col-browser 2.6.0 → 2.6.2

package/es/taxonDistribution.js

@@ -4,7 +4,7 @@ import { useState as a, useEffect as D } from "react";
 import { s as T, c as s, R as g, b as k } from "./chunks/router-CssZk5qZ.js";
 import { c as l } from "./chunks/config--bs_09I6.js";
 import { Row as v, Col as w, Spin as A } from "antd";
-import { D as C } from "./chunks/Distributions-Czffme5Y.js";
+import { D as C } from "./chunks/Distributions-Byhvu1wv.js";
 const E = ({
   taxonId: o,
   datasetKey: i,

package/es/tree.js

@@ -11,8 +11,7 @@ import { L as P, c as K, R as H, s as ut, b as pt } from "./chunks/router-CssZk5
 import { c as D } from "./chunks/config--bs_09I6.js";
 import L from "dataloader";
 import { c as V, b as z, g as ft } from "./chunks/dataset-BZpjo3Yq.js";
-import { M as xt } from "./chunks/MergedDataBadge-DK53L3R8.js";
-import { E as gt } from "./chunks/ErrorMsg-K8k5PPTp.js";
+import { M as xt, E as gt } from "./chunks/ErrorMsg-D5nALHuK.js";
 import { g as yt } from "./chunks/sector-ucUgPp75.js";
 import { C as R, N as mt } from "./chunks/DatasetCitation-Cep2dces.js";
 import { r as F, w as M } from "./chunks/storage-BgdCo9fV.js";
@@ -830,8 +829,8 @@ function St({
     }
   ) });
 }
-const Rt = st(et(St));
+const Ot = st(et(St));
 export {
-  Rt as Tree
+  Ot as Tree
 };
 //# sourceMappingURL=tree.js.map

package/es/tree.js.map

@@ -1 +1 @@
-{"version":3,"file":"tree.js","sources":["../src/ColTree/treeCache.js","../src/ColTree/TaxonSources.js","../src/ColTree/ColTreeContext.js","../src/ColTree/ColTreeNode.js","../src/ColTree/ColTree.js","../src/ColTree/index.js","../src/entries/tree.js"],"sourcesContent":["import { createContext } from \"react\";\nimport DataLoader from \"dataloader\";\nimport { getDatasetsBatch, getPublishersBatch } from \"../api/dataset\";\n\n// Shared DataLoaders for the Tree subtree. Created once per (datasetKey,\n// mounted Tree) and provided via TreeCacheContext so every TaxonSources,\n// every sector-dataset decoration in ColTree, and any other in-tree\n// consumer hits the same in-memory cache. Without this, each TaxonSources\n// instance creates its own loader and the same source/publisher dataset\n// is fetched once per node it appears under.\n//\n// DataLoader batches calls inside a microtask and caches resolved values\n// indefinitely for the lifetime of the loader.\n\nexport const TreeCacheContext = createContext({\n  datasetLoader: null,\n  publisherLoader: null,\n});\n\nexport const createTreeCache = (datasetKey) => ({\n  datasetLoader: new DataLoader((ids) => getDatasetsBatch(ids, datasetKey)),\n  publisherLoader: new DataLoader((ids) =>\n    getPublishersBatch(ids, datasetKey)\n  ),\n});\n","import React from \"react\";\nimport { Popover, Spin, Divider } from \"antd\";\nimport DataLoader from \"dataloader\";\nimport { sortBy } from \"lodash-es\";\nimport { LinkTo } from \"../router\";\nimport { TreeCacheContext } from \"./treeCache\";\nimport { getDatasetsBatch, getPublishersBatch } from \"../api/dataset\";\nimport config from \"../config\";\n\nclass TaxonSources extends React.Component {\n  static contextType = TreeCacheContext;\n\n  constructor(props) {\n    super(props);\n    this.state = {\n      data: [],\n      showInNode: false,\n      loading: false,\n    };\n  }\n\n  // Returns the shared cache from TreeCacheContext if available, or a\n  // throwaway local DataLoader so the popover still works even if context\n  // doesn't reach this instance (which used to leave the spinner stuck\n  // because getData early-returned with no loading state set).\n  getDatasetLoader = () => {\n    const { datasetKey } = this.props;\n    if (this.context?.datasetLoader) return this.context.datasetLoader;\n    if (!this._localDatasetLoader) {\n      this._localDatasetLoader = new DataLoader((ids) =>\n        getDatasetsBatch(ids, datasetKey)\n      );\n    }\n    return this._localDatasetLoader;\n  };\n\n  getPublisherLoader = () => {\n    const { datasetKey } = this.props;\n    if (this.context?.publisherLoader) return this.context.publisherLoader;\n    if (!this._localPublisherLoader) {\n      this._localPublisherLoader = new DataLoader((ids) =>\n        getPublishersBatch(ids, datasetKey)\n      );\n    }\n    return this._localPublisherLoader;\n  };\n\n  componentDidMount = () => {\n    const { sourceDatasetKeys } = this.props;\n    if (sourceDatasetKeys && sourceDatasetKeys.length < 4) {\n      this.setState({ showInNode: true }, this.getData);\n    }\n  };\n\n  getData = () => {\n    const { sourceDatasetKeys } = this.props;\n    if (!sourceDatasetKeys?.length) return;\n    this.setState({ loading: true });\n    const loader = this.getDatasetLoader();\n    Promise.all(\n      sourceDatasetKeys.map((s) => loader.load(s).catch(() => null))\n    )\n      .then((data) => {\n        this.setState({ data: sortBy(data, [\"alias\"]), loading: false });\n      })\n      .catch(() => {\n        this.setState({ data: [], loading: false });\n      });\n  };\n\n  getPublisherData = () => {\n    const { publisherDatasetKeys } = this.props;\n    if (!publisherDatasetKeys) return;\n    const loader = this.getPublisherLoader();\n    Promise.all(\n      Object.keys(publisherDatasetKeys).map((s) =>\n        loader\n          .load(s)\n          .then((publisher) => ({\n            ...publisher,\n            datasets: publisherDatasetKeys[s],\n          }))\n          .catch(() => null)\n      )\n    )\n      .then((data) => {\n        this.setState({ publishers: sortBy(data.filter(Boolean), [\"alias\"]) });\n      })\n      .catch(() => {\n        this.setState({ publishers: [] });\n      });\n  };\n\n  render = () => {\n    const { data, showInNode, popOverVisible, loading } = this.state;\n    const { taxon, datasetKey } = this.props;\n    const linkStyle = { color: \"orange\", fontSize: \"11px\" };\n    const publisherUrl = (uuid) =>\n      `${config.clbPortal}/dataset/${datasetKey}/publisher/${uuid}`;\n\n    if (showInNode) {\n      return data\n        .filter((d) => !!d)\n        .map((d, index) => (\n          <LinkTo\n            to=\"source\"\n            args={d.key}\n            key={d.key}\n            className=\"col-tree-data-source\"\n            style={linkStyle}\n          >\n            {(index ? \", \" : \"\") + (d.alias || d.key)}\n          </LinkTo>\n        ));\n    }\n\n    return (\n      <div style={{ display: \"inline\" }} id={`taxon_sources_${taxon.id}`}>\n        <Popover\n          getPopupContainer={() =>\n            document.getElementById(`taxon_sources_${taxon.id}`)\n          }\n          content={\n            loading || data.length === 0 ? (\n              <div\n                style={{ minWidth: \"200px\", textAlign: \"center\", padding: \"8px 0\" }}\n              >\n                <Spin size=\"small\" />\n              </div>\n            ) : (\n              <div style={{ maxWidth: \"500px\" }}>\n                {data.length > 0 && (\n                  <div>\n                    {data\n                      .filter((d) => !!d)\n                      .map((d, index) => (\n                        <LinkTo\n                          to=\"source\"\n                          args={d.key}\n                          key={d.key}\n                          className=\"col-tree-data-source\"\n                          style={linkStyle}\n                        >\n                          {(index ? \", \" : \"\") + (d.alias || d.key)}\n                        </LinkTo>\n                      ))}\n                  </div>\n                )}\n                {this.state.publishers && this.state.publishers.length > 0 && (\n                  <div style={{ marginTop: \"12px\" }}>\n                    <strong>Publishers</strong>\n                    <div>\n                      {this.state.publishers\n                        .filter((d) => !!d)\n                        .map((d, index) => (\n                          <a\n                            key={d.id}\n                            href={publisherUrl(d.id)}\n                            target=\"_blank\"\n                            rel=\"noopener noreferrer\"\n                            style={linkStyle}\n                          >\n                            {(index ? \", \" : \"\") + (d.alias || d.id)}\n                            {d.datasets?.length\n                              ? ` (${d.datasets.length.toLocaleString(\"en-GB\")})`\n                              : \"\"}\n                          </a>\n                        ))}\n                    </div>\n                  </div>\n                )}\n              </div>\n            )\n          }\n          title={\n            <div style={{ padding: \"4px 0\" }}>\n              <span style={{ fontWeight: 500 }}>Sources for </span>\n              <em>{taxon?.name}</em>\n              <Divider style={{ margin: \"8px 0 0\" }} />\n            </div>\n          }\n          open={popOverVisible}\n          onOpenChange={(visible) =>\n            this.setState({ popOverVisible: visible }, () => {\n              if (visible && this.state.data.length === 0) this.getData();\n              if (\n                visible &&\n                this.props.publisherDatasetKeys &&\n                !this.state.publishers\n              ) {\n                this.getPublisherData();\n              }\n            })\n          }\n          trigger=\"click\"\n          placement=\"rightTop\"\n        >\n          <a\n            className=\"col-tree-data-source\"\n            role=\"button\"\n            tabIndex={0}\n            style={{ cursor: \"pointer\", color: \"orange\", fontSize: \"11px\" }}\n            onClick={(e) => e.preventDefault()}\n          >\n            Multiple sources\n          </a>\n        </Popover>\n      </div>\n    );\n  };\n}\n\nexport default TaxonSources;\n","import React from \"react\";\n\nexport const ColTreeContext = React.createContext();\n","import React from \"react\";\nimport { Tag } from \"antd\";\nimport { get, isUndefined } from \"lodash-es\";\nimport TaxonSources from \"./TaxonSources\";\nimport MergedDataBadge from \"../components/MergedDataBadge\";\nimport {ColTreeContext} from \"./ColTreeContext\"\nimport { LinkTo } from \"../router\";\n\nclass ColTreeNode extends React.Component {\n  constructor(props) {\n    super(props);\n    this.state = {\n      style: {},\n      provisional: this.props.taxon.status === \"provisionally accepted\",\n      loading: false,\n    };\n  }\n\n  rankIsAboveSpecies = (rank) => {\n    return this.props.rank.indexOf(rank) < this.props.rank.indexOf(\"species\");\n  };\n\n  render = () => {\n    const {\n      taxon,\n      taxon: { sector, sourceDatasetKeys, publisherDatasetKeys },\n      datasetKey,\n    } = this.props;\n\n    const sectorSourceDataset = get(sector, \"dataset\");\n/*     const hasDatasetSectors = datasetSectors && ( sector && sector.subjectDatasetKey ? Object.keys(omit(datasetSectors, [sector.subjectDatasetKey])).length > 0 : true)\n */    \nconst hasDatasetSectors =\n(sourceDatasetKeys || []).filter((d) => sector?.subjectDatasetKey !== d)\n  .length > 0;\n    const estimate = taxon.estimate && taxon.estimates ? taxon.estimates.find(e => e.estimate === taxon.estimate) : null;\n    // Virtual \"Not assigned\" placeholders inserted by the API\n    // (insertPlaceholder=true) aren't real taxa, so they can't be linked\n    // to a taxon page.