cograph 0.1.19 → 0.1.20

package/dist/{chunk-ZGWB54YO.js → chunk-LSTU5KXM.js}

@@ -285,6 +285,17 @@ var Client = class {
       workers.push(worker());
     }
     await Promise.all(workers);
+    if (kgName) {
+      try {
+        await this.request(
+          "POST",
+          `${this.base()}/explore/kgs/${encodeURIComponent(kgName)}/recompute-stats`,
+          {},
+          15e3
+        );
+      } catch {
+      }
+    }
     return {
       entities_resolved: totalEntities,
       triples_inserted: totalTriples,
@@ -444,4 +455,4 @@ export {
   CographError,
   Client
 };
-//# sourceMappingURL=chunk-ZGWB54YO.js.map
+//# sourceMappingURL=chunk-LSTU5KXM.js.map

package/dist/chunk-LSTU5KXM.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/client.ts"],"sourcesContent":["import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\nimport { readConfig } from \"./config.js\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n  /** Rows per batch for CSV ingest. Default 200. Larger = fewer round-trips\n   *  but higher per-request memory; 200 is a good balance for typical KGs. */\n  batchSize?: number;\n  /** Max number of batches in flight at once. Default 4. Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    // Resolution order for each field: explicit opts → env var → ~/.cograph/config.json\n    // (written by `cograph login`) → built-in default. Reading the config eagerly\n    // is cheap (small JSON file) and lets users skip env vars entirely after login.\n    const cfg = readConfig();\n    this.apiKey = opts.apiKey ?? envVar(\"API_KEY\") ?? cfg.apiKey;\n    const url =\n      opts.baseUrl ?? envVar(\"API_URL\") ?? cfg.apiUrl ?? \"https://api.cograph.cloud\";\n    this.baseUrl = url.replace(/\\/+$/, \"\");\n    this.tenant = opts.tenant ?? envVar(\"TENANT\") ?? cfg.tenant ?? \"demo-tenant\";\n  }\n\n  private headers(): Record<string, string> {\n    const h: Record<string, string> = { \"Content-Type\": \"application/json\" };\n    if (this.apiKey) h[\"X-API-Key\"] = this.apiKey;\n    return h;\n  }\n\n  private base(): string {\n    return `${this.baseUrl}/graphs/${this.tenant}`;\n  }\n\n  /**\n   * Probe the backend to determine reachability and whether endpoints\n   * require an X-API-Key header. Used at shell startup to distinguish\n   * cloud (auth required) from self-hosted open-access deployments.\n   */\n  async healthCheck(): Promise<{\n    ok: boolean;\n    requiresAuth: boolean;\n    url: string;\n  }> {\n    const healthUrl = `${this.baseUrl}/health`;\n    try {\n      const res = await fetch(healthUrl, {\n        signal: AbortSignal.timeout(5000),\n      });\n      if (!res.ok) return { ok: false, requiresAuth: false, url: this.baseUrl };\n    } catch {\n      return { ok: false, requiresAuth: false, url: this.baseUrl };\n    }\n    // Probe whether endpoints require auth by hitting /kgs without X-API-Key.\n    // 401 = requires auth; 200/empty = open access; anything else = treat as\n    // auth-required to be safe.\n    try {\n      const res = await fetch(`${this.base()}/kgs`, {\n        headers: { \"Content-Type\": \"application/json\" },\n        signal: AbortSignal.timeout(5000),\n      });\n      return {\n        ok: true,\n        requiresAuth: res.status === 401,\n        url: this.baseUrl,\n      };\n    } catch {\n      return { ok: true, requiresAuth: true, url: this.baseUrl };\n    }\n  }\n\n  private async request<T = unknown>(\n    method: string,\n    url: string,\n    body?: unknown,\n    timeoutMs: number = 120_000,\n  ): Promise<T> {\n    const controller = new AbortController();\n    const timer = setTimeout(() => controller.abort(), timeoutMs);\n    let res: Response;\n    try {\n      res = await fetch(url, {\n        method,\n        headers: this.headers(),\n        body: body === undefined ? undefined : JSON.stringify(body),\n        signal: controller.signal,\n      });\n    } catch (err) {\n      clearTimeout(timer);\n      if (err instanceof Error && err.name === \"AbortError\") {\n        throw new CographError(`Request to ${url} timed out after ${timeoutMs}ms`);\n      }\n      throw new CographError(\n        `Network error contacting ${url}: ${err instanceof Error ? err.message : String(err)}`,\n      );\n    }\n    clearTimeout(timer);\n\n    if (!res.ok) {\n      let text = \"\";\n      try {\n        text = await res.text();\n      } catch {\n        // ignore\n      }\n      throw new CographError(`HTTP ${res.status}: ${text}`, {\n        status: res.status,\n        body: text,\n      });\n    }\n\n    // 204 No Content\n    if (res.status === 204) return undefined as T;\n\n    const ct = res.headers.get(\"content-type\") ?? \"\";\n    if (ct.includes(\"application/json\")) {\n      return (await res.json()) as T;\n    }\n    // fall back to text\n    const text = await res.text();\n    try {\n      return JSON.parse(text) as T;\n    } catch {\n      return text as unknown as T;\n    }\n  }\n\n  /**\n   * Ingest a file path or raw text into a knowledge graph.\n   *\n   * If `pathOrText` points to an existing file, its contents are read and the\n   * format is inferred from the extension (.csv, .json, .txt) unless\n   * `contentType` is given. CSV files use the two-step schema-inference + row\n   * mapping flow.\n   */\n  async ingest(\n    pathOrText: string,\n    opts: IngestOptions = {},\n  ): Promise<Record<string, unknown>> {\n    let content: string;\n    let fmt: string;\n\n    let isFile = false;\n    try {\n      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();\n    } catch {\n      isFile = false;\n    }\n\n    if (isFile) {\n      const ext = extname(pathOrText).toLowerCase();\n      if (ext === \".pdf\") {\n        throw new CographError(\n          \"PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API.\",\n        );\n      }\n      content = readFileSync(pathOrText, \"utf-8\");\n      fmt = opts.contentType ?? EXT_FORMAT[ext] ?? \"text\";\n      if (fmt === \"csv\") {\n        return this.ingestCsv(content, opts);\n      }\n    } else {\n      content = pathOrText;\n      fmt = opts.contentType ?? \"text\";\n    }\n\n    const body: Record<string, unknown> = {\n      content,\n      content_type: fmt,\n      source: \"client\",\n    };\n    if (opts.kg) body.kg_name = opts.kg;\n    return this.request(\"POST\", `${this.base()}/ingest`, body, 120_000);\n  }\n\n  private async ingestCsv(\n    content: string,\n    opts: IngestOptions,\n  ): Promise<Record<string, unknown>> {\n    const kgName = opts.kg;\n    const batchSize = opts.batchSize ?? 200;\n    const concurrency = opts.concurrency ?? 4;\n\n    const rows = parseCsv(content);\n    if (rows.length === 0) throw new CographError(\"CSV is empty\");\n    const headers = Object.keys(rows[0]!);\n\n    // Pick the rows with the most non-empty fields for schema inference.\n    // Mostly-empty leading rows (e.g. soft-deleted records) otherwise feed\n    // the LLM a near-blank sample and reliably produce malformed JSON.\n    // Stable on ties — original order preserved within equal scores.\n    const sampleRows = rows\n      .map((row, idx) => ({\n        row,\n        idx,\n        score: Object.values(row).filter(\n          (v) => v != null && String(v).trim() !== \"\",\n        ).length,\n      }))\n      .sort((a, b) => b.score - a.score || a.idx - b.idx)\n      .slice(0, 10)\n      .map((s) => s.row);\n\n    const schemaBody = {\n      headers,\n      sample_rows: sampleRows,\n      total_rows: rows.length,\n    };\n    const mapping = await this.request<Record<string, unknown>>(\n      \"POST\",\n      `${this.base()}/ingest/csv/schema`,\n      schemaBody,\n      300_000,\n    );\n\n    // Slice rows into batches up front so we can fire them off in a\n    // bounded worker pool. Sequential 50-row batches over 891 rows took\n    // ~60s end-to-end (18 round-trips); 200-row batches × 4 in flight\n    // brings that to ~5s on the same backend.\n    const batches: Array<Record<string, string>[]> = [];\n    for (let i = 0; i < rows.length; i += batchSize) {\n      batches.push(rows.slice(i, i + batchSize));\n    }\n\n    let totalEntities = 0;\n    let totalTriples = 0;\n    let rowsProcessed = 0;\n    let nextBatch = 0;\n\n    const postBatch = async (batch: Record<string, string>[]) => {\n      const body: Record<string, unknown> = {\n        mapping,\n        rows: batch,\n        source: \"client\",\n      };\n      if (kgName) body.kg_name = kgName;\n      const result = await this.request<{\n        entities_resolved?: number;\n        triples_inserted?: number;\n      }>(\"POST\", `${this.base()}/ingest/csv/rows`, body, 300_000);\n      return {\n        entities: result.entities_resolved ?? 0,\n        triples: result.triples_inserted ?? 0,\n        size: batch.length,\n      };\n    };\n\n    const worker = async (): Promise<void> => {\n      while (true) {\n        const idx = nextBatch++;\n        if (idx >= batches.length) return;\n        const r = await postBatch(batches[idx]!);\n        totalEntities += r.entities;\n        totalTriples += r.triples;\n        rowsProcessed += r.size;\n        opts.onProgress?.