codymaster 4.4.5 → 4.5.2

package/skills/marketplace-report-crawler/scripts/setup-folders.sh

@@ -1,83 +0,0 @@
-#!/bin/bash
-# ============================================================================
-# Marketplace Report Folder Structure Generator
-# ============================================================================
-# Usage: bash setup-folders.sh [output_root] [yearMonth]
-# Example: bash setup-folders.sh ./data 202602
-#
-# Creates organized folder tree:
-#   {root}/{Platform}/{Brand}/{report_type}/
-#   Files will be saved as: {YYYYMM}_{Brand}_{report_type}.{ext}
-# ============================================================================
-
-set -e
-
-# --- Configuration ---
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-CONFIG_DIR="${SCRIPT_DIR}/../config"
-OUTPUT_ROOT="${1:-/Users/todyle/Builder/Boxme/AutomateReport/data}"
-YEAR_MONTH="${2:-$(date -v-1m +%Y%m 2>/dev/null || date -d '-1 month' +%Y%m)}"
-
-echo "=============================================="
-echo "📁 Marketplace Report Folder Generator"
-echo "=============================================="
-echo "📂 Output Root: ${OUTPUT_ROOT}"
-echo "📅 Period: ${YEAR_MONTH}"
-echo ""
-
-# --- Read configs using Node.js (cross-platform JSON parsing) ---
-if ! command -v node &> /dev/null; then
-  echo "❌ Node.js is required. Please install it first."
-  exit 1
-fi
-
-# Extract accounts and report types from JSON configs
-ACCOUNTS=$(node -e "
-const accounts = require('${CONFIG_DIR}/accounts.json').accounts;
-const reportTypes = require('${CONFIG_DIR}/report-types.json').reportTypes;
-
-// For each active account, list platform + report types
-accounts.filter(a => a.active).forEach(account => {
-  account.platforms.forEach(platform => {
-    const reports = reportTypes
-      .filter(r => r.platform === platform && r.status !== 'disabled')
-      .map(r => r.id);
-    // Deduplicate report IDs
-    const uniqueReports = [...new Set(reports)];
-    uniqueReports.forEach(reportId => {
-      console.log(\`\${platform}|\${account.brandSlug}|\${reportId}\`);
-    });
-  });
-});
-")
-
-# --- Create folders ---
-FOLDER_COUNT=0
-
-echo "$ACCOUNTS" | while IFS='|' read -r platform brand reportType; do
-  # Capitalize platform name for folder
-  PLATFORM_DIR=$(echo "$platform" | awk '{print toupper(substr($0,1,1)) tolower(substr($0,2))}')
-  
-  FOLDER_PATH="${OUTPUT_ROOT}/${PLATFORM_DIR}/${brand}/${reportType}"
-  
-  if [ ! -d "$FOLDER_PATH" ]; then
-    mkdir -p "$FOLDER_PATH"
-    echo "  ✅ Created: ${PLATFORM_DIR}/${brand}/${reportType}/"
-  else
-    echo "  ⏭️  Exists:  ${PLATFORM_DIR}/${brand}/${reportType}/"
-  fi
-  
-  FOLDER_COUNT=$((FOLDER_COUNT + 1))
-done
-
-echo ""
-echo "=============================================="
-echo "✅ Folder structure ready!"
-echo ""
-echo "📝 File naming convention:"
-echo "   {YYYYMM}_{Brand}_{report_type}.{ext}"
-echo "   Example: ${YEAR_MONTH}_Vita_Dairy_platform_income.xlsx"
-echo ""
-echo "📂 Full path example:"
-echo "   ${OUTPUT_ROOT}/Shopee/Vita_Dairy/platform_income/${YEAR_MONTH}_Vita_Dairy_platform_income.xlsx"
-echo "=============================================="

package/skills/medical-research/SKILL.md

@@ -1,194 +0,0 @@
----
-name: medical-research
-description: Evidence-based medical writing protocol for OB/GYN research articles. Ensures citation standards, Level of Evidence grading, anti-hallucination rules, and clinical accuracy markers. Use when generating or reviewing medical content.
