cograph 0.1.0 → 0.1.1

package/dist/cli.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/cli.ts","../src/client.ts"],"sourcesContent":["import { createInterface } from \"node:readline\";\nimport { Command } from \"commander\";\nimport { Client, CographError } from \"./client.js\";\n\nfunction client(): Client {\n  return new Client();\n}\n\nfunction printJson(data: unknown): void {\n  process.stdout.write(JSON.stringify(data, null, 2) + \"\\n\");\n}\n\nfunction fail(msg: string, code = 1): never {\n  process.stderr.write(msg.endsWith(\"\\n\") ? msg : msg + \"\\n\");\n  process.exit(code);\n}\n\nasync function withErrors<T>(fn: () => Promise<T>): Promise<T | void> {\n  try {\n    return await fn();\n  } catch (err) {\n    if (err instanceof CographError) {\n      fail(`Error: ${err.message}`);\n    }\n    fail(`Error: ${err instanceof Error ? err.message : String(err)}`);\n  }\n}\n\nasync function confirm(prompt: string): Promise<boolean> {\n  const rl = createInterface({ input: process.stdin, output: process.stdout });\n  return new Promise((resolve) => {\n    rl.question(`${prompt} [y/N] `, (ans) => {\n      rl.close();\n      resolve(ans.trim().toLowerCase() === \"y\");\n    });\n  });\n}\n\nconst program = new Command();\nprogram\n  .name(\"cograph\")\n  .description(\"Cograph Knowledge Graph CLI\")\n  .version(\"0.1.0\");\n\n// ---------------------------------------------------------------------------\n// kg\n// ---------------------------------------------------------------------------\n\nconst kg = program.command(\"kg\").description(\"Manage knowledge graphs\");\n\nkg.command(\"list\")\n  .description(\"List knowledge graphs\")\n  .action(async () => {\n    await withErrors(async () => {\n      const kgs = await client().listKgs();\n      if (!kgs.length) {\n        process.stdout.write(\n          \"No knowledge graphs. Create one with: cograph kg create <name>\\n\",\n        );\n        return;\n      }\n      for (const k of kgs) {\n        const name = String(k.name ?? \"?\");\n        const triples = Number(k.triple_count ?? 0);\n        const desc = k.description ? ` — ${k.description}` : \"\";\n        const padName = name.padEnd(20, \" \");\n        const padTriples = String(triples).padStart(6, \" \");\n        process.stdout.write(`  ${padName} ${padTriples} triples${desc}\\n`);\n      }\n    });\n  });\n\nkg.command(\"create <name>\")\n  .description(\"Create a knowledge graph\")\n  .option(\"-d, --description <text>\", \"Description\")\n  .action(async (name: string, opts: { description?: string }) => {\n    await withErrors(async () => {\n      const created = await client().createKg(name, opts.description);\n      process.stdout.write(`Created knowledge graph: ${created.name ?? name}\\n`);\n    });\n  });\n\nkg.command(\"delete <name>\")\n  .description(\"Delete a knowledge graph\")\n  .action(async (name: string) => {\n    await withErrors(async () => {\n      await client().deleteKg(name);\n      process.stdout.write(`Deleted knowledge graph: ${name}\\n`);\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// ingest\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"ingest [file]\")\n  .description(\"Ingest data from a file or --text\")\n  .option(\"-t, --text <text>\", \"Inline text to ingest\")\n  .option(\"--kg <name>\", \"Target knowledge graph name\")\n  .option(\n    \"-f, --format <fmt>\",\n    \"Override format detection (text|csv|json)\",\n  )\n  .action(\n    async (\n      file: string | undefined,\n      opts: { text?: string; kg?: string; format?: string },\n    ) => {\n      await withErrors(async () => {\n        const c = client();\n        if (opts.text) {\n          process.stdout.write(\n            `Ingesting text (${opts.text.length.toLocaleString()} chars)...\\n`,\n          );\n          const result = await c.ingest(opts.text, {\n            kg: opts.kg,\n            contentType: opts.format ?? \"text\",\n          });\n          printIngestResult(result);\n          return;\n        }\n        if (!file) {\n          fail(\"Provide a file or --text\");\n        }\n        // ingest() handles file reading + format detection + CSV two-step flow.\n        process.stdout.write(`Ingesting ${file}...\\n`);\n        const result = await c.ingest(file, {\n          kg: opts.kg,\n          contentType: opts.format,\n        });\n        printIngestResult(result);\n      });\n    },\n  );\n\nfunction printIngestResult(result: Record<string, unknown>): void {\n  const num = (k: string) => Number(result[k] ?? 0);\n  process.stdout.write(`  Entities extracted: ${num(\"entities_extracted\")}\\n`);\n  process.stdout.write(`  Entities resolved:  ${num(\"entities_resolved\")}\\n`);\n  process.stdout.write(`  Triples inserted:   ${num(\"triples_inserted\")}\\n`);\n  const types = result.types_created;\n  if (Array.isArray(types) && types.length) {\n    process.stdout.write(`  Types created:      ${types.join(\", \")}\\n`);\n  }\n  const rejections = result.rejections;\n  if (Array.isArray(rejections) && rejections.length) {\n    process.stdout.write(`  Rejections:         ${rejections.length}\\n`);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// ask\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"ask <question>\")\n  .description(\"Ask a natural language question\")\n  .option(\"--kg <name>\", \"Knowledge graph to query\")\n  .option(\"-d, --debug\", \"Show SPARQL and latency breakdown\")\n  .option(\"-m, --model <model>\", \"Override query model\")\n  .action(\n    async (\n      question: string,\n      opts: { kg?: string; debug?: boolean; model?: string },\n    ) => {\n      await withErrors(async () => {\n        if (opts.model) process.stdout.write(`Model: ${opts.model}\\n`);\n        process.stdout.write(`Q: ${question}\\n`);\n        process.stdout.write(\"Generating answer...