cograph 0.1.11 → 0.1.13

package/dist/{chunk-LZAJDGV4.js → chunk-LHGNZB2L.js}

@@ -195,9 +195,16 @@ var Client = class {
     const rows = parseCsv(content);
     if (rows.length === 0) throw new CographError("CSV is empty");
     const headers = Object.keys(rows[0]);
+    const sampleRows = rows.map((row, idx) => ({
+      row,
+      idx,
+      score: Object.values(row).filter(
+        (v) => v != null && String(v).trim() !== ""
+      ).length
+    })).sort((a, b) => b.score - a.score || a.idx - b.idx).slice(0, 10).map((s) => s.row);
     const schemaBody = {
       headers,
-      sample_rows: rows.slice(0, 5),
+      sample_rows: sampleRows,
       total_rows: rows.length
     };
     const mapping = await this.request(
@@ -308,4 +315,4 @@ export {
   CographError,
   Client
 };
-//# sourceMappingURL=chunk-LZAJDGV4.js.map
+//# sourceMappingURL=chunk-LHGNZB2L.js.map

package/dist/chunk-LHGNZB2L.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/client.ts"],"sourcesContent":["import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\nimport { readConfig } from \"./config.js\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n  /** Rows per batch for CSV ingest. Default 200. Larger = fewer round-trips\n   *  but higher per-request memory; 200 is a good balance for typical KGs. */\n  batchSize?: number;\n  /** Max number of batches in flight at once. Default 4. Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    // Resolution order for each field: explicit opts → env var → ~/.cograph/config.json\n    // (written by `cograph login`) → built-in default. Reading the config eagerly\n    // is cheap (small JSON file) and lets users skip env vars entirely after login.\n    const cfg = readConfig();\n    this.apiKey = opts.apiKey ?? envVar(\"API_KEY\") ?? cfg.apiKey;\n    const url =\n      opts.baseUrl ?? envVar(\"API_URL\") ?? cfg.apiUrl ?? \"https://api.cograph.cloud\";\n    this.baseUrl = url.replace(/\\/+$/, \"\");\n    this.tenant = opts.tenant ?? envVar(\"TENANT\") ?? cfg.tenant ?? \"demo-tenant\";\n  }\n\n  private headers(): Record<string, string> {\n    const h: Record<string, string> = { \"Content-Type\": \"application/json\" };\n    if (this.apiKey) h[\"X-API-Key\"] = this.apiKey;\n    return h;\n  }\n\n  private base(): string {\n    return `${this.baseUrl}/graphs/${this.tenant}`;\n  }\n\n  private async request<T = unknown>(\n    method: string,\n    url: string,\n    body?: unknown,\n    timeoutMs: number = 120_000,\n  ): Promise<T> {\n    const controller = new AbortController();\n    const timer = setTimeout(() => controller.abort(), timeoutMs);\n    let res: Response;\n    try {\n      res = await fetch(url, {\n        method,\n        headers: this.headers(),\n        body: body === undefined ? undefined : JSON.stringify(body),\n        signal: controller.signal,\n      });\n    } catch (err) {\n      clearTimeout(timer);\n      if (err instanceof Error && err.name === \"AbortError\") {\n        throw new CographError(`Request to ${url} timed out after ${timeoutMs}ms`);\n      }\n      throw new CographError(\n        `Network error contacting ${url}: ${err instanceof Error ? err.message : String(err)}`,\n      );\n    }\n    clearTimeout(timer);\n\n    if (!res.ok) {\n      let text = \"\";\n      try {\n        text = await res.text();\n      } catch {\n        // ignore\n      }\n      throw new CographError(`HTTP ${res.status}: ${text}`, {\n        status: res.status,\n        body: text,\n      });\n    }\n\n    // 204 No Content\n    if (res.status === 204) return undefined as T;\n\n    const ct = res.headers.get(\"content-type\") ?? \"\";\n    if (ct.includes(\"application/json\")) {\n      return (await res.json()) as T;\n    }\n    // fall back to text\n    const text = await res.text();\n    try {\n      return JSON.parse(text) as T;\n    } catch {\n      return text as unknown as T;\n    }\n  }\n\n  /**\n   * Ingest a file path or raw text into a knowledge graph.\n   *\n   * If `pathOrText` points to an existing file, its contents are read and the\n   * format is inferred from the extension (.csv, .json, .txt) unless\n   * `contentType` is given. CSV files use the two-step schema-inference + row\n   * mapping flow.\n   */\n  async ingest(\n    pathOrText: string,\n    opts: IngestOptions = {},\n  ): Promise<Record<string, unknown>> {\n    let content: string;\n    let fmt: string;\n\n    let isFile = false;\n    try {\n      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();\n    } catch {\n      isFile = false;\n    }\n\n    if (isFile) {\n      const ext = extname(pathOrText).toLowerCase();\n      if (ext === \".pdf\") {\n        throw new CographError(\n          \"PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API.\",\n        );\n      }\n      content = readFileSync(pathOrText, \"utf-8\");\n      fmt = opts.contentType ?? EXT_FORMAT[ext] ?? \"text\";\n      if (fmt === \"csv\") {\n        return this.ingestCsv(content, opts);\n      }\n    } else {\n      content = pathOrText;\n      fmt = opts.contentType ?? \"text\";\n    }\n\n    const body: Record<string, unknown> = {\n      content,\n      content_type: fmt,\n      source: \"client\",\n    };\n    if (opts.kg) body.kg_name = opts.kg;\n    return this.request(\"POST\", `${this.base()}/ingest`, body, 120_000);\n  }\n\n  private async ingestCsv(\n    content: string,\n    opts: IngestOptions,\n  ): Promise<Record<string, unknown>> {\n    const kgName = opts.kg;\n    const batchSize = opts.batchSize ?? 200;\n    const concurrency = opts.concurrency ?? 4;\n\n    const rows = parseCsv(content);\n    if (rows.length === 0) throw new CographError(\"CSV is empty\");\n    const headers = Object.keys(rows[0]!);\n\n    // Pick the rows with the most non-empty fields for schema inference.