col-browser 2.3.9 → 2.4.0

package/es/sourceDatasetList.js

@@ -2,18 +2,19 @@ var $ = Object.defineProperty;
 var B = (r, l, a) => l in r ? $(r, l, { enumerable: !0, configurable: !0, writable: !0, value: a }) : r[l] = a;
 var m = (r, l, a) => B(r, typeof l != "symbol" ? l + "" : l, a);
 import { a as D } from "./chunks/withDatasetKey-BgMY05XE.js";
-import { c as x, w as P } from "./chunks/config-B2Z9BaEd.js";
+import { w as P } from "./chunks/withTheme-Dh6PRuII.js";
 import { j as s } from "./chunks/jsx-runtime-BzflLqGi.js";
 import R from "react";
-import { s as w, c as f, L as d, R as v, b as T } from "./chunks/router-CssZk5qZ.js";
+import { s as w, c as x, L as d, R as v, b as T } from "./chunks/router-CssZk5qZ.js";
 import { Row as j, Alert as I, Col as y, Checkbox as E, Table as A, Tooltip as C } from "antd";
+import { c as f } from "./chunks/config-D1NH4DTr.js";
 import { get as M, merge as _, isArray as K } from "lodash-es";
 import { E as G } from "./chunks/ErrorMsg-K8k5PPTp.js";
-import { D as F } from "./chunks/DatasetlogoWithFallback-BhWvpgDn.js";
+import { D as F } from "./chunks/DatasetlogoWithFallback-Dava2uqZ.js";
 import { M as H } from "./chunks/MetricsPresentation-DKCJQOtf.js";
 import { P as k } from "./chunks/PresentationItem-C4yZ555-.js";
-import { M as z } from "./chunks/MergedDataBadge-DK4XUXsL.js";
-import { X as L } from "./chunks/XrGutter-CORP2r5Y.js";
+import { M as z } from "./chunks/MergedDataBadge-C1CgoRFz.js";
+import { X as L } from "./chunks/XrGutter-CU7_QPAp.js";
 const S = (r) => {
   const l = r.key ? { SECTOR_DATASET_KEY: r.key } : { SECTOR_PUBLISHER_KEY: r.id };
   return K(r.sectorModes) && (l.sectorMode = r.sectorModes), l;
@@ -197,12 +198,12 @@ class U extends R.Component {
       this.setState({ loading: !0 });
       const { datasetKey: a } = this.props;
       Promise.all([
-        f(
+        x(
           /* `${config.dataApi}dataset?limit=1000&contributesTo=${datasetKey}&sortBy=alias` */
           // `${config.dataApi}dataset/${datasetKey}/source?inclPublisherSources=false`
-          `${x.dataApi}dataset/${a}/source?splitMerge=true`
+          `${f.dataApi}dataset/${a}/source?splitMerge=true`
         ),
-        f(`${x.dataApi}dataset/${a}/sector/publisher?limit=1000`)
+        x(`${f.dataApi}dataset/${a}/sector/publisher?limit=1000`)
       ]).then(([i, e]) => {
         let o = {};
         const u = i.data || [], h = M(e, "data.result", []);
@@ -231,14 +232,14 @@ class U extends R.Component {
         this.setState({ loading: !1, error: i, data: [] });
       });
     });
-    m(this, "getMetrics", (a, i) => f(
-      `${x.dataApi}dataset/${a}/source/${i == null ? void 0 : i.key}/metrics?merged=${i == null ? void 0 : i.merged}`
+    m(this, "getMetrics", (a, i) => x(
+      `${f.dataApi}dataset/${a}/source/${i == null ? void 0 : i.key}/metrics?merged=${i == null ? void 0 : i.merged}`
     ).then((e) => e.data));
-    m(this, "getPublisherMetrics", (a, i) => f(
-      `${x.dataApi}dataset/${a}/sector/publisher/${i}/metrics`
+    m(this, "getPublisherMetrics", (a, i) => x(
+      `${f.dataApi}dataset/${a}/sector/publisher/${i}/metrics`
     ).then((e) => e.data));
     m(this, "getRank", () => {
-      f(`${x.dataApi}vocab/rank`).then(
+      x(`${f.dataApi}vocab/rank`).then(
         (a) => this.setState({ rank: a.data.map((i) => i.name) })
       );
     });
@@ -356,8 +357,8 @@ function X({
 }) {
   return /* @__PURE__ */ s.jsx(v.Provider, { value: T(a), children: /* @__PURE__ */ s.jsx(U, { datasetKey: r, auth: l }) });
 }
-const re = P(D(X));
+const le = P(D(X));
 export {
-  re as SourceDatasetList
+  le as SourceDatasetList
 };
 //# sourceMappingURL=sourceDatasetList.js.map

package/es/sourceDatasetList.js.map

@@ -1 +1 @@
