container-superposition 0.1.5 → 0.1.7

package/dist/tool/schema/project-config.js.map

@@ -1 +1 @@
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package/dist/tool/schema/types.d.ts

@@ -9,11 +9,16 @@ export type PackageManager = 'apt' | 'apk';
  * Determines environment-specific optimizations and compatibility checks
  */
 export type DeploymentTarget = 'local' | 'codespaces' | 'gitpod' | 'devpod';
-export type LanguageOverlay = 'dotnet' | 'nodejs' | 'python' | 'mkdocs' | 'java' | 'go' | 'rust' | 'bun' | 'powershell';
-export type DatabaseOverlay = 'postgres' | 'redis' | 'mongodb' | 'mysql' | 'sqlserver' | 'sqlite' | 'minio' | 'rabbitmq' | 'redpanda' | 'nats';
-export type CloudTool = 'azure-cli' | 'aws-cli' | 'gcloud' | 'kubectl-helm' | 'terraform' | 'pulumi';
-export type DevTool = 'docker-in-docker' | 'docker-sock' | 'codex' | 'playwright' | 'git-helpers' | 'pre-commit' | 'commitlint' | 'just' | 'direnv' | 'modern-cli-tools' | 'ngrok' | 'spec-kit' | 'claude-code' | 'gemini-cli' | 'amp' | 'windsurf-cli' | 'opencode';
-export type ObservabilityTool = 'otel-collector' | 'jaeger' | 'prometheus' | 'grafana' | 'loki';
+export type LanguageOverlay = 'dotnet' | 'nodejs' | 'python' | 'mkdocs' | 'java' | 'go' | 'rust' | 'bun' | 'jupyter' | 'powershell';
+export type DatabaseOverlay = 'postgres' | 'redis' | 'mongodb' | 'mysql' | 'sqlserver' | 'sqlite' | 'duckdb' | 'minio' | 'rabbitmq' | 'redpanda' | 'nats';
+export type CloudTool = 'azure-cli' | 'aws-cli' | 'gcloud' | 'cloudflared' | 'kubectl-helm' | 'kind' | 'localstack' | 'terraform' | 'pulumi';
+export type DevTool = 'docker-in-docker' | 'docker-sock' | 'codex' | 'playwright' | 'git-helpers' | 'grpc-tools' | 'keycloak' | 'mailpit' | 'pre-commit' | 'commitlint' | 'just' | 'direnv' | 'modern-cli-tools' | 'ngrok' | 'openapi-tools' | 'pandoc' | 'spec-kit' | 'tilt' | 'claude-code' | 'gemini-cli' | 'amp' | 'windsurf-cli' | 'opencode' | 'mkdocs2' | 'devcontainer-cli';
+export type ObservabilityTool = 'alertmanager' | 'otel-collector' | 'otel-demo-nodejs' | 'otel-demo-python' | 'jaeger' | 'prometheus' | 'promtail' | 'grafana' | 'loki' | 'tempo';
+/**
+ * Union of all overlay ID types — used for the flat `overlays` field
+ * in project config and anywhere an overlay ID is accepted regardless of category.
+ */
+export type OverlayId = LanguageOverlay | DatabaseOverlay | CloudTool | DevTool | ObservabilityTool;
 export type Database = 'none' | 'postgres' | 'redis' | 'postgres+redis';
 export interface DevContainerConfig {
     /**
@@ -150,6 +155,7 @@ export interface OverlayMetadata {
     order?: number;
     imports?: string[];
     minimal?: boolean;
+    hidden?: boolean;
 }
 /**
  * User choice configuration for presets
@@ -287,6 +293,79 @@ export interface ProjectConfigCustomizationsInput {
         content: string;
     }>;
 }
+export type DiagnosticCategory = 'environment' | 'overlay' | 'manifest' | 'merge' | 'ports';
+/**
+ * Whether a diagnostic finding can be automatically remediated.
+ */
+export type FixEligibility = 'automatic' | 'manual-only' | 'not-applicable';
+export type RecheckScope = 'environment' | 'manifest' | 'devcontainer' | 'full';
+export type SafetyClass = 'safe-unattended' | 'requires-manual-action';
+export type ExecutionKind = 'shell-command' | 'manifest-migration' | 'regeneration' | 'no-op';
+export type FixOutcome = 'fixed' | 'already-compliant' | 'skipped' | 'requires-manual-action';
+export type ExitDisposition = 'success' | 'repaired-with-warnings' | 'unresolved-failures';
+/**
+ * A single diagnostic finding produced by the doctor command.
+ * Extends the internal CheckResult with structured fix metadata.
+ */
+export interface DiagnosticFinding {
+    id: string;
+    category: DiagnosticCategory;
+    name: string;
+    status: 'pass' | 'warn' | 'fail';
+    message: string;
+    details?: string[];
+    fixEligibility: FixEligibility;
+    remediationKey?: string;
+    recheckScope: RecheckScope;
+}
+/**
+ * A remediation action registered for a specific finding.
+ */
+export interface RemediationAction {
+    key: string;
+    findingId: string;
+    safetyClass: SafetyClass;
+    executionKind: ExecutionKind;
+    preconditions: string[];
+    plannedChanges: string[];
+    manualFallback: string[];
+}
+/**
+ * Result of executing a single remediation action.
+ */
+export interface FixExecution {
+    findingId: string;
+    remediationKey: string;
+    attempted: boolean;
+    outcome: FixOutcome;
+    reason: string;
+    commands?: string[];
+    changedFiles?: string[];
+    backupPath?: string;
+    rechecked: boolean;
+}
+/**
+ * Aggregated outcome counts for a fix run.
+ */
+export interface FixOutcomeSummary {
+    fixed: number;
+    alreadyCompliant: number;
+    skipped: number;
+    requiresManualAction: number;
+    total: number;
+}
+/**
+ * Complete record of a doctor --fix execution.
+ */
+export interface FixRun {
+    outputPath: string;
+    requestedJson: boolean;
+    initialFindings: DiagnosticFinding[];
+    executions: FixExecution[];
+    finalFindings: DiagnosticFinding[];
+    summary: FixOutcomeSummary;
+    exitDisposition: ExitDisposition;
+}
 export interface ProjectConfigSelection {
     stack?: Stack;
     baseImage?: BaseImage;
@@ -294,12 +373,7 @@ export interface ProjectConfigSelection {
     containerName?: string;
     preset?: string;
     presetChoices?: Record<string, string>;
-    language?: LanguageOverlay[];
-    database?: DatabaseOverlay[];
-    observability?: ObservabilityTool[];
-    cloudTools?: CloudTool[];
-    devTools?: DevTool[];
-    playwright?: boolean;
+    overlays?: OverlayId[];
     outputPath?: string;
     portOffset?: number;
     target?: DeploymentTarget;