\n    // Mostly-empty leading rows (e.g. soft-deleted records) otherwise feed\n    // the LLM a near-blank sample and reliably produce malformed JSON.\n    // Stable on ties — original order preserved within equal scores.\n    const sampleRows = rows\n      .map((row, idx) => ({\n        row,\n        idx,\n        score: Object.values(row).filter(\n          (v) => v != null && String(v).trim() !== \"\",\n        ).length,\n      }))\n      .sort((a, b) => b.score - a.score || a.idx - b.idx)\n      .slice(0, 10)\n      .map((s) => s.row);\n\n    const schemaBody = {\n      headers,\n      sample_rows: sampleRows,\n      total_rows: rows.length,\n    };\n    const mapping = await this.request<Record<string, unknown>>(\n      \"POST\",\n      `${this.base()}/ingest/csv/schema`,\n      schemaBody,\n      300_000,\n    );\n\n    // Slice rows into batches up front so we can fire them off in a\n    // bounded worker pool. Sequential 50-row batches over 891 rows took\n    // ~60s end-to-end (18 round-trips); 200-row batches × 4 in flight\n    // brings that to ~5s on the same backend.\n    const batches: Array<Record<string, string>[]> = [];\n    for (let i = 0; i < rows.length; i += batchSize) {\n      batches.push(rows.slice(i, i + batchSize));\n    }\n\n    let totalEntities = 0;\n    let totalTriples = 0;\n    let rowsProcessed = 0;\n    let nextBatch = 0;\n\n    const postBatch = async (batch: Record<string, string>[]) => {\n      const body: Record<string, unknown> = {\n        mapping,\n        rows: batch,\n        source: \"client\",\n      };\n      if (kgName) body.kg_name = kgName;\n      const result = await this.request<{\n        entities_resolved?: number;\n        triples_inserted?: number;\n      }>(\"POST\", `${this.base()}/ingest/csv/rows`, body, 300_000);\n      return {\n        entities: result.entities_resolved ?? 0,\n        triples: result.triples_inserted ?? 0,\n        size: batch.length,\n      };\n    };\n\n    const worker = async (): Promise<void> => {\n      while (true) {\n        const idx = nextBatch++;\n        if (idx >= batches.length) return;\n        const r = await postBatch(batches[idx]!);\n        totalEntities += r.entities;\n        totalTriples += r.triples;\n        rowsProcessed += r.size;\n        opts.onProgress?.({\n          rowsProcessed,\n          totalRows: rows.length,\n          entitiesResolved: totalEntities,\n          triplesInserted: totalTriples,\n        });\n      }\n    };\n\n    const workers: Array<Promise<void>> = [];\n    for (let i = 0; i < Math.min(concurrency, batches.length); i++) {\n      workers.push(worker());\n    }\n    await Promise.all(workers);\n\n    return {\n      entities_resolved: totalEntities,\n      triples_inserted: totalTriples,\n      mapping,\n    };\n  }\n\n  /** Ask a natural language question and return the parsed response. */\n  async ask(\n    question: string,\n    opts: AskOptions = {},\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { question };\n    if (opts.kg) body.kg_name = opts.kg;\n    if (opts.model) body.model = opts.model;\n    return this.request(\"POST\", `${this.base()}/ask`, body, 60_000);\n  }\n\n  /** List all knowledge graphs for the current tenant. */\n  async listKgs(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs`,\n      undefined,\n      15_000,\n    );\n    if (Array.isArray(data)) return data as Array<Record<string, unknown>>;\n    if (data && typeof data === \"object\" && \"kgs\" in data) {\n      const kgs = (data as { kgs?: unknown }).kgs;\n      if (Array.isArray(kgs)) return kgs as Array<Record<string, unknown>>;\n    }\n    return [];\n  }\n\n  /** Create a knowledge graph. */\n  async createKg(\n    name: string,\n    description?: string,\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { name };\n    if (description) body.description = description;\n    return this.request(\"POST\", `${this.base()}/kgs`, body, 15_000);\n  }\n\n  /** Delete a knowledge graph by name. */\n  async deleteKg(name: string): Promise<Record<string, unknown>> {\n    return this.request(\n      \"DELETE\",\n      `${this.base()}/kgs/${encodeURIComponent(name)}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** List ontology types. */\n  async ontologyTypes(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/ontology/types`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? 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package/dist/cli.js

@@ -2,7 +2,7 @@
 import {
   Client,
   CographError
-} from "./chunk-LZAJDGV4.js";
+} from "./chunk-LHGNZB2L.js";
 import "./chunk-7VVBEUZQ.js";
 
 // src/cli.ts
@@ -36,7 +36,7 @@ async function confirm(prompt) {
 }
 var program = new Command();
 program.name("cograph").description("Cograph Knowledge Graph CLI").version("0.1.7").action(async () => {
-  const { runShell } = await import("./shell-LWIHW6C7.js");
+  const { runShell } = await import("./shell-LPQMW4MI.js");
   await runShell({});
 });
 var kg = program.command("kg").description("Manage knowledge graphs");
@@ -249,7 +249,7 @@ program.command("clear").description("Clear data").option("--kg <name>", "Clear
       };
       if (c.apiKey) headers["X-API-Key"] = c.apiKey;
       const filters = opts.includeOntology ? "" : `FILTER(CONTAINS(STR(?s), '/entities/') || CONTAINS(STR(?s), '/onto/') || CONTAINS(STR(?s), '/kgs/'))`;
-      const query = `SELECT ?s ?p ?o FROM <https://omnix.dev/graphs/${tenant}> WHERE { ?s ?p ?o . ${filters} } LIMIT 1000`;
+      const query = `SELECT ?s ?p ?o FROM <https://cograph.tech/graphs/${tenant}> WHERE { ?s ?p ?o . ${filters} } LIMIT 1000`;
       process.stdout.write("Clearing...\n");
       let deleted = 0;
       for (let i = 0; i < 50; i++) {
