cognitive-core 0.0.2 → 0.1.2

package/dist/memory/knowledge-bank.js.map

@@ -0,0 +1 @@
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package/dist/memory/knowledge-defrag.d.ts

@@ -0,0 +1,49 @@
+import type { DefragConfig } from '../types/config.js';
+import type { DefragResult } from '../types/knowledge.js';
+import type { KnowledgeBank } from './knowledge-bank.js';
+/**
+ * KnowledgeDefragmenter — orchestrates the 7-step defragmentation cycle.
+ *
+ * Steps:
+ * 1. Inbox processing
+ * 2. Consolidation (observations → entity notes)
+ * 3. Contradiction detection
+ * 4. Graph rebuild
+ * 5. Domain summary regeneration
+ * 6. Staleness sweep (decay)
+ * 7. Manifest update
+ */
+export declare class KnowledgeDefragmenter {
+    private bank;
+    private defragConfig;
+    constructor(bank: KnowledgeBank, defragConfig: DefragConfig);
+    /**
+     * Check whether defragmentation should be triggered.
+     */
+    shouldDefragment(): Promise<boolean>;
+    /**
+     * Run the full 7-step defragmentation cycle.
+     */
+    defragment(): Promise<DefragResult>;
+    /**
+     * Step 2: Consolidate observations about the same entity into entity notes.
+     * Groups observations by entity name; creates/updates entity notes when
+     * the count meets the consolidation threshold.
+     */
+    private consolidate;
+    /**
+     * Step 3: Detect contradictions via pairwise text similarity within domains.
+     * Flags pairs with similarity > 0.7 for review.
+     */
+    private detectContradictions;
+    /**
+     * Step 5: Regenerate domain summaries by concatenating entity names and
+     * top observations sorted by confidence.
+     */
+    private regenerateDomainSummaries;
+    /**
+     * Step 7: Write manifest and domain-index files for fast lookups.
+     */
+    private updateManifest;
+}
+//# sourceMappingURL=knowledge-defrag.d.ts.map

package/dist/memory/knowledge-defrag.d.ts.map

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package/dist/memory/knowledge-defrag.js