\\n\");\n        const t0 = Date.now();\n        const result = await client().ask(question, {\n          kg: opts.kg,\n          model: opts.model,\n        });\n        const roundtripMs = Date.now() - t0;\n        process.stdout.write(`\\nA: ${result.answer ?? \"No answer\"}\\n`);\n        if (opts.debug) {\n          process.stdout.write(`\\nSPARQL:\\n${result.sparql ?? \"\"}\\n`);\n          const timing = (result.timing ?? {}) as Record<string, unknown>;\n          if (Object.keys(timing).length) {\n            process.stdout.write(`\\n${\"─\".repeat(40)}\\n`);\n            process.stdout.write(\n              `${\"Stage\".padEnd(25)} ${\"Time\".padStart(10)}\\n`,\n            );\n            process.stdout.write(`${\"─\".repeat(40)}\\n`);\n            for (const [key, val] of Object.entries(timing)) {\n              if (key === \"attempts\") {\n                process.stdout.write(\n                  `${\"Attempts\".padEnd(25)} ${String(val).padStart(10)}\\n`,\n                );\n              } else if (typeof val === \"string\") {\n                const label = key\n                  .replace(/_/g, \" \")\n                  .replace(/\\b\\w/g, (c) => c.toUpperCase());\n                process.stdout.write(\n                  `${label.padEnd(25)} ${val.padStart(10)}\\n`,\n                );\n              } else {\n                const label = key\n                  .replace(/_ms$/, \"\")\n                  .replace(/_/g, \" \")\n                  .replace(/\\b\\w/g, (c) => c.toUpperCase());\n                const num = typeof val === \"number\" ? val : Number(val);\n                process.stdout.write(\n                  `${label.padEnd(25)} ${num.toFixed(1).padStart(8)}ms\\n`,\n                );\n              }\n            }\n            process.stdout.write(`${\"─\".repeat(40)}\\n`);\n            process.stdout.write(\n              `${\"Client roundtrip\".padEnd(25)} ${roundtripMs.toFixed(1).padStart(8)}ms\\n`,\n            );\n          }\n        }\n      });\n    },\n  );\n\n// ---------------------------------------------------------------------------\n// ontology\n// ---------------------------------------------------------------------------\n\nconst onto = program.command(\"ontology\").description(\"View ontology\");\n\nonto\n  .command(\"types\")\n  .description(\"List ontology types\")\n  .action(async () => {\n    await withErrors(async () => {\n      const types = await client().ontologyTypes();\n      if (!types.length) {\n        process.stdout.write(\"No ontology types defined.\\n\");\n        return;\n      }\n      for (const t of types) {\n        const parent = t.parent_type\n          ? ` (subClassOf ${t.parent_type})`\n          : \"\";\n        const desc = t.description ? ` — ${t.description}` : \"\";\n        process.stdout.write(`  ${t.name}${parent}${desc}\\n`);\n        const attrs = (t.attributes ?? []) as Array<Record<string, unknown>>;\n        for (const a of attrs) {\n          process.stdout.write(\n            `    .${a.name} (${a.datatype ?? \"string\"})\\n`,\n          );\n        }\n      }\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// clear\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"clear\")\n  .description(\"Clear data\")\n  .option(\"--kg <name>\", \"Clear a specific knowledge graph\")\n  .option(\n    \"--include-ontology\",\n    \"Also clear the ontology (only meaningful when --kg is omitted)\",\n    false,\n  )\n  .option(\"-y, --yes\", \"Skip confirmation\", false)\n  .action(\n    async (opts: { kg?: string; includeOntology?: boolean; yes?: boolean }) => {\n      await withErrors(async () => {\n        let msg: string;\n        if (opts.kg) {\n          msg = `Clear KG '${opts.kg}'?`;\n        } else if (opts.includeOntology) {\n          msg = \"Clear EVERYTHING including ontology?\";\n        } else {\n          msg = \"Clear all instance data (ontology preserved)?\";\n        }\n\n        if (!opts.yes) {\n          const ok = await confirm(msg);\n          if (!ok) {\n            process.stdout.write(\"Cancelled.\\n\");\n            return;\n          }\n        }\n\n        const c = client();\n        if (opts.kg) {\n          await c.deleteKg(opts.kg);\n          process.stdout.write(`Cleared KG: ${opts.kg}\\n`);\n          return;\n        }\n\n        // Bulk-clear via /query + DELETE /triples — same loop the Python CLI uses.