cohorte 2.10.1 → 3.0.0-dev.0

package/install.sh

@@ -1,114 +0,0 @@
-#!/bin/sh
-#
-# install.sh — install the portable multi-agent pipeline.
-# POSIX sh (works with dash/bash/zsh).
-#
-#   Per-project install (default — bundles the core into <target>/.claude, committable):
-#     sh install.sh [target_dir]
-#     curl -fsSL <raw-url>/install.sh | sh
-#
-#   Global install (one core in ~/.claude, shared by every repo on this machine):
-#     sh install.sh --global
-#     curl -fsSL <raw-url>/install.sh | sh -s -- --global
-#
-#   Update the generic core in place (keeps any generated PIPELINE.md + rendered agents):
-#     sh install.sh --update [target_dir]
-#     sh install.sh --update --global
-#
-# Per-project install copies the core into <target>/.claude; global install copies it once
-# into ~/.claude and registers the gate hook there. Either way you then run `/cohorte-init-pipeline`
-# in each repo to generate PIPELINE.md + render the surface agents. Update refreshes ONLY the
-# stack-agnostic files; generated profiles, rendered agents, gate-config.json and any project
-# settings.json are left untouched.
-
-set -eu
-
-REPO_URL="${PIPELINE_REPO:-https://github.com/TheBidouilleAgency/cohorte}"
-
-mode="install"
-scope="project"
-positional=""
-while [ $# -gt 0 ]; do
-  case "$1" in
-    --update) mode="update"; shift ;;
-    --global) scope="global"; shift ;;
-    -h|--help)
-      cat <<'USAGE'
-install.sh — install the cohorte pipeline core.
-
-  sh install.sh [target_dir]        per-project: bundle the core into <target>/.claude
-  sh install.sh --global            one shared core in ~/.claude (recommended)
-  sh install.sh --update [target]   refresh the core in place, keep every generated file
-  sh install.sh --update --global
-
-Honours $CLAUDE_CONFIG_DIR for the global destination and $PIPELINE_REPO for the
-source when piped through curl. The npm CLI (`npm i -g cohorte` then `cohorte install`)
-does the same thing and is the documented route; this script exists for npm-less
-setups (curl straight from the repo). Node itself is still required — the commands
-are rendered per coding agent at install time and there is no shell renderer.
-USAGE
-      exit 0 ;;
-    --)       shift; break ;;
-    -*)       echo "error: unknown flag: $1 (try --help)" >&2; exit 2 ;;
-    *)        positional="$1"; shift ;;
-  esac
-done
-target="${positional:-$PWD}"
-
-# --- locate the source (this checkout, or clone if piped via curl) ----------
-src=""
-self="${0:-}"
-self_dir=""
-case "$self" in
-  # `sh install.sh` from inside a checkout hands $0 with no slash — the old */*-only
-  # case missed it and silently CLONED the remote instead of installing the local
-  # tree the human was standing in (dirname of a bare name is `.`, which is exactly
-  # right here; the piped-stdin case stays `sh`, matches neither arm, and clones).
-  */*)          self_dir=$(CDPATH= cd -- "$(dirname -- "$self")" && pwd) ;;
-  *install.sh*) self_dir=$(pwd) ;;
-esac
-if [ -n "$self_dir" ] && [ -d "$self_dir/core" ]; then
-  src="$self_dir"
-else
-  echo "→ fetching pipeline from $REPO_URL"
-  tmp=$(mktemp -d)
-  trap 'rm -rf "$tmp"' EXIT
-  git clone --depth 1 "$REPO_URL" "$tmp/pipeline" >/dev/null 2>&1
-  src="$tmp/pipeline"
-fi
-[ -d "$src/core" ] || { echo "error: pipeline source not found (no core/ in $src)" >&2; exit 1; }
-
-# --- require Node >= 18, then delegate to the Node CLI -----------------------
-# Since 2.2.0 the commands in core/ are runtime-NEUTRAL sources: they carry capability
-# conditionals (`<!-- cohorte:if subagents -->`) and path tokens (`<core>`, `<state>`) that
-# the adapter resolves per coding agent. Copying them verbatim, as this script used to,
-# would install prompts full of unresolved markers — an install that looks successful and
-# instructs the model with text meant for a different runtime. There is no shell renderer,
-# so the whole job goes to bin/cli.js, which is the documented route anyway. (The legacy
-# copy-verbatim shell path was removed in 2.7.0 — it had been unreachable dead code since
-# 2.2.0, and its text was what validate-core's copy checks were vacuously matching.)