@@ -0,0 +1,257 @@
+import { writeFile, mkdir } from 'node:fs/promises';
+import { join } from 'node:path';
+import { createEntityNote, createDomainSummary } from '../types/knowledge.js';
+import { textSimilarity } from '../utils/similarity.js';
+/**
+ * KnowledgeDefragmenter — orchestrates the 7-step defragmentation cycle.
+ *
+ * Steps:
+ * 1. Inbox processing
+ * 2. Consolidation (observations → entity notes)
+ * 3. Contradiction detection
+ * 4. Graph rebuild
+ * 5. Domain summary regeneration
+ * 6. Staleness sweep (decay)
+ * 7. Manifest update
+ */
+export class KnowledgeDefragmenter {
+    bank;
+    defragConfig;
+    constructor(bank, defragConfig) {
+        this.bank = bank;
+        this.defragConfig = defragConfig;
+    }
+    /**
+     * Check whether defragmentation should be triggered.
+     */
+    async shouldDefragment() {
+        return this.bank.shouldDefragment();
+    }
+    /**
+     * Run the full 7-step defragmentation cycle.
+     */
+    async defragment() {
+        // 1. Inbox processing
+        const inbox = await this.bank.processInbox();
+        // 2. Graph rebuild (baseline from current disk state)
+        const preNotes = await this.bank.getAllNotes();
+        this.bank.graph.rebuildAll(preNotes);
+        // 3. Consolidation
+        const consolidated = await this.consolidate();
+        // 4. Contradiction detection
+        const contradictions = await this.detectContradictions();
+        // 5. Domain summary regeneration
+        const domainSummariesRegenerated = await this.regenerateDomainSummaries();
+        // 6. Staleness sweep
+        const decay = await this.bank.applyDecay();
+        // 7. Manifest update
+        await this.updateManifest();
+        return {
+            inbox,
+            consolidated,
+            contradictions,
+            graphRebuilt: true,
+            domainSummariesRegenerated,
+            decay,
+        };
+    }
+    /**
+     * Step 2: Consolidate observations about the same entity into entity notes.
+     * Groups observations by entity name; creates/updates entity notes when
+     * the count meets the consolidation threshold.
+     */
+    async consolidate() {
+        if (!this.defragConfig.autoConsolidate)
+            return 0;
+        const allNotes = await this.bank.getAllNotes();
+        const observations = allNotes.filter((n) => n.frontmatter.type === 'observation');
+        // Group observations by entity
+        const entityGroups = new Map();
+        for (const obs of observations) {
+            for (const entity of obs.frontmatter.entities) {
+                const key = entity.toLowerCase();
+                if (!entityGroups.has(key)) {
+                    entityGroups.set(key, []);
+                }
+                entityGroups.get(key).push(obs);
+            }
+        }
+        let consolidated = 0;
+        for (const [entityName, notes] of entityGroups) {
+            if (notes.length < this.defragConfig.consolidationThreshold)
+                continue;
+            // Check if entity note already exists
+            const existingEntity = await this.bank.getEntity(entityName);
+            if (existingEntity) {
+                // Append new observations to existing entity
+                const newContent = notes
+                    .map((n) => `- ${n.frontmatter.id}: ${n.body.slice(0, 200)}`)
+                    .join('\n');
+                await this.bank.updateEntity(entityName, {
+                    entityId: entityName,
+                    section: `## Consolidated Observations\n\n${newContent}`,
+                    trajectoryId: 'defrag',
+                });
+            }
+            else {
+                // Create new entity note
+                const body = notes
+                    .map((n) => `## ${n.frontmatter.id}\n\n${n.body.slice(0, 200)}`)
+                    .join('\n\n');
+                const domains = [
+                    ...new Set(notes.flatMap((n) => n.frontmatter.domain)),
+                ];
+                const entityNote = createEntityNote({
+                    entityName,
+                    body,
+                    domain: domains,
+                    source: { origin: 'extracted' },
+                });
+                await this.bank.addObservation(entityNote);
+                // Add 'generalizes' edges from entity to each observation
+                const semanticLayer = this.bank.graph.getLayer('semantic');
+                if (semanticLayer) {
+                    for (const obs of notes) {
+                        semanticLayer.addEdge({
+                            from: entityNote.frontmatter.id,
+                            to: obs.frontmatter.id,
+                            relation: 'generalizes',
+                            weight: 0.7,
+                            created: new Date().toISOString(),
+                        });
+                    }
+                }
+            }
+            consolidated += notes.length;
+        }
+        return consolidated;
+    }
+    /**
+     * Step 3: Detect contradictions via pairwise text similarity within domains.
+     * Flags pairs with similarity > 0.7 for review.
+     */
+    async detectContradictions() {
+        const allNotes = await this.bank.getAllNotes();
+        const observations = allNotes.filter((n) => n.frontmatter.type === 'observation');
+        // Group by domain
+        const domainGroups = new Map();
+        for (const obs of observations) {
+            for (const domain of obs.frontmatter.domain) {
+                if (!domainGroups.has(domain)) {
+                    domainGroups.set(domain, []);
+                }
+                domainGroups.get(domain).push(obs);
+            }
+        }
+        let contradictions = 0;
+        for (const [, notes] of domainGroups) {
+            // Pairwise comparison
+            for (let i = 0; i < notes.length; i++) {
+                for (let j = i + 1; j < notes.length; j++) {
+                    const similarity = textSimilarity(notes[i].body, notes[j].body);
+                    if (similarity > 0.7) {
+                        // Don't re-flag pairs that already have contradicts edges
+                        const entityLayer = this.bank.graph.getLayer('entity');
+                        if (entityLayer) {
+                            const existingEdges = entityLayer.getEdges(notes[i].frontmatter.id, 'outgoing');
+                            const alreadyFlagged = existingEdges.some((e) => e.to === notes[j].frontmatter.id &&
+                                e.relation === 'contradicts');
+                            if (alreadyFlagged)
+                                continue;
+                        }
+                        const contradiction = {
+                            existingNoteId: notes[i].frontmatter.id,
+                            newObservation: notes[j],
+                            conflictDescription: `High similarity (${similarity.toFixed(2)}) detected`,
+                            resolution: 'review',
+                        };
+                        await this.bank.recordContradiction(contradiction);
+                        contradictions++;
+                    }
+                }
+            }
+        }
+        return contradictions;
+    }
+    /**
+     * Step 5: Regenerate domain summaries by concatenating entity names and
+     * top observations sorted by confidence.
+     */
+    async regenerateDomainSummaries() {
+        if (!this.defragConfig.autoRegenerateSummaries)
+            return 0;
+        const allNotes = await this.bank.getAllNotes();
+        // Group by domain
+        const domainData = new Map();
+        for (const note of allNotes) {
+            if (note.frontmatter.type === 'domain-summary')
+                continue;
+            for (const domain of note.frontmatter.domain) {
+                if (!domainData.has(domain)) {
+                    domainData.set(domain, { entities: new Set(), observations: [] });
+                }
+                const data = domainData.get(domain);
+                if (note.frontmatter.type === 'entity') {
+                    data.entities.add(note.frontmatter.id);
+                }
+                else {
+                    data.observations.push(note);
+                }
+            }
+        }
+        let regenerated = 0;
+        for (const [domain, data] of domainData) {
+            // Sort observations by confidence descending, take top 10
+            const topObs = [...data.observations]
+                .sort((a, b) => b.frontmatter.confidence - a.frontmatter.confidence)
+                .slice(0, 10);
+            const entityList = data.entities.size > 0
+                ? `## Entities\n\n${[...data.entities].join(', ')}`
+                : '';
+            const observationList = topObs.length > 0
+                ? `## Key Observations\n\n${topObs.map((o) => `- **${o.frontmatter.id}**: ${o.body.slice(0, 100)}`).join('\n')}`
+                : '';
+            const body = [entityList, observationList].filter(Boolean).join('\n\n');
+            const summary = createDomainSummary({
+                domainName: domain,
+                body,
+                entities: [...data.entities],
+                source: { origin: 'extracted' },
+            });
+            await this.bank.addObservation(summary);
+            regenerated++;
+        }
+        return regenerated;
+    }
+    /**
+     * Step 7: Write manifest and domain-index files for fast lookups.
+     */
+    async updateManifest() {
+        const indexDir = this.bank.getIndexDir();
+        await mkdir(indexDir, { recursive: true });
+        const allNotes = await this.bank.getAllNotes();
+        // Build manifest: id → { path, type, domain, confidence }
+        const manifest = {};
+        // Build domain index: domain → note IDs
+        const domainIndex = {};
+        for (const note of allNotes) {
+            manifest[note.frontmatter.id] = {
+                path: note.filePath,
+                type: note.frontmatter.type,
+                domain: note.frontmatter.domain,
+                confidence: note.frontmatter.confidence,
+            };
+            for (const domain of note.frontmatter.domain) {
+                if (!domainIndex[domain]) {
+                    domainIndex[domain] = [];
+                }
+                domainIndex[domain].push(note.frontmatter.id);
+            }
+        }
+        await Promise.all([
+            writeFile(join(indexDir, 'manifest.json'), JSON.stringify(manifest, null, 2), 'utf-8'),
+            writeFile(join(indexDir, 'domain-index.json'), JSON.stringify(domainIndex, null, 2), 'utf-8'),
+        ]);
+    }
+}
+//# sourceMappingURL=knowledge-defrag.js.map