@@ -286,7 +286,7 @@ program.command("login").description("Sign in via your browser and save an API k
   await runLogin();
 });
 program.command("shell").description("Start an interactive REPL").option("--kg <name>", "Knowledge graph to use").action(async (opts) => {
-  const { runShell } = await import("./shell-LWIHW6C7.js");
+  const { runShell } = await import("./shell-LPQMW4MI.js");
   await runShell({ kg: opts.kg });
 });
 program.parseAsync(process.argv).catch((err) => {

package/dist/cli.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/cli.ts"],"sourcesContent":["import { createInterface } from \"node:readline\";\nimport { Command } from \"commander\";\nimport { Client, CographError } from \"./client.js\";\n\nfunction client(): Client {\n  return new Client();\n}\n\nfunction printJson(data: unknown): void {\n  process.stdout.write(JSON.stringify(data, null, 2) + \"\\n\");\n}\n\nfunction fail(msg: string, code = 1): never {\n  process.stderr.write(msg.endsWith(\"\\n\") ? msg : msg + \"\\n\");\n  process.exit(code);\n}\n\nasync function withErrors<T>(fn: () => Promise<T>): Promise<T | void> {\n  try {\n    return await fn();\n  } catch (err) {\n    if (err instanceof CographError) {\n      fail(`Error: ${err.message}`);\n    }\n    fail(`Error: ${err instanceof Error ? err.message : String(err)}`);\n  }\n}\n\nasync function confirm(prompt: string): Promise<boolean> {\n  const rl = createInterface({ input: process.stdin, output: process.stdout });\n  return new Promise((resolve) => {\n    rl.question(`${prompt} [y/N] `, (ans) => {\n      rl.close();\n      resolve(ans.trim().toLowerCase() === \"y\");\n    });\n  });\n}\n\nconst program = new Command();\nprogram\n  .name(\"cograph\")\n  .description(\"Cograph Knowledge Graph CLI\")\n  .version(\"0.1.7\")\n  // Default action when no subcommand is given: drop into the interactive\n  // shell. So `cograph` (or `npx cograph`) Just Works for the common case;\n  // subcommands like `cograph ingest <file>` still route to their own\n  // actions because commander dispatches subcommands first.\n  .action(async () => {\n    const { runShell } = await import(\"./shell.js\");\n    await runShell({});\n  });\n\n// ---------------------------------------------------------------------------\n// kg\n// ---------------------------------------------------------------------------\n\nconst kg = program.command(\"kg\").description(\"Manage knowledge graphs\");\n\nkg.command(\"list\")\n  .description(\"List knowledge graphs\")\n  .action(async () => {\n    await withErrors(async () => {\n      const kgs = await client().listKgs();\n      if (!kgs.length) {\n        process.stdout.write(\n          \"No knowledge graphs. Create one with: cograph kg create <name>\\n\",\n        );\n        return;\n      }\n      for (const k of kgs) {\n        const name = String(k.name ?? \"?\");\n        const triples = Number(k.triple_count ?? 0);\n        const desc = k.description ? ` — ${k.description}` : \"\";\n        const padName = name.padEnd(20, \" \");\n        const padTriples = String(triples).padStart(6, \" \");\n        process.stdout.write(`  ${padName} ${padTriples} triples${desc}\\n`);\n      }\n    });\n  });\n\nkg.command(\"create <name>\")\n  .description(\"Create a knowledge graph\")\n  .option(\"-d, --description <text>\", \"Description\")\n  .action(async (name: string, opts: { description?: string }) => {\n    await withErrors(async () => {\n      const created = await client().createKg(name, opts.description);\n      process.stdout.write(`Created knowledge graph: ${created.name ?? name}\\n`);\n    });\n  });\n\nkg.command(\"delete <name>\")\n  .description(\"Delete a knowledge graph\")\n  .action(async (name: string) => {\n    await withErrors(async () => {\n      await client().deleteKg(name);\n      process.stdout.write(`Deleted knowledge graph: ${name}\\n`);\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// ingest\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"ingest [file]\")\n  .description(\"Ingest data from a file or --text\")\n  .option(\"-t, --text <text>\", \"Inline text to ingest\")\n  .option(\"--kg <name>\", \"Target knowledge graph name\")\n  .option(\n    \"-f, --format <fmt>\",\n    \"Override format detection (text|csv|json)\",\n  )\n  .action(\n    async (\n      file: string | undefined,\n      opts: { text?: string; kg?: string; format?: string },\n    ) => {\n      await withErrors(async () => {\n        const c = client();\n        if (opts.text) {\n          process.stdout.write(\n            `Ingesting text (${opts.text.length.toLocaleString()} chars)...\\n`,\n          );\n          const result = await c.ingest(opts.text, {\n            kg: opts.kg,\n            contentType: opts.format ?? \"text\",\n          });\n          printIngestResult(result);\n          return;\n        }\n        if (!file) {\n          fail(\"Provide a file or --text\");\n        }\n        // ingest() handles file reading + format detection + CSV two-step flow.\n        process.stdout.write(`Ingesting ${file}...\\n`);\n        const result = await c.ingest(file, {\n          kg: opts.kg,\n          contentType: opts.format,\n        });\n        printIngestResult(result);\n      });\n    },\n  );\n\nfunction printIngestResult(result: Record<string, unknown>): void {\n  const num = (k: string) => Number(result[k] ?? 