context-vault 3.4.2 → 3.4.4

package/node_modules/@context-vault/core/dist/types.d.ts.map

@@ -1 +1 @@
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package/node_modules/@context-vault/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@context-vault/core",
-  "version": "3.4.2",
+  "version": "3.4.4",
   "type": "module",
   "description": "Pure local engine: capture, index, search, and utilities for context-vault",
   "main": "dist/main.js",
@@ -61,6 +61,10 @@
     "./types": {
       "types": "./dist/types.d.ts",
       "import": "./dist/types.js"
+    },
+    "./context": {
+      "types": "./dist/context.d.ts",
+      "import": "./dist/context.js"
     }
   },
   "files": [

package/node_modules/@context-vault/core/src/context.ts

@@ -0,0 +1,65 @@
+/**
+ * Contextual reinstatement: encoding context capture and serialization.
+ *
+ * Inspired by hippocampal contextual reinstatement in neuroscience:
+ * the brain stores the situation (place, task, goal) alongside each memory,
+ * and re-entering a similar situation boosts recall. This module provides
+ * the same mechanism for vault entries.
+ */
+
+export interface EncodingContext {
+  project?: string;
+  arc?: string;
+  task?: string;
+  cwd?: string;
+  session_id?: string;
+  [key: string]: string | undefined;
+}
+
+/**
+ * Serialize an EncodingContext into a natural-language sentence suitable
+ * for embedding with MiniLM. The output is a simple key-value string
+ * that produces meaningful sentence embeddings for similarity matching.
+ *
+ * Example: "project: leadfront, arc: auth-rewrite, task: implementing JWT rotation"
+ */
+export function serializeContext(ctx: EncodingContext): string {
+  const parts: string[] = [];
+  for (const [key, value] of Object.entries(ctx)) {
+    if (value != null && typeof value === 'string' && value.trim()) {
+      parts.push(`${key}: ${value.trim()}`);
+    }
+  }
+  return parts.join(', ');
+}
+
+/**
+ * Parse and validate a context parameter from tool input.
+ * Accepts either a string (used as-is for embedding) or a structured object.
+ * Returns null if the input is empty or invalid.
+ */
+export function parseContextParam(input: unknown): { text: string; structured: EncodingContext | null } | null {
+  if (input == null) return null;
+
+  if (typeof input === 'string') {
+    const trimmed = input.trim();
+    if (!trimmed) return null;
+    return { text: trimmed, structured: null };
+  }
+
+  if (typeof input === 'object' && !Array.isArray(input)) {
+    const obj = input as Record<string, unknown>;
+    const ctx: EncodingContext = {};
+    let hasValue = false;
+    for (const [key, value] of Object.entries(obj)) {
+      if (typeof value === 'string' && value.trim()) {
+        ctx[key] = value.trim();
+        hasValue = true;
+      }
+    }
+    if (!hasValue) return null;
+    return { text: serializeContext(ctx), structured: ctx };
+  }
+
+  return null;
+}

package/node_modules/@context-vault/core/src/db.ts

@@ -175,9 +175,11 @@ export const SCHEMA_DDL = `
   END;
 
   CREATE VIRTUAL TABLE IF NOT EXISTS vault_vec USING vec0(embedding float[384]);
+
+  CREATE VIRTUAL TABLE IF NOT EXISTS vault_ctx_vec USING vec0(embedding float[384]);
 `;
 
-const CURRENT_VERSION = 15;
+const CURRENT_VERSION = 16;
 
 export async function initDatabase(dbPath: string): Promise<DatabaseSync> {
   const sqliteVec = await loadSqliteVec();
@@ -202,6 +204,17 @@ export async function initDatabase(dbPath: string): Promise<DatabaseSync> {
     const version = (db.prepare('PRAGMA user_version').get() as { user_version: number })
       .user_version;
 
