codifier 2.1.0

package/dist/cli/bin/codifier.d.ts

@@ -0,0 +1,7 @@
+#!/usr/bin/env node
+/**
+ * Codifier CLI entry point
+ * Usage: npx codifier <command>
+ */
+export {};
+//# sourceMappingURL=codifier.d.ts.map

package/dist/cli/bin/codifier.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/bin/codifier.js

@@ -0,0 +1,47 @@
+#!/usr/bin/env node
+/**
+ * Codifier CLI entry point
+ * Usage: npx codifier <command>
+ */
+import { program } from 'commander';
+import { runInit } from '../init.js';
+import { runUpdate } from '../update.js';
+import { runAdd } from '../add.js';
+import { runDoctor } from '../doctor.js';
+program
+    .name('codifier')
+    .description('Codifier MCP — install and manage AI skills for your project')
+    .version('2.0.0');
+program
+    .command('init')
+    .description('Scaffold Codifier skills, slash commands, and MCP config into this project')
+    .option('--client <type>', 'Override client detection (claude-code, cowork, cursor, windsurf)')
+    .option('--url <serverUrl>', 'MCP server URL (skips interactive prompt)')
+    .option('--key <apiKey>', 'Codifier API key (skips interactive prompt)')
+    .action(async (opts) => {
+    await runInit(opts.client, opts.url, opts.key);
+});
+program
+    .command('update')
+    .description('Pull the latest skills from the npm package into .codifier/skills/')
+    .action(async () => {
+    await runUpdate();
+});
+program
+    .command('add <skill>')
+    .description('Install a single skill by name (e.g., research-analyze)')
+    .action(async (skill) => {
+    await runAdd(skill);
+});
+program
+    .command('doctor')
+    .description('Verify MCP connectivity and check installed skill files')
+    .option('--client <type>', 'Override client detection (claude-code, cowork, cursor, windsurf)')
+    .action(async (opts) => {
+    await runDoctor(opts.client);
+});
+program.parseAsync(process.argv).catch((err) => {
+    console.error('Error:', err.message);
+    process.exit(1);
+});
+//# sourceMappingURL=codifier.js.map

package/dist/cli/bin/codifier.js.map

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package/dist/cli/detect.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Environment detection — identifies which LLM client is in use
+ * by checking for client-specific directories.
+ * Accepts an optional override for cases where auto-detection fails
+ * (e.g., Cowork has no pre-existing directory before init).
+ */
+export type ClientType = 'claude-code' | 'cowork' | 'cursor' | 'windsurf' | 'generic';
+export interface DetectedEnvironment {
+    clientType: ClientType;
+    commandsDir: string;
+    skillsDir: string;
+    mcpConfigPath: string;
+}
+export declare function detectEnvironment(cwd?: string, clientOverride?: ClientType): DetectedEnvironment;
+//# sourceMappingURL=detect.d.ts.map

package/dist/cli/detect.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/detect.js

@@ -0,0 +1,69 @@
+/**
+ * Environment detection — identifies which LLM client is in use
+ * by checking for client-specific directories.
+ * Accepts an optional override for cases where auto-detection fails
+ * (e.g., Cowork has no pre-existing directory before init).
+ */
+import { existsSync } from 'fs';
+import { join } from 'path';
+export function detectEnvironment(cwd = process.cwd(), clientOverride) {
+    if (clientOverride) {
+        return buildEnvironment(cwd, clientOverride);
+    }
+    // Cowork: .claude-plugin/ exists (re-init or manually created)
+    if (existsSync(join(cwd, '.claude-plugin'))) {
+        return buildEnvironment(cwd, 'cowork');
+    }
+    if (existsSync(join(cwd, '.claude'))) {
+        return buildEnvironment(cwd, 'claude-code');
+    }
+    if (existsSync(join(cwd, '.cursor'))) {
+        return buildEnvironment(cwd, 'cursor');
+    }
+    if (existsSync(join(cwd, '.windsurf'))) {
+        return buildEnvironment(cwd, 'windsurf');
+    }
+    return buildEnvironment(cwd, 'generic');
+}
+function buildEnvironment(cwd, clientType) {
+    switch (clientType) {
+        case 'cowork':
+            // Cowork plugin spec: commands/ and skills/ at project root,
+            // only plugin.json inside .claude-plugin/
+            return {
+                clientType,
+                commandsDir: join(cwd, 'commands'),
+                skillsDir: join(cwd, 'skills'),
+                mcpConfigPath: join(cwd, '.mcp.json'),
+            };
+        case 'claude-code':
+            return {
+                clientType,
+                commandsDir: join(cwd, '.claude', 'commands'),
+                skillsDir: join(cwd, '.codifier', 'skills'),
+                mcpConfigPath: join(cwd, '.mcp.json'),
+            };
+        case 'cursor':
+            return {
+                clientType,
+                commandsDir: join(cwd, '.cursor', 'rules'),
+                skillsDir: join(cwd, '.codifier', 'skills'),
+                mcpConfigPath: join(cwd, '.cursor', 'mcp.json'),
+            };
+        case 'windsurf':
+            return {
+                clientType,
+                commandsDir: join(cwd, '.windsurf', 'commands'),
+                skillsDir: join(cwd, '.codifier', 'skills'),
+                mcpConfigPath: join(cwd, '.windsurf', 'mcp.json'),
+            };
+        default:
+            return {
+                clientType,
+                commandsDir: join(cwd, '.codifier', 'commands'),
+                skillsDir: join(cwd, '.codifier', 'skills'),
+                mcpConfigPath: join(cwd, '.codifier', 'mcp.json'),
+            };
+    }
+}
+//# sourceMappingURL=detect.js.map