\n        const tenant = c.tenant;\n        const baseUrl = `${c.baseUrl}/graphs/${tenant}`;\n        const headers: Record<string, string> = {\n          \"Content-Type\": \"application/json\",\n        };\n        if (c.apiKey) headers[\"X-API-Key\"] = c.apiKey;\n\n        const filters = opts.includeOntology\n          ? \"\"\n          : `FILTER(CONTAINS(STR(?s), '/entities/') || CONTAINS(STR(?s), '/onto/') || CONTAINS(STR(?s), '/kgs/'))`;\n        const query = `SELECT ?s ?p ?o FROM <https://omnix.dev/graphs/${tenant}> WHERE { ?s ?p ?o . ${filters} } LIMIT 1000`;\n\n        process.stdout.write(\"Clearing...\\n\");\n        let deleted = 0;\n        for (let i = 0; i < 50; i++) {\n          const fetchRes = await fetch(`${baseUrl}/query`, {\n            method: \"POST\",\n            headers,\n            body: JSON.stringify({ query }),\n          });\n          if (!fetchRes.ok) break;\n          const data = (await fetchRes.json()) as {\n            bindings?: Array<Record<string, unknown>>;\n          };\n          const bindings = data.bindings ?? [];\n          if (!bindings.length) break;\n          const triples = bindings\n            .filter((b) => b.s)\n            .map((b) => ({\n              subject: b.s,\n              predicate: b.p,\n              object: b.o,\n            }));\n          for (let j = 0; j < triples.length; j += 100) {\n            await fetch(`${baseUrl}/triples`, {\n              method: \"DELETE\",\n              headers,\n              body: JSON.stringify({ triples: triples.slice(j, j + 100) }),\n            });\n          }\n          deleted += triples.length;\n        }\n        process.stdout.write(`Deleted ${deleted} triples\\n`);\n      });\n    },\n  );\n\n// ---------------------------------------------------------------------------\n\nprogram.parseAsync(process.argv).catch((err) => {\n  fail(`Error: ${err instanceof Error ? err.message : String(err)}`);\n});\n\n// silence unused import warning if ever needed\nvoid printJson;\n","import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. Does not handle BOM stripping or\n * encoding detection — we assume UTF-8 text in.\n */\nexport function parseCsv(content: string): Record<string, string>[] {\n  const rows: string[][] = [];\n  let cur: string[] = [];\n  let field = \"\";\n  let inQuotes = false;\n\n  for (let i = 0; i < content.length; i++) {\n    const ch = content[i];\n    if (inQuotes) {\n      if (ch === '\"') {\n        if (content[i + 1] === '\"') {\n          field += '\"';\n          i++;\n        } else {\n          inQuotes = false;\n        }\n      } else {\n        field += ch;\n      }\n    } else {\n      if (ch === '\"') {\n        inQuotes = true;\n      } else if (ch === \",\") {\n        cur.push(field);\n        field = \"\";\n      } else if (ch === \"\\n\") {\n        cur.push(field);\n        rows.push(cur);\n        cur = [];\n        field = \"\";\n      } else if (ch === \"\\r\") {\n        // swallow; handled by the following \\n in CRLF, or treat lone \\r as line end\n        if (content[i + 1] !== \"\\n\") {\n          cur.push(field);\n          rows.push(cur);\n          cur = [];\n          field = \"\";\n        }\n      } else {\n        field += ch;\n      }\n    }\n  }\n  // flush trailing field/row\n  if (field.length > 0 || cur.length > 0) {\n    cur.push(field);\n    rows.push(cur);\n  }\n\n  if (rows.length === 0) return [];\n  const headers = rows[0]!.map((h) => h.trim());\n  const out: Record<string, string>[] = [];\n  for (let r = 1; r < rows.length; r++) {\n    const row = rows[r]!;\n    // skip blank trailing lines\n    if (row.length === 1 && row[0] === \"\") continue;\n    const obj: Record<string, string> = {};\n    for (let c = 0; c < headers.length; c++) {\n      obj[headers[c]!] = row[c] ?? \"\";\n    }\n    out.push(obj);\n  }\n  return out;\n}\n\nexport class Client {\n  apiKey: string | undefined;\n  baseUrl: string;\n  tenant: string;\n\n  constructor(opts: ClientOptions = {}) {\n    this.apiKey = opts.apiKey ?? envVar(\"API_KEY\");\n    const url = opts.baseUrl ?? envVar(\"API_URL\") ?? \"https://api.cograph.cloud\";\n    this.baseUrl = url.replace(/\\/+$/, \"\");\n    this.tenant = opts.tenant ?? envVar(\"TENANT\") ?? \"demo-tenant\";\n  }\n\n  private headers(): Record<string, string> {\n    const h: Record<string, string> = { \"Content-Type\": \"application/json\" };\n    if (this.apiKey) h[\"X-API-Key\"] = this.apiKey;\n    return h;\n  }\n\n  private base(): string {\n    return `${this.baseUrl}/graphs/${this.tenant}`;\n  }\n\n  private async request<T = unknown>(\n    method: string,\n    url: string,\n    body?: unknown,\n    timeoutMs: number = 120_000,\n  ): Promise<T> {\n    const controller = new AbortController();\n    const timer = setTimeout(() => controller.abort(), timeoutMs);\n    let res: Response;\n    try {\n      res = await fetch(url, {\n        method,\n        headers: this.headers(),\n        body: body === undefined ? undefined : JSON.stringify(body),\n        signal: controller.signal,\n      });\n    } catch (err) {\n      clearTimeout(timer);\n      if (err instanceof Error && err.name === \"AbortError\") {\n        throw new CographError(`Request to ${url} timed out after ${timeoutMs}ms`);\n      }\n      throw new CographError(\n        `Network error contacting ${url}: ${err instanceof Error ? err.message : String(err)}`,\n      );\n    }\n    clearTimeout(timer);\n\n    if (!res.ok) {\n      let text = \"\";\n      try {\n        text = await res.text();\n      } catch {\n        // ignore\n      }\n      throw new CographError(`HTTP ${res.status}: ${text}`, {\n        status: res.status,\n        body: text,\n      });\n    }\n\n    // 204 No Content\n    if (res.status === 204) return undefined as T;\n\n    const ct = res.headers.get(\"content-type\") ?? \"\";\n    if (ct.includes(\"application/json\")) {\n      return (await res.json()) as T;\n    }\n    // fall back to text\n    const text = await res.text();\n    try {\n      return JSON.parse(text) as T;\n    } catch {\n      return text as unknown as T;\n    }\n  }\n\n  /**\n   * Ingest a file path or raw text into a knowledge graph.