package/dist/tool/schema/types.d.ts.map

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package/dist/tool/utils/merge.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"merge.d.ts","sourceRoot":"","sources":["../../../tool/utils/merge.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,SAAS,CAAC,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,GAAG,GAAG,CA6BvD;AAiDD;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AACH,wBAAgB,cAAc,CAC1B,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EAC9B,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAC/B,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAyBxB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAS1E;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,eAAe,CAAC,SAAS,EAAE,OAAO,EAAE,gBAAgB,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,OAAO,CAgB1F;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,CAuBtF;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,oBAAoB,CAAC,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAe/E;AAED;;GAEG;AACH,eAAO,MAAM,cAAc;;;;;;;;;;;CAWjB,CAAC"}
+{"version":3,"file":"merge.d.ts","sourceRoot":"","sources":["../../../tool/utils/merge.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,SAAS,CAAC,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,GAAG,GAAG,CAuCvD;AAiDD;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AACH,wBAAgB,cAAc,CAC1B,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EAC9B,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAC/B,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAyBxB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAS1E;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,eAAe,CAAC,SAAS,EAAE,OAAO,EAAE,gBAAgB,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,OAAO,CAgB1F;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,CAuBtF;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,oBAAoB,CAAC,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAe/E;AAED;;GAEG;AACH,eAAO,MAAM,cAAc;;;;;;;;;;;CAWjB,CAAC"}