0);\n  process.stdout.write(`  Entities extracted: ${num(\"entities_extracted\")}\\n`);\n  process.stdout.write(`  Entities resolved:  ${num(\"entities_resolved\")}\\n`);\n  process.stdout.write(`  Triples inserted:   ${num(\"triples_inserted\")}\\n`);\n  const types = result.types_created;\n  if (Array.isArray(types) && types.length) {\n    process.stdout.write(`  Types created:      ${types.join(\", \")}\\n`);\n  }\n  const rejections = result.rejections;\n  if (Array.isArray(rejections) && rejections.length) {\n    process.stdout.write(`  Rejections:         ${rejections.length}\\n`);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// ask\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"ask <question>\")\n  .description(\"Ask a natural language question\")\n  .option(\"--kg <name>\", \"Knowledge graph to query\")\n  .option(\"-d, --debug\", \"Show SPARQL and latency breakdown\")\n  .option(\"-m, --model <model>\", \"Override query model\")\n  .action(\n    async (\n      question: string,\n      opts: { kg?: string; debug?: boolean; model?: string },\n    ) => {\n      await withErrors(async () => {\n        if (opts.model) process.stdout.write(`Model: ${opts.model}\\n`);\n        process.stdout.write(`Q: ${question}\\n`);\n        process.stdout.write(\"Generating answer...\\n\");\n        const t0 = Date.now();\n        const result = await client().ask(question, {\n          kg: opts.kg,\n          model: opts.model,\n        });\n        const roundtripMs = Date.now() - t0;\n        process.stdout.write(`\\nA: ${result.answer ?? \"No answer\"}\\n`);\n        if (opts.debug) {\n          process.stdout.write(`\\nSPARQL:\\n${result.sparql ?? \"\"}\\n`);\n          const timing = (result.timing ?? {}) as Record<string, unknown>;\n          if (Object.keys(timing).length) {\n            process.stdout.write(`\\n${\"─\".repeat(40)}\\n`);\n            process.stdout.write(\n              `${\"Stage\".padEnd(25)} ${\"Time\".padStart(10)}\\n`,\n            );\n            process.stdout.write(`${\"─\".repeat(40)}\\n`);\n            for (const [key, val] of Object.entries(timing)) {\n              if (key === \"attempts\") {\n                process.stdout.write(\n                  `${\"Attempts\".padEnd(25)} ${String(val).padStart(10)}\\n`,\n                );\n              } else if (typeof val === \"string\") {\n                const label = key\n                  .replace(/_/g, \" \")\n                  .replace(/\\b\\w/g, (c) => c.toUpperCase());\n                process.stdout.write(\n                  `${label.padEnd(25)} ${val.padStart(10)}\\n`,\n                );\n              } else {\n                const label = key\n                  .replace(/_ms$/, \"\")\n                  .replace(/_/g, \" \")\n                  .replace(/\\b\\w/g, (c) => c.toUpperCase());\n                const num = typeof val === \"number\" ? val : Number(val);\n                process.stdout.write(\n                  `${label.padEnd(25)} ${num.toFixed(1).padStart(8)}ms\\n`,\n                );\n              }\n            }\n            process.stdout.write(`${\"─\".repeat(40)}\\n`);\n            process.stdout.write(\n              `${\"Client roundtrip\".padEnd(25)} ${roundtripMs.toFixed(1).padStart(8)}ms\\n`,\n            );\n          }\n        }\n      });\n    },\n  );\n\n// ---------------------------------------------------------------------------\n// ontology\n// ---------------------------------------------------------------------------\n\nconst onto = program.command(\"ontology\").description(\"View ontology\");\n\nonto\n  .command(\"types\")\n  .description(\"List ontology types\")\n  .action(async () => {\n    await withErrors(async () => {\n      const types = await client().ontologyTypes();\n      if (!types.length) {\n        process.stdout.write(\"No ontology types defined.\\n\");\n        return;\n      }\n      for (const t of types) {\n        const parent = t.parent_type\n          ? 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So `cograph` (or `npx cograph`) Just Works for the common case;\n  // subcommands like `cograph ingest <file>` still route to their own\n  // actions because commander dispatches subcommands first.\n  .action(async () => {\n    const { runShell } = await import(\"./shell.js\");\n    await runShell({});\n  });\n\n// ---------------------------------------------------------------------------\n// kg\n// ---------------------------------------------------------------------------\n\nconst kg = program.command(\"kg\").description(\"Manage knowledge graphs\");\n\nkg.command(\"list\")\n  .description(\"List knowledge graphs\")\n  .action(async () => {\n    await withErrors(async () => {\n      const kgs = await client().listKgs();\n      if (!kgs.length) {\n        process.stdout.write(\n          \"No knowledge graphs. Create one with: cograph kg create <name>\\n\",\n        );\n        return;\n      }\n      for (const k of kgs) {\n        const name = String(k.name ?? \"?\");\n        const triples = Number(k.triple_count ?? 0);\n        const desc = k.description ? ` — ${k.description}` : \"\";\n        const padName = name.padEnd(20, \" \");\n        const padTriples = String(triples).padStart(6, \" \");\n        process.stdout.write(`  ${padName} ${padTriples} triples${desc}\\n`);\n      }\n    });\n  });\n\nkg.command(\"create <name>\")\n  .description(\"Create a knowledge graph\")\n  .option(\"-d, --description <text>\", \"Description\")\n  .action(async (name: string, opts: { description?: string }) => {\n    await withErrors(async () => {\n      const created = await client().createKg(name, opts.description);\n      process.stdout.write(`Created knowledge graph: ${created.name ?? name}\\n`);\n    });\n  });\n\nkg.command(\"delete <name>\")\n  .description(\"Delete a knowledge graph\")\n  .action(async (name: string) => {\n    await withErrors(async () => {\n      await client().deleteKg(name);\n      process.stdout.write(`Deleted knowledge graph: ${name}\\n`);\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// ingest\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"ingest [file]\")\n  .description(\"Ingest data from a file or --text\")\n  .option(\"-t, --text <text>\", \"Inline text to ingest\")\n  .option(\"--kg <name>\", \"Target knowledge graph name\")\n  .option(\n    \"-f, --format <fmt>\",\n    \"Override format detection (text|csv|json)\",\n  )\n  .action(\n    async (\n      file: string | undefined,\n      opts: { text?: string; kg?: string; format?: string },\n    ) => {\n      await withErrors(async () => {\n        const c = client();\n        if (opts.text) {\n          process.stdout.write(\n            `Ingesting text (${opts.text.length.toLocaleString()} chars)...