\n   *\n   * If `pathOrText` points to an existing file, its contents are read and the\n   * format is inferred from the extension (.csv, .json, .txt) unless\n   * `contentType` is given. CSV files use the two-step schema-inference + row\n   * mapping flow.\n   */\n  async ingest(\n    pathOrText: string,\n    opts: IngestOptions = {},\n  ): Promise<Record<string, unknown>> {\n    let content: string;\n    let fmt: string;\n\n    let isFile = false;\n    try {\n      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();\n    } catch {\n      isFile = false;\n    }\n\n    if (isFile) {\n      const ext = extname(pathOrText).toLowerCase();\n      if (ext === \".pdf\") {\n        throw new CographError(\n          \"PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API.\",\n        );\n      }\n      content = readFileSync(pathOrText, \"utf-8\");\n      fmt = opts.contentType ?? EXT_FORMAT[ext] ?? \"text\";\n      if (fmt === \"csv\") {\n        return this.ingestCsv(content, opts.kg);\n      }\n    } else {\n      content = pathOrText;\n      fmt = opts.contentType ?? \"text\";\n    }\n\n    const body: Record<string, unknown> = {\n      content,\n      content_type: fmt,\n      source: \"client\",\n    };\n    if (opts.kg) body.kg_name = opts.kg;\n    return this.request(\"POST\", `${this.base()}/ingest`, body, 120_000);\n  }\n\n  private async ingestCsv(\n    content: string,\n    kgName: string | undefined,\n  ): Promise<Record<string, unknown>> {\n    const rows = parseCsv(content);\n    if (rows.length === 0) throw new CographError(\"CSV is empty\");\n    const headers = Object.keys(rows[0]!);\n\n    const schemaBody = {\n      headers,\n      sample_rows: rows.slice(0, 5),\n      total_rows: rows.length,\n    };\n    const mapping = await this.request<Record<string, unknown>>(\n      \"POST\",\n      `${this.base()}/ingest/csv/schema`,\n      schemaBody,\n      300_000,\n    );\n\n    const batchSize = 50;\n    let totalEntities = 0;\n    let totalTriples = 0;\n    for (let i = 0; i < rows.length; i += batchSize) {\n      const batch = rows.slice(i, i + batchSize);\n      const body: Record<string, unknown> = {\n        mapping,\n        rows: batch,\n        source: \"client\",\n      };\n      if (kgName) body.kg_name = kgName;\n      const result = await this.request<{\n        entities_resolved?: number;\n        triples_inserted?: number;\n      }>(\"POST\", `${this.base()}/ingest/csv/rows`, body, 300_000);\n      totalEntities += result.entities_resolved ?? 0;\n      totalTriples += result.triples_inserted ?? 0;\n    }\n\n    return {\n      entities_resolved: totalEntities,\n      triples_inserted: totalTriples,\n      mapping,\n    };\n  }\n\n  /** Ask a natural language question and return the parsed response. */\n  async ask(\n    question: string,\n    opts: AskOptions = {},\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { question };\n    if (opts.kg) body.kg_name = opts.kg;\n    if (opts.model) body.model = opts.model;\n    return this.request(\"POST\", `${this.base()}/ask`, body, 60_000);\n  }\n\n  /** List all knowledge graphs for the current tenant. */\n  async listKgs(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/kgs`,\n      undefined,\n      15_000,\n    );\n    if (Array.isArray(data)) return data as Array<Record<string, unknown>>;\n    if (data && typeof data === \"object\" && \"kgs\" in data) {\n      const kgs = (data as { kgs?: unknown }).kgs;\n      if (Array.isArray(kgs)) return kgs as Array<Record<string, unknown>>;\n    }\n    return [];\n  }\n\n  /** Create a knowledge graph. */\n  async createKg(\n    name: string,\n    description?: string,\n  ): Promise<Record<string, unknown>> {\n    const body: Record<string, unknown> = { name };\n    if (description) body.description = description;\n    return this.request(\"POST\", `${this.base()}/kgs`, body, 15_000);\n  }\n\n  /** Delete a knowledge graph by name. */\n  async deleteKg(name: string): Promise<Record<string, unknown>> {\n    return this.request(\n      \"DELETE\",\n      `${this.base()}/kgs/${encodeURIComponent(name)}`,\n      undefined,\n      30_000,\n    );\n  }\n\n  /** List ontology types. */\n  async ontologyTypes(): Promise<Array<Record<string, unknown>>> {\n    const data = await this.request<unknown>(\n      \"GET\",\n      `${this.base()}/ontology/types`,\n      undefined,\n      15_000,\n    );\n    return Array.isArray(data) ? 