package/dist/tool/utils/merge.js

@@ -45,6 +45,15 @@ export function deepMerge(target, source) {
                 // Special handling for remoteEnv to merge PATH variables intelligently
                 output[key] = mergeRemoteEnv(target[key], source[key]);
             }
+            else if (key === 'postCreateCommand' ||
+                key === 'postStartCommand' ||
+                key === 'postAttachCommand') {
+                // Normalise string commands to objects before merging so that
+                // spreading a string ("npx ...") never produces { 0:'n', 1:'p', ... }
+                const t = typeof target[key] === 'string' ? { default: target[key] } : target[key];
+                const s = typeof source[key] === 'string' ? { default: source[key] } : source[key];
+                output[key] = deepMerge(t, s);
+            }
             else {
                 // Recursively merge objects
                 output[key] = deepMerge(target[key], source[key]);

package/dist/tool/utils/merge.js.map

@@ -1 +1 @@
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package/docs/adopt.md

@@ -5,8 +5,9 @@ The `adopt` command helps you **migrate an existing `.devcontainer/` configurati
 It scans your current `devcontainer.json` and any linked `docker-compose.yml` files, matches their contents against all available overlays, and produces:
 
 1. **`superposition.json`** — the manifest written to the **project root** (next to your `src/`, `package.json`, etc.), ready to commit and share with your team
-2. **`.devcontainer/custom/devcontainer.patch.json`** — any config that has no overlay equivalent (custom features, extensions, mounts, remoteEnv, etc.)
-3. **`.devcontainer/custom/docker-compose.patch.yml`** — any compose services that have no overlay equivalent
+2. **`.superposition.yml`** — an optional repository-root project file when you pass `--project-file`, using the same inferred stack, overlays, output path, and supported customizations
+3. **`.devcontainer/custom/devcontainer.patch.json`** — any config that has no overlay equivalent (custom features, extensions, mounts, remoteEnv, etc.)
+4. **`.devcontainer/custom/docker-compose.patch.yml`** — any compose services that have no overlay equivalent
 
 The custom patches in `custom/` are automatically merged on every `regen`, so your project-specific configuration is never lost.
 
@@ -19,6 +20,9 @@ npx container-superposition adopt --dry-run
 # Run the analysis and write the generated files
 npx container-superposition adopt
 