-if command -v node >/dev/null 2>&1; then
-  # An old Node fails DEEP into cli.js (fs.cpSync needs >= 16.7) after some files are
-  # already on disk — a half-install that reports as a crash. Refuse up front instead.
-  node_major=$(node -p 'process.versions.node.split(".")[0]' 2>/dev/null || echo 0)
-  case "$node_major" in *[!0-9]*) node_major=0 ;; esac
-  if [ "$node_major" -lt 18 ]; then
-    echo "error: cohorte needs Node >= 18 — found $(node --version 2>/dev/null || echo '?')." >&2
-    echo "  Upgrade Node, then re-run this script (or: npm i -g cohorte && cohorte install$([ "$scope" = global ] && echo ' --global'))." >&2
-    exit 1
-  fi
-  set -- install
-  [ "$mode" = "update" ] && set -- update
-  [ "$scope" = "global" ] && set -- "$@" --global
-  [ "$scope" = "project" ] && set -- "$@" "$target"
-  # Not `exec`: exec replaces this shell, so the curl-path EXIT trap (rm -rf "$tmp")
-  # never fires and every piped install leaks the shallow clone in $TMPDIR.
-  node "$src/bin/cli.js" "$@"
-  exit $?
-fi
-echo "error: cohorte needs Node >= 18 to install." >&2
-echo "  The pipeline's commands are rendered per coding agent (Claude Code, Codex, Cursor," >&2
-echo "  Gemini CLI, OpenCode) at install time; there is no shell equivalent of that step," >&2
-echo "  and a raw copy would install prompts this runtime cannot follow." >&2
-echo "  Install Node, then:  npm i -g cohorte && cohorte install$([ "$scope" = global ] && echo ' --global')" >&2
-exit 1

package/lib/doctor.js

@@ -1,534 +0,0 @@
-'use strict';
-// Programmatic port of the /cohorte-doctor checks (core/commands/cohorte-doctor.md), so
-// `cohorte doctor` can report without a coding agent in the loop.
-// Read-only: inspects files only. Checks that need a live process (MCP connectivity,
-// git worktree state, DesignSync) are reported as `skip` with a note — the node server
-// can't run them, and honest "not checked here" beats a false green.
-
-const fs = require('fs');
-const path = require('path');
-const { layouts, stateDirs } = require('./runtime.js');
-const { parseProfileBlock } = require('./yaml');
-const { versions } = require('./versions');
-
-// Rendered surface agents live alongside these fixed (non-surface) agents; exclude them
-// from the orphan check so they're never mistaken for a stray surface agent.
-const FIXED_AGENTS = new Set([
-  'review', 'release', 'profile-reader',
-  // retired (1.5.0) — still excluded so a stale install's leftover file isn't
-  // reported as a stray surface agent.
-  'smoke',
-  'implementer.template',
-]);
-
-// The spec lifecycle (SCHEMA.md §Spec status). `in-progress` and `blocked` stay valid after
-// /cohorte-loop was retired in 2.2.0: specs in existing repos carry them, and an external driver
-// still needs somewhere to record "a round is under way" / "a round gave up".
-const VALID_STATUS = ['draft', 'frozen', 'in-progress', 'in-review', 'shipped', 'blocked'];
-
-// Artifacts the pipeline itself writes into specs/ that are NOT feature specs and have no
-// front-matter status. `/cohorte-audit` writes specs/refactor-backlog.md by design, so scanning it
-// as a spec made /cohorte-doctor warn about a file cohorte had just created — a false positive that
-// fired in every project that had ever run /cohorte-audit. `_`-prefixed files (e.g. _template.md)
-// are already skipped by the reader below.
-const NON_SPEC_FILES = new Set(['refactor-backlog.md']);
-
-const exists = p => { try { return fs.existsSync(p); } catch { return false; } };
-const readText = p => { try { return fs.readFileSync(p, 'utf8'); } catch { return null; } };
-const readJson = p => { try { return JSON.parse(fs.readFileSync(p, 'utf8')); } catch { return null; } };
-const isTrue = v => v === true;
-const sameSet = (a, b) => {
-  const A = new Set(a || []), B = new Set(b || []);
-  if (A.size !== B.size) return false;
-  for (const x of A) if (!B.has(x)) return false;
-  return true;
-};
-
-// Paths are reported to a human looking at a repo: show them relative to it.