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+{"version":3,"sources":["../src/cli.ts"],"sourcesContent":["import { createInterface } from \"node:readline\";\nimport { Command } from \"commander\";\nimport { Client, CographError } from \"./client.js\";\n\nfunction client(): Client {\n  return new Client();\n}\n\nfunction printJson(data: unknown): void {\n  process.stdout.write(JSON.stringify(data, null, 2) + \"\\n\");\n}\n\nfunction fail(msg: string, code = 1): never {\n  process.stderr.write(msg.endsWith(\"\\n\") ? msg : msg + \"\\n\");\n  process.exit(code);\n}\n\nasync function withErrors<T>(fn: () => Promise<T>): Promise<T | void> {\n  try {\n    return await fn();\n  } catch (err) {\n    if (err instanceof CographError) {\n      fail(`Error: ${err.message}`);\n    }\n    fail(`Error: ${err instanceof Error ? err.message : String(err)}`);\n  }\n}\n\nasync function confirm(prompt: string): Promise<boolean> {\n  const rl = createInterface({ input: process.stdin, output: process.stdout });\n  return new Promise((resolve) => {\n    rl.question(`${prompt} [y/N] `, (ans) => {\n      rl.close();\n      resolve(ans.trim().toLowerCase() === \"y\");\n    });\n  });\n}\n\nconst program = new Command();\nprogram\n  .name(\"cograph\")\n  .description(\"Cograph Knowledge Graph CLI\")\n  .version(\"0.1.0\");\n\n// ---------------------------------------------------------------------------\n// kg\n// ---------------------------------------------------------------------------\n\nconst kg = program.command(\"kg\").description(\"Manage knowledge graphs\");\n\nkg.command(\"list\")\n  .description(\"List knowledge graphs\")\n  .action(async () => {\n    await withErrors(async () => {\n      const kgs = await client().listKgs();\n      if (!kgs.length) {\n        process.stdout.write(\n          \"No knowledge graphs. Create one with: cograph kg create <name>\\n\",\n        );\n        return;\n      }\n      for (const k of kgs) {\n        const name = String(k.name ?? \"?\");\n        const triples = Number(k.triple_count ?? 0);\n        const desc = k.description ? ` — ${k.description}` : \"\";\n        const padName = name.padEnd(20, \" \");\n        const padTriples = String(triples).padStart(6, \" \");\n        process.stdout.write(`  ${padName} ${padTriples} triples${desc}\\n`);\n      }\n    });\n  });\n\nkg.command(\"create <name>\")\n  .description(\"Create a knowledge graph\")\n  .option(\"-d, --description <text>\", \"Description\")\n  .action(async (name: string, opts: { description?: string }) => {\n    await withErrors(async () => {\n      const created = await client().createKg(name, opts.description);\n      process.stdout.write(`Created knowledge graph: ${created.name ?? name}\\n`);\n    });\n  });\n\nkg.command(\"delete <name>\")\n  .description(\"Delete a knowledge graph\")\n  .action(async (name: string) => {\n    await withErrors(async () => {\n      await client().deleteKg(name);\n      process.stdout.write(`Deleted knowledge graph: ${name}\\n`);\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// ingest\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"ingest [file]\")\n  .description(\"Ingest data from a file or --text\")\n  .option(\"-t, --text <text>\", \"Inline text to ingest\")\n  .option(\"--kg <name>\", \"Target knowledge graph name\")\n  .option(\n    \"-f, --format <fmt>\",\n    \"Override format detection (text|csv|json)\",\n  )\n  .action(\n    async (\n      file: string | undefined,\n      opts: { text?: string; kg?: string; format?: string },\n    ) => {\n      await withErrors(async () => {\n        const c = client();\n        if (opts.text) {\n          process.stdout.write(\n            `Ingesting text (${opts.text.length.toLocaleString()} chars)...\\n`,\n          );\n          const result = await c.ingest(opts.text, {\n            kg: opts.kg,\n            contentType: opts.format ?? 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` (subClassOf ${t.parent_type})`\n          : \"\";\n        const desc = t.description ? ` — ${t.description}` : \"\";\n        process.stdout.write(`  ${t.name}${parent}${desc}\\n`);\n        const attrs = (t.attributes ?? []) as Array<Record<string, unknown>>;\n        for (const a of attrs) {\n          process.stdout.write(\n            `    .${a.name} (${a.datatype ?? \"string\"})\\n`,\n          );\n        }\n      }\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// clear\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"clear\")\n  .description(\"Clear data\")\n  .option(\"--kg <name>\", \"Clear a specific knowledge graph\")\n  .option(\n    \"--include-ontology\",\n    \"Also clear the ontology (only meaningful when --kg is omitted)\",\n    false,\n  )\n  .option(\"-y, --yes\", \"Skip confirmation\", false)\n  .action(\n    async (opts: { kg?: string; includeOntology?: boolean; yes?: boolean }) => {\n      await withErrors(async () => {\n        let msg: string;\n        if (opts.kg) {\n          msg = `Clear KG '${opts.kg}'?`;\n        } else if (opts.includeOntology) {\n          msg = \"Clear EVERYTHING including ontology?\";\n        } else {\n          msg = \"Clear all instance data (ontology preserved)?\";\n        }\n\n        if (!opts.yes) {\n          const ok = await confirm(msg);\n          if (!ok) {\n            process.stdout.write(\"Cancelled.