({\n          rowsProcessed,\n          totalRows: rows.length,\n          entitiesResolved: totalEntities,\n          triplesInserted: totalTriples,\n        });\n      }\n    };\n\n    const workers: Array<Promise<void>> = [];\n    for (let i = 0; i < Math.min(concurrency, batches.length); i++) {\n      workers.push(worker());\n    }\n    await Promise.all(workers);\n\n    // All batches are in — kick off a background recompute of the Explorer\n    // type-stats for this KG so type-detail views load instantly. The endpoint\n    // returns immediately (the scan runs server-side in the background); this\n    // is best-effort and never fails the ingest.\n    if (kgName) {\n      try {\n        await this.request(\n          \"POST\",\n          `${this.base()}/explore/kgs/${encodeURIComponent(kgName)}/recompute-stats`,\n          {},\n          15_000,\n        );\n      } catch {\n        // non-fatal — stats fall back to a live scan until the next recompute\n      }\n    }\n\n    return {\n      entities_resolved: totalEntities,\n      triples_inserted: totalTriples,\n      mapping,\n    };\n  }\n\n  /** Ask a natural language question and return the parsed response. */\n  async ask(\n    question: string,\n    opts: AskOptions = {},\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { question };\n    if (opts.kg) body.kg_name = opts.kg;\n    if (opts.model) body.model = opts.model;\n    return this.request(\"POST\", `${this.base()}/ask`, body, 60_000);\n  }\n\n  /** List all knowledge graphs for the current tenant. */\n  async listKgs(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs`,\n      undefined,\n      15_000,\n    );\n    if (Array.isArray(data)) return data as Array<Record<string, unknown>>;\n    if (data && typeof data === \"object\" && \"kgs\" in data) {\n      const kgs = (data as { kgs?: unknown }).kgs;\n      if (Array.isArray(kgs)) return kgs as Array<Record<string, unknown>>;\n    }\n    return [];\n  }\n\n  /** Create a knowledge graph. */\n  async createKg(\n    name: string,\n    description?: string,\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { name };\n    if (description) body.description = description;\n    return this.request(\"POST\", `${this.base()}/kgs`, body, 15_000);\n  }\n\n  /** Delete a knowledge graph by name. */\n  async deleteKg(name: string): Promise<Record<string, unknown>> {\n    return this.request(\n      \"DELETE\",\n      `${this.base()}/kgs/${encodeURIComponent(name)}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** List ontology types. */\n  async ontologyTypes(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/ontology/types`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n\n  /** Per-KG type counts: every type with ≥1 instance, sorted desc. */\n  async typeCounts(kg: string): Promise<TypeCount[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/type-counts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as TypeCount[]) : [];\n  }\n\n  /** Plan + run an enrichment job. Returns immediately with the job id. */\n  async enrichRun(req: EnrichRequest): Promise<EnrichJobCreate> {\n    return this.request<EnrichJobCreate>(\n      \"POST\",\n      `${this.base()}/enrich/jobs`,\n      req,\n      30_000,\n    );\n  }\n\n  /** List recent enrichment jobs for the current tenant. */\n  async enrichJobs(): Promise<JobSummary[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as JobSummary[]) : [];\n  }\n\n  /** Fetch a single enrichment job (with truncated results). */\n  async enrichJob(jobId: string): Promise<EnrichJob> {\n    return this.request<EnrichJob>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Fetch the conflict review queue for a job. */\n  async enrichConflicts(jobId: string): Promise<ConflictReview[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/conflicts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as ConflictReview[]) : [];\n  }\n\n  /** Apply a set of conflict review decisions to a job. */\n  async enrichApply(\n    jobId: string,\n    decisions: ConflictReview[],\n  ): Promise<{ applied: number }> {\n    return this.request<{ applied: number }>(\n      \"POST\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/apply`,\n      { decisions },\n      60_000,\n    );\n  }\n\n  /** Cancel an enrichment job. */\n  async enrichCancel(jobId: string): Promise<void> {\n    await this.request<void>(\n      \"DELETE\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Per-type breakdown for one type in one KG: definition + counts + samples.\n   *\n   * System predicates (rdfs:label, ingested_at, source) are hidden by default\n   * — they're attached to every entity at 100% and drown out the columns the\n   * user cares about. Pass `includeSystem: true` to see them. */\n  async typeUsage(\n    kg: string,\n    typeName: string,\n    opts: { includeSystem?: boolean } = {},\n  ): Promise<TypeUsage> {\n    const qs = opts.includeSystem ? \"?include_system=true\" : \"\";\n    return this.request<TypeUsage>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/usage${qs}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Explorer summary for a type — like typeUsage but adds coverage_pct + avg_degree. */\n  async typeSummary(kg: string, typeName: string): Promise<TypeSummary> {\n    return this.request<TypeSummary>(\n      \"GET\",\n      `${this.base()}/explore/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/summary`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Search types or attributes by name substring within a KG. */\n  async exploreSearch(\n    kg: string,\n    q: string,\n    kind: \"type\" | \"attr\" = \"type\",\n  ): Promise<Array<Record<string, unknown>>> {\n    const qs = new URLSearchParams({ kg, q, kind }).toString();\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/explore/search?${qs}`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n}\n\nexport interface TypeCount {\n  name: string;\n  entity_count: number;\n}\n\nexport interface AttributeUsage {\n  name: string;\n  datatype: string;\n  count: number;\n}\n\nexport interface RelationshipUsage {\n  name: string;\n  target_type: string | null;\n  count: number;\n}\n\nexport interface EntitySample {\n  uri: string;\n  label: string;\n}\n\nexport interface TypeUsage {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeUsage[];\n  relationships: RelationshipUsage[];\n  samples: EntitySample[];\n}\n\nexport interface AttributeSummary {\n  name: string;\n  predicate_uri: string;\n  datatype: string;\n  count: number;\n  coverage_pct: number;\n}\n\nexport interface RelationshipSummary {\n  name: string;\n  predicate_uri: string;\n  target_type: string | null;\n  count: number;\n  coverage_pct: number;\n  avg_degree: number;\n}\n\nexport interface TypeSummary {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeSummary[];\n  relationships: RelationshipSummary[];\n}\n\nexport type EnrichmentTier = \"lite\" | \"base\" | \"core\" | \"pro\";\nexport type JobStatus =\n  | \"queued\"\n  | \"running\"\n  | \"review\"\n  | \"applied\"\n  | \"cancelled\"\n  | \"failed\";\nexport type ConflictPolicy = \"skip\" | \"verify\" | \"overwrite\" | \"stage\";\nexport type RowAction =\n  | \"filled\"\n  | \"verified\"\n  | \"conflict\"\n  | \"skipped\"\n  | \"no_match\";\nexport type ReviewDecision = \"accept\" | \"reject\" | \"skip\";\n\nexport interface EnrichRequest {\n  type_name: string;\n  attributes: string[];\n  tier?: EnrichmentTier;\n  kg_name: string;\n  conflict_policy?: ConflictPolicy;\n  confidence_min?: number;\n  limit?: number;\n}\n\nexport interface EnrichJobCreate {\n  job_id: string;\n  status: JobStatus;\n  estimated_cost_usd: number;\n  total_entities: number;\n}\n\nexport interface Verdict {\n  value: string;\n  confidence: number;\n  source: string;\n  source_url?: string | null;\n  reasoning?: string | null;\n}\n\nexport interface JobProgress {\n  total: number;\n  processed: number;\n  filled: number;\n  verified: number;\n  conflicts: number;\n  skipped: number;\n  cache_hits: number;\n}\n\nexport interface RowResult {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string | null;\n  verdict: Verdict | null;\n  action: RowAction;\n}\n\nexport interface JobSummary {\n  id: string;\n  tenant_id: string;\n  kg_name: string;\n  type_name: string;\n  attributes: string[];\n  tier: EnrichmentTier;\n  status: JobStatus;\n  progress: JobProgress;\n  created_at: string;\n  started_at?: string | null;\n  completed_at?: string | null;\n  conflict_policy: ConflictPolicy;\n  confidence_min: number;\n  error?: string | null;\n}\n\nexport interface EnrichJob extends JobSummary {\n  results?: RowResult[];\n  limit?: number | null;\n}\n\nexport interface ConflictReview {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string;\n  proposed: Verdict;\n  decision?: ReviewDecision | 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package/dist/cli.js

@@ -2,7 +2,7 @@
 import {
   Client,
   CographError
-} from "./chunk-ZGWB54YO.js";
+} from "./chunk-LSTU5KXM.js";
 import "./chunk-7VVBEUZQ.js";
 
 // src/cli.ts
@@ -48,7 +48,7 @@ async function confirm(prompt) {
 }
 var program = new Command();
 program.name("cograph").description("Cograph Knowledge Graph CLI").version(pkgVersion()).option("--local", "Use http://localhost:8000 and skip login (self-hosted)").option("--no-login", "Skip browser login (assume open-access backend)").action(async (opts) => {
-  const { runShell } = await import("./shell-TP6RVSQ2.js");
+  const { runShell } = await import("./shell-VBSUMN3L.js");
   await runShell({
     local: opts.local,
     // commander's --no-login inverts: opts.login === false when flag passed.