-allowed-tools: Read, Write, Edit, Bash
-version: 1.0
-priority: HIGH
----
-
-# Medical Research — Evidence-Based Writing Protocol
-
-> **Mandatory** when writing medical articles for the OB/GYN RND system.
-
----
-
-## 1. Evidence Grading — Oxford CEBM
-
-Every recommendation/protocol in articles **MUST** include Level of Evidence:
-
-| Level | Evidence Type | In-Article Notation |
-|-------|--------------|---------------------|
-| **I** | Systematic Review / Meta-analysis / Large RCT | `[LoE: I]` |
-| **II** | Small RCT / High-quality Cohort study | `[LoE: II]` |
-| **III** | Case-control study / Retrospective Cohort | `[LoE: III]` |
-| **IV** | Case series / Cross-sectional | `[LoE: IV]` |
-| **V** | Expert opinion / Consensus | `[LoE: V]` |
-
-**Rules:**
-- Each pathology article (Tier 2) must have **at least 3 recommendations with LoE**
-- Each technique article (Tier 3) must have **at least 2 recommendations with LoE**
-- Each foundation article (Tier 1) must have **at least 1 LoE**
-- Include LoE **inline** right after the recommendation, e.g.: `Aspirin 150mg from week 12 for high-risk group [LoE: I — ASPRE trial 2017]`
-
----
-
-## 2. Citation Standard — Mandatory References
-
-### Accepted Sources (in priority order)
-
-| Priority | Source | Citation Example |
-|----------|--------|-----------------|
-| **P0** | National MoH Guidelines | `[MoH 2023 — Diagnosis and Treatment Guidelines]` |
-| **P1** | ACOG Practice Bulletin | `[ACOG PB #234, 2024]` |
-| **P1** | ASRM Committee Opinion | `[ASRM CO 2023]` |
-| **P1** | ESHRE Guideline | `[ESHRE Guideline 2024]` |
-| **P2** | WHO Recommendation | `[WHO 2023]` |
-| **P2** | Cochrane Systematic Review | `[Cochrane 2023]` |
-| **P3** | NICE / RCOG | `[NICE NG000, 2024]` |
-| **P3** | UpToDate / Standard Textbook | `[Williams Obstetrics 26th Ed]` |
-
-### Citation Rules
-
-- Each article **MUST** have a `## REFERENCES` section at the end
-- Each pathology article (T2) must cite **≥ 3 different guidelines**
-- Each technique article (T3) must cite **≥ 2 guidelines**
-- Each foundation article (T1) must cite **≥ 2 guidelines**
-- Cite **inline** within text, e.g.: `According to ACOG PB #234 (2024), IVF success rate in women > 40 is 15-20%`
-- **DO NOT** accept vague citations: ~~"According to research"~~, ~~"Experts suggest"~~
-
----
-
-## 3. Anti-Hallucination Rules — No Fabrication
-
-> 🔴 **CRITICAL:** The most important rules for medical content.
-
-| Rule | Description | Violation Example |
-|------|-------------|-------------------|
-| **No fabricated statistics** | Do not invent percentages or statistical figures | ❌ "Success rate 87.3%" (no source) |
-| **No fabricated drugs** | Only list real medications with correct dosages | ❌ Inventing non-existent brand names |
-| **No fabricated guidelines** | Only cite real, existing guidelines | ❌ "ACOG PB #999" (doesn't exist) |
-| **No fabricated studies** | Do not create fake author names/years | ❌ "According to Smith et al. (2024)..." (fabricated) |
-| **When uncertain → state clearly** | Write "Data varies..." or use ranges | ✅ "Rate ~10-20% (varies by study)" |
-
-### Safe Phrases When Exact Data Is Missing
-
-```
-✅ "Rate ranges from X-Y% depending on the study"
-✅ "Based on available literature, estimated at approximately..."
-✅ "Local data is limited; international reports indicate..."