\\n`,\n          );\n          const result = await c.ingest(opts.text, {\n            kg: opts.kg,\n            contentType: opts.format ?? \"text\",\n          });\n          printIngestResult(result);\n          return;\n        }\n        if (!file) {\n          fail(\"Provide a file or --text\");\n        }\n        // ingest() handles file reading + format detection + CSV two-step flow.\n        process.stdout.write(`Ingesting ${file}...\\n`);\n        const result = await c.ingest(file, {\n          kg: opts.kg,\n          contentType: opts.format,\n        });\n        printIngestResult(result);\n      });\n    },\n  );\n\nfunction printIngestResult(result: Record<string, unknown>): void {\n  const num = (k: string) => Number(result[k] ?? 0);\n  process.stdout.write(`  Entities extracted: ${num(\"entities_extracted\")}\\n`);\n  process.stdout.write(`  Entities resolved:  ${num(\"entities_resolved\")}\\n`);\n  process.stdout.write(`  Triples inserted:   ${num(\"triples_inserted\")}\\n`);\n  const types = result.types_created;\n  if (Array.isArray(types) && types.length) {\n    process.stdout.write(`  Types created:      ${types.join(\", \")}\\n`);\n  }\n  const rejections = result.rejections;\n  if (Array.isArray(rejections) && rejections.length) {\n    process.stdout.write(`  Rejections:         ${rejections.length}\\n`);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// ask\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"ask <question>\")\n  .description(\"Ask a natural language question\")\n  .option(\"--kg <name>\", \"Knowledge graph to query\")\n  .option(\"-d, --debug\", \"Show SPARQL and latency breakdown\")\n  .option(\"-m, --model <model>\", \"Override query model\")\n  .action(\n    async (\n      question: string,\n      opts: { kg?: string; debug?: boolean; model?: string },\n    ) => {\n      await withErrors(async () => {\n        if (opts.model) process.stdout.write(`Model: ${opts.model}\\n`);\n        process.stdout.write(`Q: ${question}\\n`);\n        process.stdout.write(\"Generating answer...\\n\");\n        const t0 = Date.now();\n        const result = await client().ask(question, {\n          kg: opts.kg,\n          model: opts.model,\n        });\n        const roundtripMs = Date.now() - t0;\n        process.stdout.write(`\\nA: ${result.answer ?? \"No answer\"}\\n`);\n        if (opts.debug) {\n          process.stdout.write(`\\nSPARQL:\\n${result.sparql ?? \"\"}\\n`);\n          const timing = (result.timing ?? {}) as Record<string, unknown>;\n          if (Object.keys(timing).length) {\n            process.stdout.write(`\\n${\"─\".repeat(40)}\\n`);\n            process.stdout.write(\n              `${\"Stage\".padEnd(25)} ${\"Time\".padStart(10)}\\n`,\n            );\n            process.stdout.write(`${\"─\".repeat(40)}\\n`);\n            for (const [key, val] of Object.entries(timing)) {\n              if (key === \"attempts\") {\n                process.stdout.write(\n                  `${\"Attempts\".padEnd(25)} ${String(val).padStart(10)}\\n`,\n                );\n              } else if (typeof val === \"string\") {\n                const label = key\n                  .replace(/_/g, \" \")\n                  .replace(/\\b\\w/g, (c) => c.toUpperCase());\n                process.stdout.write(\n                  `${label.padEnd(25)} ${val.padStart(10)}\\n`,\n                );\n              } else {\n                const label = key\n                  .replace(/_ms$/, \"\")\n                  .replace(/_/g, \" \")\n                  .replace(/\\b\\w/g, (c) => c.toUpperCase());\n                const num = typeof val === \"number\" ? val : Number(val);\n                process.stdout.write(\n                  `${label.padEnd(25)} ${num.toFixed(1).padStart(8)}ms\\n`,\n                );\n              }\n            }\n            process.stdout.write(`${\"─\".repeat(40)}\\n`);\n            process.stdout.write(\n              `${\"Client roundtrip\".padEnd(25)} ${roundtripMs.toFixed(1).padStart(8)}ms\\n`,\n            );\n          }\n        }\n      });\n    },\n  );\n\n// ---------------------------------------------------------------------------\n// ontology\n// ---------------------------------------------------------------------------\n\nconst onto = program.command(\"ontology\").description(\"View ontology\");\n\nonto\n  .command(\"types\")\n  .description(\"List ontology types\")\n  .action(async () => {\n    await withErrors(async () => {\n      const types = await client().ontologyTypes();\n      if (!types.length) {\n        process.stdout.write(\"No ontology types defined.\\n\");\n        return;\n      }\n      for (const t of types) {\n        const parent = t.parent_type\n          ? ` (subClassOf ${t.parent_type})`\n          : \"\";\n        const desc = t.description ? ` — ${t.description}` : \"\";\n        process.stdout.write(`  ${t.name}${parent}${desc}\\n`);\n        const attrs = (t.attributes ?? []) as Array<Record<string, unknown>>;\n        for (const a of attrs) {\n          process.stdout.write(\n            `    .