\n    const isPlaceholder =\n      typeof taxon.id === \"string\" && taxon.id.indexOf(\"incertae-sedis\") > -1;\n\n    return (\n      <ColTreeContext.Consumer>\n                {({ showInfo }) => (\n                        <div id={taxon.id}>\n                        <span>\n                          <span className=\"tree-node-rank\">{taxon.rank}: </span>\n                          {isPlaceholder ? (\n                            <span dangerouslySetInnerHTML={{ __html: taxon.labelHtml }} />\n                          ) : (\n                            <LinkTo to=\"taxon\" args={taxon.id}>\n                              <span dangerouslySetInnerHTML={{ __html: taxon.labelHtml }} />\n                            </LinkTo>\n                          )}\n                          {taxon?.merged && (\n                          <MergedDataBadge style={{ marginLeft: \"4px\" }} datasetKey={taxon?.datasetKey} verbatimSourceKey={taxon?.verbatimSourceKey}/>\n                        )}\n                        </span>\n                        {/* estimate && (\n                          <span>\n                            {\" \"}\n                            • <TaxonEstimate estimate={estimate} taxon={taxon} />\n                          </span>\n                        ) */}\n                        {showInfo && taxon.status === \"provisionally accepted\" && (\n                          <React.Fragment> • <Tag color=\"warning\" style={{marginRight: 0}}>\n                            prov.\n                          </Tag>\n                          </React.Fragment>\n                        )}\n\n                      {!isUndefined(taxon.count) &&\n                        this.rankIsAboveSpecies(taxon?.rank) && (\n                          <span>\n                            {\" \"}\n                            • {Number(taxon.count).toLocaleString()}{\" \"}\n                            {showInfo && !isUndefined(taxon.speciesEstimate) && (\n                              <span>\n                                {\" \"}\n                                of{\" \"}\n                                {Number(\n                                  taxon.speciesEstimate\n                                ).toLocaleString()}{\" \"}\n                                est.{\" \"}\n                              </span>\n                            )}\n                            spp.\n                          </span>\n                        )}  \n                \n                        \n                        {showInfo && sector && (\n                          <span>\n                            <span> • </span>\n                            <LinkTo\n                              to=\"source\"\n                              args={sector.subjectDatasetKey}\n                              style={hasDatasetSectors ? {fontWeight: 'bold'} : null}\n                              className=\"col-tree-data-source\"\n                            >\n                              {get(sectorSourceDataset, \"alias\") || sector.subjectDatasetKey}{hasDatasetSectors && \", \"}\n                            </LinkTo>\n                          </span>\n                        )}\n                        {showInfo && hasDatasetSectors && (\n                          <React.Fragment> <TaxonSources\n                              sourceDatasetKeys={sourceDatasetKeys}\n                              publisherDatasetKeys={publisherDatasetKeys}\n                              taxon={taxon}\n                              datasetKey={datasetKey}\n                            />\n                          </React.Fragment>\n                        )}\n                        \n                      </div>\n                )}\n              </ColTreeContext.Consumer>\n\n    );\n  };\n}\n\nexport default ColTreeNode;\n","import React from \"react\";\nimport { Tree, Alert, Spin, Button, Skeleton } from \"antd\";\nimport { flatten, get, isArray } from \"lodash-es\";\nimport client from \"../api/client\";\nimport config from \"../config\";\nimport ColTreeNode from \"./ColTreeNode\";\nimport ErrorMsg from \"../components/ErrorMsg\";\nimport { getSectorsBatch } from \"../api/sector\";\nimport DataLoader from \"dataloader\";\nimport { TreeCacheContext } from \"./treeCache\";\n\nconst CHILD_PAGE_SIZE = 1000; // How many children will we load at a time\n\n// Key of the synthetic \"Load more...\" child node. It has to be scoped to its\n// parent: two nodes that both have more children than one page would otherwise\n// share one key and antd warns \"Same 'key' exist in the Tree\" (issue #59).\nconst LOAD_MORE_PREFIX = \"__loadMoreBTN__\";\nconst loadMoreKey = (parentKey) => `${LOAD_MORE_PREFIX}${parentKey}`;\nconst isLoadMoreKey = (key) =>\n  typeof key === \"string\" && key.startsWith(LOAD_MORE_PREFIX);\n\nclass LoadMoreChildrenTreeNode extends React.Component {\n  constructor(props) {\n    super(props);\n    this.state = { loading: false };\n  }\n\n  onClick = () => {\n    this.setState({ loading: true }, () =>\n      this.props.onClick().then(() => this.setState({ loading: false }))\n    );\n  };\n  render = () => {\n    const { loading } = this.state;\n    return (\n      <React.Fragment>\n        {loading && <Spin />}\n        {!loading && (\n          <a onClick={this.onClick}>\n            <strong>Load more...</strong>\n          </a>\n        )}\n      </React.Fragment>\n    );\n  };\n}\n\nclass ColTree extends React.Component {\n  static contextType = TreeCacheContext;\n\n  constructor(props) {\n    super(props);\n\n    this.state = {\n      rootLoading: true,\n      treeData: [],\n      loadedKeys: [],\n      expandedKeys: [],\n      rootTotal: 0,\n      error: null,\n      nodeNotFoundErr: null,\n      rank: []\n    };\n    this.treeRef = React.createRef();\n    // Incremented on every root load; a response whose id is no longer the\n    // current one is stale and gets discarded (see loadRoot).\n    this.rootRequestId = 0;\n  }\n\n  // datasetLoader comes from the shared TreeCacheContext so multiple tree\n  // nodes (and TaxonSources instances) share one in-memory cache instead\n  // of each re-fetching the same source datasets.\n  get datasetLoader() {\n    return this.context.datasetLoader;\n  }\n\n  componentDidMount = () => {\n    const { datasetKey } = this.props;\n    this.loadRoot();\n    this.sectorLoader = new DataLoader((ids) =>\n      getSectorsBatch(ids, datasetKey)\n    );\n    this.getRank()\n    const { treeRef } = this.props;\n    treeRef(this);\n  };\n\n  componentDidUpdate = (prevProps) => {\n    if (\n      prevProps.defaultExpandKey !== this.props.defaultExpandKey ||\n      prevProps.hideExtinct !== this.props.hideExtinct ||\n      prevProps.insertPlaceholder !== this.props.insertPlaceholder\n    ) {\n      this.reloadRoot();\n    }\n  };\n\n  getRank = () => {\n    client(`${config.dataApi}vocab/rank`).then((res) =>\n      this.setState({ rank: res.data.map((r) => r.name) })\n    );\n  };\n\n  reloadRoot = () =>\n    this.setState(\n      {\n        rootLoading: true,\n        treeData: [],\n        loadedKeys: [],\n        rootTotal: 0,\n        error: null,\n        nodeNotFoundErr: null,\n      },\n      this.loadRoot\n    );\n\n \n\n  // `append` is only set by the \"Load more\" button, which pages in the next\n  // batch of root taxa; every other caller loads page one from scratch.\n  // Each call takes a request id and a response is merged only while its id is\n  // still the current one. Without that, two overlapping loads — React\n  // StrictMode's double mount in dev, or a prop change while a load is in\n  // flight — both merged their page into treeData, so every root appeared\n  // twice and antd warned \"Same 'key' exist in the Tree\" (issue #59).\n  loadRoot = async (append = false) => {\n    const {\n      showSourceTaxon,\n      datasetKey,\n      hideExtinct,\n      insertPlaceholder,\n      type,\n      expandedTaxonKey,\n    } = this.props;\n\n    const defaultExpandKey = expandedTaxonKey;\n    const { defaultTaxonKey } = this.props;\n\n    const requestId = ++this.rootRequestId;\n    const offset = append ? this.state.treeData.length : 0;\n\n    this.setState(\n      append ? { rootLoading: true } : { rootLoading: true, treeData: [] }\n    );\n    return client(\n      `${\n        config.dataApi\n      }dataset/${datasetKey}/tree?projectKey=${datasetKey}${type ? \"&type=\"+type :\"\"}&limit=${CHILD_PAGE_SIZE}&offset=${offset}${hideExtinct ? `&extinct=false&extinct=` : \"\"}${insertPlaceholder ? \"&insertPlaceholder=true\" : \"\"}`\n    )\n      .then(this.decorateWithSectorsAndDataset)\n      .then((res) => {\n        // A newer load has started since — drop this page instead of merging it.\n        if (requestId !== this.rootRequestId) return;\n        const mainTreeData = res.data.result || [];\n        const rootTotal = res.data.total;\n        const treeData = mainTreeData.map((tx) => {\n          let dataRef = {\n            taxon: tx,\n            key: tx.id,\n            datasetKey,\n            childCount: tx.childCount,\n            isLeaf: tx.childCount === 0,\n            childOffset: 0,\n          };\n          dataRef.title = (\n            <ColTreeNode\n              taxon={tx}\n              \n              \n              datasetKey={datasetKey}\n              showSourceTaxon={showSourceTaxon}\n              reloadChildren={() => this.fetchChildPage(dataRef, true)}\n              rank={this.state.rank}\n            />\n          );\n          dataRef.ref = dataRef;\n          return dataRef;\n        });\n\n        this.setState((prevState) => ({\n          rootTotal: rootTotal,\n          rootLoading: false,\n          treeData: append ? [...prevState.treeData, ...treeData] : treeData,\n          // Nothing is auto-expanded by default. Consumers open a specific root\n          // (or deep taxon) by passing `defaultTaxonKey`/`expandedTaxonKey` —\n          // e.g. defaultTaxonKey=\"CS5HF\" opens Eukaryota in current COL releases.\n          expandedKeys: [],\n          error: null,\n        }),\n          () => {\n            if (defaultExpandKey) {\n              return this.expandToTaxon(defaultExpandKey);\n            } else if (defaultTaxonKey) {\n              return this.expandToTaxon(defaultTaxonKey);\n            }\n          });\n        if (treeData.length === 1) {\n          this.fetchChildPage(treeData[treeData.length - 1]);\n        }\n      })\n      .catch((err) => {\n        if (requestId !