+# Also write a repository-root project file for project-config workflows
+npx container-superposition adopt --project-file
+
 # Force-overwrite any existing superposition.json / custom/ files
 npx container-superposition adopt --force
 ```
@@ -93,15 +97,16 @@ automatically added to `.gitignore`.
 
 ## Options
 
-| Option                | Description                                                                  |
-| --------------------- | ---------------------------------------------------------------------------- |
-| `-d, --dir <path>`    | Path to the existing `.devcontainer/` directory (default: `./.devcontainer`) |
-| `--dry-run`           | Print the analysis without writing any files                                 |
-| `--force`             | Overwrite existing `superposition.json` / `custom/` files                    |
-| `--backup`            | Force a backup even when inside a git repo                                   |
-| `--no-backup`         | Disable backup creation even when it would normally be performed             |
-| `--backup-dir <path>` | Custom backup directory location                                             |
-| `--json`              | Output analysis as JSON (useful for scripting)                               |
+| Option                | Description                                                                   |
+| --------------------- | ----------------------------------------------------------------------------- |
+| `-d, --dir <path>`    | Path to the existing `.devcontainer/` directory (default: `./.devcontainer`)  |
+| `--dry-run`           | Print the analysis without writing any files                                  |
+| `--force`             | Overwrite existing `superposition.json` / `custom/` files                     |
+| `--backup`            | Force a backup even when inside a git repo                                    |
+| `--no-backup`         | Disable backup creation even when it would normally be performed              |
+| `--backup-dir <path>` | Custom backup directory location                                              |
+| `--project-file`      | Also write a repository-root project config (`.superposition.yml` by default) |
+| `--json`              | Output analysis as JSON (useful for scripting)                                |
 
 ## Example Output
 
@@ -140,12 +145,13 @@ Suggested command:
 Once `adopt` has run:
 
 1. **Review `superposition.json`** — verify the detected overlays are correct; add or remove as needed.
-2. **Review `custom/` patches** — inspect what was preserved and trim anything no longer needed.
-3. **Regenerate** — rebuild your `.devcontainer/` from the manifest:
+2. **Review `.superposition.yml` if you generated one** — it captures the same inferred setup as a repository-root project file, including inline supported customizations.
+3. **Review `custom/` patches** — inspect what was preserved and trim anything no longer needed.
+4. **Regenerate** — rebuild your `.devcontainer/` from the manifest or project file:
     ```bash
     npx container-superposition regen
     ```
-4. **Commit `superposition.json`** and, if applicable, `custom/` patches.
+5. **Commit `superposition.json`**, the optional project file, and, if applicable, `custom/` patches.
 
 ## JSON Output
 

package/docs/creating-overlays.md

@@ -46,10 +46,24 @@ Overlays automatically detect the package manager based on the selected base ima
 - **Alpine**: Uses `apk` for package installation
 - **Custom**: Defaults to `apt-get` (may need manual adjustment)
 
-When creating overlays with package installations, use devcontainer features that handle this automatically, or detect the package manager in setup scripts:
+When creating overlays with package installations, prefer the `cross-distro-packages` devcontainer feature for packages available in standard distro repos — they run at build time and require no shell scripting:
+
+```json
+{
+    "features": {
+        "./features/cross-distro-packages": {
+            "apt": "direnv ripgrep fd-find",
+            "apk": "direnv ripgrep fd"
+        }
+    }
+}
+```
+
+For packages that require a custom apt repository or are not in standard repos, use a `setup.sh` script instead (see [Setup Scripts](#setup-scripts) below).
+
+If you do need to detect the package manager in a setup script:
 
 ```bash
-# Example: Detect package manager
 if command -v apk > /dev/null; then
     apk add --no-cache some-package
 elif command -v apt-get > /dev/null; then
@@ -252,6 +266,139 @@ volumes:
 
 These files are automatically copied to the output directory.
 