@@ -364,7 +364,7 @@ program.command("login").description("Sign in via your browser and save an API k
 program.command("shell").description("Start an interactive REPL").option("--kg <name>", "Knowledge graph to use").option("--local", "Use http://localhost:8000 and skip login (self-hosted)").option("--no-login", "Skip browser login (assume open-access backend)").action(
   async (opts) => {
     const parentOpts = program.opts();
-    const { runShell } = await import("./shell-TP6RVSQ2.js");
+    const { runShell } = await import("./shell-VBSUMN3L.js");
     await runShell({
       kg: opts.kg,
       local: opts.local || parentOpts.local,

package/dist/index.js

@@ -306,6 +306,17 @@ var Client = class {
       workers.push(worker());
     }
     await Promise.all(workers);
+    if (kgName) {
+      try {
+        await this.request(
+          "POST",
+          `${this.base()}/explore/kgs/${encodeURIComponent(kgName)}/recompute-stats`,
+          {},
+          15e3
+        );
+      } catch {
+      }
+    }
     return {
       entities_resolved: totalEntities,
       triples_inserted: totalTriples,

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/client.ts","../src/config.ts"],"sourcesContent":["import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\nimport { readConfig } from \"./config.js\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n  /** Rows per batch for CSV ingest. Default 200. Larger = fewer round-trips\n   *  but higher per-request memory; 200 is a good balance for typical KGs. */\n  batchSize?: number;\n  /** Max number of batches in flight at once. Default 4. Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    // Resolution order for each field: explicit opts → env var → ~/.cograph/config.json\n    // (written by `cograph login`) → built-in default. Reading the config eagerly\n    // is cheap (small JSON file) and lets users skip env vars entirely after login.\n    const cfg = readConfig();\n    this.apiKey = opts.apiKey ?? envVar(\"API_KEY\") ?? cfg.apiKey;\n    const url =\n      opts.baseUrl ?? envVar(\"API_URL\") ?? cfg.apiUrl ?? \"https://api.cograph.cloud\";\n    this.baseUrl = url.replace(/\\/+$/, \"\");\n    this.tenant = opts.tenant ?? envVar(\"TENANT\") ?? cfg.tenant ?? \"demo-tenant\";\n  }\n\n  private headers(): Record<string, string> {\n    const h: Record<string, string> = { \"Content-Type\": \"application/json\" };\n    if (this.apiKey) h[\"X-API-Key\"] = this.apiKey;\n    return h;\n  }\n\n  private base(): string {\n    return `${this.baseUrl}/graphs/${this.tenant}`;\n  }\n\n  /**\n   * Probe the backend to determine reachability and whether endpoints\n   * require an X-API-Key header. Used at shell startup to distinguish\n   * cloud (auth required) from self-hosted open-access deployments.\n   */\n  async healthCheck(): Promise<{\n    ok: boolean;\n    requiresAuth: boolean;\n    url: string;\n  }> {\n    const healthUrl = `${this.baseUrl}/health`;\n    try {\n      const res = await fetch(healthUrl, {\n        signal: AbortSignal.timeout(5000),\n      });\n      if (!res.ok) return { ok: false, requiresAuth: false, url: this.baseUrl };\n    } catch {\n      return { ok: false, requiresAuth: false, url: this.baseUrl };\n    }\n    // Probe whether endpoints require auth by hitting /kgs without X-API-Key.\n    // 401 = requires auth; 200/empty = open access; anything else = treat as\n    // auth-required to be safe.\n    try {\n      const res = await fetch(`${this.base()}/kgs`, {\n        headers: { \"Content-Type\": \"application/json\" },\n        signal: AbortSignal.timeout(5000),\n      });\n      return {\n        ok: true,\n        requiresAuth: res.status === 401,\n        url: this.baseUrl,\n      };\n    } catch {\n      return { ok: true, requiresAuth: true, url: this.baseUrl };\n    }\n  }\n\n  private async request<T = unknown>(\n    method: string,\n    url: string,\n    body?: unknown,\n    timeoutMs: number = 120_000,\n  ): Promise<T> {\n    const controller = new AbortController();\n    const timer = setTimeout(() => controller.abort(), timeoutMs);\n    let res: Response;\n    try {\n      res = await fetch(url, {\n        method,\n        headers: this.headers(),\n        body: body === undefined ? undefined : JSON.stringify(body),\n        signal: controller.signal,\n      });\n    } catch (err) {\n      clearTimeout(timer);\n      if (err instanceof Error && err.name === \"AbortError\") {\n        throw new CographError(`Request to ${url} timed out after ${timeoutMs}ms`);\n      }\n      throw new CographError(\n        `Network error contacting ${url}: ${err instanceof Error ? err.message : String(err)}`,\n      );\n    }\n    clearTimeout(timer);\n\n    if (!res.ok) {\n      let text = \"\";\n      try {\n        text = await res.text();\n      } catch {\n        // ignore\n      }\n      throw new CographError(`HTTP ${res.status}: ${text}`, {\n        status: res.status,\n        body: text,\n      });\n    }\n\n    // 204 No Content\n    if (res.status === 204) return undefined as T;\n\n    const ct = res.headers.get(\"content-type\") ?? \"\";\n    if (ct.includes(\"application/json\")) {\n      return (await res.json()) as T;\n    }\n    // fall back to text\n    const text = await res.text();\n    try {\n      return JSON.parse(text) as T;\n    } catch {\n      return text as unknown as T;\n    }\n  }\n\n  /**\n   * Ingest a file path or raw text into a knowledge graph.\n   *\n   * If `pathOrText` points to an existing file, its contents are read and the\n   * format is inferred from the extension (.csv, .json, .txt) unless\n   * `contentType` is given. CSV files use the two-step schema-inference + row\n   * mapping flow.\n   */\n  async ingest(\n    pathOrText: string,\n    opts: IngestOptions = {},\n  ): Promise<Record<string, unknown>> {\n    let content: string;\n    let fmt: string;\n\n    let isFile = false;\n    try {\n      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();\n    } catch {\n      isFile = false;\n    }\n\n    if (isFile) {\n      const ext = extname(pathOrText).toLowerCase();\n      if (ext === \".pdf\") {\n        throw new CographError(\n          \"PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API.\",\n        );\n      }\n      content = readFileSync(pathOrText, \"utf-8\");\n      fmt = opts.contentType ?? EXT_FORMAT[ext] ?? \"text\";\n      if (fmt === \"csv\") {\n        return this.ingestCsv(content, opts);\n      }\n    } else {\n      content = pathOrText;\n      fmt = opts.contentType ?? \"text\";\n    }\n\n    const body: Record<string, unknown> = {\n      content,\n      content_type: fmt,\n      source: \"client\",\n    };\n    if (opts.kg) body.kg_name = opts.kg;\n    return this.request(\"POST\", `${this.base()}/ingest`, body, 120_000);\n  }\n\n  private async ingestCsv(\n    content: string,\n    opts: IngestOptions,\n  ): Promise<Record<string, unknown>> {\n    const kgName = opts.kg;\n    const batchSize = opts.batchSize ?? 200;\n    const concurrency = opts.concurrency ?? 4;\n\n    const rows = parseCsv(content);\n    if (rows.length === 0) throw new CographError(\"CSV is empty\");\n    const headers = Object.keys(rows[0]!);\n\n    // Pick the rows with the most non-empty fields for schema inference.\n    // Mostly-empty leading rows (e.g. soft-deleted records) otherwise feed\n    // the LLM a near-blank sample and reliably produce malformed JSON.\n    // Stable on ties — original order preserved within equal scores.\n    const sampleRows = rows\n      .map((row, idx) => ({\n        row,\n        idx,\n        score: Object.values(row).filter(\n          (v) => v != null && String(v).trim() !== \"\",\n        ).length,\n      }))\n      .sort((a, b) => b.score - a.score || a.idx - b.idx)\n      .slice(0, 10)\n      .map((s) => s.row);\n\n    const schemaBody = {\n      headers,\n      sample_rows: sampleRows,\n      total_rows: rows.length,\n    };\n    const mapping = await this.request<Record<string, unknown>>(\n      \"POST\",\n      `${this.base()}/ingest/csv/schema`,\n      schemaBody,\n      300_000,\n    );\n\n    // Slice rows into batches up front so we can fire them off in a\n    // bounded worker pool. Sequential 50-row batches over 891 rows took\n    // ~60s end-to-end (18 round-trips); 200-row batches × 4 in flight\n    // brings that to ~5s on the same backend.\n    const batches: Array<Record<string, string>[]> = [];\n    for (let i = 0; i < rows.length; i += batchSize) {\n      batches.push(rows.slice(i, i + batchSize));\n    }\n\n    let totalEntities = 0;\n    let totalTriples = 0;\n    let rowsProcessed = 0;\n    let nextBatch = 0;\n\n    const postBatch = async (batch: Record<string, string>[]) => {\n      const body: Record<string, unknown> = {\n        mapping,\n        rows: batch,\n        source: \"client\",\n      };\n      if (kgName) body.kg_name = kgName;\n      const result = await this.request<{\n        entities_resolved?: number;\n        triples_inserted?: number;\n      }>(\"POST\", `${this.base()}/ingest/csv/rows`, body, 300_000);\n      return {\n        entities: result.entities_resolved ?? 0,\n        triples: result.triples_inserted ?? 