== this.rootRequestId) return;\n        this.setState({\n          treeData: [],\n          rootLoading: false,\n          expandedKeys: [],\n          error: err,\n        });\n      });\n  };\n\n  expandToTaxon = async (defaultExpandKey) => {\n    const {\n      showSourceTaxon,\n      datasetKey,\n      hideExtinct,\n      type\n    } = this.props;\n\n    this.setState({ rootLoading: true/* , treeData: [] */ });\n    const { data } = await client(\n      `${\n        config.dataApi\n      }dataset/${datasetKey}/tree/${defaultExpandKey}?projectKey=${datasetKey}&insertPlaceholder=true${type ? \"&type=\"+type :\"\"}${\n        hideExtinct ? `&extinct=false` : \"\"\n      }`\n    ).then((res) =>\n      this.decorateWithSectorsAndDataset({\n        data: { result: res.data },\n      }).then(() => res)\n    );\n\n    if (data.length === 0) {\n      return this.setState(\n        {\n          error: {\n            message: `No classification found for Taxon ID: ${defaultExpandKey}`,\n          },\n        },\n        this.loadRoot\n      );\n    }\n    const tx = data[data.length - 1];\n    let root = {\n      taxon: tx,\n      key: tx.id,\n      datasetKey,\n      childCount: tx.childCount,\n      isLeaf: tx.childCount === 0,\n      childOffset: 0,\n    };\n    root.title = (\n      <ColTreeNode\n        taxon={tx}\n        \n        \n        datasetKey={datasetKey}\n        showSourceTaxon={showSourceTaxon}\n        rank={this.state.rank}\n        reloadChildren={() => this.fetchChildPage(root, true)}\n      />\n    );\n\n     root.ref = root;\n    const root_ = root;\n    for (let i = data.length - 2; i >= 0; i--) {\n      const tx = data[i];\n      const node = {\n        taxon: tx,\n        key: tx.id,\n        datasetKey,\n        childCount: tx.childCount,\n        isLeaf: tx.childCount === 0,\n        childOffset: 0,\n      };\n      node.ref = node;\n      node.title = (\n        <ColTreeNode\n          taxon={tx}\n          \n          \n          datasetKey={datasetKey}\n          showSourceTaxon={showSourceTaxon}\n          rank={this.state.rank}\n          reloadChildren={() => this.fetchChildPage(node, true)}\n        />\n      );\n\n      root.children = [node];\n      root = node;\n    }\n\n    /* const treeData = [root_]; */\nconst { treeData } = this.state;\n    var rootIndex = treeData.findIndex((x) => x.key == root_.key);\n    treeData[rootIndex] = root_;\n    const loadedKeys = [...data.map((t) => t.id).reverse()];\n\n    this.setState({ treeData }, () =>\n      this.reloadLoadedKeys(loadedKeys, defaultExpandKey)\n    );\n  };\n\n  fetchChildPage = async (dataRef, reloadAll, dontUpdateState) => {\n    const {\n      showSourceTaxon,\n      datasetKey,\n      hideExtinct,\n      insertPlaceholder,\n      type\n    } = this.props;\n    const childcount = get(dataRef, \"childCount\");\n    const limit = CHILD_PAGE_SIZE;\n    const offset = get(dataRef, \"childOffset\");\n    const res = await client(\n      `${config.dataApi}dataset/${datasetKey}/tree/${\n        dataRef.taxon.id //taxonKey\n      }/children?limit=${limit}&offset=${offset}&projectKey=${datasetKey}${type ? \"&type=\"+type :\"\"}${\n        hideExtinct ? `&extinct=false` : \"\"\n      }${insertPlaceholder ? \"&insertPlaceholder=true\" : \"\"}`\n    );\n    await this.decorateWithSectorsAndDataset(res);\n\n    const data = res.data.result\n      ? res.data.result.map((tx) => {\n          let childDataRef = {\n            taxon: tx,\n            key: tx.id,\n            datasetKey,\n            childCount: tx.childCount,\n            isLeaf: tx.childCount === 0,\n            childOffset: 0,\n            parent: dataRef,\n            name: tx.name,\n          };\n\n          childDataRef.title = (\n            <ColTreeNode\n              taxon={tx}\n              \n              \n              datasetKey={datasetKey}\n              showSourceTaxon={showSourceTaxon}\n              rank={this.state.rank}\n              reloadChildren={() => this.fetchChildPage(childDataRef, true)}\n            />\n          );\n          childDataRef.ref = childDataRef;\n\n          return childDataRef;\n        })\n      : [];\n\n    // reloadAll is used to force reload all children from offset 0 - used when new children have been posted\n    dataRef.children =\n      dataRef.children && offset !== 0 && !reloadAll\n        ? [...dataRef.children, ...data]\n        : data;\n    // If extinct are filtered out, you cannot rely on childCount\n    if (res.data.last && dataRef.childCount > dataRef.children.length) {\n      dataRef.childCount = dataRef.children.length;\n    }\n    if (!res.data.last) {\n      const loadMoreFn = () => {\n        dataRef.childOffset += CHILD_PAGE_SIZE;\n        if (isLoadMoreKey(get(dataRef.children[dataRef.children.length - 1], \"key\"))) {\n          dataRef.children = dataRef.children.slice(0, -1);\n        }\n        return this.fetchChildPage(dataRef, false);\n      };\n      dataRef.children = [\n        ...dataRef.children,\n        {\n          title: (\n            <LoadMoreChildrenTreeNode\n              onClick={loadMoreFn}\n              key={loadMoreKey(dataRef.key)}\n            />\n          ),\n          key: loadMoreKey(dataRef.key),\n          childCount: 0,\n          isLeaf: true,\n        },\n      ];\n    }\n    if (!dontUpdateState) {\n      // Use the updater form: this often runs right after a sibling setState\n      // (e.g. loadRoot's auto-expand of a single root) that may not have\n      // committed yet, so this.state can be stale here.\n      this.setState((prevState) => ({\n        treeData: [...prevState.treeData],\n        loadedKeys: [...new Set([...prevState.loadedKeys, dataRef.key])],\n      }));\n    }\n  };\n\n  decorateWithSectorsAndDataset = (res) => {\n    if (!res.data.result) return res;\n    return Promise.all(\n      res.data.result\n        .filter((tx) => !!tx.sectorDatasetKey)\n        .map((tx) =>\n          this.datasetLoader\n            .load(tx.sectorDatasetKey)\n            .then(\n              (dataset) =>\n                (tx.sector = {\n                  id: tx.sectorKey,\n                  subjectDatasetKey: tx.sectorDatasetKey,\n                  dataset: dataset,\n                })\n            )\n        )\n    ).then(() => res);\n  };\n\n  onLoadData = (treeNode, reloadAll = false) => {\n    if (reloadAll) {\n      treeNode.childOffset = 0;\n    }\n    return this.fetchChildPage(treeNode.ref, reloadAll);\n  };\n\n  findNode = (id, nodeArray) => {\n    let node = null;\n\n    node = nodeArray.find((n) => get(n, \"taxon.id\") === id);\n\n    if (node) {\n      return node;\n    } else {\n      const children = nodeArray.map((n) => get(n, \"children\") || []);\n      const flattenedChildren = flatten(children); //.flat();\n      if (flattenedChildren.length === 0) {\n        return null;\n      } else {\n        return this.findNode(id, flattenedChildren);\n      }\n    }\n  };\n\n  pageThroughChildrenUntilTaxonFound = async (parentNode, taxonId) => {\n    let node;\n    while (!node && parentNode.children.length < parentNode.childCount) {\n      parentNode.childOffset += CHILD_PAGE_SIZE;\n      if (isLoadMoreKey(get(parentNode.children[parentNode.children.length - 1], \"key\"))) {\n        parentNode.children = parentNode.children.slice(0, -1);\n      }\n      await this.fetchChildPage(parentNode, false, true);\n      node = this.findNode(taxonId, parentNode.children);\n    }\n    if (!node) {\n      node = parentNode.children.find((c) =>\n        get(c, \"taxon.id\") ? c.taxon.id.indexOf(\"incertae-sedis\") > -1 : false\n      );\n    }\n    return node;\n  };\n\n  reloadLoadedKeys = async (keys, expandKey, expandAll = true) => {\n    this.setState({ rootLoading: true });\n    const { loadedKeys: storedKeys } = this.state;\n    // const defaultExpandKey = get(qs.parse(get(location, \"search\")), 'taxonKey');\n\n    let { treeData } = this.state;\n    const targetTaxon = expandKey ? this.findNode(expandKey, treeData) : null;\n    const loadedKeys = keys ? [...keys] : [...storedKeys];\n    for (let index = 0; index < loadedKeys.length; index++) {\n      let node = this.findNode(loadedKeys[index], treeData);\n      if (!node && targetTaxon && loadedKeys[index - 1]) {\n        // If the node is not found look for insertae sedis nodes in the children of the parent and insert the 'Not assigned' between the parent and the node\n        const parentNode = this.findNode(loadedKeys[index - 1], treeData);\n        if (\n          parentNode &&\n          isArray(get(parentNode, \"children\")) &&\n          parentNode.children.length > 0\n        ) {\n          node = await this.pageThroughChildrenUntilTaxonFound(\n            parentNode,\n            loadedKeys[index]\n          );\n          if (node) {\n            loadedKeys.splice(index, 0, node.taxon.id);\n          } else {\n            // It has gone missing from the tree\n            this.setState(\n              {\n                nodeNotFoundErr: (\n                  <span>Cannot find taxon {expandKey} in tree &#128549;</span>\n                ),\n                rootLoading: false,\n              }/* ,\n              () => {\n                if (\n                  this.props.treeType === \"CATALOGUE\" &&\n                  typeof this.props.addMissingTargetKey === \"function\"\n                ) {\n                  this.props.addMissingTargetKey(expandKey);\n                }\n              } */\n            );\n          }\n        }\n      }\n      if (node) {\n        await this.fetchChildPage(node, true, true);\n        let targetNode = node.children.find(\n          (c) => get(c, \"taxon.id\") === get(targetTaxon, \"taxon.id\")\n        );\n        if (\n          targetTaxon &&\n          index === loadedKeys.length - 2 &&\n          get(node, \"taxon.id\") !== get(targetTaxon, \"taxon.id\") &&\n          isArray(node.children) &&\n          !targetNode\n        ) {\n          if (node.children.length < node.childCount) {\n            // its the parent of the taxon we are after - if its not in the first page, insert it\n            targetNode = await this.pageThroughChildrenUntilTaxonFound(\n              node,\n              get(targetTaxon, \"taxon.id\")\n            );\n            // node.children = [targetTaxon, ...node.children];\n            if (targetNode) {\n              this.setState({ treeData: [...this.state.treeData] }, () => {\n                setTimeout(() => {\n                  const elmnt = document.getElementById(expandKey);\n                  elmnt.scrollIntoView({ behavior: \"smooth\", block: \"center\" });\n                  /* if (get(this, \"treeRef.current\")) {\n                    this.treeRef.current.scrollTo({ key: expandKey });\n                  } */\n                }, 100);\n              });\n            } else {\n              // It has gone missing from the tree\n              this.setState(\n                {\n                  nodeNotFoundErr: (\n                    <span>Cannot find taxon {expandKey} in tree &#128549;</span>\n                  ),\n                  rootLoading: false,\n                },\n                () => {\n                  if (\n                    this.props.treeType === \"CATALOGUE\" &&\n                    typeof this.props.addMissingTargetKey === \"function\"\n                  ) {\n                    this.props.addMissingTargetKey(expandKey);\n                  }\n                }\n              );\n            }\n          }\n        }\n      }\n    }\n    const newState = { loadedKeys, rootLoading: false };\n    if (expandAll) {\n      newState.expandedKeys = loadedKeys;\n    }\n    this.setState(newState, () => {\n      if (expandKey) {\n        setTimeout(() => {\n          const elmnt = document.getElementById(expandKey);\n          elmnt.scrollIntoView({ behavior: \"smooth\", block: \"center\" });\n          /*           if (get(this, \"treeRef.current\")) {\n            this.treeRef.current.scrollTo({ key: expandKey });\n          } */\n        }, 100);\n      }\n    });\n  };\n\n  render() {\n    const {\n      error,\n      rootTotal,\n      rootLoading,\n      treeData,\n      defaultExpandAll,\n      nodeNotFoundErr,\n      loadedKeys,\n      expandedKeys,\n    } = this.state;\n    const { treeType, dataset, height, expandedTaxonKey } = this.props;\n    void height;\n    const defaultExpandKey = expandedTaxonKey;\n\n    return (\n      <div>\n        {error && (\n          <React.Fragment>\n            {get(error, \"response.data.code\") !