-✅ "Further research needed to confirm"
-❌ "Exactly XX.X%" (when no specific source exists)
-```
-
----
-
-## 4. Clinical Safety Markers — Medical Markup
-
-Each pathology article (T2) **MUST** include all 4 markers:
-
-| Marker | Purpose | Format |
-|--------|---------|--------|
-| `> 💊 CLINICAL NOTE` | Most important practice consideration | Blockquote |
-| `> ⚠️ RED FLAG` | When urgent intervention / referral is needed | Blockquote |
-| `> 📚 REFERENCE` | Primary guideline for this topic | Blockquote |
-| `> ⚕️ DISCLAIMER` | Specialist consultation required | Blockquote at end |
-
-### Mandatory Disclaimer (end of each article)
-
-```markdown
-> ⚕️ **DISCLAIMER:** This article is for medical reference purposes only.
-> All diagnostic and treatment decisions **require specialist physician guidance**.
-> Do not self-apply protocols without specific clinical evaluation.
-```
-
----
-
-## 5. Cross-Reference Protocol
-
-### Inter-Article Links
-
-- When mentioning a pathology/technique with its own article → **MUST include article code**
-- Format: `→ See details: [VSN-04] Endometriosis`
-- Section `## CROSS-LINKS` must list all related articles
-
-### ICD-10
-
-- Pathology articles (T2) with ICD-10 codes → **MUST include in header**
-- Format: `> **ICD-10:** N97.0 | **Group:** VSN`
-
----
-
-## 6. Medical Writing Audit — 8-Dimension Evaluation
-
-When reviewing medical articles, score across 8 dimensions (1-10):
-
-| Dimension | Question | Passing Standard |
-|-----------|----------|-----------------|
-| **1. Evidence Quality** | Are LoE markers on key recommendations? | ≥ 3 LoE markers |
-| **2. Citation Depth** | Are specific guidelines cited? | ≥ 3 different sources |
-| **3. Clinical Accuracy** | Are drug doses, metrics correct? | No medical errors |
-| **4. Structure** | Correct template, all sections present? | 100% sections with content |
-| **5. ICD-10 Compliance** | Correct ICD-10 code present? | Header has ICD-10 |
-| **6. Safety Markers** | Red Flag, Disclaimer present? | 4/4 markers |
-| **7. Cross-References** | Links to related articles? | ≥ 2 cross-links |
-| **8. Word Count** | Meets minimum length? | T1≥1500, T2≥2000, T3≥1500 |
-
-**Scoring:**
-- **72-80:** Excellent — publish ready
-- **56-71:** Good — minor revisions needed
-- **40-55:** Average — needs more evidence
-- **< 40:** Fail — rewrite
-
----
-
-## 7. Template Enhancement Rules
-
-When creating new articles, inject these additional requirements into the prompt:
-
-### For Pathology Articles (T2)
-
-```
-EVIDENCE-BASED REQUIREMENTS:
-1. Each treatment recommendation includes [LoE: I-V] + source
-2. "DIAGNOSIS" section must have a test table with "Source Guideline" column
-3. "TREATMENT" section must cite specific protocols (ACOG/MoH/ASRM)
-4. End of article has "## REFERENCES" listing ≥ 3 guidelines
-5. End of article has medical DISCLAIMER
-6. DO NOT fabricate statistics — use estimated ranges when exact data is unavailable
-```
-
-### For Technique Articles (T3)
-
-```
-EVIDENCE-BASED REQUIREMENTS:
-1. Each procedure step cites source protocol (ASRM/ESHRE/MoH)
-2. Drug tables must have a "Guideline" column
-3. Success rates must cite source + confidence interval
-4. End of article has "## REFERENCES" ≥ 2 guidelines
-5. End of article has medical DISCLAIMER
-```
-
----
-
-## Verification Script
-
-Run after article generation to check quality:
-
-```bash
-python3 ~/.gemini/antigravity/skills/medical-research/scripts/evidence_checker.py <output_dir>
-```
-
-Script checks: References, LoE markers, ICD-10, Disclaimer, word count, cross-links.