0,\n        size: batch.length,\n      };\n    };\n\n    const worker = async (): Promise<void> => {\n      while (true) {\n        const idx = nextBatch++;\n        if (idx >= batches.length) return;\n        const r = await postBatch(batches[idx]!);\n        totalEntities += r.entities;\n        totalTriples += r.triples;\n        rowsProcessed += r.size;\n        opts.onProgress?.({\n          rowsProcessed,\n          totalRows: rows.length,\n          entitiesResolved: totalEntities,\n          triplesInserted: totalTriples,\n        });\n      }\n    };\n\n    const workers: Array<Promise<void>> = [];\n    for (let i = 0; i < Math.min(concurrency, batches.length); i++) {\n      workers.push(worker());\n    }\n    await Promise.all(workers);\n\n    return {\n      entities_resolved: totalEntities,\n      triples_inserted: totalTriples,\n      mapping,\n    };\n  }\n\n  /** Ask a natural language question and return the parsed response. */\n  async ask(\n    question: string,\n    opts: AskOptions = {},\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { question };\n    if (opts.kg) body.kg_name = opts.kg;\n    if (opts.model) body.model = opts.model;\n    return this.request(\"POST\", `${this.base()}/ask`, body, 60_000);\n  }\n\n  /** List all knowledge graphs for the current tenant. */\n  async listKgs(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs`,\n      undefined,\n      15_000,\n    );\n    if (Array.isArray(data)) return data as Array<Record<string, unknown>>;\n    if (data && typeof data === \"object\" && \"kgs\" in data) {\n      const kgs = (data as { kgs?: unknown }).kgs;\n      if (Array.isArray(kgs)) return kgs as Array<Record<string, unknown>>;\n    }\n    return [];\n  }\n\n  /** Create a knowledge graph. */\n  async createKg(\n    name: string,\n    description?: string,\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { name };\n    if (description) body.description = description;\n    return this.request(\"POST\", `${this.base()}/kgs`, body, 15_000);\n  }\n\n  /** Delete a knowledge graph by name. */\n  async deleteKg(name: string): Promise<Record<string, unknown>> {\n    return this.request(\n      \"DELETE\",\n      `${this.base()}/kgs/${encodeURIComponent(name)}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** List ontology types. */\n  async ontologyTypes(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/ontology/types`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n\n  /** Per-KG type counts: every type with ≥1 instance, sorted desc. */\n  async typeCounts(kg: string): Promise<TypeCount[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/type-counts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as TypeCount[]) : [];\n  }\n\n  /** Plan + run an enrichment job. Returns immediately with the job id. */\n  async enrichRun(req: EnrichRequest): Promise<EnrichJobCreate> {\n    return this.request<EnrichJobCreate>(\n      \"POST\",\n      `${this.base()}/enrich/jobs`,\n      req,\n      30_000,\n    );\n  }\n\n  /** List recent enrichment jobs for the current tenant. */\n  async enrichJobs(): Promise<JobSummary[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as JobSummary[]) : [];\n  }\n\n  /** Fetch a single enrichment job (with truncated results). */\n  async enrichJob(jobId: string): Promise<EnrichJob> {\n    return this.request<EnrichJob>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Fetch the conflict review queue for a job. */\n  async enrichConflicts(jobId: string): Promise<ConflictReview[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/conflicts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as ConflictReview[]) : [];\n  }\n\n  /** Apply a set of conflict review decisions to a job. */\n  async enrichApply(\n    jobId: string,\n    decisions: ConflictReview[],\n  ): Promise<{ applied: number }> {\n    return this.request<{ applied: number }>(\n      \"POST\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/apply`,\n      { decisions },\n      60_000,\n    );\n  }\n\n  /** Cancel an enrichment job. */\n  async enrichCancel(jobId: string): Promise<void> {\n    await this.request<void>(\n      \"DELETE\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Per-type breakdown for one type in one KG: definition + counts + samples.\n   *\n   * System predicates (rdfs:label, ingested_at, source) are hidden by default\n   * — they're attached to every entity at 100% and drown out the columns the\n   * user cares about. Pass `includeSystem: true` to see them. */\n  async typeUsage(\n    kg: string,\n    typeName: string,\n    opts: { includeSystem?: boolean } = {},\n  ): Promise<TypeUsage> {\n    const qs = opts.includeSystem ? \"?include_system=true\" : \"\";\n    return this.request<TypeUsage>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/usage${qs}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Explorer summary for a type — like typeUsage but adds coverage_pct + avg_degree. */\n  async typeSummary(kg: string, typeName: string): Promise<TypeSummary> {\n    return this.request<TypeSummary>(\n      \"GET\",\n      `${this.base()}/explore/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/summary`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Search types or attributes by name substring within a KG. */\n  async exploreSearch(\n    kg: string,\n    q: string,\n    kind: \"type\" | \"attr\" = \"type\",\n  ): Promise<Array<Record<string, unknown>>> {\n    const qs = new URLSearchParams({ kg, q, kind }).toString();\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/explore/search?${qs}`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n}\n\nexport interface TypeCount {\n  name: string;\n  entity_count: number;\n}\n\nexport interface AttributeUsage {\n  name: string;\n  datatype: string;\n  count: number;\n}\n\nexport interface RelationshipUsage {\n  name: string;\n  target_type: string | null;\n  count: number;\n}\n\nexport interface EntitySample {\n  uri: string;\n  label: string;\n}\n\nexport interface TypeUsage {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeUsage[];\n  relationships: RelationshipUsage[];\n  samples: EntitySample[];\n}\n\nexport interface AttributeSummary {\n  name: string;\n  predicate_uri: string;\n  datatype: string;\n  count: number;\n  coverage_pct: number;\n}\n\nexport interface RelationshipSummary {\n  name: string;\n  predicate_uri: string;\n  target_type: string | null;\n  count: number;\n  coverage_pct: number;\n  avg_degree: number;\n}\n\nexport interface TypeSummary {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeSummary[];\n  relationships: RelationshipSummary[];\n}\n\nexport type EnrichmentTier = \"lite\" | \"base\" | \"core\" | \"pro\";\nexport type JobStatus =\n  | \"queued\"\n  | \"running\"\n  | \"review\"\n  | \"applied\"\n  | \"cancelled\"\n  | \"failed\";\nexport type ConflictPolicy = \"skip\" | \"verify\" | \"overwrite\" | \"stage\";\nexport type RowAction =\n  | \"filled\"\n  | \"verified\"\n  | \"conflict\"\n  | \"skipped\"\n  | \"no_match\";\nexport type ReviewDecision = \"accept\" | \"reject\" | \"skip\";\n\nexport interface EnrichRequest {\n  type_name: string;\n  attributes: string[];\n  tier?: EnrichmentTier;\n  kg_name: string;\n  conflict_policy?: ConflictPolicy;\n  confidence_min?: number;\n  limit?: number;\n}\n\nexport interface EnrichJobCreate {\n  job_id: string;\n  status: JobStatus;\n  estimated_cost_usd: number;\n  total_entities: number;\n}\n\nexport interface Verdict {\n  value: string;\n  confidence: number;\n  source: string;\n  source_url?: string | null;\n  reasoning?: string | null;\n}\n\nexport interface JobProgress {\n  total: number;\n  processed: number;\n  filled: number;\n  verified: number;\n  conflicts: number;\n  skipped: number;\n  cache_hits: number;\n}\n\nexport interface RowResult {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string | null;\n  verdict: Verdict | null;\n  action: RowAction;\n}\n\nexport interface JobSummary {\n  id: string;\n  tenant_id: string;\n  kg_name: string;\n  type_name: string;\n  attributes: string[];\n  tier: EnrichmentTier;\n  status: JobStatus;\n  progress: JobProgress;\n  created_at: string;\n  started_at?: string | null;\n  completed_at?: string | null;\n  conflict_policy: ConflictPolicy;\n  confidence_min: number;\n  error?: string | null;\n}\n\nexport interface EnrichJob extends JobSummary {\n  results?: RowResult[];\n  limit?: number | null;\n}\n\nexport interface ConflictReview {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string;\n  proposed: Verdict;\n  decision?: ReviewDecision | null;\n}\n","import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { existsSync, mkdirSync, readFileSync, writeFileSync, chmodSync } from \"node:fs\";\n\nexport interface CographConfig {\n  apiKey?: string;\n  apiUrl?: string;\n  tenant?: string;\n  email?: string;\n}\n\nfunction configDir(): string {\n  return join(homedir(), \".cograph\");\n}\n\nfunction configPath(): string {\n  return join(configDir(), \"config.json\");\n}\n\n/**\n * Read `~/.cograph/config.json`. Returns an empty object if the file is\n * missing or unreadable — callers should treat fields as optional.\n */\nexport function readConfig(): CographConfig {\n  const path = configPath();\n  if (!existsSync(path)) return {};\n  try {\n    const raw = readFileSync(path, \"utf-8\");\n    const parsed = JSON.parse(raw) as unknown;\n    if (parsed && typeof parsed === \"object\") {\n      return parsed as CographConfig;\n    }\n  } catch {\n    // Corrupt or unreadable; behave as if absent so a fresh login can rewrite.