${a.name} (${a.datatype ?? \"string\"})\\n`,\n          );\n        }\n      }\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// clear\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"clear\")\n  .description(\"Clear data\")\n  .option(\"--kg <name>\", \"Clear a specific knowledge graph\")\n  .option(\n    \"--include-ontology\",\n    \"Also clear the ontology (only meaningful when --kg is omitted)\",\n    false,\n  )\n  .option(\"-y, --yes\", \"Skip confirmation\", false)\n  .action(\n    async (opts: { kg?: string; includeOntology?: boolean; yes?: boolean }) => {\n      await withErrors(async () => {\n        let msg: string;\n        if (opts.kg) {\n          msg = `Clear KG '${opts.kg}'?`;\n        } else if (opts.includeOntology) {\n          msg = \"Clear EVERYTHING including ontology?\";\n        } else {\n          msg = \"Clear all instance data (ontology preserved)?\";\n        }\n\n        if (!opts.yes) {\n          const ok = await confirm(msg);\n          if (!ok) {\n            process.stdout.write(\"Cancelled.\\n\");\n            return;\n          }\n        }\n\n        const c = client();\n        if (opts.kg) {\n          await c.deleteKg(opts.kg);\n          process.stdout.write(`Cleared KG: ${opts.kg}\\n`);\n          return;\n        }\n\n        // Bulk-clear via /query + DELETE /triples — same loop the Python CLI uses.\n        const tenant = c.tenant;\n        const baseUrl = `${c.baseUrl}/graphs/${tenant}`;\n        const headers: Record<string, string> = {\n          \"Content-Type\": \"application/json\",\n        };\n        if (c.apiKey) headers[\"X-API-Key\"] = c.apiKey;\n\n        const filters = opts.includeOntology\n          ? \"\"\n          : `FILTER(CONTAINS(STR(?s), '/entities/') || CONTAINS(STR(?s), '/onto/') || CONTAINS(STR(?s), '/kgs/'))`;\n        const query = `SELECT ?s ?p ?o FROM <https://cograph.tech/graphs/${tenant}> WHERE { ?s ?p ?o . ${filters} } LIMIT 1000`;\n\n        process.stdout.write(\"Clearing...\\n\");\n        let deleted = 0;\n        for (let i = 0; i < 50; i++) {\n          const fetchRes = await fetch(`${baseUrl}/query`, {\n            method: \"POST\",\n            headers,\n            body: JSON.stringify({ query }),\n          });\n          if (!fetchRes.ok) break;\n          const data = (await fetchRes.json()) as {\n            bindings?: Array<Record<string, unknown>>;\n          };\n          const bindings = data.bindings ?? [];\n          if (!bindings.length) break;\n          const triples = bindings\n            .filter((b) => b.s)\n            .map((b) => ({\n              subject: b.s,\n              predicate: b.p,\n              object: b.o,\n            }));\n          for (let j = 0; j < triples.length; j += 100) {\n            await fetch(`${baseUrl}/triples`, {\n              method: \"DELETE\",\n              headers,\n              body: JSON.stringify({ triples: triples.slice(j, j + 100) }),\n            });\n          }\n          deleted += triples.length;\n        }\n        process.stdout.write(`Deleted ${deleted} triples\\n`);\n      });\n    },\n  );\n\n// ---------------------------------------------------------------------------\n// login\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"login\")\n  .description(\"Sign in via your browser and save an API key\")\n  .action(async () => {\n    const { runLogin } = await 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package/dist/index.js

@@ -216,9 +216,16 @@ var Client = class {
     const rows = parseCsv(content);
     if (rows.length === 0) throw new CographError("CSV is empty");
     const headers = Object.keys(rows[0]);
+    const sampleRows = rows.map((row, idx) => ({
+      row,
+      idx,
+      score: Object.values(row).filter(
+        (v) => v != null && String(v).trim() !== ""
+      ).length
+    })).sort((a, b) => b.score - a.score || a.idx - b.idx).slice(0, 10).map((s) => s.row);
     const schemaBody = {
       headers,
-      sample_rows: rows.slice(0, 5),
+      sample_rows: sampleRows,
       total_rows: rows.length
     };
     const mapping = await this.request(

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/client.ts","../src/config.ts"],"sourcesContent":["import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\nimport { readConfig } from \"./config.js\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n  /** Rows per batch for CSV ingest. Default 200. Larger = fewer round-trips\n   *  but higher per-request memory; 200 is a good balance for typical KGs. */\n  batchSize?: number;\n  /** Max number of batches in flight at once. Default 4. Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    // Resolution order for each field: explicit opts → env var → ~/.cograph/config.json\n    // (written by `cograph login`) → built-in default. 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+{"version":3,"sources":["../src/client.ts","../src/config.ts"],"sourcesContent":["import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\nimport { readConfig } from \"./config.js\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n  /** Rows per batch for CSV ingest. Default 200. Larger = fewer round-trips\n   *  but higher per-request memory; 200 is a good balance for typical KGs. */\n  batchSize?: number;\n  /** Max number of batches in flight at once. Default 4. Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    // Resolution order for each field: explicit opts → env var → ~/.cograph/config.json\n    // (written by `cograph login`) → built-in default. Reading the config eagerly\n    // is cheap (small JSON file) and lets users skip env vars entirely after login.