-{"version":3,"file":"sourceDatasetList.js","sources":["../src/SourceDatasetList/index.js","../src/entries/sourceDatasetList.js"],"sourcesContent":["import React from \"react\";\nimport client, { setAuth } from \"../api/client\";\nimport { Table, Alert, Row, Col, Tooltip, Checkbox } from \"antd\";\nimport config from \"../config\";\nimport { get, isArray, merge } from \"lodash-es\";\nimport ErrorMsg from \"../components/ErrorMsg\";\nimport DatasetlogoWithFallback from \"../components/DatasetlogoWithFallback\";\nimport MetricsPresentation from \"../SourceDataset/MetricsPresentation\";\nimport PresentationItem from \"../components/PresentationItem\";\nimport MergedDataBadge from \"../components/MergedDataBadge\";\nimport XrGutter from \"../components/XrGutter\";\nimport { RouterContext, buildRouter, LinkTo } from \"../router\";\nconst baseFilters = (record) => {\n  const f = record.key\n    ? { SECTOR_DATASET_KEY: record.key }\n    : { SECTOR_PUBLISHER_KEY: record.id };\n  if (isArray(record.sectorModes)) f.sectorMode = record.sectorModes;\n  return f;\n};\nconst getLivingSpecies = (record, rank) =>\n  get(record, `metrics.taxaByRankCount.${rank || \"species\"}`) || 0;\nconst getExtinctSpecies = (record) =>\n  get(record, \"metrics.extinctTaxaByRankCount.species\") || 0;\nconst getSearchParam = (dataset) =>\n  dataset.key\n    ? `SECTOR_DATASET_KEY=${dataset.key}`\n    : `SECTOR_PUBLISHER_KEY=${dataset.id}`;\n\nconst getColumns = (\n  datasetKey,\n  auth,\n  hasPublishers\n) =>\n  [\n    {\n      title: \"Title\",\n\n      dataIndex: [\"alias\"],\n      key: \"title\",\n      ellipsis: true,\n      render: (text, record) => {\n        return (\n          <>\n            {record.id ? (\n              <XrGutter merged>\n                {\"Publisher: \"}{\" \"}\n                <a\n                  href={`https://www.checklistbank.org/dataset/${datasetKey}/publisher/${record.id}`}\n                  target=\"_blank\"\n                  rel=\"noopener noreferrer\"\n                  dangerouslySetInnerHTML={{ __html: text }}\n                />{\" \"}\n              </XrGutter>\n            ) : (\n              <>\n                <XrGutter merged={!!record?.merged}>\n                  <LinkTo to=\"source\" args={record.key}>\n                    {record.alias || record.title}\n                  </LinkTo>\n                </XrGutter>\n               {!!record?.taxonomicScope && <br/>}\n              </>\n            )}\n            {!!record?.taxonomicScope && record?.taxonomicScope/* (\n              <div style={{ width: \"90%\", wordBreak: \"break-all\" }}>\n                {record.taxonomicScope.length > 200\n                  ? record.taxonomicScope.substring(0, 200) + \"...\"\n                  : record.taxonomicScope}\n              </div>\n            ) */}\n          </>\n        );\n      },\n      width: \"30%\",\n      sorter: (a, b) =>\n        a.alias && b.alias ? a.alias.localeCompare(b.alias) : 0,\n      // defaultSortOrder: 'ascend'\n    },\n    {\n      title: \"Datasets\",\n      dataIndex: [\"metrics\", \"datasetCount\"],\n      key: \"datasets\",\n      render: (text, record) =>\n        get(record, \"metrics.datasetCount\", 1).toLocaleString(\"en-GB\"),\n    },\n    /*  {\n    title: \"Version\",\n    dataIndex: [\"version\"],\n    key: \"version\"\n  }, */\n/*     {\n      title: \"\",\n      dataIndex: [\"logo\"],\n      key: \"logo\",\n      render: (text, record) => (\n        <DatasetlogoWithFallback\n          auth={auth}\n          datasetKey={datasetKey}\n          datasetKey={record.key}\n          style={{ maxHeight: \"32px\" }}\n          size=\"SMALL\"\n        />\n      ),\n    }, */\n    /* {\n    title: \"Taxonomic scope\",\n    dataIndex: [\"taxonomicScope\"],\n    key: \"taxonomicScope\",\n    ellipsis: true,\n\n  }, */\n   {\n      title: (\n        <Tooltip\n          placement=\"topLeft\"\n          title={\"Count of all accepted families including extinct species\"}\n          getPopupContainer={() => document.getElementById(\"familyCount\")}\n        >\n          <span id=\"familyCount\">Families</span>\n        </Tooltip>\n      ),\n      dataIndex: [\"metrics\", \"taxaByRankCount\", \"family\"],\n      key: \"species\",\n      render: (text, record) => (\n        <LinkTo\n          to=\"search\"\n          args={{\n            ...baseFilters(record),\n            rank: \"family\",\n            status: [\"accepted\", \"provisionally accepted\"],\n          }}\n        >\n          {getLivingSpecies(record, \"family\").toLocaleString(\"en-GB\")}\n        </LinkTo>\n      ),\n      sorter: (a, b) => getLivingSpecies(a,\"family\") - getLivingSpecies(b,\"family\"),\n    },\n       {\n      title: (\n        <Tooltip\n          placement=\"topLeft\"\n          title={\"Count of all accepted genera including extinct species\"}\n          getPopupContainer={() => document.getElementById(\"genusCount\")}\n        >\n          <span id=\"genusCount\">Genera</span>\n        </Tooltip>\n      ),\n      dataIndex: [\"metrics\", \"taxaByRankCount\", \"genus\"],\n      key: \"species\",\n      render: (text, record) => (\n        <LinkTo\n          to=\"search\"\n          args={{\n            ...baseFilters(record),\n            rank: \"genus\",\n            status: [\"accepted\", \"provisionally accepted\"],\n          }}\n        >\n          {getLivingSpecies(record, \"genus\").toLocaleString(\"en-GB\")}\n        </LinkTo>\n      ),\n      sorter: (a, b) => getLivingSpecies(a,\"genus\") - getLivingSpecies(b,\"genus\"),\n    },\n    {\n      title: (\n        <Tooltip\n          placement=\"topLeft\"\n          title={\"Count of all accepted species including extinct species\"}\n          getPopupContainer={() => document.getElementById(\"speciesCount\")}\n        >\n          <span id=\"speciesCount\">Species</span>\n        </Tooltip>\n      ),\n      dataIndex: [\"metrics\", \"taxaByRankCount\", \"species\"],\n      key: \"species\",\n      render: (text, record) => (\n        <LinkTo\n          to=\"search\"\n          args={{\n            ...baseFilters(record),\n            rank: \"species\",\n            status: [\"accepted\", \"provisionally accepted\"],\n          }}\n        >\n          {getLivingSpecies(record).toLocaleString(\"en-GB\")}\n        </LinkTo>\n      ),\n      sorter: (a, b) => getLivingSpecies(a) - getLivingSpecies(b),\n    },\n\n  ].filter((clm) => (!hasPublishers ? clm.key !== \"datasets\" : true));\n\nclass SourceDatasetListPage extends React.Component {\n  constructor(props) {\n    super(props);\n    setAuth(this.props.auth);\n    this.state = {\n      data: [],\n      rank: null,\n      hasPublishers: false,\n      loading: false,\n      showMerged: true,\n    };\n  }\n\n  componentDidMount = () => {\n    this.getData();\n    this.getRank();\n  };\n\n  /* \n  getDataOLD = () => {\n    this.setState({ loading: true });\n    const { datasetKey } = this.props;\n   \n    client(`${config.dataApi}dataset/${datasetKey}/source`)\n    .then((res) => {\n          return Promise.all(\n            res.data.map((r) => \n                client(\n                    `${config.dataApi}dataset/${datasetKey}/source/${r.key}/metrics`\n                  ).then((res) => ({...r, metrics: res.data}))\n              \n            )\n          );\n        \n      })\n      .then(data => {\n\n        this.setState({\n          loading: false,\n          data: data,\n          err: null\n        });\n      })\n      .catch(err => {\n        this.setState({ loading: false, error: err, data: [] });\n      });\n  }; */\n\n  getData = () => {\n    this.setState({ loading: true });\n    const { datasetKey } = this.props;\n    Promise.all([\n      client(\n        /* `${config.dataApi}dataset?limit=1000&contributesTo=${datasetKey}&sortBy=alias` */\n        // `${config.dataApi}dataset/${datasetKey}/source?inclPublisherSources=false`\n        `${config.dataApi}dataset/${datasetKey}/source?splitMerge=true`\n      ),\n      client(`${config.dataApi}dataset/${datasetKey}/sector/publisher?limit=1000`),\n    ])\n      .then(([res, publisherRes]) => {\n        let columns = {};\n        const datasetData = res.data || [];\n        const publisherData = get(publisherRes, \"data.result\", []);\n        if (publisherData.length > 0) {\n          this.setState({ hasPublishers: true });\n        }\n        return Promise.all([\n          ...publisherData.map((r) => {\n            return this.getPublisherMetrics(datasetKey, r.id).then(\n              (metrics) => {\n                // columns = merge(columns, metrics);\n                return {\n                  ...r,\n                  metrics: metrics,\n                };\n              }\n            );\n          }),\n          ...datasetData.map((r) => {\n            return this.getMetrics(datasetKey, r).then((metrics) => {\n              columns = merge(columns, metrics);\n              return {\n                ...r,\n                metrics: metrics,\n              };\n            });\n          }),\n        ]);\n      })\n      .then((data) => {\n        this.setState({\n          loading: false,\n          data: data\n            .filter((p) => !p?.id || (!!p?.id && p?.metrics?.sectorCount > 0))\n            .sort((a, b) => {\n              if (!!a.id && !b.id) {\n                return a;\n              } else if (!!b.id && !a.id) {\n                return b;\n              } else if (a.alias && b.alias) {\n                return a.alias.localeCompare(b.alias) === 0\n                  ? a.merged === true\n                    ? 1\n                    : -1\n                  : a.alias.localeCompare(b.alias);\n              } else {\n                return 0;\n              }\n            }),\n          err: null,\n        });\n      })\n      .catch((err) => {\n        this.setState({ loading: false, error: err, data: [] });\n      });\n  };\n\n  getMetrics = (datasetKey, source) => {\n    return client(\n      `${config.dataApi}dataset/${datasetKey}/source/${source?.key}/metrics?merged=${source?.merged}`\n    ).then((res) => res.data);\n  };\n  getPublisherMetrics = (datasetKey, publisherId) => {\n    return client(\n      `${config.dataApi}dataset/${datasetKey}/sector/publisher/${publisherId}/metrics`\n    ).then((res) => res.data);\n  };\n\n  getRank = () => {\n    client(`${config.dataApi}vocab/rank`).then((res) =>\n      this.setState({ rank: res.data.map((r) => r.name) })\n    );\n  };\n\n  render() {\n    const { data, loading, rank, hasPublishers, error } = this.state;\n    const { datasetKey } = this.props;\n\n    return (\n      <div\n        className=\"catalogue-of-life\"\n        style={{\n          background: \"#fff\",\n          padding: 24,\n          minHeight: 280,\n          margin: \"16px 0\",\n        }}\n      >\n        <Row>\n          {error && (\n            <Alert\n              style={{ marginBottom: \"10px\" }}\n              message={<ErrorMsg error={error} />}\n              type=\"error\"\n            />\n          )}\n        </Row>\n\n        <Row>\n          <Col span={12} style={{ marginBottom: \"8px\" }}>\n            Include <MergedDataBadge />{\" \"}\n            <Checkbox\n              checked={this.state.showMerged}\n              onChange={({ target: { checked } }) =>\n                this.setState({\n                  showMerged: checked,\n                })\n              }\n            />\n          </Col>\n          <Col span={12} style={{ textAlign: \"right\", marginBottom: \"8px\" }}>\n            {/* {`Source datasets: ${data\n              .filter((d) => {\n                if (!this.state.showMerged && d?.merged) {\n                  return false;\n                }\n                if (!d?.metrics?.publisherKey) {\n                  return true;\n                } else {\n                  return !