts

@@ -0,0 +1,55 @@
+export interface GitHubRepoResponse {
+    id: number;
+    name: string;
+    full_name: string;
+    owner: {
+        login: string;
+    };
+    private: boolean;
+    html_url: string;
+    description: string | null;
+    default_branch: string;
+}
+export interface GitHubContentFile {
+    type: 'file' | 'dir' | 'symlink' | 'submodule';
+    name: string;
+    path: string;
+    sha: string;
+    size: number;
+    url: string;
+    html_url: string;
+    download_url: string | null;
+    content?: string;
+    encoding?: string;
+}
+export interface GitHubRateLimitInfo {
+    limit: number;
+    remaining: number;
+    resetAt: Date;
+}
+export interface GitHubConnectorInput {
+    owner: string;
+    repo: string;
+    branch?: string;
+    targetFiles?: string[];
+}
+export interface GitHubFilePayload {
+    path: string;
+    content: string;
+    url: string;
+    sha: string;
+    size: number;
+}
+export interface GitHubRepoInfo {
+    owner: string;
+    repo: string;
+    fullName: string;
+    defaultBranch: string;
+    htmlUrl: string;
+    description: string | null;
+}
+export interface GitHubFetchData {
+    repository: GitHubRepoInfo;
+    files: GitHubFilePayload[];
+    rateLimit?: GitHubRateLimitInfo;
+}

package/dist/connectors/github/githubTypes.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=githubTypes.js.map

package/dist/connectors/github/githubTypes.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"githubTypes.js","sourceRoot":"","sources":["../../../src/connectors/github/githubTypes.ts"],"names":[],"mappings":""}

package/dist/connectors/syncService.d.ts

@@ -0,0 +1,60 @@
+import { DatabaseManager } from '../storage/database.js';
+import { ConnectorRegistry } from './connectorRegistry.js';
+import { DiscoveryService } from '../discovery/discoveryService.js';
+export interface SyncOptions {
+    runDiscoveryAfterSync?: boolean;
+    minConfidence?: number;
+}
+export interface SyncSummary {
+    status: 'completed' | 'failed';
+    source: {
+        id: string;
+        type: string;
+        name: string;
+        externalId: string;
+    };
+    repository?: string;
+    filesInspected: number;
+    claimsExtracted: number;
+    claimsCreated: number;
+    claimsUpdated: number;
+    durationMs: number;
+    contradictionsFound?: number;
+    newContradictions?: number;
+    error?: string;
+}
+export declare class SyncService {
+    private readonly dbManager;
+    private readonly registry;
+    private readonly discoveryService?;
+    constructor(dbManager: DatabaseManager, registry: ConnectorRegistry, discoveryService?: DiscoveryService);
+    /**
+     * Synchronizes an external source using its registered connector,
+     * extracts and normalizes claims, idempotently upserts them in SQLite,
+     * and optionally runs incremental contradiction discovery.
+     */
+    syncSource(connectorType: string, input: unknown, options?: SyncOptions): Promise<SyncSummary>;
+    /**
+     * Synchronizes multiple external sources with bounded concurrency and failure isolation.
+     */
+    syncSources(requests: Array<{
+        connector: string;
+        input: unknown;
+    }>, options?: SyncOptions & {
+        concurrency?: number;
+    }): Promise<{
+        sourcesRequested: number;
+        sourcesSucceeded: number;
+        sourcesFailed: number;
+        claimsCreated: number;
+        claimsUpdated: number;
+        contradictionsFound: number;
+        durationMs: number;
+        results: Array<{
+            connector: string;
+            status: 'completed' | 'failed';
+            summary?: SyncSummary;
+            error?: string;
+        }>;
+    }>;
+}