\n  }\n  return {};\n}\n\n/**\n * Write `~/.cograph/config.json` with `chmod 600`. Creates the directory if\n * needed. Merges with the existing config so callers can update one field\n * without clobbering the others.\n */\nexport function writeConfig(patch: CographConfig): void {\n  const dir = configDir();\n  if (!existsSync(dir)) {\n    mkdirSync(dir, { recursive: true, mode: 0o700 });\n  }\n  const merged = { ...readConfig(), ...patch };\n  const path = configPath();\n  writeFileSync(path, JSON.stringify(merged, null, 2) + \"\\n\", \"utf-8\");\n  try {\n    chmodSync(path, 0o600);\n  } catch {\n    // best-effort; some filesystems (e.g., FAT) don't honor chmod\n  }\n}\n\nexport function configPathForDisplay(): string {\n  return 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Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    // Resolution order for each field: explicit opts → env var → ~/.cograph/config.json\n    // (written by `cograph login`) → built-in default. Reading the config eagerly\n    // is cheap (small JSON file) and lets users skip env vars entirely after login.\n    const cfg = readConfig();\n    this.apiKey = opts.apiKey ?? envVar(\"API_KEY\") ?? cfg.apiKey;\n    const url =\n      opts.baseUrl ?? envVar(\"API_URL\") ?? cfg.apiUrl ?? \"https://api.cograph.cloud\";\n    this.baseUrl = url.replace(/\\/+$/, \"\");\n    this.tenant = opts.tenant ?? envVar(\"TENANT\") ?? cfg.tenant ?? \"demo-tenant\";\n  }\n\n  private headers(): Record<string, string> {\n    const h: Record<string, string> = { \"Content-Type\": \"application/json\" };\n    if (this.apiKey) h[\"X-API-Key\"] = this.apiKey;\n    return h;\n  }\n\n  private base(): string {\n    return `${this.baseUrl}/graphs/${this.tenant}`;\n  }\n\n  /**\n   * Probe the backend to determine reachability and whether endpoints\n   * require an X-API-Key header. Used at shell startup to distinguish\n   * cloud (auth required) from self-hosted open-access deployments.\n   */\n  async healthCheck(): Promise<{\n    ok: boolean;\n    requiresAuth: boolean;\n    url: string;\n  }> {\n    const healthUrl = `${this.baseUrl}/health`;\n    try {\n      const res = await fetch(healthUrl, {\n        signal: AbortSignal.timeout(5000),\n      });\n      if (!res.ok) return { ok: false, requiresAuth: false, url: this.baseUrl };\n    } catch {\n      return { ok: false, requiresAuth: false, url: this.baseUrl };\n    }\n    // Probe whether endpoints require auth by hitting /kgs without X-API-Key.\n    // 401 = requires auth; 200/empty = open access; anything else = treat as\n    // auth-required to be safe.\n    try {\n      const res = await fetch(`${this.base()}/kgs`, {\n        headers: { \"Content-Type\": \"application/json\" },\n        signal: AbortSignal.timeout(5000),\n      });\n      return {\n        ok: true,\n        requiresAuth: res.status === 401,\n        url: this.baseUrl,\n      };\n    } catch {\n      return { ok: true, requiresAuth: true, url: this.baseUrl };\n    }\n  }\n\n  private async request<T = unknown>(\n    method: string,\n    url: string,\n    body?: unknown,\n    timeoutMs: number = 120_000,\n  ): Promise<T> {\n    const controller = new AbortController();\n    const timer = setTimeout(() => controller.abort(), timeoutMs);\n    let res: Response;\n    try {\n      res = await fetch(url, {\n        method,\n        headers: this.headers(),\n        body: body === undefined ? undefined : JSON.stringify(body),\n        signal: controller.signal,\n      });\n    } catch (err) {\n      clearTimeout(timer);\n      if (err instanceof Error && err.name === \"AbortError\") {\n        throw new CographError(`Request to ${url} timed out after ${timeoutMs}ms`);\n      }\n      throw new CographError(\n        `Network error contacting ${url}: ${err instanceof Error ? err.message : String(err)}`,\n      );\n    }\n    clearTimeout(timer);\n\n    if (!res.ok) {\n      let text = \"\";\n      try {\n        text = await res.text();\n      } catch {\n        // ignore\n      }\n      throw new CographError(`HTTP ${res.status}: ${text}`, {\n        status: res.status,\n        body: text,\n      });\n    }\n\n    // 204 No Content\n    if (res.status === 204) return undefined as T;\n\n    const ct = res.headers.get(\"content-type\") ?? \"\";\n    if (ct.includes(\"application/json\")) {\n      return (await res.json()) as T;\n    }\n    // fall back to text\n    const text = await res.text();\n    try {\n      return JSON.parse(text) as T;\n    } catch {\n      return text as unknown as T;\n    }\n  }\n\n  /**\n   * Ingest a file path or raw text into a knowledge graph.\n   *\n   * If `pathOrText` points to an existing file, its contents are read and the\n   * format is inferred from the extension (.csv, .json, .txt) unless\n   * `contentType` is given. CSV files use the two-step schema-inference + row\n   * mapping flow.\n   */\n  async ingest(\n    pathOrText: string,\n    opts: IngestOptions = {},\n  ): Promise<Record<string, unknown>> {\n    let content: string;\n    let fmt: string;\n\n    let isFile = false;\n    try {\n      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();\n    } catch {\n      isFile = false;\n    }\n\n    if (isFile) {\n      const ext = extname(pathOrText).toLowerCase();\n      if (ext === \".pdf\") {\n        throw new CographError(\n          \"PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API.\",\n        );\n      }\n      content = readFileSync(pathOrText, \"utf-8\");\n      fmt = opts.contentType ?? EXT_FORMAT[ext] ?? \"text\";\n      if (fmt === \"csv\") {\n        return this.ingestCsv(content, opts);\n      }\n    } else {\n      content = pathOrText;\n      fmt = opts.contentType ?? \"text\";\n    }\n\n    const body: Record<string, unknown> = {\n      content,\n      content_type: fmt,\n      source: \"client\",\n    };\n    if (opts.kg) body.kg_name = opts.kg;\n    return this.request(\"POST\", `${this.base()}/ingest`, body, 120_000);\n  }\n\n  private async ingestCsv(\n    content: string,\n    opts: IngestOptions,\n  ): Promise<Record<string, unknown>> {\n    const kgName = opts.kg;\n    const batchSize = opts.batchSize ?? 200;\n    const concurrency = opts.concurrency ?? 4;\n\n    const rows = parseCsv(content);\n    if (rows.length === 0) throw new CographError(\"CSV is empty\");\n    const headers = Object.keys(rows[0]!);\n\n    // Pick the rows with the most non-empty fields for schema inference.\n    // Mostly-empty leading rows (e.g. soft-deleted records) otherwise feed\n    // the LLM a near-blank sample and reliably produce malformed JSON.\n    // Stable on ties — original order preserved within equal scores.\n    const sampleRows = rows\n      .map((row, idx) => ({\n        row,\n        idx,\n        score: Object.values(row).filter(\n          (v) => v != null && String(v).trim() !== \"\",\n        ).length,\n      }))\n      .sort((a, b) => b.score - a.score || a.idx - b.idx)\n      .slice(0, 10)\n      .map((s) => s.row);\n\n    const schemaBody = {\n      headers,\n      sample_rows: sampleRows,\n      total_rows: rows.length,\n    };\n    const mapping = await this.request<Record<string, unknown>>(\n      \"POST\",\n      `${this.base()}/ingest/csv/schema`,\n      schemaBody,\n      300_000,\n    );\n\n    // Slice rows into batches up front so we can fire them off in a\n    // bounded worker pool. Sequential 50-row batches over 891 rows took\n    // ~60s end-to-end (18 round-trips); 200-row batches × 4 in flight\n    // brings that to ~5s on the same backend.\n    const batches: Array<Record<string, string>[]> = [];\n    for (let i = 0; i < rows.length; i += batchSize) {\n      batches.push(rows.slice(i, i + batchSize));\n    }\n\n    let totalEntities = 0;\n    let totalTriples = 0;\n    let rowsProcessed = 0;\n    let nextBatch = 0;\n\n    const postBatch = async (batch: Record<string, string>[]) => {\n      const body: Record<string, unknown> = {\n        mapping,\n        rows: batch,\n        source: \"client\",\n      };\n      if (kgName) body.kg_name = kgName;\n      const result = await this.request<{\n        entities_resolved?: number;\n        triples_inserted?: number;\n      }>(\"POST\", `${this.base()}/ingest/csv/rows`, body, 300_000);\n      return {\n        entities: result.entities_resolved ?? 0,\n        triples: result.triples_inserted ?? 0,\n        size: batch.length,\n      };\n    };\n\n    const worker = async (): Promise<void> => {\n      while (true) {\n        const idx = nextBatch++;\n        if (idx >= batches.length) return;\n        const r = await postBatch(batches[idx]!);\n        totalEntities += r.entities;\n        totalTriples += r.triples;\n        rowsProcessed += r.size;\n        opts.onProgress?.({\n          rowsProcessed,\n          totalRows: rows.length,\n          entitiesResolved: totalEntities,\n          triplesInserted: totalTriples,\n        });\n      }\n    };\n\n    const workers: Array<Promise<void>> = [];\n    for (let i = 0; i < Math.min(concurrency, batches.length); i++) {\n      workers.push(worker());\n    }\n    await Promise.all(workers);\n\n    // All batches are in — kick off a background recompute of the Explorer\n    // type-stats for this KG so type-detail views load instantly. The endpoint\n    // returns immediately (the scan runs server-side in the background); this\n    // is best-effort and never fails the ingest.