-
----
-
-## Quick Diagnostic
-
-| Question | If NO | Action |
-|----------|-------|--------|
-| Has REFERENCES section? | Article lacks sources | Add ≥ 3 guidelines |
-| Has LoE for recommendations? | Unclear reliability | Assign LoE I-V |
-| Has ICD-10 in header? | Missing coding | Add ICD-10 |
-| Has RED FLAG? | Missing clinical warning | Add ⚠️ marker |
-| Has DISCLAIMER? | Legal risk | Add disclaimer at end |
-| Do statistics have sources? | Suspected hallucination | Convert to estimated ranges |

package/skills/medical-research/scripts/evidence_checker.py

@@ -1,288 +0,0 @@
-#!/usr/bin/env python3
-"""
-Medical Research Evidence Checker
-Validates generated medical articles against evidence-based writing standards.
-
-Usage:
-  python3 evidence_checker.py <output_dir>           # Check all .md files
-  python3 evidence_checker.py <output_dir> --strict   # Fail on warnings too
-  python3 evidence_checker.py <file.md>               # Check single file
-"""
-import argparse
-import re
-import sys
-from dataclasses import dataclass, field
-from pathlib import Path
-
-
-# === Thresholds ===
-MIN_WORDS = {"T1": 1500, "T2": 2000, "T3": 1500}
-MIN_REFERENCES = {"T1": 2, "T2": 3, "T3": 2}
-MIN_LOE_MARKERS = {"T1": 1, "T2": 3, "T3": 2}
-
-GUIDELINE_ORGS = [
-    "ACOG", "ASRM", "ESHRE", "WHO", "BYT", "NICE", "RCOG",
-    "Cochrane", "FIGO", "ISUOG", "RANZCOG", "SOGC",
-]
-
-TIER_MAP = {
-    "F-": "T1",
-    "VSN-": "T2", "VSM-": "T2", "NTI-": "T2", "BT-": "T2",
-    "TC-": "T2", "VT-": "T2", "CTC-": "T2", "AD-": "T2",
-    "VU-": "T2", "TK1-": "T2", "TK2-": "T2", "TK3-": "T2",
-    "TNC-": "T2", "SSL-": "T2", "HSS-": "T2", "VNPK-": "T2",
-    "SMTD-": "T2", "SLTT-": "T2", "UPKSS-": "T2", "PLHP-": "T2",
-    "KTHT-": "T3", "PD-": "T3", "PHO-": "T3", "TDP-": "T3",
-    "DT-": "T3",
-}
-
-
-@dataclass
-class CheckResult:
-    file: str
-    tier: str = "T2"
-    word_count: int = 0
-    has_references: bool = False
-    reference_count: int = 0
-    guideline_refs: list = field(default_factory=list)
-    loe_count: int = 0
-    has_icd10: bool = False
-    has_red_flag: bool = False
-    has_disclaimer: bool = False
-    has_cross_links: bool = False
-    errors: list = field(default_factory=list)
-    warnings: list = field(default_factory=list)
-
-    @property
-    def score(self) -> int:
-        s = 0
-        min_words = MIN_WORDS.get(self.tier, 1500)
-        min_refs = MIN_REFERENCES.get(self.tier, 2)
-        min_loe = MIN_LOE_MARKERS.get(self.tier, 1)
-
-        # Word count (0-10)
-        if self.word_count >= min_words:
-            s += 10
-        elif self.word_count >= min_words * 0.7:
-            s += 6
-        elif self.word_count >= min_words * 0.5:
-            s += 3
-
-        # References (0-10)
-        if self.reference_count >= min_refs:
-            s += 10
-        elif self.reference_count >= 1:
-            s += 5
-
-        # Guideline orgs (0-10)
-        if len(self.guideline_refs) >= min_refs:
-            s += 10
-        elif len(self.guideline_refs) >= 1:
-            s += 5
-
-        # LoE markers (0-10)
-        if self.loe_count >= min_loe:
-            s += 10
-        elif self.loe_count >= 1:
-            s += 5
-
-        # ICD-10 (0-10) — only for T2
-        if self.tier == "T2":
-            s += 10 if self.has_icd10 else 0
-        else:
-            s += 10  # N/A for T1/T3