-const rel = (projectRoot) => (p) => {
-  const r = path.relative(projectRoot, p);
-  return r && !r.startsWith('..') ? r : p;
-};
-
-function mk(id, label, status, detail, fix) {
-  return fix ? { id, label, status, detail, fix } : { id, label, status, detail };
-}
-
-function acrossRuntimes(all, check) {
-  const distinct = all.filter((l, i) => all.findIndex(other => other.id === l.id) === i);
-  const results = (distinct.length ? distinct : [null]).map(check);
-  if (results.length === 1) return results[0];
-  const rank = { skip: 0, ok: 1, warn: 2, bad: 3 };
-  const worst = results.reduce((a, b) => rank[b.status] > rank[a.status] ? b : a);
-  return { ...worst, detail: results.map((r, i) => `${distinct[i].label}: ${r.detail}`).join(' · ') };
-}
-
-// --- individual checks -------------------------------------------------------
-
-function checkCore(v) {
-  if (v.installMode === 'none') {
-    return mk('core', 'Core & pointer', 'bad', 'no pipeline core installed for this project',
-      'cohorte install   (or --global)');
-  }
-  if (v.pointer.present && v.pointer.core_version && v.installedVersion &&
-      v.pointer.core_version !== v.installedVersion) {
-    return mk('core', 'Core & pointer', 'warn',
-      `pointer says core ${v.pointer.core_version} but installed core is ${v.installedVersion}`,
-      'cohorte update   (reconcile the pointer)');
-  }
-  if (v.freshness === -1) {
-    return mk('core', 'Core & pointer', 'warn',
-      `core ${v.installedVersion} installed (${v.installMode}); npm latest is ${v.latest}`,
-      '/cohorte-update-pipeline   (or  cohorte update)');
-  }
-  const tail = v.latest ? `, npm latest ${v.latest}` : ', npm unreachable';
-  return mk('core', 'Core & pointer', 'ok', `core ${v.installedVersion} (${v.installMode})${tail}`);
-}
-
-function checkProfile(profile, hasPipelineMd) {
-  if (!hasPipelineMd) {
-    return mk('profile', 'Profile (PIPELINE.md)', 'bad', 'PIPELINE.md not found',
-      '/cohorte-init-pipeline   (generate the project profile)');
-  }
-  if (!profile) {
-    return mk('profile', 'Profile (PIPELINE.md)', 'bad',
-      'PIPELINE.md present but its `yaml pipeline-profile` block is missing or unparseable',
-      '/cohorte-init-pipeline   (or fix the fenced yaml block)');
-  }
-  const n = (profile.surfaces || []).length;
-  return mk('profile', 'Profile (PIPELINE.md)', n ? 'ok' : 'warn',
-    `${profile.name || 'unnamed'} · ${n} surface${n === 1 ? '' : 's'}`,
-    n ? undefined : 'add at least one surface to §surfaces');
-}
-
-function checkAgents(profile, projectRoot, layout) {
-  if (!profile || !(profile.surfaces || []).length) {
-    return mk('agents', 'Surfaces ↔ agents', 'skip', 'no surfaces to reconcile');
-  }
-  if (!layout) {
-    return mk('agents', 'Surfaces ↔ agents', 'skip', 'no core installed — nothing renders agents yet');
-  }
-  const agentsDir = layout.surfaceAgents || layout.agents;
-  const ext = layout.agentExt || (layout.id === 'codex' ? '.toml' : '.md');
-  const surfaceAgents = profile.surfaces.map(s => s.agent).filter(Boolean);
-
-  const missing = surfaceAgents.filter(a => !exists(path.join(agentsDir, `${a}${ext}`)));
-
-  let files = [];
-  try { files = fs.readdirSync(agentsDir).filter(f => f.endsWith(ext)).map(f => f.slice(0, -ext.length)); }
-  catch { /* dir absent → handled by `missing` */ }
-  // Orphan detection only makes sense against a PROJECT agents dir. A global install's
-  // agents dir (~/.claude/agents) is the user's shared Claude Code space — their personal
-  // agents and other cohorte projects' surface agents live there legitimately, and
-  // flagging them sent humans deleting files that were not this project's to judge.
-  const orphans = layout.scope === 'global' && layout.id !== 'codex'
-    ? []
-    : files.filter(f => !FIXED_AGENTS.has(f) && !surfaceAgents.includes(f));
-
-  if (missing.length) {
-    return mk('agents', 'Surfaces ↔ agents', 'bad',
-      `surface(s) with no rendered agent: ${missing.join(', ')}`,
-      '/cohorte-init-pipeline   (re-render surface agents)');
-  }
-  if (orphans.length) {
-    return mk('agents', 'Surfaces ↔ agents', 'warn',
-      `agent file(s) with no owning surface: ${orphans.join(', ')}`,
-      'remove the stale agent file, or add its surface to PIPELINE.md');
-  }
-  return mk('agents', 'Surfaces ↔ agents', 'ok',
-    `${surfaceAgents.length} surface agent(s) all rendered, no orphans (${layout.label})`);
-}
-
-function checkGate(profile, projectRoot, stateDirs) {
-  const gate = profile && profile.gate;
-  if (!gate || (!gate.deny && !gate.ask && !gate.ask_on_default_branch && !gate.preflight)) {
-    return mk('gate', 'Gate config', 'skip', 'no gate block in the profile');
-  }
-  // One gate config per PROJECT, wherever the installed runtime keeps it. A repo driven from
-  // two agents shares it deliberately — they must not disagree about what is gated.