(\n                    d?.metrics?.datasetCount === 0 ||\n                    d?.metrics?.usagesCount === 0\n                  );\n                }\n              })\n              .length.toLocaleString(\"en-GB\")}`} */}\n              {`Source datasets: ${data.reduce((acc, d) => {\n                if (!this.state.showMerged && (d?.merged || !!d?.id)) {\n                  return acc;\n                }\n                if (!d?.metrics?.publisherKey) {\n                  return acc + 1;\n                }\n                if (d?.metrics?.publisherKey) {\n                  return acc + d?.metrics?.datasetCount;\n                }\n              },0).toLocaleString(\"en-GB\")}`}\n          </Col>\n        </Row>\n        {!error && (\n          <Table\n            size=\"small\"\n            columns={getColumns(datasetKey, this.props.auth, hasPublishers)}\n            dataSource={data.filter((d) => {\n              if (!this.state.showMerged && (d?.merged || !!d?.id)) {\n                return false;\n              }\n              \n              if (!d?.metrics?.publisherKey) {\n                return true;\n              } else {\n                return !(\n                  d?.metrics?.datasetCount === 0 ||\n                  d?.metrics?.usagesCount === 0\n                );\n              }\n            })}\n            loading={loading}\n            rowKey={(record) => `${record.key || record.id}-${record.merged}`}\n            showSorterTooltip={false}\n            pagination={false}\n            expandedRowRender={(dataset) => (\n              <div style={{ marginLeft: \"40px\" }}>\n                \n                <Row>\n                  <Col flex=\"auto\" style={{paddingLeft: \"8px\"}}><h3>{dataset?.title}</h3></Col>\n                  <Col>\n                    <DatasetlogoWithFallback\n                      auth={this.props.auth}\n                      datasetKey={datasetKey}\n                      sourceDatasetKey={dataset.key}\n                      style={{ maxHeight: \"64px\" }}\n                      size=\"MEDIUM\"\n                    />\n                  </Col>\n                </Row>\n                <MetricsPresentation\n                  metrics={dataset.metrics}\n                  dataset={dataset}\n                  rank={rank}\n                />\n                <div style={{ marginTop: \"12px\" }}>\n                  {dataset?.version && (\n                    <PresentationItem md={8} label={`Dataset version`}>\n                      {dataset.version}\n                    </PresentationItem>\n                  )}\n\n                  {dataset?.taxonomicScope && (\n                    <PresentationItem md={8} label={`Taxonomic scope`}>\n                      {dataset.taxonomicScope}\n                    </PresentationItem>\n                  )}\n                </div>\n\n                {dataset.citation && (\n                  <div style={{ marginTop: \"12px\" }}>\n                    <PresentationItem md={24} label={`Citation`}>\n                      <div\n                        dangerouslySetInnerHTML={{ __html: dataset.citation }}\n                      ></div>\n                    </PresentationItem>\n                  </div>\n                )}\n              </div>\n            )}\n          />\n        )}\n      </div>\n    );\n  }\n}\n\nexport default function SourceDatasetList({\n  datasetKey,\n  auth,\n  ...routerProps\n}) {\n  return (\n    <RouterContext.Provider value={buildRouter(routerProps)}>\n      <SourceDatasetListPage datasetKey={datasetKey} auth={auth} />\n    </RouterContext.Provider>\n  );\n}\n","import withDatasetKey from \"../withDatasetKey\";\nimport { withTheme } from \"../withTheme\";\nimport sourceDatasetList from \"../SourceDatasetList\";\n\nexport const SourceDatasetList = 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{\n      title: (\n        <Tooltip\n          placement=\"topLeft\"\n          title={\"Count of all accepted genera including extinct species\"}\n          getPopupContainer={() => document.getElementById(\"genusCount\")}\n        >\n          <span id=\"genusCount\">Genera</span>\n        </Tooltip>\n      ),\n      dataIndex: [\"metrics\", \"taxaByRankCount\", \"genus\"],\n      key: \"species\",\n      render: (text, record) => (\n        <LinkTo\n          to=\"search\"\n          args={{\n            ...baseFilters(record),\n            rank: \"genus\",\n            status: [\"accepted\", \"provisionally accepted\"],\n          }}\n        >\n          {getLivingSpecies(record, \"genus\").toLocaleString(\"en-GB\")}\n        </LinkTo>\n      ),\n      sorter: (a, b) => getLivingSpecies(a,\"genus\") - getLivingSpecies(b,\"genus\"),\n    },\n    {\n      title: (\n        <Tooltip\n          placement=\"topLeft\"\n          title={\"Count of all accepted species including extinct 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loading: false,\n      showMerged: true,\n    };\n  }\n\n  componentDidMount = () => {\n    this.getData();\n    this.getRank();\n  };\n\n  /* \n  getDataOLD = () => {\n    this.setState({ loading: true });\n    const { datasetKey } = this.props;\n   \n    client(`${config.dataApi}dataset/${datasetKey}/source`)\n    .then((res) => {\n          return Promise.all(\n            res.data.map((r) => \n                client(\n                    `${config.dataApi}dataset/${datasetKey}/source/${r.key}/metrics`\n                  ).then((res) => ({...r, metrics: res.data}))\n              \n            )\n          );\n        \n      })\n      .then(data => {\n\n        this.setState({\n          loading: false,\n          data: data,\n          err: null\n        });\n      })\n      .catch(err => {\n        this.setState({ loading: false, error: err, data: [] });\n      });\n  }; */\n\n  getData = () => {\n    this.setState({ loading: true });\n    const { datasetKey } = this.props;\n    Promise.all([\n      client(\n        /* `${config.dataApi}dataset?limit=1000&contributesTo=${datasetKey}&sortBy=alias` */\n        // `${config.dataApi}dataset/${datasetKey}/source?inclPublisherSources=false`\n        `${config.dataApi}dataset/${datasetKey}/source?splitMerge=true`\n      ),\n      client(`${config.dataApi}dataset/${datasetKey}/sector/publisher?limit=1000`),\n    ])\n      .then(([res, publisherRes]) => {\n        let columns = {};\n        const datasetData = res.data || [];\n        const publisherData = get(publisherRes, \"data.result\", []);\n        if (publisherData.length > 0) {\n          this.setState({ hasPublishers: true });\n        }\n        return Promise.all([\n          ...publisherData.map((r) => {\n            return this.getPublisherMetrics(datasetKey, r.id).then(\n              (metrics) => {\n                // columns = merge(columns, metrics);\n                return {\n                  ...r,\n                  metrics: metrics,\n               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