-
-        # Red flag (0-10) — only for T2
-        if self.tier == "T2":
-            s += 10 if self.has_red_flag else 0
-        else:
-            s += 10
-
-        # Disclaimer (0-10)
-        s += 10 if self.has_disclaimer else 0
-
-        # Cross-links (0-10)
-        s += 10 if self.has_cross_links else 0
-
-        return s
-
-    @property
-    def grade(self) -> str:
-        s = self.score
-        if s >= 72:
-            return "✅ XUẤT SẮC"
-        if s >= 56:
-            return "🟡 TỐT"
-        if s >= 40:
-            return "🟠 TRUNG BÌNH"
-        return "❌ FAIL"
-
-
-def detect_tier(filename: str) -> str:
-    for prefix, tier in TIER_MAP.items():
-        if filename.startswith(prefix):
-            return tier
-    return "T2"
-
-
-def check_file(filepath: Path) -> CheckResult:
-    content = filepath.read_text(encoding="utf-8")
-    filename = filepath.stem
-    result = CheckResult(file=str(filepath), tier=detect_tier(filename))
-
-    # Word count
-    result.word_count = len(content.split())
-    min_words = MIN_WORDS.get(result.tier, 1500)
-    if result.word_count < min_words:
-        result.errors.append(f"Word count {result.word_count} < {min_words} minimum")
-
-    # References section
-    ref_patterns = [
-        r"##\s*\d*\.?\s*TÀI LIỆU THAM KHẢO",
-        r"##\s*\d*\.?\s*REFERENCES",
-        r"##\s*\d*\.?\s*THAM KHẢO",
-    ]
-    result.has_references = any(re.search(p, content, re.IGNORECASE) for p in ref_patterns)
-    if not result.has_references:
-        result.errors.append("Missing '## TÀI LIỆU THAM KHẢO' section")
-
-    # Count reference lines (lines starting with - or * or number in ref section)
-    ref_section = ""
-    for p in ref_patterns:
-        match = re.search(p, content, re.IGNORECASE)
-        if match:
-            ref_section = content[match.start():]
-            # Find next ## to limit scope
-            next_section = re.search(r"\n##\s", ref_section[5:])
-            if next_section:
-                ref_section = ref_section[:next_section.start() + 5]
-            break
-    ref_lines = re.findall(r"^\s*[-*\d]+\.?\s+.+", ref_section, re.MULTILINE)
-    result.reference_count = len(ref_lines)
-
-    # Guideline references (anywhere in text)
-    found_orgs = set()
-    for org in GUIDELINE_ORGS:
-        if re.search(rf"\b{org}\b", content, re.IGNORECASE):
-            found_orgs.add(org)
-    result.guideline_refs = sorted(found_orgs)
-
-    min_refs = MIN_REFERENCES.get(result.tier, 2)
-    if len(found_orgs) < min_refs:
-        result.warnings.append(
-            f"Only {len(found_orgs)} guideline org(s) cited, need ≥ {min_refs}"
-        )
-
-    # Level of Evidence markers
-    loe_matches = re.findall(r"\[LoE:\s*[IViv]+", content)
-    result.loe_count = len(loe_matches)
-    min_loe = MIN_LOE_MARKERS.get(result.tier, 1)
-    if result.loe_count < min_loe:
-        result.warnings.append(f"Only {result.loe_count} LoE marker(s), need ≥ {min_loe}")
-
-    # ICD-10 (for T2)
-    icd_pattern = r"ICD-10\s*:\s*[A-Z]\d"
-    result.has_icd10 = bool(re.search(icd_pattern, content))
-    if result.tier == "T2" and not result.has_icd10:
-        result.warnings.append("No ICD-10 code found (expected for pathology article)")
-
-    # Red flag marker
-    red_flag_patterns = [r"CỜ ĐỎ", r"⚠️.*CỜ ĐỎ", r"RED FLAG"]