-  const cfgPath = stateDirs.map(d => path.join(d, 'gate-config.json')).find(exists);
-  const cfg = cfgPath ? readJson(cfgPath) : null;
-  if (!cfg) {
-    return mk('gate', 'Gate config', 'bad',
-      `gate-config.json missing or unreadable (looked in ${stateDirs.map(rel(projectRoot)).join(', ')})`,
-      '/cohorte-init-pipeline   (regenerate gate-config.json from the gate block)');
-  }
-  const drifted = [];
-  if (!sameSet(cfg.deny, gate.deny)) drifted.push('deny');
-  if (!sameSet(cfg.ask, gate.ask)) drifted.push('ask');
-  if (!sameSet(cfg.ask_on_default_branch, gate.ask_on_default_branch)) drifted.push('ask_on_default_branch');
-  if ((cfg.default_branch || 'main') !== (gate.default_branch || 'main')) drifted.push('default_branch');
-  // The phase gate (1.3.0) lives in the same file: a profile that enables
-  // gate.preflight with a pre-1.3.0 gate-config.json silently never fires it.
-  const wantPf = gate.preflight || {};
-  const havePf = (cfg.preflight && typeof cfg.preflight === 'object') ? cfg.preflight : {};
-  if (!!wantPf.enabled !== !!havePf.enabled
-      || !sameSet(wantPf.agents || ['review'], havePf.agents || ['review'])
-      || Number(wantPf.max_age_minutes || 30) !== Number(havePf.max_age_minutes || 30)) {
-    drifted.push('preflight');
-  }
-  if (drifted.length) {
-    return mk('gate', 'Gate config', 'warn',
-      `gate-config.json drifted from PIPELINE.md gate block (${drifted.join(', ')})`,
-      `regenerate ${rel(projectRoot)(cfgPath)} to mirror the gate block`);
-  }
-  const branchGated = (gate.ask_on_default_branch || []).length;
-  return mk('gate', 'Gate config', 'ok',
-    `mirrors the profile (${(gate.deny || []).length} deny, ${(gate.ask || []).length} ask` +
-    (branchGated ? `, ${branchGated} gated on ${gate.default_branch || 'main'}` : '') + ')');
-}
-
-// Local-only pipeline artifacts, named relative to whichever `<state>` dir the installed
-// runtime uses (`.claude` on a Claude install, `.cohorte` on the others). `preflight.ok` is the
-// one that BREAKS things when versioned rather than merely being noise: the stamp names the tree
-// it verified, committing it moves HEAD past that, and the committed copy then rides into every
-// fresh clone and worktree — the phase gate either blocks a clean tree or greens one it never
-// checked.
-function localArtifacts(stateRels) {
-  const out = [];
-  for (const d of stateRels) {
-    out.push({ path: `${d}/preflight.ok`, stamp: true,
-      why: 'the phase-gate stamp — a versioned one breaks the gate in every clone and worktree' });
-    out.push({ path: `${d}/pipeline-metrics.jsonl`,
-      why: 'the per-dispatch metrics sink (local, append-only)' });
-  }
-  out.push({ path: 'specs/reports/',
-    why: 'the /cohorte-review report buffer (derived, regenerated each run)' });
-  return out;
-}
-
-// Does any .gitignore in play cover `rel`? Deliberately literal — it recognizes the exact
-// path, its basename, a trailing-slash dir prefix and a `*.<ext>` glob, which is every form
-// /cohorte-init-pipeline writes. Anything more clever would need a real gitignore engine.