\n    if (kgName) {\n      try {\n        await this.request(\n          \"POST\",\n          `${this.base()}/explore/kgs/${encodeURIComponent(kgName)}/recompute-stats`,\n          {},\n          15_000,\n        );\n      } catch {\n        // non-fatal — stats fall back to a live scan until the next recompute\n      }\n    }\n\n    return {\n      entities_resolved: totalEntities,\n      triples_inserted: totalTriples,\n      mapping,\n    };\n  }\n\n  /** Ask a natural language question and return the parsed response. */\n  async ask(\n    question: string,\n    opts: AskOptions = {},\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { question };\n    if (opts.kg) body.kg_name = opts.kg;\n    if (opts.model) body.model = opts.model;\n    return this.request(\"POST\", `${this.base()}/ask`, body, 60_000);\n  }\n\n  /** List all knowledge graphs for the current tenant. */\n  async listKgs(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs`,\n      undefined,\n      15_000,\n    );\n    if (Array.isArray(data)) return data as Array<Record<string, unknown>>;\n    if (data && typeof data === \"object\" && \"kgs\" in data) {\n      const kgs = (data as { kgs?: unknown }).kgs;\n      if (Array.isArray(kgs)) return kgs as Array<Record<string, unknown>>;\n    }\n    return [];\n  }\n\n  /** Create a knowledge graph. */\n  async createKg(\n    name: string,\n    description?: string,\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { name };\n    if (description) body.description = description;\n    return this.request(\"POST\", `${this.base()}/kgs`, body, 15_000);\n  }\n\n  /** Delete a knowledge graph by name. */\n  async deleteKg(name: string): Promise<Record<string, unknown>> {\n    return this.request(\n      \"DELETE\",\n      `${this.base()}/kgs/${encodeURIComponent(name)}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** List ontology types. */\n  async ontologyTypes(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/ontology/types`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n\n  /** Per-KG type counts: every type with ≥1 instance, sorted desc. */\n  async typeCounts(kg: string): Promise<TypeCount[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/type-counts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as TypeCount[]) : [];\n  }\n\n  /** Plan + run an enrichment job. Returns immediately with the job id. */\n  async enrichRun(req: EnrichRequest): Promise<EnrichJobCreate> {\n    return this.request<EnrichJobCreate>(\n      \"POST\",\n      `${this.base()}/enrich/jobs`,\n      req,\n      30_000,\n    );\n  }\n\n  /** List recent enrichment jobs for the current tenant. */\n  async enrichJobs(): Promise<JobSummary[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as JobSummary[]) : [];\n  }\n\n  /** Fetch a single enrichment job (with truncated results). */\n  async enrichJob(jobId: string): Promise<EnrichJob> {\n    return this.request<EnrichJob>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Fetch the conflict review queue for a job. */\n  async enrichConflicts(jobId: string): Promise<ConflictReview[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/conflicts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as ConflictReview[]) : [];\n  }\n\n  /** Apply a set of conflict review decisions to a job. */\n  async enrichApply(\n    jobId: string,\n    decisions: ConflictReview[],\n  ): Promise<{ applied: number }> {\n    return this.request<{ applied: number }>(\n      \"POST\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/apply`,\n      { decisions },\n      60_000,\n    );\n  }\n\n  /** Cancel an enrichment job. */\n  async enrichCancel(jobId: string): Promise<void> {\n    await this.request<void>(\n      \"DELETE\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Per-type breakdown for one type in one KG: definition + counts + samples.\n   *\n   * System predicates (rdfs:label, ingested_at, source) are hidden by default\n   * — they're attached to every entity at 100% and drown out the columns the\n   * user cares about. Pass `includeSystem: true` to see them. */\n  async typeUsage(\n    kg: string,\n    typeName: string,\n    opts: { includeSystem?: boolean } = {},\n  ): Promise<TypeUsage> {\n    const qs = opts.includeSystem ? \"?include_system=true\" : \"\";\n    return this.request<TypeUsage>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/usage${qs}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Explorer summary for a type — like typeUsage but adds coverage_pct + avg_degree. */\n  async typeSummary(kg: string, typeName: string): Promise<TypeSummary> {\n    return this.request<TypeSummary>(\n      \"GET\",\n      `${this.base()}/explore/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/summary`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Search types or attributes by name substring within a KG. */\n  async exploreSearch(\n    kg: string,\n    q: string,\n    kind: \"type\" | \"attr\" = \"type\",\n  ): Promise<Array<Record<string, unknown>>> {\n    const qs = new URLSearchParams({ kg, q, kind }).toString();\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/explore/search?${qs}`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n}\n\nexport interface TypeCount {\n  name: string;\n  entity_count: number;\n}\n\nexport interface AttributeUsage {\n  name: string;\n  datatype: string;\n  count: number;\n}\n\nexport interface RelationshipUsage {\n  name: string;\n  target_type: string | null;\n  count: number;\n}\n\nexport interface EntitySample {\n  uri: string;\n  label: string;\n}\n\nexport interface TypeUsage {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeUsage[];\n  relationships: RelationshipUsage[];\n  samples: EntitySample[];\n}\n\nexport interface AttributeSummary {\n  name: string;\n  predicate_uri: string;\n  datatype: string;\n  count: number;\n  coverage_pct: number;\n}\n\nexport interface RelationshipSummary {\n  name: string;\n  predicate_uri: string;\n  target_type: string | null;\n  count: number;\n  coverage_pct: number;\n  avg_degree: number;\n}\n\nexport interface TypeSummary {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeSummary[];\n  relationships: RelationshipSummary[];\n}\n\nexport type EnrichmentTier = \"lite\" | \"base\" | \"core\" | \"pro\";\nexport type JobStatus =\n  | \"queued\"\n  | \"running\"\n  | \"review\"\n  | \"applied\"\n  | \"cancelled\"\n  | \"failed\";\nexport type ConflictPolicy = \"skip\" | \"verify\" | \"overwrite\" | \"stage\";\nexport type RowAction =\n  | \"filled\"\n  | \"verified\"\n  | \"conflict\"\n  | \"skipped\"\n  | \"no_match\";\nexport type ReviewDecision = \"accept\" | \"reject\" | \"skip\";\n\nexport interface EnrichRequest {\n  type_name: string;\n  attributes: string[];\n  tier?: EnrichmentTier;\n  kg_name: string;\n  conflict_policy?: ConflictPolicy;\n  confidence_min?: number;\n  limit?: number;\n}\n\nexport interface EnrichJobCreate {\n  job_id: string;\n  status: JobStatus;\n  estimated_cost_usd: number;\n  total_entities: number;\n}\n\nexport interface Verdict {\n  value: string;\n  confidence: number;\n  source: string;\n  source_url?: string | null;\n  reasoning?: string | null;\n}\n\nexport interface JobProgress {\n  total: number;\n  processed: number;\n  filled: number;\n  verified: number;\n  conflicts: number;\n  skipped: number;\n  cache_hits: number;\n}\n\nexport interface RowResult {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string | null;\n  verdict: Verdict | null;\n  action: RowAction;\n}\n\nexport interface JobSummary {\n  id: string;\n  tenant_id: string;\n  kg_name: string;\n  type_name: string;\n  attributes: string[];\n  tier: EnrichmentTier;\n  status: JobStatus;\n  progress: JobProgress;\n  created_at: string;\n  started_at?: string | null;\n  completed_at?: string | null;\n  conflict_policy: ConflictPolicy;\n  confidence_min: number;\n  error?: string | null;\n}\n\nexport interface EnrichJob extends JobSummary {\n  results?: RowResult[];\n  limit?: number | null;\n}\n\nexport interface ConflictReview {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string;\n  proposed: Verdict;\n  decision?: ReviewDecision | null;\n}\n","import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { existsSync, mkdirSync, readFileSync, writeFileSync, chmodSync } from \"node:fs\";\n\nexport interface CographConfig {\n  apiKey?: string;\n  apiUrl?: string;\n  tenant?: string;\n  email?: string;\n}\n\nfunction configDir(): string {\n  return join(homedir(), \".cograph\");\n}\n\nfunction configPath(): string {\n  return join(configDir(), \"config.json\");\n}\n\n/**\n * Read `~/.cograph/config.json`. Returns an empty object if the file is\n * missing or unreadable — callers should treat fields as optional.\n */\nexport function readConfig(): CographConfig {\n  const path = configPath();\n  if (!existsSync(path)) return {};\n  try {\n    const raw = readFileSync(path, \"utf-8\");\n    const parsed = JSON.parse(raw) as unknown;\n    if (parsed && typeof parsed === \"object\") {\n      return parsed as CographConfig;\n    }\n  } catch {\n    // Corrupt or unreadable; behave as if absent so a fresh login can rewrite.\n  }\n  return {};\n}\n\n/**\n * Write `~/.cograph/config.json` with `chmod 600`. Creates the directory if\n * needed. Merges with the existing config so callers can update one field\n * without clobbering the others.\n */\nexport function writeConfig(patch: CographConfig): void {\n  const dir = configDir();\n  if (!existsSync(dir)) {\n    mkdirSync(dir, { recursive: true, mode: 0o700 });\n  }\n  const merged = { ...readConfig(), ...patch };\n  const path = configPath();\n  writeFileSync(path, JSON.stringify(merged, null, 2) + \"\\n\", \"utf-8\");\n  try {\n    chmodSync(path, 0o600);\n  } catch {\n    // best-effort; some filesystems (e.g., FAT) don't honor chmod\n  }\n}\n\nexport function configPathForDisplay(): string {\n  return 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package/dist/{shell-TP6RVSQ2.js → shell-VBSUMN3L.js}