-    result.has_red_flag = any(re.search(p, content) for p in red_flag_patterns)
-    if result.tier == "T2" and not result.has_red_flag:
-        result.warnings.append("Missing '⚠️ CỜ ĐỎ' section")
-
-    # Disclaimer
-    disclaimer_patterns = [
-        r"DISCLAIMER",
-        r"cần chỉ định của bác sĩ",
-        r"bác sĩ chuyên khoa",
-        r"⚕️",
-    ]
-    result.has_disclaimer = any(re.search(p, content, re.IGNORECASE) for p in disclaimer_patterns)
-    if not result.has_disclaimer:
-        result.errors.append("Missing medical disclaimer")
-
-    # Cross-links
-    cross_patterns = [r"CROSS.?LINK", r"Xem chi tiết", r"→\s*Xem", r"Xem thêm"]
-    result.has_cross_links = any(re.search(p, content, re.IGNORECASE) for p in cross_patterns)
-    if not result.has_cross_links:
-        result.warnings.append("No cross-links to related articles")
-
-    return result
-
-
-def main():
-    parser = argparse.ArgumentParser(description="🏥 Medical Research Evidence Checker")
-    parser.add_argument("path", help="File or directory to check")
-    parser.add_argument("--strict", action="store_true", help="Treat warnings as errors")
-    args = parser.parse_args()
-
-    target = Path(args.path)
-    if target.is_file():
-        files = [target]
-    elif target.is_dir():
-        files = sorted(target.rglob("*.md"))
-    else:
-        print(f"❌ Path not found: {target}")
-        sys.exit(1)
-
-    if not files:
-        print(f"⚠️ No .md files found in {target}")
-        sys.exit(0)
-
-    results = [check_file(f) for f in files]
-
-    # === Summary Table ===
-    print("\n" + "=" * 80)
-    print("🏥 MEDICAL RESEARCH EVIDENCE CHECK")
-    print("=" * 80)
-    print(f"\n📁 Checked: {len(results)} file(s)\n")
-
-    print(f"{'File':<30} {'Tier':<5} {'Words':<7} {'Refs':<5} {'LoE':<5} {'Score':<7} {'Grade'}")
-    print("-" * 80)
-
-    total_errors = 0
-    total_warnings = 0
-
-    for r in results:
-        fname = Path(r.file).stem[:28]
-        print(f"{fname:<30} {r.tier:<5} {r.word_count:<7} {r.reference_count:<5} {r.loe_count:<5} {r.score}/80  {r.grade}")
-        total_errors += len(r.errors)
-        total_warnings += len(r.warnings)
-
-    # === Detail Errors ===
-    print(f"\n{'=' * 80}")
-    print(f"📊 Total: {total_errors} error(s), {total_warnings} warning(s)")
-    print(f"{'=' * 80}")
-
-    if total_errors > 0 or total_warnings > 0:
-        for r in results:
-            if r.errors or r.warnings:
-                print(f"\n📄 {Path(r.file).stem}")
-                for e in r.errors:
-                    print(f"  ❌ {e}")
-                for w in r.warnings:
-                    print(f"  ⚠️  {w}")
-
-    # === Score Summary ===
-    if results:
-        avg_score = sum(r.score for r in results) / len(results)
-        print(f"\n📈 Average Score: {avg_score:.1f}/80")
-
-        excellent = sum(1 for r in results if r.score >= 72)
-        good = sum(1 for r in results if 56 <= r.score < 72)
-        avg = sum(1 for r in results if 40 <= r.score < 56)
-        fail = sum(1 for r in results if r.score < 40)
-        print(f"   ✅ Xuất sắc: {excellent} | 🟡 Tốt: {good} | 🟠 TB: {avg} | ❌ Fail: {fail}")
-
-    # Exit code
-    if args.strict and (total_errors > 0 or total_warnings > 0):
-        sys.exit(1)
-    elif total_errors > 0:
-        sys.exit(1)
-    sys.exit(0)
-
-
-if __name__ == "__main__":
-    main()