-function ignoreCovers(projectRoot, rel) {
-  const base = rel.replace(/\/$/, '').split('/').pop();
-  const ext = base.includes('.') ? '*' + base.slice(base.lastIndexOf('.')) : null;
-  const files = [
-    path.join(projectRoot, '.gitignore'),
-    path.join(projectRoot, '.claude', '.gitignore'),
-  ];
-  for (const f of files) {
-    const text = readText(f);
-    if (!text) continue;
-    for (let line of text.split('\n')) {
-      line = line.trim();
-      if (!line || line.startsWith('#')) continue;
-      const p = line.replace(/^\/+/, '').replace(/\/+$/, '');
-      if (!p) continue;
-      if (p === rel.replace(/\/$/, '') || p === base || p === ext) return true;
-      // A directory rule covers everything under it (`.claude/` ignores the stamp too).
-      if (rel.startsWith(p + '/')) return true;
-    }
-  }
-  return false;
-}
-
-function checkLocalArtifacts(projectRoot, stateRels) {
-  const artifacts = localArtifacts(stateRels);
-  const unignored = artifacts.filter(a => !ignoreCovers(projectRoot, a.path));
-  if (!unignored.length) {
-    return mk('artifacts', 'Local artifacts', 'ok',
-      `${artifacts.length} local-only artifact path(s) all gitignored`);
-  }
-  const stamp = unignored.find(a => a.stamp);
-  return mk('artifacts', 'Local artifacts', stamp ? 'bad' : 'warn',
-    `not gitignored: ${unignored.map(a => a.path).join(', ')} — ${unignored[0].why}`,
-    `add ${unignored.map(a => a.path).join(' + ')} to .gitignore`
-    + (stamp ? `, then \`git rm --cached --ignore-unmatch ${stamp.path}\`` : ''));
-}
-
-// Gate registrations in one config file. Three shapes across the runtimes that host the hook:
-// Claude Code and Codex use the matcher-group form under `PreToolUse`, Gemini the same shape
-// under `BeforeTool`, Cursor a flat `[{command}]` under `beforeShellExecution`. A registration
-// read with the wrong shape looks absent, which is how a healthy install gets reported broken.
-function gateRegs(settingsPath, event) {
-  const data = readJson(settingsPath);
-  const list = data && data.hooks && Array.isArray(data.hooks[event]) ? data.hooks[event] : [];
-  // Trailing-quote tolerant, like the installers since 1.3.2: the Windows form is
-  // `py "C:\…\gate.py"` — a bare .endsWith() reports every healthy Windows install
-  // as "not registered".
-  // Strip the trailing `--runtime <id>` BEFORE the quotes: the registered command is
-  // `python3 "/path/gate.py" --runtime cursor`, so taking the quotes off first leaves
-  // `…gate.py"` and the match fails — a healthy registration read as missing.
-  const isOurs = (c) => typeof c === 'string'
-    && c.trim().replace(/\s+--runtime[= ]\S+$/, '').replace(/"+$/, '').endsWith('gate.py');
-  return list.filter(e => isOurs(e && e.command)
-    || ((e && e.hooks) || []).some(h => isOurs(h && h.command)));
-}
-
-function checkHooks(projectRoot, globalDir, installMode, all) {
-  // A registration can exist without a discoverable core — a repo whose core lives in a global
-  // dir the caller was not pointed at, or one predating `runtimes.json`. Falling through to
-  // "no runtime installed" there would hide a real double-registration, so assume the Claude
-  // layout: before the adapter it was the only one, and it is the only one whose hook can be
-  // registered outside its own core dir.
-  const known = all.length ? all : [{
-    id: 'claude', label: 'Claude Code', scope: installMode === 'bundled' ? 'project' : 'global',
-    core: path.join(projectRoot, '.claude'),
-    hooksConfig: path.join(projectRoot, '.claude', 'settings.json'),
-    capabilities: { subagents: true, hooks: true, workflows: true },
-  }];
-  const hosts = known.filter(l => l.capabilities && l.capabilities.hooks && l.hooksConfig);
-  const advisory = known.filter(l => !(l.capabilities && l.capabilities.hooks));
-
-  if (!hosts.length) {
-    if (advisory.length) {
-      // OpenCode extends via plugins, not a blocking hook. The gate still runs — the rendered
-      // commands call `gate.py --check` — but it is advisory, and saying ✅ here would claim an
-      // enforcement property that genuinely is not there.
-      return mk('hooks', 'Gate hook', 'warn',
-        `${advisory.map(l => l.label).join(', ')} has no blocking hook — the gate runs as an explicit --check the agent must call`,
-        'nothing to fix; run /cohorte-doctor inside that runtime for the full picture');
-    }
-    return mk('hooks', 'Gate hook', 'warn', 'no runtime installed to register the gate hook against',
-      'cohorte install   (or --global)');
-  }
-
-  const problems = [];
-  const okLines = [];
-  for (const l of hosts.filter((h, i) => hosts.findIndex(other => other.id === h.id) === i)) {
-    const event = (l.id === 'cursor') ? 'beforeShellExecution'
-      : (l.id === 'gemini') ? 'BeforeTool' : 'PreToolUse';
-    // A Claude registration serves the project from EITHER scope: bundled repos get it from
-    // /cohorte-init-pipeline in project settings, but on a machine with the global core it
-    // usually lives (correctly, exactly once) in global settings — warning there would
-    // prescribe a re-registration that double-prompts.