\n    const cfg = readConfig();\n    this.apiKey = opts.apiKey ?? envVar(\"API_KEY\") ?? cfg.apiKey;\n    const url =\n      opts.baseUrl ?? envVar(\"API_URL\") ?? cfg.apiUrl ?? \"https://api.cograph.cloud\";\n    this.baseUrl = url.replace(/\\/+$/, \"\");\n    this.tenant = opts.tenant ?? envVar(\"TENANT\") ?? cfg.tenant ?? \"demo-tenant\";\n  }\n\n  private headers(): Record<string, string> {\n    const h: Record<string, string> = { \"Content-Type\": \"application/json\" };\n    if (this.apiKey) h[\"X-API-Key\"] = this.apiKey;\n    return h;\n  }\n\n  private base(): string {\n    return `${this.baseUrl}/graphs/${this.tenant}`;\n  }\n\n  private async request<T = unknown>(\n    method: string,\n    url: string,\n    body?: unknown,\n    timeoutMs: number = 120_000,\n  ): Promise<T> {\n    const controller = new AbortController();\n    const timer = setTimeout(() => controller.abort(), timeoutMs);\n    let res: Response;\n    try {\n      res = await fetch(url, {\n        method,\n        headers: this.headers(),\n        body: body === undefined ? undefined : JSON.stringify(body),\n        signal: controller.signal,\n      });\n    } catch (err) {\n      clearTimeout(timer);\n      if (err instanceof Error && err.name === \"AbortError\") {\n        throw new CographError(`Request to ${url} timed out after ${timeoutMs}ms`);\n      }\n      throw new CographError(\n        `Network error contacting ${url}: ${err instanceof Error ? err.message : String(err)}`,\n      );\n    }\n    clearTimeout(timer);\n\n    if (!res.ok) {\n      let text = \"\";\n      try {\n        text = await res.text();\n      } catch {\n        // ignore\n      }\n      throw new CographError(`HTTP ${res.status}: ${text}`, {\n        status: res.status,\n        body: text,\n      });\n    }\n\n    // 204 No Content\n    if (res.status === 204) return undefined as T;\n\n    const ct = res.headers.get(\"content-type\") ?? \"\";\n    if (ct.includes(\"application/json\")) {\n      return (await res.json()) as T;\n    }\n    // fall back to text\n    const text = await res.text();\n    try {\n      return JSON.parse(text) as T;\n    } catch {\n      return text as unknown as T;\n    }\n  }\n\n  /**\n   * Ingest a file path or raw text into a knowledge graph.\n   *\n   * If `pathOrText` points to an existing file, its contents are read and the\n   * format is inferred from the extension (.csv, .json, .txt) unless\n   * `contentType` is given. CSV files use the two-step schema-inference + row\n   * mapping flow.\n   */\n  async ingest(\n    pathOrText: string,\n    opts: IngestOptions = {},\n  ): Promise<Record<string, unknown>> {\n    let content: string;\n    let fmt: string;\n\n    let isFile = false;\n    try {\n      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();\n    } catch {\n      isFile = false;\n    }\n\n    if (isFile) {\n      const ext = extname(pathOrText).toLowerCase();\n      if (ext === \".pdf\") {\n        throw new CographError(\n          \"PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API.\",\n        );\n      }\n      content = readFileSync(pathOrText, \"utf-8\");\n      fmt = opts.contentType ?? EXT_FORMAT[ext] ?? \"text\";\n      if (fmt === \"csv\") {\n        return this.ingestCsv(content, opts);\n      }\n    } else {\n      content = pathOrText;\n      fmt = opts.contentType ?? \"text\";\n    }\n\n    const body: Record<string, unknown> = {\n      content,\n      content_type: fmt,\n      source: \"client\",\n    };\n    if (opts.kg) body.kg_name = opts.kg;\n    return this.request(\"POST\", `${this.base()}/ingest`, body, 120_000);\n  }\n\n  private async ingestCsv(\n    content: string,\n    opts: IngestOptions,\n  ): Promise<Record<string, unknown>> {\n    const kgName = opts.kg;\n    const batchSize = opts.batchSize ?? 200;\n    const concurrency = opts.concurrency ?? 4;\n\n    const rows = parseCsv(content);\n    if (rows.length === 0) throw new CographError(\"CSV is empty\");\n    const headers = Object.keys(rows[0]!);\n\n    // Pick the rows with the most non-empty fields for schema inference.\n    // Mostly-empty leading rows (e.g. soft-deleted records) otherwise feed\n    // the LLM a near-blank sample and reliably produce malformed JSON.\n    // Stable on ties — original order preserved within equal scores.\n    const sampleRows = rows\n      .map((row, idx) => ({\n        row,\n        idx,\n        score: Object.values(row).filter(\n          (v) => v != null && String(v).trim() !== \"\",\n        ).length,\n      }))\n      .sort((a, b) => b.score - a.score || a.idx - b.idx)\n      .slice(0, 10)\n      .map((s) => s.row);\n\n    const schemaBody = {\n      headers,\n      sample_rows: sampleRows,\n      total_rows: rows.length,\n    };\n    const mapping = await this.request<Record<string, unknown>>(\n      \"POST\",\n      `${this.base()}/ingest/csv/schema`,\n      schemaBody,\n      300_000,\n    );\n\n    // Slice rows into batches up front so we can fire them off in a\n    // bounded worker pool. Sequential 50-row batches over 891 rows took\n    // ~60s end-to-end (18 round-trips); 200-row batches × 4 in flight\n    // brings that to ~5s on the same backend.\n    const batches: Array<Record<string, string>[]> = [];\n    for (let i = 0; i < rows.length; i += batchSize) {\n      batches.push(rows.slice(i, i + batchSize));\n    }\n\n    let totalEntities = 0;\n    let totalTriples = 0;\n    let rowsProcessed = 0;\n    let nextBatch = 0;\n\n    const postBatch = async (batch: Record<string, string>[]) => {\n      const body: Record<string, unknown> = {\n        mapping,\n        rows: batch,\n        source: \"client\",\n      };\n      if (kgName) body.kg_name = kgName;\n      const result = await this.request<{\n        entities_resolved?: number;\n        triples_inserted?: number;\n      }>(\"POST\", `${this.base()}/ingest/csv/rows`, body, 300_000);\n      return {\n        entities: result.entities_resolved ?? 