+    // v15 -> v16: add vault_ctx_vec table for contextual reinstatement
+    if (version === 15) {
+      try {
+        db.exec('CREATE VIRTUAL TABLE IF NOT EXISTS vault_ctx_vec USING vec0(embedding float[384])');
+        db.exec(`PRAGMA user_version = ${CURRENT_VERSION}`);
+      } catch (e) {
+        console.error(`[context-vault] v15->v16 migration failed: ${(e as Error).message}`);
+      }
+      return db;
+    }
+
     if (version > 0 && version < 15) {
       console.error(`[context-vault] Schema v${version} is outdated. Rebuilding database...`);
 
@@ -243,7 +256,7 @@ export async function initDatabase(dbPath: string): Promise<DatabaseSync> {
       return freshDb;
     }
 
-    if (version < 15) {
+    if (version < 16) {
       db.exec(SCHEMA_DDL);
       db.exec(`PRAGMA user_version = ${CURRENT_VERSION}`);
     }
@@ -279,6 +292,8 @@ export function prepareStatements(db: DatabaseSync): PreparedStatements {
       clearSupersededByRef: db.prepare(
         `UPDATE vault SET superseded_by = NULL WHERE superseded_by = ?`
       ),
+      insertCtxVecStmt: db.prepare(`INSERT INTO vault_ctx_vec (rowid, embedding) VALUES (?, ?)`),
+      deleteCtxVecStmt: db.prepare(`DELETE FROM vault_ctx_vec WHERE rowid = ?`),
     };
   } catch (e) {
     throw new Error(
@@ -301,6 +316,18 @@ export function deleteVec(stmts: PreparedStatements, rowid: number): void {
   stmts.deleteVecStmt.run(safeRowid);
 }
 
+export function insertCtxVec(stmts: PreparedStatements, rowid: number, embedding: Float32Array): void {
+  const safeRowid = BigInt(rowid);
+  if (safeRowid < 1n) throw new Error(`Invalid rowid: ${rowid}`);
+  stmts.insertCtxVecStmt.run(safeRowid, embedding);
+}
+
+export function deleteCtxVec(stmts: PreparedStatements, rowid: number): void {
+  const safeRowid = BigInt(rowid);
+  if (safeRowid < 1n) throw new Error(`Invalid rowid: ${rowid}`);
+  stmts.deleteCtxVecStmt.run(safeRowid);
+}
+
 export function testConnection(db: DatabaseSync): boolean {
   try {
     db.prepare('SELECT 1').get();

package/node_modules/@context-vault/core/src/search.ts

@@ -106,6 +106,7 @@ export async function hybridSearch(
     decayDays = 30,
     includeSuperseeded = false,
     includeEphemeral = false,
+    contextEmbedding = null,
   } = opts;
 
   const rowMap = new Map<string, VaultEntry>();
@@ -209,9 +210,60 @@ export async function hybridSearch(
     }
   }
 
+  // Context vector pass: KNN against vault_ctx_vec for contextual reinstatement
+  const ctxRankedIds: string[] = [];
+  if (contextEmbedding) {
+    try {
+      const ctxVecCount = (
+        ctx.db.prepare('SELECT COUNT(*) as c FROM vault_ctx_vec').get() as { c: number }
+      ).c;
+      if (ctxVecCount > 0) {
+        const ctxRows = ctx.db
+          .prepare(
+            `SELECT v.rowid, v.distance FROM vault_ctx_vec v WHERE embedding MATCH ? ORDER BY distance LIMIT 15`
+          )
+          .all(contextEmbedding, 15) as { rowid: number; distance: number }[];
+
+        if (ctxRows.length) {
+          const ctxRowids = ctxRows.map((cr) => cr.rowid);
+          const placeholders = ctxRowids.map(() => '?').join(',');
+          const ctxHydrated = ctx.db
+            .prepare(`SELECT rowid, * FROM vault WHERE rowid IN (${placeholders})`)
+            .all(...ctxRowids) as unknown as (VaultEntry & { rowid: number })[];
+
+          const ctxByRowid = new Map<number, VaultEntry & { rowid: number }>();
+          for (const row of ctxHydrated) ctxByRowid.set(row.rowid, row);
+
+          for (const cr of ctxRows) {
+            const row = ctxByRowid.get(cr.rowid);
+            if (!row) continue;
+            if (kindFilter && row.kind !== kindFilter) continue;
+            if (categoryFilter && row.category !== categoryFilter) continue;
+            if (excludeEvents && row.category === 'event') continue;
+            if (since && row.created_at < since) continue;
+            if (until && row.created_at > until) continue;
+            if (row.expires_at && new Date(row.expires_at) <= new Date()) continue;
+
+            const { rowid: _rowid, ...cleanRow } = row;
+            ctxRankedIds.push(cleanRow.id);
+            if (!rowMap.has(cleanRow.id)) rowMap.set(cleanRow.id, cleanRow);
+            if (!idToRowid.has(cleanRow.id)) idToRowid.set(cleanRow.id, Number(row.rowid));
+          }
+        }
+      }
+    } catch (err) {
+      if (!(err as Error).message?.includes('no such table')) {
+        console.error(`[retrieve] Context vector search error: ${(err as Error).message}`);
+      }
+    }
+  }
+
   if (rowMap.size === 0) return [];
 