-    const paths = l.id === 'claude'
-      ? (installMode === 'global'
-        ? [path.join(globalDir, 'settings.json'), path.join(projectRoot, '.claude', 'settings.json')]
-        : [path.join(projectRoot, '.claude', 'settings.json'), path.join(globalDir, 'settings.json')])
-      : l.id === 'codex'
-        ? [...new Set([...hosts.filter(h => h.id === 'codex').map(h => h.hooksConfig),
-          path.join(projectRoot, '.codex', 'hooks.json')])]
-        : [l.hooksConfig];
-    const found = paths.map(p2 => ({ path: p2, regs: gateRegs(p2, event) })).filter(f => f.regs.length);
-    if (!found.length) {
-      problems.push(`${l.label}: not registered (${event})`);
-      continue;
-    }
-    const total = found.reduce((n, f) => n + f.regs.length, 0);
-    if (total > 1) {
-      problems.push(`${l.label}: registered ${total}× — it will double-prompt`);
-      continue;
-    }
-    // Validate the regex against the host's real tool names, including dispatch aliases.
-    const matcher = String(found[0].regs[0].matcher || '');
-    const matches = name => {
-      if (!matcher || matcher === '*') return true;
-      try { return new RegExp(matcher).test(name); } catch { return false; }
-    };
-    const dispatch = l.id === 'codex' ? ['spawn_agent', 'Agent'] : ['Task'];
-    if (['claude', 'codex'].includes(l.id)
-        && (!matches('Bash') || !dispatch.some(matches))) {
-      problems.push(`${l.label}: matcher "${matcher}" must cover Bash and ${dispatch.join('/')}`);
-      continue;
-    }
-    okLines.push(`${l.label} (${event}${matcher ? `, ${matcher}` : ''})`);
-  }
-
-  if (problems.length) {
-    // Name the healthy ones too. With several runtimes installed, "Claude Code: not registered"
-    // alone reads as if the gate were off everywhere, when four of five may be fine.
-    const tail = okLines.length ? ` (ok: ${okLines.join(', ')})` : '';
-    return mk('hooks', 'Gate hook', 'warn', problems.join(' · ') + tail,
-      'npm i -g cohorte@latest && cohorte update   (re-registers the gate hook for every installed runtime)');
-  }
-  const tail = advisory.length ? ` · ${advisory.map(l => l.label).join(', ')}: advisory --check only` : '';
-  return mk('hooks', 'Gate hook', 'ok', `registered once for ${okLines.join(', ')}${tail}`);
-}
-
-function checkRetrieval(profile, projectRoot, layout) {
-  const provider = profile && profile.retrieval && profile.retrieval.provider;
-  if (!provider || provider === 'none' || String(provider).startsWith('<')) {
-    return mk('retrieval', 'Code retrieval', 'skip', 'provider: none');
-  }
-  if (layout?.id === 'codex') {
-    const file = '.codex/config.toml';
-    const config = readText(path.join(projectRoot, file)) || '';
-    // Static registration check only, as for the JSON path below. Connectivity requires
-    // a live session. Anchor to table declarations so prose/comments cannot count as wired.
-    const tables = [...config.matchAll(/^\s*\[mcp_servers\.([^\]\n]+)\]\s*(?:#.*)?$/gm)]
-      .map(m => m[1].trim().replace(/^["']|["']$/g, ''));
-    const wired = tables.includes(String(provider));
-    return mk('retrieval', 'Code retrieval', wired ? 'ok' : 'warn', wired
-      ? `provider: ${provider} — table present in ${file} (validity/connectivity need in-session verification)`
-      : `profile says provider: ${provider} but ${file} has no matching server table`,
-    wired ? undefined : '$cohorte-update-pipeline   (merge the project MCP table)');
-  }
-  // The profile alone isn't proof the provider was ever wired: /cohorte-init-pipeline
-  // registers it at project scope in .mcp.json. Verify the entry exists on disk;
-  // live connectivity still needs a session — note it, don't fake green.