\\n\");\n            return;\n          }\n        }\n\n        const c = client();\n        if (opts.kg) {\n          await c.deleteKg(opts.kg);\n          process.stdout.write(`Cleared KG: ${opts.kg}\\n`);\n          return;\n        }\n\n        // Bulk-clear via /query + DELETE /triples — same loop the Python CLI uses.\n        const tenant = c.tenant;\n        const baseUrl = `${c.baseUrl}/graphs/${tenant}`;\n        const headers: Record<string, string> = {\n          \"Content-Type\": \"application/json\",\n        };\n        if (c.apiKey) headers[\"X-API-Key\"] = c.apiKey;\n\n        const filters = opts.includeOntology\n          ? \"\"\n          : `FILTER(CONTAINS(STR(?s), '/entities/') || CONTAINS(STR(?s), '/onto/') || CONTAINS(STR(?s), '/kgs/'))`;\n        const query = `SELECT ?s ?p ?o FROM <https://omnix.dev/graphs/${tenant}> WHERE { ?s ?p ?o . ${filters} } LIMIT 1000`;\n\n        process.stdout.write(\"Clearing...\\n\");\n        let deleted = 0;\n        for (let i = 0; i < 50; i++) {\n          const fetchRes = await fetch(`${baseUrl}/query`, {\n            method: \"POST\",\n            headers,\n            body: JSON.stringify({ query }),\n          });\n          if (!fetchRes.ok) break;\n          const data = (await fetchRes.json()) as {\n            bindings?: Array<Record<string, unknown>>;\n          };\n          const bindings = data.bindings ?? [];\n          if (!bindings.length) break;\n          const triples = bindings\n            .filter((b) => b.s)\n            .map((b) => ({\n              subject: b.s,\n              predicate: b.p,\n              object: b.o,\n            }));\n          for (let j = 0; j < triples.length; j += 100) {\n            await fetch(`${baseUrl}/triples`, {\n              method: \"DELETE\",\n              headers,\n              body: JSON.stringify({ triples: triples.slice(j, j + 100) }),\n            });\n          }\n          deleted += triples.length;\n        }\n        process.stdout.write(`Deleted ${deleted} triples\\n`);\n      });\n    },\n  );\n\n// ---------------------------------------------------------------------------\n// login\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"login\")\n  .description(\"Sign in via your browser and save an API key\")\n  .action(async () => {\n    const { runLogin } = await import(\"./login.js\");\n    await runLogin();\n  });\n\n// ---------------------------------------------------------------------------\n// shell\n// ---------------------------------------------------------------------------\n\nprogram\n  .command(\"shell\")\n  .description(\"Start an interactive REPL\")\n  .option(\"--kg <name>\", \"Knowledge graph to use\")\n  .action(async (opts: { kg?: string }) => {\n    const { runShell } = await import(\"./shell.js\");\n    await runShell({ kg: opts.kg });\n  });\n\n// ---------------------------------------------------------------------------\n\nprogram.parseAsync(process.argv).catch((err) => {\n  fail(`Error: ${err instanceof Error ? err.message : String(err)}`);\n});\n\n// silence unused import warning if ever needed\nvoid 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package/dist/index.js

@@ -1,6 +1,32 @@
 // src/client.ts
-import { existsSync, readFileSync, statSync } from "fs";
+import { existsSync as existsSync2, readFileSync as readFileSync2, statSync } from "fs";
 import { extname } from "path";
+
+// src/config.ts
+import { homedir } from "os";
+import { join } from "path";
+import { existsSync, mkdirSync, readFileSync, writeFileSync, chmodSync } from "fs";
+function configDir() {
+  return join(homedir(), ".cograph");
+}
+function configPath() {
+  return join(configDir(), "config.json");
+}
+function readConfig() {
+  const path = configPath();
+  if (!existsSync(path)) return {};
+  try {
+    const raw = readFileSync(path, "utf-8");
+    const parsed = JSON.parse(raw);
+    if (parsed && typeof parsed === "object") {
+      return parsed;
+    }
+  } catch {
+  }
+  return {};
+}
+
+// src/client.ts
 var CographError = class extends Error {
   status;
   body;
@@ -84,10 +110,11 @@ var Client = class {
   baseUrl;
   tenant;
   constructor(opts = {}) {
-    this.apiKey = opts.apiKey ?? envVar("API_KEY");
-    const url = opts.baseUrl ?? envVar("API_URL") ?? "https://api.cograph.cloud";
+    const cfg = readConfig();
+    this.apiKey = opts.apiKey ?? envVar("API_KEY") ?? cfg.apiKey;
+    const url = opts.baseUrl ?? envVar("API_URL") ?? cfg.apiUrl ?? "https://api.cograph.cloud";
     this.baseUrl = url.replace(/\/+$/, "");
-    this.tenant = opts.tenant ?? envVar("TENANT") ?? "demo-tenant";
+    this.tenant = opts.tenant ?? envVar("TENANT") ?? cfg.tenant ?? "demo-tenant";
   }
   headers() {
     const h = { "Content-Type": "application/json" };
@@ -154,7 +181,7 @@ var Client = class {
     let fmt;
     let isFile = false;
     try {
-      isFile = existsSync(pathOrText) && statSync(pathOrText).isFile();
+      isFile = existsSync2(pathOrText) && statSync(pathOrText).isFile();
     } catch {
       isFile = false;
     }
@@ -165,7 +192,7 @@ var Client = class {
           "PDF ingest not yet supported in the Node CLI; use the Python CLI or POST raw bytes to the API."