-  const rrfScores = reciprocalRankFusion([ftsRankedIds, vecRankedIds]);
+  // Build ranked lists for RRF: content FTS + content vec + optional context vec
+  const rankedLists = [ftsRankedIds, vecRankedIds];
+  if (ctxRankedIds.length > 0) rankedLists.push(ctxRankedIds);
+  const rrfScores = reciprocalRankFusion(rankedLists);
 
   for (const [id, entry] of rowMap) {
     const boost = recencyBoost(entry.created_at, entry.category, decayDays);
@@ -274,7 +326,7 @@ export async function hybridSearch(
   return finalPage;
 }
 
-function trackAccess(ctx: BaseCtx, entries: SearchResult[]): void {
+export function trackAccess(ctx: BaseCtx, entries: SearchResult[]): void {
   if (!entries.length) return;
   try {
     const placeholders = entries.map(() => '?').join(',');

package/node_modules/@context-vault/core/src/types.ts

@@ -53,6 +53,8 @@ export interface PreparedStatements {
   deleteVecStmt: StatementSync;
   updateSupersededBy: StatementSync;
   clearSupersededByRef: StatementSync;
+  insertCtxVecStmt: StatementSync;
+  deleteCtxVecStmt: StatementSync;
 }
 
 export interface VaultEntry {
@@ -151,6 +153,8 @@ export interface BaseCtx {
   embed: (text: string) => Promise<Float32Array | null>;
   insertVec: (rowid: number, embedding: Float32Array) => void;
   deleteVec: (rowid: number) => void;
+  insertCtxVec: (rowid: number, embedding: Float32Array) => void;
+  deleteCtxVec: (rowid: number) => void;
 }
 
 export interface SearchOptions {
@@ -164,4 +168,6 @@ export interface SearchOptions {
   decayDays?: number;
   includeSuperseeded?: boolean;
   includeEphemeral?: boolean;
+  /** Pre-computed context embedding for contextual reinstatement boosting. */
+  contextEmbedding?: Float32Array | null;
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "context-vault",
-  "version": "3.4.2",
+  "version": "3.4.4",
   "type": "module",
   "description": "Persistent memory for AI agents — saves and searches knowledge across sessions",
   "bin": {
@@ -63,7 +63,7 @@
     "@context-vault/core"
   ],
   "dependencies": {
-    "@context-vault/core": "^3.4.2",
+    "@context-vault/core": "^3.4.4",
     "@modelcontextprotocol/sdk": "^1.26.0",
     "adm-zip": "^0.5.16",
     "sqlite-vec": "^0.1.0"

package/src/server.ts

@@ -26,6 +26,8 @@ import {
   prepareStatements,
   insertVec,
   deleteVec,
+  insertCtxVec,
+  deleteCtxVec,
 } from '@context-vault/core/db';
 import { registerTools } from './register-tools.js';
 import { pruneExpired } from '@context-vault/core/index';
@@ -176,6 +178,92 @@ ${progArgs.map(a => `    <string>${a}</string>`).join('\n')}
   }
 }
 