-  const mcp = readJson(path.join(projectRoot, '.mcp.json'));
-  const servers = (mcp && mcp.mcpServers) || {};
-  const wired = Object.keys(servers).some(k => k.toLowerCase().includes(String(provider).toLowerCase()));
-  if (!wired) {
-    return mk('retrieval', 'Code retrieval', 'warn',
-      `profile says provider: ${provider} but .mcp.json has no matching server entry`,
-      '/cohorte-init-pipeline or /cohorte-update-pipeline   (re-wire the retrieval provider)');
-  }
-  return mk('retrieval', 'Code retrieval', 'ok',
-    `provider: ${provider} — registered in .mcp.json (connectivity needs /cohorte-doctor in-session)`);
-}
-
-function checkDesign(profile, projectRoot) {
-  const d = profile && profile.design;
-  if (!d || !isTrue(d.enabled)) return mk('design', 'Design system', 'skip', 'design.enabled: false');
-  const targets = [['snapshot_dir', d.snapshot_dir], ['ui_kit_path', d.ui_kit_path], ['tokens_path', d.tokens_path]];
-  const missing = targets.filter(([, p]) => p && !exists(path.join(projectRoot, p))).map(([k]) => k);
-  if (missing.length) {
-    return mk('design', 'Design system', 'warn', `missing path(s): ${missing.join(', ')}`,
-      'create the missing design paths or fix them in PIPELINE.md §design');
-  }
-  return mk('design', 'Design system', 'ok', `provider: ${d.provider} — DS paths present`);
-}
-
-function checkIsolation(profile, projectRoot) {
-  const iso = profile && profile.isolation;
-  if (!iso || !isTrue(iso.enabled)) return mk('isolation', 'Isolation', 'skip', 'isolation.enabled: false');
-  const scripts = ['scripts/new-feature.sh', 'scripts/remove-feature.sh'];
-  const problems = [];
-  for (const rel of scripts) {
-    const txt = readText(path.join(projectRoot, rel));
-    if (txt == null) problems.push(`${rel} missing`);
-    else if (/__[A-Z_]+__/.test(txt)) problems.push(`${rel} has unrendered __TOKEN__`);
-  }
-  if (problems.length) {
-    return mk('isolation', 'Isolation', 'warn', problems.join('; '),
-      '/cohorte-init-pipeline   (re-render the isolation scripts)');
-  }
-  return mk('isolation', 'Isolation', 'ok', 'feature scripts rendered (worktree state not checked here)');
-}
-
-// Workflow variants (review/audit/refactor as deterministic multi-agent runs) are opt-in;
-// the conversational commands stay the default path, so nothing here is ever 'bad'.
-// Whether the session has workflows ENABLED needs a live Claude session — /cohorte-doctor
-// in-session checks that; here we only check what's on disk.
-function checkWorkflows(projectRoot, globalDir, installMode, all) {
-  if (installMode === 'none') return mk('workflows', 'Workflows', 'skip', 'no core installed');
-  // The Workflow engine is Claude Code's; the other runtimes are not shipped the scripts at
-  // all, and reporting them as "missing" would flag a deliberate omission as a defect.
-  const cc = all.find(l => l.id === 'claude');
-  if (!cc) {
-    return mk('workflows', 'Workflows', 'skip',
-      `not available on ${all.map(l => l.label).join(', ') || 'this runtime'} — conversational commands only`);
-  }
-  const dir = path.join(cc.core, 'workflows');
-  const agentsDir = cc.agents;
-  const scripts = ['review.js', 'audit.js', 'refactor.js', 'loop.js'];
-  const missing = scripts.filter(s => !exists(path.join(dir, s)));
-  if (missing.length === scripts.length) {
-    return mk('workflows', 'Workflows', 'warn',
-      'no workflow scripts installed — conversational commands only (the default path)',
-      'cohorte update   (ships core/workflows/)');
-  }
-  if (missing.length) {
-    return mk('workflows', 'Workflows', 'warn', `missing script(s): ${missing.join(', ')}`,
-      'cohorte update   (half-copied core)');
-  }
-  if (!exists(path.join(agentsDir, 'profile-reader.md'))) {
-    return mk('workflows', 'Workflows', 'warn',
-      'scripts present but the profile-reader agent (their phase 0) is missing',
-      'cohorte update   (re-copies the fixed agents)');
-  }
-  return mk('workflows', 'Workflows', 'ok',
-    'scripts + profile-reader installed — opt-in per run; needs Claude Code ≥ 2.1.154 with ' +
-    'workflows enabled (run /cohorte-doctor in-session to check the live half). Inline design ' +
-    '(design.inline) has its own, higher floor of ≥ 2.1.234 — it is a separate prerequisite and ' +
-    'does not gate this check either way');
-}
-
-function scanSpecs(projectRoot) {
-  const dir = path.join(projectRoot, 'specs');
-  const specs = [];
-  let files = [];
-  try { files = fs.readdirSync(dir).filter(f => f.endsWith('.md') && !f.startsWith('_') && !NON_SPEC_FILES.has(f)); }
-  catch { return specs; }
-  for (const f of files) {
-    const txt = readText(path.join(dir, f)) || '';
-    const fm = txt.match(/^---\r?\n([\s\S]*?)\r?\n---/);
-    const body = fm ? fm[1] : '';
-    const get = k => { const m = body.match(new RegExp(`^${k}:\\s*(.*)$`, 'm')); return m ? m[1].trim() : null; };
-    const status = get('status');
-    // Legacy resume state from the retired /cohorte-loop driver. Nothing writes it any more;
-    // it is still read so a spec left mid-flight by an older core still shows why on the board.