         );
       }
-      content = readFileSync(pathOrText, "utf-8");
+      content = readFileSync2(pathOrText, "utf-8");
       fmt = opts.contentType ?? EXT_FORMAT[ext] ?? "text";
       if (fmt === "csv") {
         return this.ingestCsv(content, opts.kg);

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/client.ts"],"sourcesContent":["import { existsSync, readFileSync, statSync } from \"node:fs\";\nimport { extname } from \"node:path\";\n\nexport class CographError extends Error {\n  status?: number;\n  body?: string;\n\n  constructor(message: string, opts?: { status?: number; body?: string }) {\n    super(message);\n    this.name = \"CographError\";\n    this.status = opts?.status;\n    this.body = opts?.body;\n  }\n}\n\nexport interface ClientOptions {\n  apiKey?: string;\n  baseUrl?: string;\n  tenant?: string;\n}\n\nexport interface IngestOptions {\n  kg?: string;\n  contentType?: \"text\" | \"csv\" | \"json\" | string;\n}\n\nexport interface AskOptions {\n  kg?: string;\n  model?: string;\n}\n\nfunction envVar(name: string, fallback?: string): string | undefined {\n  // Prefer COGRAPH_, fall back to OMNIX_ so old configs keep working.\n  return (\n    process.env[`COGRAPH_${name}`] ||\n    process.env[`OMNIX_${name}`] ||\n    fallback\n  );\n}\n\nconst EXT_FORMAT: Record<string, string> = {\n  \".csv\": \"csv\",\n  \".json\": \"json\",\n  \".jsonl\": \"json\",\n  \".txt\": \"text\",\n};\n\n/**\n * Parse a CSV string into an array of row objects.\n *\n * Minimal RFC-4180-ish parser: handles quoted fields with commas, escaped\n * quotes (`\"\"`), CRLF/LF line endings. 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package/dist/login-Z3IUOAOB.js

@@ -0,0 +1,126 @@
+#!/usr/bin/env node
+import {
+  configPathForDisplay,
+  writeConfig
+} from "./chunk-7VVBEUZQ.js";
+
+// src/login.ts
+import { createServer } from "http";
+import { randomBytes } from "crypto";
+import { hostname } from "os";
+import { spawn } from "child_process";
+import { stdout } from "process";
+var WEB_URL = process.env.COGRAPH_WEB_URL || "https://cograph.cloud";
+async function runLogin() {
+  const state = randomBytes(24).toString("hex");
+  const host = hostname();
+  const result = await new Promise((resolve) => {
+    const server = createServer((req, res) => handleRequest(req, res, state, resolve));
+    server.on("error", (err) => resolve({ error: err.message }));
+    server.listen(0, "127.0.0.1", () => {
+      const addr = server.address();
+      if (!addr || typeof addr === "string") {
+        resolve({ error: "Failed to bind local callback server" });
+        return;
+      }
+      const port = addr.port;
+      const callback = `http://127.0.0.1:${port}`;
+      const url = `${WEB_URL}/cli-login?callback=${encodeURIComponent(
+        callback
+      )}&state=${state}&hostname=${encodeURIComponent(host)}`;
+      stdout.write("\n");
+      stdout.write(`  Opening ${url}
+`);
+      stdout.write(`  If the browser doesn't open, visit that URL manually.
+`);
+      stdout.write(`  Waiting for sign-in callback...
+
+`);
+      openBrowser(url);
+      setTimeout(
+        () => resolve({ error: "Timed out waiting for browser callback (5 min)" }),
+        5 * 6e4
+      ).unref();
+    });
+    const origResolve = resolve;
+    resolve = ((value) => {
+      server.close();
+      origResolve(value);
+    });
+  });
+  if ("error" in result) {
+    stdout.write(`  Login failed: ${result.error}
+`);
+    process.exit(1);
+  }
+  if (!result.apiKey) {
+    stdout.write(`  Login failed: callback did not include an apiKey
+`);
+    process.exit(1);
+  }
+  writeConfig({
+    apiKey: result.apiKey,
+    tenant: result.userId,
+    email: result.email ?? void 0
+  });
+  stdout.write(
+    `  \u2713 Logged in${result.email ? ` as ${result.email}` : ""}. Key saved to ${configPathForDisplay()}
+
+`
+  );
+}
+function handleRequest(req, res, expectedState, resolve) {
+  res.setHeader("Access-Control-Allow-Origin", WEB_URL);
+  res.setHeader("Access-Control-Allow-Methods", "POST, OPTIONS");
+  res.setHeader("Access-Control-Allow-Headers", "Content-Type");
+  if (req.method === "OPTIONS") {
+    res.writeHead(204);
+    res.end();
+    return;
+  }
+  if (req.method !== "POST") {
+    res.writeHead(405);
+    res.end("Method not allowed");
+    return;
+  }
+  let body = "";
+  req.on("data", (chunk) => {
+    body += chunk;
+    if (body.length > 64 * 1024) {
+      req.destroy();
+    }
+  });
+  req.on("end", () => {
+    let payload;
+    try {
+      payload = JSON.parse(body);
+    } catch {
+      res.writeHead(400);
+      res.end("Invalid JSON");
+      return;
+    }
+    if (payload.state !== expectedState) {
+      res.writeHead(400);
+      res.end("State mismatch");
+      resolve({ error: "State mismatch \u2014 possible CSRF, login aborted" });
+      return;
+    }
+    res.writeHead(200, { "Content-Type": "application/json" });
+    res.end(JSON.stringify({ ok: true }));
+    resolve(payload);
+  });
+}
+function openBrowser(url) {