+/**
+ * Auto-update: check npm for a newer version. In daemon (HTTP) mode,
+ * install the update and gracefully restart. In stdio mode, just log.
+ */
+async function autoUpdate(isDaemon: boolean): Promise<string | null> {
+  const { execSync, spawn: spawnProc } = await import('node:child_process');
+  // Use a non-blocking npm check to avoid event loop stalls during reindex
+  const latest = await new Promise<string>((resolve, reject) => {
+    const child = spawnProc('npm', ['view', 'context-vault', 'version'], {
+      stdio: ['pipe', 'pipe', 'pipe'],
+      timeout: 10000,
+    });
+    let out = '';
+    child.stdout?.on('data', (d: Buffer) => { out += d.toString(); });
+    child.on('close', (code: number | null) => {
+      if (code === 0 && out.trim()) resolve(out.trim());
+      else reject(new Error(`npm view failed (code ${code})`));
+    });
+    child.on('error', reject);
+  }).catch(() => null as string | null) as string;
+
+  if (!latest) return null; // offline or registry unreachable
+  if (latest === pkg.version) return latest;
+
+  console.error(`[context-vault] Update available: v${pkg.version} -> v${latest}`);
+
+  if (!isDaemon) {
+    console.error('[context-vault] Run: context-vault update');
+    return latest;
+  }
+
+  // Daemon mode: auto-install and restart
+  console.error(`[context-vault] Auto-updating to v${latest}...`);
+  try {
+    execSync('npm install -g context-vault@latest', {
+      encoding: 'utf-8',
+      timeout: 120000,
+      stdio: ['pipe', 'pipe', 'pipe'],
+    });
+    console.error(`[context-vault] Installed v${latest}. Restarting daemon...`);
+
+    // Find our own server.js path in the updated install
+    const newBin = execSync('which context-vault', {
+      encoding: 'utf-8',
+      timeout: 5000,
+      stdio: ['pipe', 'pipe', 'pipe'],
+    }).trim();
+
+    // Resolve the actual package root from the binary
+    const { readlinkSync } = await import('node:fs');
+    const { resolve: resolvePath } = await import('node:path');
+    let binTarget = newBin;
+    try { binTarget = readlinkSync(newBin); } catch {}
+    const newPkgRoot = resolvePath(dirname(binTarget), '..');
+    const newServerJs = join(newPkgRoot, 'dist', 'server.js');
+
+    // Spawn the new version as a replacement daemon
+    const portIdx = process.argv.indexOf('--port');
+    const port = portIdx !== -1 ? process.argv[portIdx + 1] : '3377';
+    const args = [newServerJs, '--http', '--port', port];
+
+    // Pass through vault-dir if specified
+    const vaultIdx = process.argv.indexOf('--vault-dir');
+    if (vaultIdx !== -1 && process.argv[vaultIdx + 1]) {
+      args.push('--vault-dir', process.argv[vaultIdx + 1]);
+    }
+
+    const { spawn } = await import('node:child_process');
+    const child = spawn(process.execPath, args, {
+      detached: true,
+      stdio: 'ignore',
+      env: { ...process.env, NODE_OPTIONS: '--no-warnings=ExperimentalWarning', CONTEXT_VAULT_NO_DAEMON: '1' },
+    });
+    child.unref();
+
+    // Give the new process a moment to bind the port, then exit
+    await new Promise(r => setTimeout(r, 2000));
+    console.error(`[context-vault] New daemon spawned (PID ${child.pid}). Old daemon exiting.`);
+    process.exit(0);
+  } catch (e) {
+    console.error(`[context-vault] Auto-update failed: ${(e as Error).message}`);
+    console.error('[context-vault] Run manually: context-vault update');
+  }
+  return latest;
+}
+
 async function main(): Promise<void> {
   let phase = 'CONFIG';
   let db: import('node:sqlite').DatabaseSync | undefined;
@@ -242,6 +330,8 @@ async function main(): Promise<void> {
       embed,
       insertVec: (rowid: number, embedding: Float32Array) => insertVec(stmts, rowid, embedding),
       deleteVec: (rowid: number) => deleteVec(stmts, rowid),
+      insertCtxVec: (rowid: number, embedding: Float32Array) => insertCtxVec(stmts, rowid, embedding),
+      deleteCtxVec: (rowid: number) => deleteCtxVec(stmts, rowid),
       activeOps: { count: 0 },
       toolStats: { ok: 0, errors: 0, lastError: null },
     };
@@ -337,6 +427,7 @@ async function main(): Promise<void> {
     process.on('SIGTERM', () => shutdown('SIGTERM'));
 