== 404 ? (\n              <Alert\n                closable\n                onClose={() => this.setState({ error: null })}\n                style={{ marginTop: \"8px\" }}\n                message={<ErrorMsg error={error} />}\n                type=\"error\"\n              />\n            ) : (\n              <Alert\n                closable\n                onClose={() => this.setState({ error: null })}\n                style={{ marginTop: \"8px\" }}\n                message={\n                  <Custom404\n                    error={error}\n                    treeType={treeType}\n                    dataset={dataset}\n                    loadRoot={this.loadRoot}\n                  />\n                }\n                type=\"warning\"\n              />\n            )}\n          </React.Fragment>\n        )}\n        {nodeNotFoundErr && (\n          <Alert\n            closable\n            onClose={() => this.setState({ nodeNotFoundErr: null })}\n            style={{ marginTop: \"8px\" }}\n            message={nodeNotFoundErr}\n            type=\"warning\"\n          />\n        )}\n        {rootLoading && <Skeleton paragraph={{ rows: 10 }} active />}\n        {!rootLoading && treeData.length > 0 && (\n          <Tree\n            ref={this.treeRef}\n            defaultExpandAll={defaultExpandAll}\n            // height={height || 600}\n            // defaultExpandedKeys={defaultExpandedKeys}\n            loadData={this.onLoadData}\n            onLoad={(loadedKeys) => this.setState({ loadedKeys })}\n            loadedKeys={loadedKeys}\n            expandedKeys={expandedKeys}\n            treeData={treeData}\n            filterTreeNode={(node) => node.key === defaultExpandKey}\n            onExpand={(expandedKeys, obj) => {\n              this.setState({ expandedKeys });\n              if (this.props.onExpandedTaxonKeyChange) {\n                this.props.onExpandedTaxonKeyChange(\n                  obj.expanded ? obj.node.key : null\n                );\n              }\n            }}\n          ></Tree>\n        )}\n\n        {!error && treeData.length < rootTotal && (\n          <Button loading={rootLoading} onClick={() => this.loadRoot(true)}>\n            Load more{\" \"}\n          </Button>\n        )}\n      </div>\n    );\n  }\n}\n\nexport default ColTree;\n","import React from \"react\";\nimport ColTree from \"./ColTree\";\nimport { get } from \"lodash-es\";\nimport NameAutocomplete from \"./NameAutocomplete\";\nimport client, { setAuth } from \"../api/client\";\nimport { Row, Col, Checkbox } from \"antd\";\nimport { ColTreeContext } from \"./ColTreeContext\";\nimport { TreeCacheContext, createTreeCache } from \"./treeCache\";\nimport { getDataset } from \"../api/dataset\";\nimport Citation from \"../components/DatasetCitation\";\nimport { RouterContext, buildRouter } from \"../router\";\nimport { readSetting, writeSetting } from \"../storage\";\n\nconst INFRASPECIFIC_RANKS = [\n  \"infraspecific name\",\n  \"species\",\n  \"variety\",\n  \"form\",\n];\n\nclass ColTreeWrapper extends React.Component {\n  static contextType = RouterContext;\n\n  constructor(props) {\n    super(props);\n    setAuth(this.props.auth);\n    this.state = {\n      hideExtinct: readSetting(\"tree-extant-only\", false),\n      showInfo: readSetting(\"tree-show-source\", false),\n      dataset: null,\n    };\n    // Per-Tree DataLoader cache. Rebuilt only if datasetKey changes (rare).\n    this.cache = createTreeCache(this.props.datasetKey);\n  }\n\n  componentDidUpdate(prevProps) {\n    if (prevProps.datasetKey !== this.props.datasetKey) {\n      this.cache = createTreeCache(this.props.datasetKey);\n    }\n  }\n\n  componentDidMount = async () => {\n    const { datasetKey, citation } = this.props;\n    if (citation) {\n      try {\n        const { data: dataset } = await getDataset(datasetKey);\n        this.setState({ dataset });\n      } catch (err) {\n        // ignore\n      }\n    }\n  };\n\n  render = () => {\n    const {\n      datasetKey,\n      defaultTaxonKey,\n      expandedTaxonKey,\n      onExpandedTaxonKeyChange,\n      showTreeOptions,\n      linkToSpeciesPage,\n      citation,\n      type,\n      insertPlaceholder = true,\n    } = this.props;\n    const { hideExtinct, dataset } = this.state;\n\n    const handleSelectName = (name) => {\n      const key = get(name, \"key\");\n      if (!key) return;\n      const rank = get(name, \"rank\");\n      if (linkToSpeciesPage && INFRASPECIFIC_RANKS.includes(rank)) {\n        // Leaf-like selection: jump to the taxon page via the host's nav.\n        const navigateToTaxon = this.context?.taxon?.onNavigate;\n        if (navigateToTaxon) navigateToTaxon(key);\n      } else if (onExpandedTaxonKeyChange) {\n        onExpandedTaxonKeyChange(key);\n        if (this.treeRef && this.treeRef.reloadRoot) this.treeRef.reloadRoot();\n      }\n    };\n\n    const handleResetSearch = () => {\n      if (onExpandedTaxonKeyChange) onExpandedTaxonKeyChange(null);\n    };\n\n    return (\n      <div className=\"catalogue-of-life\">\n        {citation === \"top\" && dataset && <Citation dataset={dataset} />}\n        <TreeCacheContext.Provider value={this.cache}>\n        <ColTreeContext.Provider value={this.state}>\n          <Row>\n            <Col flex=\"auto\">\n              <NameAutocomplete\n                hideExtinct={hideExtinct}\n                datasetKey={datasetKey}\n                style={{\n                  width: \"100%\",\n                  paddingTop: \"5px\",\n                  paddingBottom: \"5px\",\n                }}\n                defaultTaxonKey={expandedTaxonKey || null}\n                onSelectName={handleSelectName}\n                onResetSearch={handleResetSearch}\n              />\n            </Col>\n            {showTreeOptions && (\n              <Col style={{ paddingLeft: \"8px\" }}>\n                <Checkbox\n                  defaultChecked={this.state.showInfo}\n                  onChange={({ target: { checked } }) => {\n                    this.setState({ showInfo: checked });\n                    writeSetting(\"tree-show-source\", checked);\n                  }}\n                >\n                  Source\n                </Checkbox>\n\n                <Checkbox\n                  defaultChecked={this.state.hideExtinct}\n                  onChange={({ target: { checked } }) => {\n                    this.setState({ hideExtinct: checked });\n                    writeSetting(\"tree-extant-only\", checked);\n                  }}\n                >\n                  Extant only\n                </Checkbox>\n              </Col>\n            )}\n          </Row>\n          <ColTree\n            insertPlaceholder={insertPlaceholder}\n            hideExtinct={hideExtinct}\n            datasetKey={datasetKey}\n            defaultTaxonKey={defaultTaxonKey}\n            expandedTaxonKey={expandedTaxonKey}\n            onExpandedTaxonKeyChange={onExpandedTaxonKeyChange}\n            treeRef={(ref) => (this.treeRef = ref)}\n            type={type}\n          />\n        </ColTreeContext.Provider>\n        </TreeCacheContext.Provider>\n        {citation === \"bottom\" && dataset && <Citation dataset={dataset} />}\n      </div>\n    );\n  };\n}\n\n// Public wrapper: takes controlled props + navigation callbacks, builds\n// the RouterContext, hands the rest down.\nexport default function Tree({\n  datasetKey,\n  defaultTaxonKey,\n  expandedTaxonKey,\n  onExpandedTaxonKeyChange,\n  showTreeOptions,\n  linkToSpeciesPage,\n  citation,\n  type,\n  insertPlaceholder,\n  auth,\n  ...routerProps\n}) {\n  return (\n    <RouterContext.Provider value={buildRouter(routerProps)}>\n      <ColTreeWrapper\n        datasetKey={datasetKey}\n        defaultTaxonKey={defaultTaxonKey}\n        expandedTaxonKey={expandedTaxonKey}\n        onExpandedTaxonKeyChange={onExpandedTaxonKeyChange}\n        showTreeOptions={showTreeOptions}\n        linkToSpeciesPage={linkToSpeciesPage}\n        citation={citation}\n        type={type}\n        insertPlaceholder={insertPlaceholder}\n        auth={auth}\n      />\n    </RouterContext.Provider>\n  );\n}\n","import withDatasetKey from \"../withDatasetKey\";\nimport { withTheme } from \"../withTheme\";\nimport colTree from \"../ColTree\";\n\nexport const Tree = 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+{"version":3,"file":"tree.js","sources":["../src/ColTree/treeCache.js","../src/ColTree/TaxonSources.js","../src/ColTree/ColTreeContext.js","../src/ColTree/ColTreeNode.js","../src/ColTree/ColTree.js","../src/ColTree/index.js","../src/entries/tree.js"],"sourcesContent":["import { createContext } from \"react\";\nimport DataLoader from \"dataloader\";\nimport { getDatasetsBatch, getPublishersBatch } from \"../api/dataset\";\n\n// Shared DataLoaders for the Tree subtree. Created once per (datasetKey,\n// mounted Tree) and provided via TreeCacheContext so every TaxonSources,\n// every sector-dataset decoration in ColTree, and any other in-tree\n// consumer hits the same in-memory cache. Without this, each TaxonSources\n// instance creates its own loader and the same source/publisher dataset\n// is fetched once per node it appears under.\n//\n// DataLoader batches calls inside a microtask and caches resolved values\n// indefinitely for the lifetime of the loader.\n\nexport const TreeCacheContext = createContext({\n  datasetLoader: null,\n  publisherLoader: null,\n});\n\nexport const createTreeCache = (datasetKey) => ({\n  datasetLoader: new DataLoader((ids) => getDatasetsBatch(ids, datasetKey)),\n  publisherLoader: new DataLoader((ids) =>\n    getPublishersBatch(ids, datasetKey)\n  ),\n});\n","import React from \"react\";\nimport { Popover, Spin, Divider } from \"antd\";\nimport DataLoader from \"dataloader\";\nimport { sortBy } from \"lodash-es\";\nimport { LinkTo } from \"../router\";\nimport { TreeCacheContext } from \"./treeCache\";\nimport { getDatasetsBatch, getPublishersBatch } from \"../api/dataset\";\nimport config from \"../config\";\n\nclass TaxonSources extends React.Component {\n  static contextType = TreeCacheContext;\n\n  constructor(props) {\n    super(props);\n    this.state = {\n      data: [],\n      showInNode: false,\n      loading: false,\n    };\n  }\n\n  // Returns the shared cache from TreeCacheContext if available, or a\n  // throwaway local DataLoader so the popover still works even if context\n  // doesn't reach this instance (which used to leave the spinner stuck\n  // because getData early-returned with no loading state set).\n  getDatasetLoader = () => {\n    const { datasetKey } = this.props;\n    if (this.context?.datasetLoader) return this.context.datasetLoader;\n    if (!this._localDatasetLoader) {\n      this._localDatasetLoader = new DataLoader((ids) =>\n        getDatasetsBatch(ids, datasetKey)\n      );\n    }\n    return this._localDatasetLoader;\n  };\n\n  getPublisherLoader = () => {\n    const { datasetKey } = this.props;\n    if (this.context?.publisherLoader) return this.context.publisherLoader;\n    if (!this._localPublisherLoader) {\n      this._localPublisherLoader = new DataLoader((ids) =>\n        getPublishersBatch(ids, datasetKey)\n      );\n    }\n    return this._localPublisherLoader;\n  };\n\n  componentDidMount = () => {\n    const { sourceDatasetKeys } = this.props;\n    if (sourceDatasetKeys && sourceDatasetKeys.length < 4) {\n      this.setState({ showInNode: true }, this.getData);\n    }\n  };\n\n  getData = () => {\n    const { sourceDatasetKeys } = this.props;\n    if (!sourceDatasetKeys?.length) return;\n    this.setState({ loading: true });\n    const loader = this.getDatasetLoader();\n    Promise.all(\n      sourceDatasetKeys.map((s) => loader.load(s).catch(() => null))\n    )\n      .then((data) => {\n        this.setState({ data: sortBy(data, [\"alias\"]), loading: false });\n      })\n      .catch(() => {\n        this.setState({ data: [], loading: false });\n      });\n  };\n\n  getPublisherData = () => {\n    const { publisherDatasetKeys } = this.props;\n    if (!publisherDatasetKeys) return;\n    const loader = this.getPublisherLoader();\n    Promise.all(\n      Object.keys(publisherDatasetKeys).map((s) =>\n        loader\n          .load(s)\n          .then((publisher) => ({\n            ...publisher,\n            datasets: publisherDatasetKeys[s],\n          }))\n          .catch(() => null)\n      )\n    )\n      .then((data) => {\n        this.setState({ publishers: sortBy(data.filter(Boolean), [\"alias\"]) });\n      })\n      .catch(() => {\n        this.setState({ publishers: [] });\n      });\n  };\n\n  render = () => {\n    const { data, showInNode, popOverVisible, loading } = this.state;\n    const { taxon, datasetKey } = this.props;\n    const linkStyle = { color: \"orange\", fontSize: \"11px\" };\n    const publisherUrl = (uuid) =>\n      `${config.clbPortal}/dataset/${datasetKey}/publisher/${uuid}`;\n\n    if (showInNode) {\n      return data\n        .filter((d) => !!d)\n        .map((d, index) => (\n          <LinkTo\n            to=\"source\"\n            args={d.key}\n            key={d.key}\n            className=\"col-tree-data-source\"\n            style={linkStyle}\n          >\n            {(index ? \", \" : \"\") + (d.alias || d.key)}\n          </LinkTo>\n        ));\n    }\n\n    return (\n      <div style={{ display: \"inline\" }} id={`taxon_sources_${taxon.id}`}>\n        <Popover\n          getPopupContainer={() =>\n            document.getElementById(`taxon_sources_${taxon.id}`)\n          }\n          content={\n            loading || data.length === 0 ? (\n              <div\n                style={{ minWidth: \"200px\", textAlign: \"center\", padding: \"8px 0\" }}\n              >\n                <Spin size=\"small\" />\n              </div>\n            ) : (\n              <div style={{ maxWidth: \"500px\" }}>\n                {data.length > 0 && (\n                  <div>\n                    {data\n                      .filter((d) => !!d)\n                      .map((d, index) => (\n                        <LinkTo\n                          to=\"source\"\n                          args={d.key}\n                          key={d.key}\n                          className=\"col-tree-data-source\"\n                          style={linkStyle}\n                        >\n                          {(index ? \", \" : \"\") + (d.alias || d.key)}\n                        </LinkTo>\n                      ))}\n                  </div>\n                )}\n                {this.state.publishers && this.state.publishers.length > 0 && (\n                  <div style={{ marginTop: \"12px\" }}>\n                    <strong>Publishers</strong>\n                    <div>\n                      {this.state.publishers\n                        .filter((d) => !!d)\n                        .map((d, index) => (\n                          <a\n                            key={d.id}\n                            href={publisherUrl(d.id)}\n                            target=\"_blank\"\n                            rel=\"noopener noreferrer\"\n                            style={linkStyle}\n                          >\n                            {(index ? \", \" : \"\") + (d.alias || d.id)}\n                            {d.datasets?.length\n                              ? ` (${d.datasets.length.toLocaleString(\"en-GB\")})`\n                              : \"\"}\n                          </a>\n                        ))}\n                    </div>\n                  </div>\n                )}\n              </div>\n            )\n          }\n          title={\n            <div style={{ padding: \"4px 0\" }}>\n              <span style={{ fontWeight: 500 }}>Sources for </span>\n              <em>{taxon?.name}</em>\n              <Divider style={{ margin: \"8px 0 0\" }} />\n            </div>\n          }\n          open={popOverVisible}\n          onOpenChange={(visible) =>\n            this.setState({ popOverVisible: visible }, () => {\n              if (visible && this.state.data.length === 0) this.getData();\n              if (\n                visible &&\n                this.props.publisherDatasetKeys &&\n                !this.state.publishers\n              ) {\n                this.getPublisherData();\n              }\n            })\n          }\n          trigger=\"click\"\n          placement=\"rightTop\"\n        >\n          <a\n            className=\"col-tree-data-source\"\n            role=\"button\"\n            tabIndex={0}\n            style={{ cursor: \"pointer\", color: \"orange\", fontSize: \"11px\" }}\n            onClick={(e) => e.preventDefault()}\n          >\n            Multiple sources\n          </a>\n        </Popover>\n      </div>\n    );\n  };\n}\n\nexport default TaxonSources;\n","import React from \"react\";\n\nexport const ColTreeContext = React.createContext();\n","import React from \"react\";\nimport { Tag } from \"antd\";\nimport { get, isUndefined } from \"lodash-es\";\nimport TaxonSources from \"./TaxonSources\";\nimport MergedDataBadge from \"../components/MergedDataBadge\";\nimport {ColTreeContext} from \"./ColTreeContext\"\nimport { LinkTo } from \"../router\";\n\nclass ColTreeNode extends React.Component {\n  constructor(props) {\n    super(props);\n    this.state = {\n      style: {},\n      provisional: this.props.taxon.status === \"provisionally accepted\",\n      loading: false,\n    };\n  }\n\n  rankIsAboveSpecies = (rank) => {\n    return this.props.rank.indexOf(rank) < this.props.rank.indexOf(\"species\");\n  };\n\n  render = () => {\n    const {\n      taxon,\n      taxon: { sector, sourceDatasetKeys, publisherDatasetKeys },\n      datasetKey,\n    } = this.props;\n\n    const sectorSourceDataset = get(sector, \"dataset\");\n/*     const hasDatasetSectors = datasetSectors && ( sector && sector.subjectDatasetKey ? Object.keys(omit(datasetSectors, [sector.subjectDatasetKey])).length > 0 : true)\n */    \nconst hasDatasetSectors =\n(sourceDatasetKeys || []).filter((d) => sector?.subjectDatasetKey !== d)\n  .length > 0;\n    const estimate = taxon.estimate && taxon.estimates ? taxon.estimates.find(e => e.estimate === taxon.estimate) : null;\n    // Virtual \"Not assigned\" placeholders inserted by the API\n    // (insertPlaceholder=true) aren't real taxa, so they can't be linked\n    // to a taxon page.\n    const isPlaceholder =\n      typeof taxon.id === \"string\" && taxon.id.indexOf(\"incertae-sedis\") > -1;\n\n    return (\n      <ColTreeContext.Consumer>\n                {({ showInfo }) => (\n                        <div id={taxon.id}>\n                        <span>\n                          <span className=\"tree-node-rank\">{taxon.rank}: </span>\n                          {isPlaceholder ? (\n                            <span dangerouslySetInnerHTML={{ __html: taxon.labelHtml }} />\n                          ) : (\n                            <LinkTo to=\"taxon\" args={taxon.id}>\n                              <span dangerouslySetInnerHTML={{ __html: taxon.labelHtml }} />\n                            </LinkTo>\n                          )}\n                          {taxon?.merged && (\n                          <MergedDataBadge style={{ marginLeft: \"4px\" }} datasetKey={taxon?.datasetKey} verbatimSourceKey={taxon?.verbatimSourceKey}/>\n                        )}\n                        </span>\n                        {/* estimate && (\n                          <span>\n                            {\" \"}\n                            • <TaxonEstimate estimate={estimate} taxon={taxon} />\n                          </span>\n                        ) */}\n                        {showInfo && taxon.status === \"provisionally accepted\" && (\n                          <React.Fragment> • <Tag color=\"warning\" style={{marginRight: 0}}>\n                            prov.\n                          </Tag>\n                          </React.Fragment>\n                        )}\n\n                      {!isUndefined(taxon.count) &&\n                        this.rankIsAboveSpecies(taxon?.rank) && (\n                          <span>\n                            {\" \"}\n                            • {Number(taxon.count).toLocaleString()}{\" \"}\n                            {showInfo && !isUndefined(taxon.speciesEstimate) && (\n                              <span>\n                                {\" \"}\n                                of{\" \"}\n                                {Number(\n                                  taxon.speciesEstimate\n                                ).toLocaleString()}{\" \"}\n                                est.{\" \"}\n                              </span>\n                            )}\n                            spp.\n                          </span>\n                        )}  \n                \n                        \n                        {showInfo && sector && (\n                          <span>\n                            <span> • </span>\n                            <LinkTo\n                              to=\"source\"\n                              args={sector.subjectDatasetKey}\n                              style={hasDatasetSectors ? {fontWeight: 'bold'} : null}\n                              className=\"col-tree-data-source\"\n                            >\n                              {get(sectorSourceDataset, \"alias\") || sector.subjectDatasetKey}{hasDatasetSectors && \", \"}\n                            </LinkTo>\n                          </span>\n                        )}\n                        {showInfo && hasDatasetSectors && (\n                          <React.Fragment> <TaxonSources\n                              sourceDatasetKeys={sourceDatasetKeys}\n                              publisherDatasetKeys={publisherDatasetKeys}\n                              taxon={taxon}\n                              datasetKey={datasetKey}\n                            />\n                          </React.Fragment>\n                        )}\n                        \n                      </div>\n                )}\n              </ColTreeContext.Consumer>\n\n    );\n  };\n}\n\nexport default ColTreeNode;\n","import React from \"react\";\nimport { Tree, Alert, Spin, Button, Skeleton } from \"antd\";\nimport { flatten, get, isArray } from \"lodash-es\";\nimport client from \"../api/client\";\nimport config from \"../config\";\nimport ColTreeNode from \"./ColTreeNode\";\nimport ErrorMsg from \"../components/ErrorMsg\";\nimport { getSectorsBatch } from \"../api/sector\";\nimport DataLoader from \"dataloader\";\nimport { TreeCacheContext } from \"./treeCache\";\n\nconst CHILD_PAGE_SIZE = 1000; // How many children will we load at a time\n\n// Key of the synthetic \"Load more...\" child node. It has to be scoped to its\n// parent: two nodes that both have more children than one page would otherwise\n// share one key and antd warns \"Same 'key' exist in the Tree\" (issue #59).\nconst LOAD_MORE_PREFIX = \"__loadMoreBTN__\";\nconst loadMoreKey = (parentKey) => `${LOAD_MORE_PREFIX}${parentKey}`;\nconst isLoadMoreKey = (key) =>\n  typeof key === \"string\" && key.startsWith(LOAD_MORE_PREFIX);\n\nclass LoadMoreChildrenTreeNode extends React.Component {\n  constructor(props) {\n    super(props);\n    this.state = { loading: false };\n  }\n\n  onClick = () => {\n    this.setState({ loading: true }, () =>\n      this.props.onClick().then(() => this.setState({ loading: false }))\n    );\n  };\n  render = () => {\n    const { loading } = this.state;\n    return (\n      <React.Fragment>\n        {loading && <Spin />}\n        {!loading && (\n          <a onClick={this.onClick}>\n            <strong>Load more...</strong>\n          </a>\n        )}\n      </React.Fragment>\n    );\n  };\n}\n\nclass ColTree extends React.Component {\n  static contextType = TreeCacheContext;\n\n  constructor(props) {\n    super(props);\n\n    this.state = {\n      rootLoading: true,\n      treeData: [],\n      loadedKeys: [],\n      expandedKeys: [],\n      rootTotal: 0,\n      error: null,\n      nodeNotFoundErr: null,\n      rank: []\n    };\n    this.treeRef = React.createRef();\n    // Incremented on every root load; a response whose id is no longer the\n    // current one is stale and gets discarded (see loadRoot).\n    this.rootRequestId = 0;\n  }\n\n  // datasetLoader comes from the shared TreeCacheContext so multiple tree\n  // nodes (and TaxonSources instances) share one in-memory cache instead\n  // of each re-fetching the same source datasets.