-    const pass = parseInt(get('loop_pass'), 10);
-    const phase = get('loop_phase');
-    specs.push({
-      file: f,
-      id: get('feature_id') || f.replace(/\.md$/, ''),
-      title: get('title'),
-      status: status ? status.split('#')[0].trim() : null,
-      branch: get('branch'),
-      loop: pass > 0 ? { pass, phase: phase && phase !== 'done' ? phase : null } : null,
-    });
-  }
-  return specs;
-}
-
-function checkSpecs(specs) {
-  if (!specs.length) return mk('specs', 'Specs', 'skip', 'no specs yet');
-  const bad = specs.filter(s => !VALID_STATUS.includes(s.status));
-  const counts = {};
-  for (const s of specs) counts[s.status || '?'] = (counts[s.status || '?'] || 0) + 1;
-  const summary = VALID_STATUS.filter(st => counts[st]).map(st => `${counts[st]} ${st}`).join(', ');
-  if (bad.length) {
-    return mk('specs', 'Specs', 'warn',
-      `invalid status in: ${bad.map(s => s.file).join(', ')}`,
-      `set status to one of: ${VALID_STATUS.join(' · ')}`);
-  }
-  return mk('specs', 'Specs', 'ok', `${specs.length} spec(s) — ${summary}`);
-}
-
-// --- orchestrator ------------------------------------------------------------
-
-async function state({ projectRoot, globalDir, cliVersion }) {
-  const v = await versions({ projectRoot, globalDir, cliVersion });
-
-  const pipelineMd = readText(path.join(projectRoot, 'PIPELINE.md'));
-  const profile = pipelineMd ? parseProfileBlock(pipelineMd) : null;
-  const specs = scanSpecs(projectRoot);
-
-  // Which coding agent(s) this repo is wired for. Every path-dependent check below reads from
-  // this rather than assuming `.claude/` — on a Cursor-only repo that assumption reported the
-  // core, the agents, the artifacts and the hook as all broken, and every one of them was fine.
-  const all = layouts({ projectRoot, globalDir });
-  const stateAbs = stateDirs(all, projectRoot);
-  const stateRels = stateAbs.map(rel(projectRoot));
-
-  const checks = [
-    checkCore(v),
-    checkProfile(profile, pipelineMd != null),
-    acrossRuntimes(all, layout => checkAgents(profile, projectRoot, layout)),
-    checkGate(profile, projectRoot, stateAbs),
-    checkLocalArtifacts(projectRoot, stateRels),
-    checkHooks(projectRoot, globalDir, v.installMode, all),
-    acrossRuntimes(all, layout => checkRetrieval(profile, projectRoot, layout)),
-    checkDesign(profile, projectRoot),
-    checkIsolation(profile, projectRoot),
-    checkWorkflows(projectRoot, globalDir, v.installMode, all),
-    checkSpecs(specs),
-  ];
-
-  const summary = { ok: 0, warn: 0, bad: 0, skip: 0 };
-  for (const c of checks) summary[c.status]++;
-
-  return {
-    project: projectRoot,
-    runtimes: all.map(l => ({ id: l.id, label: l.label, scope: l.scope,
-      capabilities: l.capabilities, legacy: !!l.legacy })),
-    versions: v,
-    profile: profile ? {
-      name: profile.name,
-      one_liner: profile.one_liner,
-      surfaces: (profile.surfaces || []).map(s => ({
-        key: s.key, label: s.label, agent: s.agent, path: s.path,
-        model: s.model, uses_design: s.uses_design, tools: s.tools,
-      })),
-    } : null,
-    specs,
-    checks,
-    summary,
-  };
-}
-
-module.exports = { state, scanSpecs };