@@ -2,7 +2,7 @@
 import {
   Client,
   CographError
-} from "./chunk-ZGWB54YO.js";
+} from "./chunk-LSTU5KXM.js";
 import "./chunk-7VVBEUZQ.js";
 
 // src/shell.ts
@@ -1100,4 +1100,4 @@ async function runShell(opts) {
 export {
   runShell
 };
-//# sourceMappingURL=shell-TP6RVSQ2.js.map
+//# sourceMappingURL=shell-VBSUMN3L.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "cograph",
-  "version": "0.1.19",
+  "version": "0.1.20",
   "description": "Cograph SDK and CLI — knowledge graph platform for structured data",
   "type": "module",
   "main": "./dist/index.js",

package/dist/chunk-ZGWB54YO.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/client.ts"],"sourcesContent":["import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\nimport { readConfig } from \"./config.js\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n  /** Rows per batch for CSV ingest. Default 200. Larger = fewer round-trips\n   *  but higher per-request memory; 200 is a good balance for typical KGs. */\n  batchSize?: number;\n  /** Max number of batches in flight at once. Default 4. Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    // Resolution order for each field: explicit opts → env var → ~/.cograph/config.json\n    // (written by `cograph login`) → built-in default. Reading the config eagerly\n    // is cheap (small JSON file) and lets users skip env vars entirely after login.\n    const cfg = readConfig();\n    this.apiKey = opts.apiKey ?? envVar(\"API_KEY\") ?? cfg.apiKey;\n    const url =\n      opts.baseUrl ?? envVar(\"API_URL\") ?? cfg.apiUrl ?? \"https://api.cograph.cloud\";\n    this.baseUrl = url.replace(/\\/+$/, \"\");\n    this.tenant = opts.tenant ?? envVar(\"TENANT\") ?? cfg.tenant ?? \"demo-tenant\";\n  }\n\n  private headers(): Record<string, string> {\n    const h: Record<string, string> = { \"Content-Type\": \"application/json\" };\n    if (this.apiKey) h[\"X-API-Key\"] = this.apiKey;\n    return h;\n  }\n\n  private base(): string {\n    return `${this.baseUrl}/graphs/${this.tenant}`;\n  }\n\n  /**\n   * Probe the backend to determine reachability and whether endpoints\n   * require an X-API-Key header. Used at shell startup to distinguish\n   * cloud (auth required) from self-hosted open-access deployments.\n   */\n  async healthCheck(): Promise<{\n    ok: boolean;\n    requiresAuth: boolean;\n    url: string;\n  }> {\n    const healthUrl = `${this.baseUrl}/health`;\n    try {\n      const res = await fetch(healthUrl, {\n        signal: AbortSignal.timeout(5000),\n      });\n      if (!res.ok) return { ok: false, requiresAuth: false, url: this.baseUrl };\n    } catch {\n      return { ok: false, requiresAuth: false, url: this.baseUrl };\n    }\n    // Probe whether endpoints require auth by hitting /kgs without X-API-Key.\n    // 401 = requires auth; 200/empty = open access; anything else = treat as\n    // auth-required to be safe.\n    try {\n      const res = await fetch(`${this.base()}/kgs`, {\n        headers: { \"Content-Type\": \"application/json\" },\n        signal: AbortSignal.timeout(5000),\n      });\n      return {\n        ok: true,\n        requiresAuth: res.status === 401,\n        url: this.baseUrl,\n      };\n    } catch {\n      return { ok: true, requiresAuth: true, url: this.baseUrl };\n    }\n  }\n\n  private async request<T = unknown>(\n    method: string,\n    url: string,\n    body?: unknown,\n    timeoutMs: number = 120_000,\n  ): Promise<T> {\n    const controller = new AbortController();\n    const timer = setTimeout(() => controller.abort(), timeoutMs);\n    let res: Response;\n    try {\n      res = await fetch(url, {\n        method,\n        headers: this.headers(),\n        body: body === undefined ? undefined : JSON.stringify(body),\n        signal: controller.signal,\n      });\n    } catch (err) {\n      clearTimeout(timer);\n      if (err instanceof Error && err.name === \"AbortError\") {\n        throw new CographError(`Request to ${url} timed out after ${timeoutMs}ms`);\n      }\n      throw new CographError(\n        `Network error contacting ${url}: ${err instanceof Error ? err.message : String(err)}`,\n      );\n    }\n    clearTimeout(timer);\n\n    if (!res.ok) {\n      let text = \"\";\n      try {\n        text = await res.text();\n      } catch {\n        // ignore\n      }\n      throw new CographError(`HTTP ${res.status}: ${text}`, {\n        status: res.status,\n        body: text,\n      });\n    }\n\n    // 204 No Content\n    if (res.status === 204) return undefined as T;\n\n    const ct = res.headers.get(\"content-type\") ?? \"\";\n    if (ct.includes(\"application/json\")) {\n      return (await res.json()) as T;\n    }\n    // fall back to text\n    const text = await res.text();\n    try {\n      return JSON.parse(text) as T;\n    } catch {\n      return text as unknown as T;\n    }\n  }\n\n  /**\n   * Ingest a file path or raw text into a knowledge graph.\n   *\n   * If `pathOrText` points to an existing file, its contents are read and the\n   * format is inferred from the extension (.csv, .json, .txt) unless\n   * `contentType` is given. CSV files use the two-step schema-inference + row\n   * mapping flow.\n   */\n  async ingest(\n    pathOrText: string,\n    opts: IngestOptions = {},\n  ): Promise<Record<string, unknown>> {\n    let content: string;\n    let fmt: string;\n\n    let isFile = false;\n    try {\n      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();\n    } catch {\n      isFile = false;\n    }\n\n    if (isFile) {\n      const ext = extname(pathOrText).toLowerCase();\n      if (ext === \".pdf\") {\n        throw new CographError(\n          \"PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API.\",\n        );\n      }\n      content = readFileSync(pathOrText, \"utf-8\");\n      fmt = opts.contentType ?? EXT_FORMAT[ext] ?? \"text\";\n      if (fmt === \"csv\") {\n        return this.ingestCsv(content, opts);\n      }\n    } else {\n      content = pathOrText;\n      fmt = opts.contentType ?? \"text\";\n    }\n\n    const body: Record<string, unknown> = {\n      content,\n      content_type: fmt,\n      source: \"client\",\n    };\n    if (opts.kg) body.kg_name = opts.kg;\n    return this.request(\"POST\", `${this.base()}/ingest`, body, 120_000);\n  }\n\n  private async ingestCsv(\n    content: string,\n    opts: IngestOptions,\n  ): Promise<Record<string, unknown>> {\n    const kgName = opts.kg;\n    const batchSize = opts.batchSize ?? 200;\n    const concurrency = opts.concurrency ?? 4;\n\n    const rows = parseCsv(content);\n    if (rows.length === 0) throw new CographError(\"CSV is empty\");\n    const headers = Object.keys(rows[0]!);\n\n    // Pick the rows with the most non-empty fields for schema inference.\n    // Mostly-empty leading rows (e.g. soft-deleted records) otherwise feed\n    // the LLM a near-blank sample and reliably produce malformed JSON.\n    // Stable on ties — original order preserved within equal scores.\n    const sampleRows = rows\n      .map((row, idx) => ({\n        row,\n        idx,\n        score: Object.values(row).filter(\n          (v) => v != null && String(v).trim() !== \"\",\n        ).length,\n      }))\n      .sort((a, b) => b.score - a.score || a.idx - b.idx)\n      .slice(0, 10)\n      .map((s) => s.row);\n\n    const schemaBody = {\n      headers,\n      sample_rows: sampleRows,\n      total_rows: rows.length,\n    };\n    const mapping = await this.request<Record<string, unknown>>(\n      \"POST\",\n      `${this.base()}/ingest/csv/schema`,\n      schemaBody,\n      300_000,\n    );\n\n    // Slice rows into batches up front so we can fire them off in a\n    // bounded worker pool. Sequential 50-row batches over 891 rows took\n    // ~60s end-to-end (18 round-trips); 200-row batches × 4 in flight\n    // brings that to ~5s on the same backend.\n    const batches: Array<Record<string, string>[]> = [];\n    for (let i = 0; i < rows.length; i += batchSize) {\n      batches.push(rows.slice(i, i + batchSize));\n    }\n\n    let totalEntities = 0;\n    let totalTriples = 0;\n    let rowsProcessed = 0;\n    let nextBatch = 0;\n\n    const postBatch = async (batch: Record<string, string>[]) => {\n      const body: Record<string, unknown> = {\n        mapping,\n        rows: batch,\n        source: \"client\",\n      };\n      if (kgName) body.kg_name = kgName;\n      const result = await this.request<{\n        entities_resolved?: number;\n        triples_inserted?: number;\n      }>(\"POST\", `${this.base()}/ingest/csv/rows`, body, 300_000);\n      return {\n        entities: result.entities_resolved ?? 