package/dist/memory/knowledge-defrag.js.map

@@ -0,0 +1 @@
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package/dist/memory/knowledge-graph.d.ts

@@ -0,0 +1,41 @@
+import type { GraphNode, GraphEdge, GraphLayerOperations, GraphNodeFilter, NeighborOptions, KnowledgeGraphManagerInterface, GraphConfig } from '../types/knowledge-graph.js';
+import type { GraphLayerName, KnowledgeNote } from '../types/knowledge.js';
+/**
+ * KnowledgeGraphManager
+ *
+ * Manages a multi-layer graph overlay over the knowledge note filesystem.
+ * All layers share the same node set. Each layer maintains its own edges.
+ * The graph is a derived index — it can be rebuilt from frontmatter.
+ */
+export declare class KnowledgeGraphManager implements KnowledgeGraphManagerInterface {
+    private nodes;
+    private layers;
+    private config;
+    constructor(config?: Partial<GraphConfig>);
+    private initLayers;
+    getLayer(name: GraphLayerName): GraphLayerOperations | null;
+    addNode(node: GraphNode): void;
+    removeNode(nodeId: string): void;
+    getNode(nodeId: string): GraphNode | undefined;
+    getAllNodes(): GraphNode[];
+    neighbors(nodeId: string, options?: NeighborOptions): GraphNode[];
+    pathBetween(fromId: string, toId: string, options?: {
+        layers?: GraphLayerName[];
+    }): Array<{
+        node: GraphNode;
+        edge: GraphEdge;
+        layer: GraphLayerName;
+    }> | null;
+    filterNodes(filter: GraphNodeFilter): GraphNode[];
+    crossSystemLinks(nodeId: string): GraphEdge[];
+    rebuildAll(notes: KnowledgeNote[]): void;
+    private noteToGraphNode;
+    loadFromDisk(dir: string): Promise<void>;
+    saveToDisk(dir: string): Promise<void>;
+    getStats(): {
+        nodeCount: number;
+        edgeCountByLayer: Record<string, number>;
+        enabledLayers: string[];
+    };
+}
+//# sourceMappingURL=knowledge-graph.d.ts.map

package/dist/memory/knowledge-graph.d.ts.map

@@ -0,0 +1 @@
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