     phase = 'CONNECTED';
+    let latestKnownVersion: string | null = null;
 
     const useHttp = process.argv.includes('--http');
 
@@ -354,6 +445,8 @@ async function main(): Promise<void> {
         res.end(JSON.stringify({
           ok: true,
           version: pkg.version,
+          latestVersion: latestKnownVersion,
+          updateAvailable: latestKnownVersion ? latestKnownVersion !== pkg.version : null,
           pid: process.pid,
           uptime: process.uptime(),
           sessions: Object.keys(transports).length,
@@ -391,15 +484,34 @@ async function main(): Promise<void> {
             await transport.handleRequest(req, res, (req as any).body);
             return;
           } else if (sessionId) {
-            // Stale session (e.g., daemon restarted). Per MCP spec, 404 tells
-            // the client to re-initialize automatically.
-            res.writeHead(404, { 'Content-Type': 'application/json' });
-            res.end(JSON.stringify({
-              jsonrpc: '2.0',
-              error: { code: -32000, message: 'Session not found. Please reinitialize.' },
-              id: null,
-            }));
-            return;
+            // Stale session (e.g., daemon restarted). Claude Code's MCP client
+            // does not auto-reinitialize on 404, so we recover transparently:
+            // create a new transport reusing the stale session ID, force it into
+            // initialized state, and handle the request as if nothing happened.
+            console.error(`[context-vault] Recovering stale session ${sessionId.slice(0, 8)}...`);
+
+            transport = new StreamableHTTPServerTransport({
+              sessionIdGenerator: () => sessionId,
+              onsessioninitialized: (sid: string) => {
+                transports[sid] = transport;
+              },
+            });
+            transport.onclose = () => {
+              if (transports[sessionId]) delete transports[sessionId];
+            };
+
+            const sessionServer = createServer();
+            await sessionServer.connect(transport);
+
+            // Force transport into initialized state, bypassing the initialize
+            // handshake. The inner WebStandardStreamableHTTPServerTransport holds
+            // the _initialized flag and sessionId.
+            const inner = (transport as any)._webStandardTransport;
+            inner._initialized = true;
+            inner.sessionId = sessionId;
+            transports[sessionId] = transport;
+
+            // Fall through to handleRequest below
           } else {
             res.writeHead(400, { 'Content-Type': 'application/json' });
             res.end(JSON.stringify({
@@ -486,24 +598,18 @@ async function main(): Promise<void> {
       }
     }
 