0,\n        triples: result.triples_inserted ?? 0,\n        size: batch.length,\n      };\n    };\n\n    const worker = async (): Promise<void> => {\n      while (true) {\n        const idx = nextBatch++;\n        if (idx >= batches.length) return;\n        const r = await postBatch(batches[idx]!);\n        totalEntities += r.entities;\n        totalTriples += r.triples;\n        rowsProcessed += r.size;\n        opts.onProgress?.({\n          rowsProcessed,\n          totalRows: rows.length,\n          entitiesResolved: totalEntities,\n          triplesInserted: totalTriples,\n        });\n      }\n    };\n\n    const workers: Array<Promise<void>> = [];\n    for (let i = 0; i < Math.min(concurrency, batches.length); i++) {\n      workers.push(worker());\n    }\n    await Promise.all(workers);\n\n    return {\n      entities_resolved: totalEntities,\n      triples_inserted: totalTriples,\n      mapping,\n    };\n  }\n\n  /** Ask a natural language question and return the parsed response. */\n  async ask(\n    question: string,\n    opts: AskOptions = {},\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { question };\n    if (opts.kg) body.kg_name = opts.kg;\n    if (opts.model) body.model = opts.model;\n    return this.request(\"POST\", `${this.base()}/ask`, body, 60_000);\n  }\n\n  /** List all knowledge graphs for the current tenant. */\n  async listKgs(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs`,\n      undefined,\n      15_000,\n    );\n    if (Array.isArray(data)) return data as Array<Record<string, unknown>>;\n    if (data && typeof data === \"object\" && \"kgs\" in data) {\n      const kgs = (data as { kgs?: unknown }).kgs;\n      if (Array.isArray(kgs)) return kgs as Array<Record<string, unknown>>;\n    }\n    return [];\n  }\n\n  /** Create a knowledge graph. */\n  async createKg(\n    name: string,\n    description?: string,\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { name };\n    if (description) body.description = description;\n    return this.request(\"POST\", `${this.base()}/kgs`, body, 15_000);\n  }\n\n  /** Delete a knowledge graph by name. */\n  async deleteKg(name: string): Promise<Record<string, unknown>> {\n    return this.request(\n      \"DELETE\",\n      `${this.base()}/kgs/${encodeURIComponent(name)}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** List ontology types. */\n  async ontologyTypes(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/ontology/types`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n\n  /** Per-KG type counts: every type with ≥1 instance, sorted desc. */\n  async typeCounts(kg: string): Promise<TypeCount[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/type-counts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as TypeCount[]) : [];\n  }\n\n  /** Plan + run an enrichment job. Returns immediately with the job id. */\n  async enrichRun(req: EnrichRequest): Promise<EnrichJobCreate> {\n    return this.request<EnrichJobCreate>(\n      \"POST\",\n      `${this.base()}/enrich/jobs`,\n      req,\n      30_000,\n    );\n  }\n\n  /** List recent enrichment jobs for the current tenant. */\n  async enrichJobs(): Promise<JobSummary[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as JobSummary[]) : [];\n  }\n\n  /** Fetch a single enrichment job (with truncated results). */\n  async enrichJob(jobId: string): Promise<EnrichJob> {\n    return this.request<EnrichJob>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Fetch the conflict review queue for a job. */\n  async enrichConflicts(jobId: string): Promise<ConflictReview[]> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/conflicts`,\n      undefined,\n      30_000,\n    );\n    return Array.isArray(data) ? (data as ConflictReview[]) : [];\n  }\n\n  /** Apply a set of conflict review decisions to a job. */\n  async enrichApply(\n    jobId: string,\n    decisions: ConflictReview[],\n  ): Promise<{ applied: number }> {\n    return this.request<{ applied: number }>(\n      \"POST\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}/apply`,\n      { decisions },\n      60_000,\n    );\n  }\n\n  /** Cancel an enrichment job. */\n  async enrichCancel(jobId: string): Promise<void> {\n    await this.request<void>(\n      \"DELETE\",\n      `${this.base()}/enrich/jobs/${encodeURIComponent(jobId)}`,\n      undefined,\n      15_000,\n    );\n  }\n\n  /** Per-type breakdown for one type in one KG: definition + counts + samples.\n   *\n   * System predicates (rdfs:label, ingested_at, source) are hidden by default\n   * — they're attached to every entity at 100% and drown out the columns the\n   * user cares about. Pass `includeSystem: true` to see them. */\n  async typeUsage(\n    kg: string,\n    typeName: string,\n    opts: { includeSystem?: boolean } = {},\n  ): Promise<TypeUsage> {\n    const qs = opts.includeSystem ? \"?include_system=true\" : \"\";\n    return this.request<TypeUsage>(\n      \"GET\",\n      `${this.base()}/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/usage${qs}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Explorer summary for a type — like typeUsage but adds coverage_pct + avg_degree. */\n  async typeSummary(kg: string, typeName: string): Promise<TypeSummary> {\n    return this.request<TypeSummary>(\n      \"GET\",\n      `${this.base()}/explore/kgs/${encodeURIComponent(kg)}/types/${encodeURIComponent(typeName)}/summary`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** Search types or attributes by name substring within a KG. */\n  async exploreSearch(\n    kg: string,\n    q: string,\n    kind: \"type\" | \"attr\" = \"type\",\n  ): Promise<Array<Record<string, unknown>>> {\n    const qs = new URLSearchParams({ kg, q, kind }).toString();\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/explore/search?${qs}`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n}\n\nexport interface TypeCount {\n  name: string;\n  entity_count: number;\n}\n\nexport interface AttributeUsage {\n  name: string;\n  datatype: string;\n  count: number;\n}\n\nexport interface RelationshipUsage {\n  name: string;\n  target_type: string | null;\n  count: number;\n}\n\nexport interface EntitySample {\n  uri: string;\n  label: string;\n}\n\nexport interface TypeUsage {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeUsage[];\n  relationships: RelationshipUsage[];\n  samples: EntitySample[];\n}\n\nexport interface AttributeSummary {\n  name: string;\n  predicate_uri: string;\n  datatype: string;\n  count: number;\n  coverage_pct: number;\n}\n\nexport interface RelationshipSummary {\n  name: string;\n  predicate_uri: string;\n  target_type: string | null;\n  count: number;\n  coverage_pct: number;\n  avg_degree: number;\n}\n\nexport interface TypeSummary {\n  name: string;\n  description: string;\n  parent_type: string | null;\n  entity_count: number;\n  attributes: AttributeSummary[];\n  relationships: RelationshipSummary[];\n}\n\nexport type EnrichmentTier = \"lite\" | \"base\" | \"core\" | \"pro\";\nexport type JobStatus =\n  | \"queued\"\n  | \"running\"\n  | \"review\"\n  | \"applied\"\n  | \"cancelled\"\n  | \"failed\";\nexport type ConflictPolicy = \"skip\" | \"verify\" | \"overwrite\" | \"stage\";\nexport type RowAction =\n  | \"filled\"\n  | \"verified\"\n  | \"conflict\"\n  | \"skipped\"\n  | \"no_match\";\nexport type ReviewDecision = \"accept\" | \"reject\" | \"skip\";\n\nexport interface EnrichRequest {\n  type_name: string;\n  attributes: string[];\n  tier?: EnrichmentTier;\n  kg_name: string;\n  conflict_policy?: ConflictPolicy;\n  confidence_min?: number;\n  limit?: number;\n}\n\nexport interface EnrichJobCreate {\n  job_id: string;\n  status: JobStatus;\n  estimated_cost_usd: number;\n  total_entities: number;\n}\n\nexport interface Verdict {\n  value: string;\n  confidence: number;\n  source: string;\n  source_url?: string | null;\n  reasoning?: string | null;\n}\n\nexport interface JobProgress {\n  total: number;\n  processed: number;\n  filled: number;\n  verified: number;\n  conflicts: number;\n  skipped: number;\n  cache_hits: number;\n}\n\nexport interface RowResult {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string | null;\n  verdict: Verdict | null;\n  action: RowAction;\n}\n\nexport interface JobSummary {\n  id: string;\n  tenant_id: string;\n  kg_name: string;\n  type_name: string;\n  attributes: string[];\n  tier: EnrichmentTier;\n  status: JobStatus;\n  progress: JobProgress;\n  created_at: string;\n  started_at?: string | null;\n  completed_at?: string | null;\n  conflict_policy: ConflictPolicy;\n  confidence_min: number;\n  error?: string | null;\n}\n\nexport interface EnrichJob extends JobSummary {\n  results?: RowResult[];\n  limit?: number | null;\n}\n\nexport interface ConflictReview {\n  entity_uri: string;\n  attribute: string;\n  existing_value: string;\n  proposed: Verdict;\n  decision?: ReviewDecision | 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