\n  get datasetLoader() {\n    return this.context.datasetLoader;\n  }\n\n  componentDidMount = () => {\n    const { datasetKey } = this.props;\n    this.loadRoot();\n    this.sectorLoader = new DataLoader((ids) =>\n      getSectorsBatch(ids, datasetKey)\n    );\n    this.getRank()\n    const { treeRef } = this.props;\n    treeRef(this);\n  };\n\n  componentDidUpdate = (prevProps) => {\n    if (\n      prevProps.defaultExpandKey !== this.props.defaultExpandKey ||\n      prevProps.hideExtinct !== this.props.hideExtinct ||\n      prevProps.insertPlaceholder !== this.props.insertPlaceholder\n    ) {\n      this.reloadRoot();\n    }\n  };\n\n  getRank = () => {\n    client(`${config.dataApi}vocab/rank`).then((res) =>\n      this.setState({ rank: res.data.map((r) => r.name) })\n    );\n  };\n\n  reloadRoot = () =>\n    this.setState(\n      {\n        rootLoading: true,\n        treeData: [],\n        loadedKeys: [],\n        rootTotal: 0,\n        error: null,\n        nodeNotFoundErr: null,\n      },\n      this.loadRoot\n    );\n\n \n\n  // `append` is only set by the \"Load more\" button, which pages in the next\n  // batch of root taxa; every other caller loads page one from scratch.\n  // Each call takes a request id and a response is merged only while its id is\n  // still the current one. Without that, two overlapping loads — React\n  // StrictMode's double mount in dev, or a prop change while a load is in\n  // flight — both merged their page into treeData, so every root appeared\n  // twice and antd warned \"Same 'key' exist in the Tree\" (issue #59).\n  loadRoot = async (append = false) => {\n    const {\n      showSourceTaxon,\n      datasetKey,\n      hideExtinct,\n      insertPlaceholder,\n      type,\n      expandedTaxonKey,\n    } = this.props;\n\n    const defaultExpandKey = expandedTaxonKey;\n    const { defaultTaxonKey } = this.props;\n\n    const requestId = ++this.rootRequestId;\n    const offset = append ? this.state.treeData.length : 0;\n\n    this.setState(\n      append ? { rootLoading: true } : { rootLoading: true, treeData: [] }\n    );\n    return client(\n      `${\n        config.dataApi\n      }dataset/${datasetKey}/tree?projectKey=${datasetKey}${type ? \"&type=\"+type :\"\"}&limit=${CHILD_PAGE_SIZE}&offset=${offset}${hideExtinct ? `&extinct=false&extinct=` : \"\"}${insertPlaceholder ? \"&insertPlaceholder=true\" : \"\"}`\n    )\n      .then(this.decorateWithSectorsAndDataset)\n      .then((res) => {\n        // A newer load has started since — drop this page instead of merging it.\n        if (requestId !== this.rootRequestId) return;\n        const mainTreeData = res.data.result || [];\n        const rootTotal = res.data.total;\n        const treeData = mainTreeData.map((tx) => {\n          let dataRef = {\n            taxon: tx,\n            key: tx.id,\n            datasetKey,\n            childCount: tx.childCount,\n            isLeaf: tx.childCount === 0,\n            childOffset: 0,\n          };\n          dataRef.title = (\n            <ColTreeNode\n              taxon={tx}\n              \n              \n              datasetKey={datasetKey}\n              showSourceTaxon={showSourceTaxon}\n              reloadChildren={() => this.fetchChildPage(dataRef, true)}\n              rank={this.state.rank}\n            />\n          );\n          dataRef.ref = dataRef;\n          return dataRef;\n        });\n\n        this.setState((prevState) => ({\n          rootTotal: rootTotal,\n          rootLoading: false,\n          treeData: append ? [...prevState.treeData, ...treeData] : treeData,\n          // Nothing is auto-expanded by default. Consumers open a specific root\n          // (or deep taxon) by passing `defaultTaxonKey`/`expandedTaxonKey` —\n          // e.g. defaultTaxonKey=\"CS5HF\" opens Eukaryota in current COL releases.\n          expandedKeys: [],\n          error: null,\n        }),\n          () => {\n            if (defaultExpandKey) {\n              return this.expandToTaxon(defaultExpandKey);\n            } else if (defaultTaxonKey) {\n              return this.expandToTaxon(defaultTaxonKey);\n            }\n          });\n        if (treeData.length === 1) {\n          this.fetchChildPage(treeData[treeData.length - 1]);\n        }\n      })\n      .catch((err) => {\n        if (requestId !== this.rootRequestId) return;\n        this.setState({\n          treeData: [],\n          rootLoading: false,\n          expandedKeys: [],\n          error: err,\n        });\n      });\n  };\n\n  expandToTaxon = async (defaultExpandKey) => {\n    const {\n      showSourceTaxon,\n      datasetKey,\n      hideExtinct,\n      type\n    } = this.props;\n\n    this.setState({ rootLoading: true/* , treeData: [] */ });\n    const { data } = await client(\n      `${\n        config.dataApi\n      }dataset/${datasetKey}/tree/${defaultExpandKey}?projectKey=${datasetKey}&insertPlaceholder=true${type ? \"&type=\"+type :\"\"}${\n        hideExtinct ? `&extinct=false` : \"\"\n      }`\n    ).then((res) =>\n      this.decorateWithSectorsAndDataset({\n        data: { result: res.data },\n      }).then(() => res)\n    );\n\n    if (data.length === 0) {\n      return this.setState(\n        {\n          error: {\n            message: `No classification found for Taxon ID: ${defaultExpandKey}`,\n          },\n        },\n        this.loadRoot\n      );\n    }\n    const tx = data[data.length - 1];\n    let root = {\n      taxon: tx,\n      key: tx.id,\n      datasetKey,\n      childCount: tx.childCount,\n      isLeaf: tx.childCount === 0,\n      childOffset: 0,\n    };\n    root.title = (\n      <ColTreeNode\n        taxon={tx}\n        \n        \n        datasetKey={datasetKey}\n        showSourceTaxon={showSourceTaxon}\n        rank={this.state.rank}\n        reloadChildren={() => this.fetchChildPage(root, true)}\n      />\n    );\n\n     root.ref = root;\n    const root_ = root;\n    for (let i = data.length - 2; i >= 0; i--) {\n      const tx = data[i];\n      const node = {\n        taxon: tx,\n        key: tx.id,\n        datasetKey,\n        childCount: tx.childCount,\n        isLeaf: tx.childCount === 0,\n        childOffset: 0,\n      };\n      node.ref = node;\n      node.title = (\n        <ColTreeNode\n          taxon={tx}\n          \n          \n          datasetKey={datasetKey}\n          showSourceTaxon={showSourceTaxon}\n          rank={this.state.rank}\n          reloadChildren={() => this.fetchChildPage(node, true)}\n        />\n      );\n\n      root.children = [node];\n      root = node;\n    }\n\n    /* const treeData = [root_]; */\nconst { treeData } = this.state;\n    var rootIndex = treeData.findIndex((x) => x.key == root_.key);\n    treeData[rootIndex] = root_;\n    const loadedKeys = [...data.map((t) => t.id).reverse()];\n\n    this.setState({ treeData }, () =>\n      this.reloadLoadedKeys(loadedKeys, defaultExpandKey)\n    );\n  };\n\n  fetchChildPage = async (dataRef, reloadAll, dontUpdateState) => {\n    const {\n      showSourceTaxon,\n      datasetKey,\n      hideExtinct,\n      insertPlaceholder,\n      type\n    } = this.props;\n    const childcount = get(dataRef, \"childCount\");\n    const limit = CHILD_PAGE_SIZE;\n    const offset = get(dataRef, \"childOffset\");\n    const res = await client(\n      `${config.dataApi}dataset/${datasetKey}/tree/${\n        dataRef.taxon.id //taxonKey\n      }/children?limit=${limit}&offset=${offset}&projectKey=${datasetKey}${type ? \"&type=\"+type :\"\"}${\n        hideExtinct ? `&extinct=false` : \"\"\n      }${insertPlaceholder ? \"&insertPlaceholder=true\" : \"\"}`\n    );\n    await this.decorateWithSectorsAndDataset(res);\n\n    const data = res.data.result\n      ? res.data.result.map((tx) => {\n          let childDataRef = {\n            taxon: tx,\n            key: tx.id,\n            datasetKey,\n            childCount: tx.childCount,\n            isLeaf: tx.childCount === 0,\n            childOffset: 0,\n            parent: dataRef,\n            name: tx.name,\n          };\n\n          childDataRef.title = (\n            <ColTreeNode\n              taxon={tx}\n              \n              \n              datasetKey={datasetKey}\n              showSourceTaxon={showSourceTaxon}\n              rank={this.state.rank}\n              reloadChildren={() => this.fetchChildPage(childDataRef, true)}\n            />\n          );\n          childDataRef.ref = childDataRef;\n\n          return childDataRef;\n        })\n      : [];\n\n    // reloadAll is used to force reload all children from offset 0 - used when new children have been posted\n    dataRef.children =\n      dataRef.children && offset !== 0 && !reloadAll\n        ? [...dataRef.children, ...data]\n        : data;\n    // If extinct are filtered out, you cannot rely on childCount\n    if (res.data.last && dataRef.childCount > dataRef.children.length) {\n      dataRef.childCount = dataRef.children.length;\n    }\n    if (!res.data.last) {\n      const loadMoreFn = () => {\n        dataRef.childOffset += CHILD_PAGE_SIZE;\n        if (isLoadMoreKey(get(dataRef.children[dataRef.children.length - 1], \"key\"))) {\n          dataRef.children = dataRef.children.slice(0, -1);\n        }\n        return this.fetchChildPage(dataRef, false);\n      };\n      dataRef.children = [\n        ...dataRef.children,\n        {\n          title: (\n            <LoadMoreChildrenTreeNode\n              onClick={loadMoreFn}\n              key={loadMoreKey(dataRef.key)}\n            />\n          ),\n          key: loadMoreKey(dataRef.key),\n          childCount: 0,\n          isLeaf: true,\n        },\n      ];\n    }\n    if (!dontUpdateState) {\n      // Use the updater form: this often runs right after a sibling setState\n      // (e.g. loadRoot's auto-expand of a single root) that may not have\n      // committed yet, so this.state can be stale here.\n      this.setState((prevState) => ({\n        treeData: [...prevState.treeData],\n        loadedKeys: [...new Set([...prevState.loadedKeys, dataRef.key])],\n      }));\n    }\n  };\n\n  decorateWithSectorsAndDataset = (res) => {\n    if (!res.data.result) return res;\n    return Promise.all(\n      res.data.result\n        .filter((tx) => !!tx.sectorDatasetKey)\n        .map((tx) =>\n          this.datasetLoader\n            .load(tx.sectorDatasetKey)\n            .then(\n              (dataset) =>\n                (tx.sector = {\n                  id: tx.sectorKey,\n                  subjectDatasetKey: tx.sectorDatasetKey,\n                  dataset: dataset,\n                })\n            )\n        )\n    ).then(() => res);\n  };\n\n  onLoadData = (treeNode, reloadAll = false) => {\n    if (reloadAll) {\n      treeNode.childOffset = 0;\n    }\n    return this.fetchChildPage(treeNode.ref, reloadAll);\n  };\n\n  findNode = (id, nodeArray) => {\n    let node = null;\n\n    node = nodeArray.find((n) => get(n, \"taxon.id\") === id);\n\n    if (node) {\n      return node;\n    } else {\n      const children = nodeArray.map((n) => get(n, \"children\") || []);\n      const flattenedChildren = flatten(children); //.flat();\n      if (flattenedChildren.length === 0) {\n        return null;\n      } else {\n        return this.findNode(id, flattenedChildren);\n      }\n    }\n  };\n\n  pageThroughChildrenUntilTaxonFound = async (parentNode, taxonId) => {\n    let node;\n    while (!node && parentNode.children.length < parentNode.childCount) {\n      parentNode.childOffset += CHILD_PAGE_SIZE;\n      if (isLoadMoreKey(get(parentNode.children[parentNode.children.length - 1], \"key\"))) {\n        parentNode.children = parentNode.children.slice(0, -1);\n      }\n      await this.fetchChildPage(parentNode, false, true);\n      node = this.findNode(taxonId, parentNode.children);\n    }\n    if (!node) {\n      node = parentNode.children.find((c) =>\n        get(c, \"taxon.id\") ? c.taxon.id.indexOf(\"incertae-sedis\") > -1 : false\n      );\n    }\n    return node;\n  };\n\n  reloadLoadedKeys = async (keys, expandKey, expandAll = true) => {\n    this.setState({ rootLoading: true });\n    const { loadedKeys: storedKeys } = this.state;\n    // const defaultExpandKey = get(qs.parse(get(location, \"search\")), 'taxonKey');\n\n    let { treeData } = this.state;\n    const targetTaxon = expandKey ? this.findNode(expandKey, treeData) : null;\n    const loadedKeys = keys ? [...keys] : [...storedKeys];\n    for (let index = 0; index < loadedKeys.length; index++) {\n      let node = this.findNode(loadedKeys[index], treeData);\n      if (!node && targetTaxon && loadedKeys[index - 1]) {\n        // If the node is not found look for insertae sedis nodes in the children of the parent and insert the 'Not assigned' between the parent and the node\n        const parentNode = this.findNode(loadedKeys[index - 1], treeData);\n        if (\n          parentNode &&\n          isArray(get(parentNode, \"children\")) &&\n          parentNode.children.length > 0\n        ) {\n          node = await this.pageThroughChildrenUntilTaxonFound(\n            parentNode,\n            loadedKeys[index]\n          );\n          if (node) {\n            loadedKeys.splice(index, 0, node.taxon.id);\n          } else {\n            // It has gone missing from the tree\n            this.setState(\n              {\n                nodeNotFoundErr: (\n                  <span>Cannot find taxon {expandKey} in tree &#128549;</span>\n                ),\n                rootLoading: false,\n              }/* ,\n              () => {\n                if (\n                  this.props.treeType === \"CATALOGUE\" &&\n                  typeof this.props.addMissingTargetKey === \"function\"\n                ) {\n                  this.props.addMissingTargetKey(expandKey);\n                }\n              } */\n            );\n          }\n        }\n      }\n      if (node) {\n        await this.fetchChildPage(node, true, true);\n        let targetNode = node.children.find(\n          (c) => get(c, \"taxon.id\") === get(targetTaxon, \"taxon.id\")\n        );\n        if (\n          targetTaxon &&\n          index === loadedKeys.length - 2 &&\n          get(node, \"taxon.id\") !== get(targetTaxon, \"taxon.id\") &&\n          isArray(node.children) &&\n          !targetNode\n        ) {\n          if (node.children.length < node.childCount) {\n            // its the parent of the taxon we are after - if its not in the first page, insert it\n            targetNode = await this.pageThroughChildrenUntilTaxonFound(\n              node,\n              get(targetTaxon, \"taxon.id\")\n            );\n            // node.children = [targetTaxon, ...node.children];\n            if (targetNode) {\n              this.setState({ treeData: [...this.state.treeData] }, () => {\n                setTimeout(() => {\n                  const elmnt = document.getElementById(expandKey);\n                  elmnt.scrollIntoView({ behavior: \"smooth\", block: \"center\" });\n                  /* if (get(this, \"treeRef.current\")) {\n                    this.treeRef.current.scrollTo({ key: expandKey });\n                  } */\n                }, 100);\n              });\n            } else {\n              // It has gone missing from the tree\n              this.setState(\n                {\n                  nodeNotFoundErr: (\n                    <span>Cannot find taxon {expandKey} in tree &#128549;</span>\n                  ),\n                  rootLoading: false,\n                },\n                () => {\n                  if (\n                    this.props.treeType === \"CATALOGUE\" &&\n                    typeof this.props.addMissingTargetKey === \"function\"\n                  ) {\n                    this.props.addMissingTargetKey(expandKey);\n                  }\n                }\n              );\n            }\n          }\n        }\n      }\n    }\n    const newState = { loadedKeys, rootLoading: false };\n    if (expandAll) {\n      newState.expandedKeys = loadedKeys;\n    }\n    this.setState(newState, () => {\n      if (expandKey) {\n        setTimeout(() => {\n          const elmnt = document.getElementById(expandKey);\n          elmnt.scrollIntoView({ behavior: \"smooth\", block: \"center\" });\n          /*           if (get(this, \"treeRef.current\")) {\n            this.treeRef.current.scrollTo({ key: expandKey });\n          } */\n        }, 100);\n      }\n    });\n  };\n\n  render() {\n    const {\n      error,\n      rootTotal,\n      rootLoading,\n      treeData,\n      defaultExpandAll,\n      nodeNotFoundErr,\n      loadedKeys,\n      expandedKeys,\n    } = this.state;\n    const { treeType, dataset, height, expandedTaxonKey } = this.props;\n    void height;\n    const defaultExpandKey = expandedTaxonKey;\n\n    return (\n      <div>\n        {error && (\n          <React.Fragment>\n            {get(error, \"response.data.code\") !== 404 ? (\n              <Alert\n                closable\n                onClose={() => this.setState({ error: null })}\n                style={{ marginTop: \"8px\" }}\n                message={<ErrorMsg error={error} />}\n                type=\"error\"\n              />\n            ) : (\n              <Alert\n                closable\n                onClose={() => this.setState({ error: null })}\n                style={{ marginTop: \"8px\" }}\n                message={\n                  <Custom404\n                    error={error}\n                    treeType={treeType}\n                    dataset={dataset}\n                    loadRoot={this.loadRoot}\n                  />\n                }\n                type=\"warning\"\n              />\n            )}\n          </React.Fragment>\n        )}\n        {nodeNotFoundErr && (\n          <Alert\n            closable\n            onClose={() => this.setState({ nodeNotFoundErr: null })}\n            style={{ marginTop: \"8px\" }}\n            message={nodeNotFoundErr}\n            type=\"warning\"\n          />\n        )}\n        {rootLoading && <Skeleton paragraph={{ rows: 10 }} active />}\n        {!rootLoading && treeData.length > 0 && (\n          <Tree\n            ref={this.treeRef}\n            defaultExpandAll={defaultExpandAll}\n            // height={height || 600}\n            // defaultExpandedKeys={defaultExpandedKeys}\n            loadData={this.onLoadData}\n            onLoad={(loadedKeys) => this.setState({ loadedKeys })}\n            loadedKeys={loadedKeys}\n            expandedKeys={expandedKeys}\n            treeData={treeData}\n            filterTreeNode={(node) => node.key === defaultExpandKey}\n            onExpand={(expandedKeys, obj) => {\n              this.setState({ expandedKeys });\n              if (this.props.onExpandedTaxonKeyChange) {\n                this.props.onExpandedTaxonKeyChange(\n                  obj.expanded ? obj.node.key : null\n                );\n              }\n            }}\n          ></Tree>\n        )}\n\n        {!error && treeData.length < rootTotal && (\n          <Button loading={rootLoading} onClick={() => this.loadRoot(true)}>\n            Load more{\" \"}\n          </Button>\n        )}\n      </div>\n    );\n  }\n}\n\nexport default ColTree;\n","import React from \"react\";\nimport ColTree from \"./ColTree\";\nimport { get } from \"lodash-es\";\nimport NameAutocomplete from \"./NameAutocomplete\";\nimport client, { setAuth } from \"../api/client\";\nimport { Row, Col, Checkbox } from \"antd\";\nimport { ColTreeContext } from \"./ColTreeContext\";\nimport { TreeCacheContext, createTreeCache } from \"./treeCache\";\nimport { getDataset } from \"../api/dataset\";\nimport Citation from \"../components/DatasetCitation\";\nimport { RouterContext, buildRouter } from \"../router\";\nimport { readSetting, writeSetting } from \"../storage\";\n\nconst INFRASPECIFIC_RANKS = [\n  \"infraspecific name\",\n  \"species\",\n  \"variety\",\n  \"form\",\n];\n\nclass ColTreeWrapper extends React.Component {\n  static contextType = RouterContext;\n\n  constructor(props) {\n    super(props);\n    setAuth(this.props.auth);\n    this.state = {\n      hideExtinct: readSetting(\"tree-extant-only\", false),\n      showInfo: readSetting(\"tree-show-source\", false),\n      dataset: null,\n    };\n    // Per-Tree DataLoader cache. Rebuilt only if datasetKey changes (rare).\n    this.cache = createTreeCache(this.props.datasetKey);\n  }\n\n  componentDidUpdate(prevProps) {\n    if (prevProps.datasetKey !== this.props.datasetKey) {\n      this.cache = createTreeCache(this.props.datasetKey);\n    }\n  }\n\n  componentDidMount = async () => {\n    const { datasetKey, citation } = this.props;\n    if (citation) {\n      try {\n        const { data: dataset } = await getDataset(datasetKey);\n        this.setState({ dataset });\n      } catch (err) {\n        // ignore\n      }\n    }\n  };\n\n  render = () => {\n    const {\n      datasetKey,\n      defaultTaxonKey,\n      expandedTaxonKey,\n      onExpandedTaxonKeyChange,\n      showTreeOptions,\n      linkToSpeciesPage,\n      citation,\n      type,\n      insertPlaceholder = true,\n    } = this.props;\n    const { hideExtinct, dataset } = this.state;\n\n    const handleSelectName = (name) => {\n      const key = get(name, \"key\");\n      if (!key) return;\n      const rank = get(name, \"rank\");\n      if (linkToSpeciesPage && INFRASPECIFIC_RANKS.includes(rank)) {\n        // Leaf-like selection: jump to the taxon page via the host's nav.\n        const navigateToTaxon = this.context?.taxon?.onNavigate;\n        if (navigateToTaxon) navigateToTaxon(key);\n      } else if (onExpandedTaxonKeyChange) {\n        onExpandedTaxonKeyChange(key);\n        if (this.treeRef && this.treeRef.reloadRoot) this.treeRef.reloadRoot();\n      }\n    };\n\n    const handleResetSearch = () => {\n      if (onExpandedTaxonKeyChange) onExpandedTaxonKeyChange(null);\n    };\n\n    return (\n      <div className=\"catalogue-of-life\">\n        {citation === \"top\" && dataset && <Citation dataset={dataset} />}\n        <TreeCacheContext.Provider value={this.cache}>\n        <ColTreeContext.Provider value={this.state}>\n          <Row>\n            <Col flex=\"auto\">\n              <NameAutocomplete\n                hideExtinct={hideExtinct}\n                datasetKey={datasetKey}\n                style={{\n                  width: \"100%\",\n                  paddingTop: \"5px\",\n                  paddingBottom: \"5px\",\n                }}\n                defaultTaxonKey={expandedTaxonKey || null}\n                onSelectName={handleSelectName}\n                onResetSearch={handleResetSearch}\n              />\n            </Col>\n            {showTreeOptions && (\n              <Col style={{ paddingLeft: \"8px\" }}>\n                <Checkbox\n                  defaultChecked={this.state.showInfo}\n                  onChange={({ target: { checked } }) => {\n                    this.setState({ showInfo: checked });\n                    writeSetting(\"tree-show-source\", checked);\n                  }}\n                >\n                  Source\n                </Checkbox>\n\n                <Checkbox\n                  defaultChecked={this.state.hideExtinct}\n                  onChange={({ target: { checked } }) => {\n                    this.setState({ hideExtinct: checked });\n                    writeSetting(\"tree-extant-only\", checked);\n                  }}\n                >\n                  Extant only\n                </Checkbox>\n              </Col>\n            )}\n          </Row>\n          <ColTree\n            insertPlaceholder={insertPlaceholder}\n            hideExtinct={hideExtinct}\n            datasetKey={datasetKey}\n            defaultTaxonKey={defaultTaxonKey}\n            expandedTaxonKey={expandedTaxonKey}\n            onExpandedTaxonKeyChange={onExpandedTaxonKeyChange}\n            treeRef={(ref) => (this.treeRef = ref)}\n            type={type}\n          />\n        </ColTreeContext.Provider>\n        </TreeCacheContext.Provider>\n        {citation === \"bottom\" && dataset && <Citation dataset={dataset} />}\n      </div>\n    );\n  };\n}\n\n// Public wrapper: takes controlled props + navigation callbacks, builds\n// the RouterContext, hands the rest down.\nexport default 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "col-browser",