0,\n        triples: result.triples_inserted ?? 0,\n        size: batch.length,\n      };\n    };\n\n    const worker = async (): Promise<void> => {\n      while (true) {\n        const idx = nextBatch++;\n        if (idx >= batches.length) return;\n        const r = await postBatch(batches[idx]!);\n        totalEntities += r.entities;\n        totalTriples += r.triples;\n        rowsProcessed += r.size;\n        opts.onProgress?.({\n          rowsProcessed,\n          totalRows: rows.length,\n          entitiesResolved: totalEntities,\n          triplesInserted: totalTriples,\n        });\n      }\n    };\n\n    const workers: Array<Promise<void>> = [];\n    for (let i = 0; i < Math.min(concurrency, batches.length); i++) {\n      workers.push(worker());\n    }\n    await Promise.all(workers);\n\n    return {\n      entities_resolved: totalEntities,\n      triples_inserted: totalTriples,\n      mapping,\n    };\n  }\n\n  /** Ask a natural language question and return the parsed response. */\n  async ask(\n    question: string,\n    opts: AskOptions = {},\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { question };\n    if (opts.kg) body.kg_name = opts.kg;\n    if (opts.model) body.model = opts.model;\n    return this.request(\"POST\", `${this.base()}/ask`, body, 60_000);\n  }\n\n  /** List all knowledge graphs for the current tenant. */\n  async listKgs(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs`,\n      undefined,\n      15_000,\n    );\n    if (Array.isArray(data)) return data as Array<Record<string, unknown>>;\n    if (data && typeof data === \"object\" && \"kgs\" in data) {\n      const kgs = (data as { kgs?: unknown }).kgs;\n      if (Array.isArray(kgs)) return kgs as Array<Record<string, unknown>>;\n    }\n    return [];\n  }\n\n  /** Create a knowledge graph. */\n  async createKg(\n    name: string,\n    description?: string,\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { name };\n    if (description) body.description = description;\n    return this.request(\"POST\", `${this.base()}/kgs`, body, 15_000);\n  }\n\n  /** Delete a knowledge graph by name. */\n  async deleteKg(name: string): Promise<Record<string, unknown>> {\n    return this.request(\n      \"DELETE\",\n      `${this.base()}/kgs/${encodeURIComponent(name)}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** List ontology types. */\n  async ontologyTypes(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/ontology/types`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? (data as Array<Record<string, unknown>>) : [];\n  }\n}\n","import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { existsSync, mkdirSync, readFileSync, writeFileSync, chmodSync } from \"node:fs\";\n\nexport interface CographConfig {\n  apiKey?: string;\n  apiUrl?: string;\n  tenant?: string;\n  email?: string;\n}\n\nfunction configDir(): string {\n  return join(homedir(), \".cograph\");\n}\n\nfunction configPath(): string {\n  return join(configDir(), \"config.json\");\n}\n\n/**\n * Read `~/.cograph/config.json`. Returns an empty object if the file is\n * missing or unreadable — callers should treat fields as optional.\n */\nexport function readConfig(): CographConfig {\n  const path = configPath();\n  if (!existsSync(path)) return {};\n  try {\n    const raw = readFileSync(path, \"utf-8\");\n    const parsed = JSON.parse(raw) as unknown;\n    if (parsed && typeof parsed === \"object\") {\n      return parsed as CographConfig;\n    }\n  } catch {\n    // Corrupt or unreadable; behave as if absent so a fresh login can rewrite.\n  }\n  return {};\n}\n\n/**\n * Write `~/.cograph/config.json` with `chmod 600`. Creates the directory if\n * needed. Merges with the existing config so callers can update one field\n * without clobbering the others.\n */\nexport function writeConfig(patch: CographConfig): void {\n  const dir = configDir();\n  if (!existsSync(dir)) {\n    mkdirSync(dir, { recursive: true, mode: 0o700 });\n  }\n  const merged = { ...readConfig(), ...patch };\n  const path = configPath();\n  writeFileSync(path, JSON.stringify(merged, null, 2) + \"\\n\", \"utf-8\");\n  try {\n    chmodSync(path, 0o600);\n  } catch {\n    // best-effort; some filesystems (e.g., FAT) don't honor chmod\n  }\n}\n\nexport function configPathForDisplay(): string {\n  return 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package/dist/{shell-LWIHW6C7.js → shell-LPQMW4MI.js}

@@ -2,7 +2,7 @@
 import {
   Client,
   CographError
-} from "./chunk-LZAJDGV4.js";
+} from "./chunk-LHGNZB2L.js";
 import "./chunk-7VVBEUZQ.js";
 
 // src/shell.ts
@@ -529,4 +529,4 @@ async function runShell(opts) {
 export {
   runShell
 };
-//# sourceMappingURL=shell-LWIHW6C7.js.map
+//# sourceMappingURL=shell-LPQMW4MI.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "cograph",
-  "version": "0.1.11",
+  "version": "0.1.13",
   "description": "Cograph SDK and CLI — knowledge graph platform for structured data",
   "type": "module",
   "main": "./dist/index.js",

package/dist/chunk-LZAJDGV4.js.map

@@ -1 +0,0 @@
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Higher saturates\n   *  the backend faster but risks 429s on large ingests. */\n  concurrency?: number;\n  /** Called after each batch completes during CSV ingest, in batch order.\n   *  Use for progress UI. Not invoked for text/json ingest. */\n  onProgress?: (progress: IngestProgress) => void;\n}\n\nexport interface IngestProgress {\n  rowsProcessed: number;\n  totalRows: number;\n  entitiesResolved: number;\n  triplesInserted: number;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. 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