+  const platform = process.platform;
+  const cmd = platform === "darwin" ? "open" : platform === "win32" ? "cmd" : "xdg-open";
+  const args = platform === "win32" ? ["/c", "start", "", url] : [url];
+  try {
+    const child = spawn(cmd, args, { stdio: "ignore", detached: true });
+    child.unref();
+  } catch {
+  }
+}
+export {
+  runLogin
+};
+//# sourceMappingURL=login-Z3IUOAOB.js.map

package/dist/login-Z3IUOAOB.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/login.ts"],"sourcesContent":["import { createServer, type IncomingMessage, type ServerResponse } from \"node:http\";\nimport { randomBytes } from \"node:crypto\";\nimport { hostname } from \"node:os\";\nimport { spawn } from \"node:child_process\";\nimport { stdout } from \"node:process\";\nimport { writeConfig, configPathForDisplay } from \"./config.js\";\n\nconst WEB_URL = process.env.COGRAPH_WEB_URL || \"https://cograph.cloud\";\n\ninterface CallbackPayload {\n  state?: string;\n  apiKey?: string;\n  name?: string;\n  userId?: string;\n  email?: string | null;\n}\n\n/**\n * Browser-redirect login flow. Starts a one-shot local HTTP server, opens\n * the user's browser to /cli-login on the web app, and waits for the page\n * to POST back the API key. Saves the result to ~/.cograph/config.json.\n */\nexport async function runLogin(): Promise<void> {\n  const state = randomBytes(24).toString(\"hex\");\n  const host = hostname();\n\n  const result = await new Promise<CallbackPayload | { error: string }>((resolve) => {\n    const server = createServer((req, res) => handleRequest(req, res, state, resolve));\n    server.on(\"error\", (err) => resolve({ error: err.message }));\n    server.listen(0, \"127.0.0.1\", () => {\n      const addr = server.address();\n      if (!addr || typeof addr === \"string\") {\n        resolve({ error: \"Failed to bind local callback server\" });\n        return;\n      }\n      const port = addr.port;\n      const callback = `http://127.0.0.1:${port}`;\n      const url = `${WEB_URL}/cli-login?callback=${encodeURIComponent(\n        callback,\n      )}&state=${state}&hostname=${encodeURIComponent(host)}`;\n\n      stdout.write(\"\\n\");\n      stdout.write(`  Opening ${url}\\n`);\n      stdout.write(`  If the browser doesn't open, visit that URL manually.\\n`);\n      stdout.write(`  Waiting for sign-in callback...\\n\\n`);\n      openBrowser(url);\n\n      // Stop waiting after 5 minutes so we don't hang forever.\n      setTimeout(\n        () => resolve({ error: \"Timed out waiting for browser callback (5 min)\" }),\n        5 * 60_000,\n      ).unref();\n    });\n\n    // Close the server once we have a result.\n    const origResolve = resolve;\n    resolve = ((value) => {\n      server.close();\n      origResolve(value);\n    }) as typeof resolve;\n  });\n\n  if (\"error\" in result) {\n    stdout.write(`  Login failed: ${result.error}\\n`);\n    process.exit(1);\n  }\n\n  if (!result.apiKey) {\n    stdout.write(`  Login failed: callback did not include an apiKey\\n`);\n    process.exit(1);\n  }\n\n  writeConfig({\n    apiKey: result.apiKey,\n    tenant: result.userId,\n    email: result.email ?? undefined,\n  });\n\n  stdout.write(\n    `  ✓ Logged in${result.email ? ` as ${result.email}` : \"\"}. Key saved to ${configPathForDisplay()}\\n\\n`,\n  );\n}\n\nfunction handleRequest(\n  req: IncomingMessage,\n  res: ServerResponse,\n  expectedState: string,\n  resolve: (value: CallbackPayload | { error: string }) => void,\n): void {\n  // CORS — the page is on cograph.cloud, posting to localhost.\n  res.setHeader(\"Access-Control-Allow-Origin\", WEB_URL);\n  res.setHeader(\"Access-Control-Allow-Methods\", \"POST, OPTIONS\");\n  res.setHeader(\"Access-Control-Allow-Headers\", \"Content-Type\");\n\n  if (req.method === \"OPTIONS\") {\n    res.writeHead(204);\n    res.end();\n    return;\n  }\n\n  if (req.method !== \"POST\") {\n    res.writeHead(405);\n    res.end(\"Method not allowed\");\n    return;\n  }\n\n  let body = \"\";\n  req.on(\"data\", (chunk) => {\n    body += chunk;\n    if (body.length > 64 * 1024) {\n      // 64 KB cap — anything larger is suspicious.\n      req.destroy();\n    }\n  });\n  req.on(\"end\", () => {\n    let payload: CallbackPayload;\n    try {\n      payload = JSON.parse(body) as CallbackPayload;\n    } catch {\n      res.writeHead(400);\n      res.end(\"Invalid JSON\");\n      return;\n    }\n\n    if (payload.state !== expectedState) {\n      res.writeHead(400);\n      res.end(\"State mismatch\");\n      resolve({ error: \"State mismatch — possible CSRF, login aborted\" });\n      return;\n    }\n\n    res.writeHead(200, { \"Content-Type\": \"application/json\" });\n    res.end(JSON.stringify({ ok: true }));\n    resolve(payload);\n  });\n}\n\nfunction openBrowser(url: string): void {\n  const platform = process.platform;\n  const cmd = platform === \"darwin\" ? \"open\" : platform === \"win32\" ? \"cmd\" : \"xdg-open\";\n  const args = platform === \"win32\" ? 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