-  "version": "2.6.0",
+  "version": "2.6.2",
   "description": "Catalogue of Life browse and search React components",
   "main": "umd/col-browser.js",
   "module": "es/index.js",

package/umd/col-browser.js

@@ -69853,6 +69853,24 @@ html body {
       (res) => res.data
     );
   };
+  const vocabCache = /* @__PURE__ */ new Map();
+  const cachedVocab = (path, transform2) => {
+    const url = `${config.dataApi}vocab/${path}`;
+    if (!vocabCache.has(url)) {
+      vocabCache.set(
+        url,
+        client(url).then((res) => transform2(res.data)).catch((err) => {
+          vocabCache.delete(url);
+          throw err;
+        })
+      );
+    }
+    return vocabCache.get(url);
+  };
+  const getNomStatusVocab = () => cachedVocab(
+    "nomstatus",
+    (data) => data.reduce((a, c) => (a[c.name] = c, a), {})
+  );
   const token = "%[a-f0-9]{2}";
   const singleMatcher = new RegExp("(" + token + ")|([^%]+?)", "gi");
   const multiMatcher = new RegExp("(" + token + ")+", "gi");
@@ -77538,12 +77556,43 @@ html body {
     if (total <= visible && !showAll) return null;
     return /* @__PURE__ */ jsxRuntimeExports.jsx("a", { onClick: () => onChange(!showAll), style: { cursor: "pointer" }, children: showAll ? "Show less" : `Show all (${total})` });
   };
+  const NOM_CODES = /* @__PURE__ */ new Set([
+    "bacterial",
+    "botanical",
+    "cultivars",
+    "phyto",
+    "phylo",
+    "virus",
+    "zoological"
+  ]);
+  const nomStatusLabel = (vocab, nomStatus, code) => {
+    if (!nomStatus) return "";
+    const term = vocab == null ? void 0 : vocab[nomStatus];
+    if (!term) return nomStatus;
+    const key2 = NOM_CODES.has(code) && typeof term[code] === "string" ? code : "zoological";
+    return term[key2] || term.name || nomStatus;
+  };
+  const NomStatus = ({ nomStatus, code, brackets }) => {
+    const [vocab, setVocab] = reactExports.useState(null);
+    reactExports.useEffect(() => {
+      let cancelled = false;
+      getNomStatusVocab().then((v2) => {
+        if (!cancelled) setVocab(v2);
+      }).catch(() => {
+      });
+      return () => {
+        cancelled = true;
+      };
+    }, []);
+    if (!nomStatus) return null;
+    const label = nomStatusLabel(vocab, nomStatus, code);
+    return /* @__PURE__ */ jsxRuntimeExports.jsx(jsxRuntimeExports.Fragment, { children: brackets ? `(${label})` : label });
+  };
   const TOP_N = 5;
   const SynonymsTable = ({
     datasetKey,
     data,
     style: style2,
-    nomStatus,
     references,
     decisions,
     typeMaterial,
@@ -77552,7 +77601,6 @@ html body {
     misapplied
   }) => {
     const [showAll, setShowAll] = reactExports.useState(false);
-    const getNomStatus = (taxon) => !nomStatus ? get(taxon, "name.nomStatus") : nomStatus[get(taxon, "name.nomStatus")][get(taxon, "name.code"), "zoological"];
     const sorter = (a, b2) => {
       if (get(a, "name.combinationAuthorship.year") && get(b2, "name.combinationAuthorship.year")) {
         return get(b2, "name.combinationAuthorship.year") - get(a, "name.combinationAuthorship.year");
@@ -77630,7 +77678,14 @@ html body {
         }
       ),
       " ",
-      get(s, "name.nomStatus") ? `(${getNomStatus(s)})` : "",
+      /* @__PURE__ */ jsxRuntimeExports.jsx(
+        NomStatus,
+        {
+          nomStatus: get(s, "name.nomStatus"),
+          code: get(s, "name.code"),
+          brackets: true
+        }
+      ),
       " ",
       get(s, "status") === "misapplied" && get(s, "accordingTo") ? get(s, "accordingTo") : "",
       get(s, "status") === "ambiguous synonym" && "(Ambiguous)",
@@ -88282,7 +88337,6 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
           this.getInfo(taxonKey);
           this.getRank(taxonKey);
           this.getIncludes(taxonKey);
-          this.getNomStatus(taxonKey);
         }
       });
       __publicField(this, "getCatalogue", () => {
@@ -88445,13 +88499,6 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
           (res) => this.setState({ rank: res.data.map((r2) => r2.name) })
         );
       });
-      __publicField(this, "getNomStatus", () => {
-        client(`${config.dataApi}vocab/nomstatus`).then(
-          (res) => this.setState({
-            nomStatus: res.data.reduce((a, c) => (a[c.name] = c, a), {})
-          })
-        );
-      });
       __publicField(this, "getIncludes", (taxonKey) => {
         const { datasetKey } = this.props;
         client(
@@ -88484,7 +88531,6 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
         sourceDataset: null,
         includes: [],
         rank: [],
-        nomStatus: null,
         catalogue: null,
         referenceIndexMap: {},
         sourceDatasetKeyMap: null
@@ -88496,7 +88542,6 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
         this.getInfo(taxonKey);
         this.getRank(taxonKey);
         this.getIncludes(taxonKey);
-        this.getNomStatus(taxonKey);
       }
     }
     render() {
@@ -88514,7 +88559,6 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
         sourceDataset,
         includes: includes2,
         rank,
-        nomStatus,
         taxonError,
         synonymsError,
         classificationError,
@@ -88698,7 +88742,13 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
                 )
               ] })
             ] }),
-            get(taxon, "name.nomStatus") && nomStatus && /* @__PURE__ */ jsxRuntimeExports.jsx(PresentationItem$1, { md, label: "Nomenclatural Status", children: nomStatus[get(taxon, "name.nomStatus")][get(taxon, "name.code"), "zoological"] }),
+            get(taxon, "name.nomStatus") && /* @__PURE__ */ jsxRuntimeExports.jsx(PresentationItem$1, { md, label: "Nomenclatural Status", children: /* @__PURE__ */ jsxRuntimeExports.jsx(
+              NomStatus,
+              {
+                nomStatus: get(taxon, "name.nomStatus"),
+                code: get(taxon, "name.code")
+              }
+            ) }),
             infoError && /* @__PURE__ */ jsxRuntimeExports.jsx(Alert, { message: /* @__PURE__ */ jsxRuntimeExports.jsx(ErrorMsg, { error: infoError }), type: "error" }),
             !isSynonym && get(info, "synonyms") && /* @__PURE__ */ jsxRuntimeExports.jsx(PresentationItem$1, { md, label: "Synonyms and combinations", children: /* @__PURE__ */ jsxRuntimeExports.jsx(
               SynonymsTable,
@@ -89001,6 +89051,39 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
       this.getRank();
     }
   }
+  const findSectorTaxon = (datasetKey, sector) => {
+    const { id, mode, subject, target } = sector;
+    const byTarget = mode === "merge" || mode === "union";
+    const params = new URLSearchParams({ TAXON_ID: target.id });
+    if (byTarget) {
+      params.set("q", target.name);
+    } else {
+      params.set("SECTOR_KEY", id);
+      if (subject.rank) params.set("rank", subject.rank);
+      params.set("q", subject.name);
+    }
+    params.set("type", "EXACT");
+    return client(
+      `${config.dataApi}dataset/${datasetKey}/nameusage/search?${params}`
+    ).then((res) => {
+      const hits = get(res, "data.result") || [];
+      if (byTarget) {
+        return hits.find((h) => {
+          var _a2;
+          return ((_a2 = h.usage) == null ? void 0 : _a2.id) === target.id;
+        });
+      }
+      const parentId = (h) => {
+        var _a2, _b2;
+        return (_b2 = (_a2 = h.classification) == null ? void 0 : _a2[h.classification.length - 2]) == null ? void 0 : _b2.id;
+      };
+      return hits.find((h) => parentId(h) === target.id) || hits[0];
+    });
+  };
+  const searchable = (s) => {
+    var _a2, _b2;
+    return !!((_a2 = s == null ? void 0 : s.target) == null ? void 0 : _a2.id) && (s.mode === "merge" || s.mode === "union" ? !!s.target.name : !!((_b2 = s.subject) == null ? void 0 : _b2.name));
+  };
   class TaxonomicCoverage extends React.Component {
     constructor(props) {
       super(props);
@@ -89011,30 +89094,22 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
           `${config.dataApi}dataset/${datasetKey}/sector?limit=1000&subjectDatasetKey=${dataset.key}`
         ).then((res) => {
           return Promise.allSettled(
-            res.data.result.filter((t2) => !!(t2 == null ? void 0 : t2.target)).map(
-              (t2) => {
-                var _a2, _b2, _c, _d;
-                return client(
-                  `${config.dataApi}dataset/${datasetKey}/nameusage/search?TAXON_ID=${(_a2 = t2 == null ? void 0 : t2.target) == null ? void 0 : _a2.id}${((_b2 = t2 == null ? void 0 : t2.subject) == null ? void 0 : _b2.rank) ? "&rank=" + ((_c = t2 == null ? void 0 : t2.subject) == null ? void 0 : _c.rank) : ""}&q=${(_d = t2 == null ? void 0 : t2.subject) == null ? void 0 : _d.name}`
-                ).then((usages) => {
-                  const taxon = get(usages, "data.result[0]");
-                  if (taxon) {
-                    const path = taxon.classification.slice(1, taxon.classification.length - 1).map((t22) => t22.name).join(" > ");
-                    if (taxonMap[path]) {
-                      taxonMap[path].push(
-                        taxon.classification[taxon.classification.length - 1]
-                      );
-                    } else {
-                      taxonMap[path] = [
-                        taxon.classification[taxon.classification.length - 1]
-                      ];
-                    }
+            res.data.result.filter(searchable).map(
+              (s) => findSectorTaxon(datasetKey, s).then((hit) => {
+                if (hit) {
+                  const cl = hit.classification;
+                  const path = cl.slice(1, cl.length - 1).map((t2) => t2.name).join(" > ");
+                  const entry = { taxon: cl[cl.length - 1], merged: s.mode === "merge" };
+                  if (taxonMap[path]) {
+                    taxonMap[path].push(entry);
+                  } else {
+                    taxonMap[path] = [entry];
                   }
-                }).catch((err) => {
-                  console.log(t2);
-                  console.log(err);
-                });
-              }
+                }
+              }).catch((err) => {
+                console.log(s);
+                console.log(err);
+              })
             )
           ).then(() => this.setState({ taxonMap, loading: false }));
         });
@@ -89048,8 +89123,9 @@ Please report this to https://github.com/markedjs/marked.`, e2) {
             k !== "" ? ":" : ""
           ] }),
           " ",
-          taxonMap[k].map((tx, idx) => /* @__PURE__ */ jsxRuntimeExports.jsxs(React.Fragment, { children: [
-            /* @__PURE__ */ jsxRuntimeExports.jsx(LinkTo, { to: "tree", args: { taxonKey: tx.id }, children: tx.name }),
+          taxonMap[k].map(({ taxon, merged }, idx) => /* @__PURE__ */ jsxRuntimeExports.jsxs(React.Fragment, { children: [
+            merged && /* @__PURE__ */ jsxRuntimeExports.jsx(MergedDataBadge, {}),
+            /* @__PURE__ */ jsxRuntimeExports.jsx(LinkTo, { to: "tree", args: { taxonKey: taxon.id }, children: taxon.name }),
             idx !== taxonMap[k].length - 1 ? ", " : ""
           ] }, idx))
         ] }, k)) : "N/A" : /* @__PURE__ */ jsxRuntimeExports.jsx(Skeleton, { active: true, paragraph: { rows: 4 } });