-    setTimeout(() => {
-      import('node:child_process')
-        .then(({ execSync }) => {
-          try {
-            const latest = execSync('npm view context-vault version', {
-              encoding: 'utf-8',
-              timeout: 5000,
-              stdio: ['pipe', 'pipe', 'pipe'],
-            }).trim();
-            if (latest && latest !== pkg.version) {
-              console.error(
-                `[context-vault] Update available: v${pkg.version} → v${latest}. Run: context-vault update`
-              );
-            }
-          } catch {}
-        })
-        .catch(() => {});
-    }, 3000);
+    // Auto-update check (and apply for daemon mode)
+    const updateCheck = async () => {
+      const result = await autoUpdate(useHttp);
+      if (result) latestKnownVersion = result;
+    };
+    setTimeout(() => updateCheck().catch((e) => {
+      console.error(`[context-vault] Update check failed: ${(e as Error).message}`);
+    }), 5000);
+    // Re-check daily for long-running daemons
+    if (useHttp) {
+      setInterval(() => updateCheck().catch(() => {}), 24 * 60 * 60 * 1000);
+    }
   } catch (rawErr) {
     const err = rawErr as Error;
     const dataDir = config?.dataDir || join(homedir(), '.context-mcp');

package/src/tools/get-context.ts

@@ -2,9 +2,10 @@ import { z } from 'zod';
 import { createHash } from 'node:crypto';
 import { readFileSync, existsSync } from 'node:fs';
 import { resolve } from 'node:path';
-import { hybridSearch } from '@context-vault/core/search';
+import { hybridSearch, trackAccess } from '@context-vault/core/search';
 import { categoryFor } from '@context-vault/core/categories';
 import { normalizeKind } from '@context-vault/core/files';
+import { parseContextParam } from '@context-vault/core/context';
 import { resolveTemporalParams } from '../temporal.js';
 import { collectLinkedEntries } from '../linking.js';
 import { ok, err, errWithHint } from '../helpers.js';
@@ -346,6 +347,12 @@ export const inputSchema = {
     .describe(
       'When true with identity_key, return a clear "not found" instead of falling through to semantic search on miss. Default: false.'
     ),
+  context: z
+    .any()
+    .optional()
+    .describe(
+      'Current context for contextual reinstatement. Boosts entries that were saved in a similar context. Pass a structured object (e.g. { project: "myapp", arc: "auth-rewrite", task: "debugging token expiry" }) or a free-text string. Entries saved with matching encoding_context will rank higher.'
+    ),
 };
 
 export async function handler(
@@ -369,6 +376,7 @@ export async function handler(
     follow_links,
     body_limit,
     strict,
+    context,
   }: Record<string, any>,
   ctx: LocalCtx,
   { ensureIndexed, reindexFailed }: SharedCtx
@@ -413,6 +421,7 @@ export async function handler(
     if (!kindFilter) return err('identity_key requires kind to be specified', 'INVALID_INPUT');
     const match = ctx.stmts.getByIdentityKey.get(kindFilter, identity_key) as any;
     if (match) {
+      trackAccess(ctx, [{ ...match, score: 1 }]);
       const entryTags = match.tags ? JSON.parse(match.tags) : [];
       const tagStr = entryTags.length ? entryTags.join(', ') : 'none';
       const relPath =
@@ -452,6 +461,17 @@ export async function handler(
     ? Math.min(effectiveLimit * 10, MAX_FETCH_LIMIT)
     : effectiveLimit;
 
+  // Generate context embedding for contextual reinstatement boosting
+  let contextEmbedding: Float32Array | null = null;
+  const parsedCtx = parseContextParam(context);
+  if (parsedCtx?.text) {
+    try {
+      contextEmbedding = await ctx.embed(parsedCtx.text);
+    } catch {
+      // Non-fatal: proceed without context boosting
+    }
+  }
+
   let filtered: any[];
   if (hasQuery) {
     // Hybrid search mode
@@ -465,6 +485,7 @@ export async function handler(
       decayDays: config.eventDecayDays || 30,
       includeSuperseeded: include_superseded ?? false,
       includeEphemeral: include_ephemeral ?? false,
+      contextEmbedding,
     });
 
     // Post-filter by tags if provided, then apply requested limit
@@ -532,6 +553,9 @@ export async function handler(
 
     // Add score field for consistent output
     for (const r of filtered) r.score = 0;
+
+    // Track access for filter-only results (hybrid search tracks its own)
+    trackAccess(ctx, filtered);
   }
 
   // Brief score boost: briefs rank slightly higher so consolidated snapshots