+## Setup Scripts
+
+If your overlay needs shell work at container-create time (e.g., adding a custom apt repo, downloading a binary, or configuring shell hooks), add a `setup.sh` to your overlay directory.
+
+```
+overlays/my-overlay/
+├── devcontainer.patch.json
+└── setup.sh                # postCreateCommand script
+```
+
+The composer copies `setup.sh` to `scripts/setup-my-overlay.sh` and wires it into `postCreateCommand` automatically. All setup scripts for all selected overlays **run in parallel**, so you must use the shared locking utilities for any apt/dpkg operations.
+
+### Using setup-utils.sh
+
+A shared utility library is automatically emitted to `scripts/setup-utils.sh` whenever any overlay contributes a setup script. Source it at the top of your `setup.sh`:
+
+```bash
+#!/bin/bash
+set -e
+source "$(dirname "${BASH_SOURCE[0]}")/setup-utils.sh"
+```
+
+#### APT locking — `apt_install` / `with_apt_lock` / `acquire_apt_lock`
+
+Setup scripts run in parallel. Without coordination, two scripts calling `apt-get update` simultaneously will corrupt the apt database.
+
+For the common case of installing packages, use `apt_install` — it acquires the lock, runs `apt-get update`, installs, then releases the lock:
+
+```bash
+apt_install my-package another-package
+```
+
+For operations that need the lock but aren't a plain `apt-get install` (e.g. `dpkg -i`), use `with_apt_lock`:
+
+```bash
+with_apt_lock sudo dpkg -i /tmp/package.deb
+```
+
+For multi-step sequences (add repo, then install), use `acquire_apt_lock` / `release_apt_lock` directly:
+
+```bash
+add_apt_repo ...
+acquire_apt_lock
+sudo apt-get update -qq
+sudo apt-get install -y my-package
+sudo apt-get clean && sudo rm -rf /var/lib/apt/lists/*
+release_apt_lock
+```
+
+The lock is `flock`-based and crash-safe: the kernel releases it automatically if the process exits for any reason.
+
+#### Adding a custom apt repo — `add_apt_repo`
+
+```bash
+add_apt_repo \
+    "https://example.com/repo.gpg" \
+    "/usr/share/keyrings/example.gpg" \
+    "deb [signed-by=/usr/share/keyrings/example.gpg] https://repo.example.com stable main" \
+    "/etc/apt/sources.list.d/example.list"
+```
+
+This handles the `curl → gpg --dearmor → tee sources.list.d` sequence, including `mkdir -p` for the keyring and sources directories. Call it **before** `acquire_apt_lock` — it only writes key/sources files and does not invoke apt.
+
+#### Architecture detection — `detect_arch`
+
+```bash
+detect_arch             # returns 1 on unknown arch
+detect_arch amd64       # falls back to amd64 on unknown arch
+# $CS_ARCH is now "amd64" or "arm64"
+```
+
+#### Installing a binary — `install_binary` / `install_binary_from_tar`
+
+```bash
+# Single binary
+install_binary "https://example.com/tool-linux-${CS_ARCH}" "tool"
+
+# Binary inside a .tar.gz
+install_binary_from_tar \
+    "https://example.com/tool-${VERSION}-linux-${CS_ARCH}.tar.gz" \
+    "tool"          # name inside archive
+```
+
+### Full example — custom apt repo
+
+```bash
+#!/bin/bash
+# my-tool setup script
+set -e
+
+source "$(dirname "${BASH_SOURCE[0]}")/setup-utils.sh"
+
+echo "📦 Installing my-tool..."
+add_apt_repo \
+    "https://my-tool.example.com/gpg.key" \
+    "/usr/share/keyrings/my-tool.gpg" \
+    "deb [signed-by=/usr/share/keyrings/my-tool.gpg] https://my-tool.example.com/apt stable main" \
+    "/etc/apt/sources.list.d/my-tool.list"
+
+apt_install my-tool
+
+echo "✅ my-tool installed: $(my-tool --version)"
+```
+
+### Full example — binary download
+
+```bash
+#!/bin/bash
+# my-cli setup script
+set -e
+
+source "$(dirname "${BASH_SOURCE[0]}")/setup-utils.sh"
+
+MY_VERSION="${MY_VERSION:-1.2.3}"
+detect_arch
+echo "📦 Installing my-cli ${MY_VERSION} for ${CS_ARCH}..."
+install_binary \
+    "https://github.com/example/my-cli/releases/download/v${MY_VERSION}/my-cli-linux-${CS_ARCH}" \
+    "my-cli"
+
+echo "✅ my-cli installed: $(my-cli --version)"
+```
+
+### Checklist for setup scripts
+
+- Source `setup-utils.sh` at the top
+- Use `acquire_apt_lock` / `release_apt_lock` around **all** apt/dpkg calls
+- Use `detect_arch` instead of a hand-rolled `uname -m` case statement
+- Use `install_binary` / `install_binary_from_tar` instead of `curl | tar | mv`
+- Use `add_apt_repo` instead of inline `curl | gpg | tee`
+- Never hardcode architecture (`x86_64`, `amd64`) or checksums that will go stale
+- Verify the installed tool with `command -v` after installation
+
 ## .env.example
 
 Define environment variables for your overlay.
@@ -537,6 +684,8 @@ CLI tools without services:
 Before submitting an overlay:
 
 - [ ] devcontainer.patch.json validates against schema
+- [ ] Packages available in standard repos use `cross-distro-packages` feature (not `apt-get install` in setup.sh)
+- [ ] `setup.sh` (if present) sources `setup-utils.sh` and uses `apt_install`/`install_binary`/`detect_arch`
 - [ ] docker-compose.yml uses version "3.8" and devnet network
 - [ ] .env.example has sensible defaults and comments
 - [ ] README.md documents ports, environment variables, usage