package/dist/cli/detect.js.map

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package/dist/cli/doctor.d.ts

@@ -0,0 +1,6 @@
+/**
+ * `codifier doctor` — verify installation health.
+ */
+import { type ClientType } from './detect.js';
+export declare function runDoctor(clientOverride?: ClientType): Promise<void>;
+//# sourceMappingURL=doctor.d.ts.map

package/dist/cli/doctor.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/doctor.js

@@ -0,0 +1,71 @@
+/**
+ * `codifier doctor` — verify installation health.
+ */
+import { existsSync, readFileSync } from 'fs';
+import { join } from 'path';
+import { detectEnvironment } from './detect.js';
+const REQUIRED_SKILLS = [
+    'initialize-project/SKILL.md',
+    'brownfield-onboard/SKILL.md',
+    'research-analyze/SKILL.md',
+];
+export async function runDoctor(clientOverride) {
+    const cwd = process.cwd();
+    const env = detectEnvironment(cwd, clientOverride);
+    const configPath = join(cwd, '.codifier', 'config.json');
+    let allGood = true;
+    console.log(`\nCodifier Doctor (client: ${env.clientType})\n`);
+    // Check config
+    if (!existsSync(configPath)) {
+        console.error('✗ .codifier/config.json not found — run `codifier init` first');
+        allGood = false;
+    }
+    else {
+        console.log('✓ .codifier/config.json found');
+    }
+    // Check skill files in the client-appropriate location
+    for (const skillFile of REQUIRED_SKILLS) {
+        const fullPath = join(env.skillsDir, skillFile);
+        if (!existsSync(fullPath) || readFileSync(fullPath, 'utf8').trim().length === 0) {
+            console.error(`✗ Missing or empty: ${skillFile} in ${env.skillsDir}`);
+            allGood = false;
+        }
+        else {
+            console.log(`✓ ${skillFile}`);
+        }
+    }
+    // Check Cowork-specific files
+    if (env.clientType === 'cowork') {
+        const manifestPath = join(cwd, '.claude-plugin', 'plugin.json');
+        if (!existsSync(manifestPath)) {
+            console.error('✗ .claude-plugin/plugin.json not found — run `codifier init --client cowork` to regenerate');
+            allGood = false;
+        }
+        else {
+            console.log('✓ .claude-plugin/plugin.json found');
+        }
+    }
+    // Check MCP connectivity
+    if (existsSync(configPath)) {
+        try {
+            const config = JSON.parse(readFileSync(configPath, 'utf8'));
+            console.log('\nChecking MCP connectivity...');
+            const response = await fetch(`${config.serverUrl}/health`);
+            if (response.ok) {
+                console.log('✓ MCP server reachable');
+            }
+            else {
+                console.warn(`⚠ Health check returned ${response.status}`);
+                allGood = false;
+            }
+        }
+        catch {
+            console.warn('⚠ Could not reach MCP server');
+            allGood = false;
+        }
+    }
+    console.log(allGood ? '\n✅ All checks passed\n' : '\n⚠ Some checks failed — see above\n');
+    if (!allGood)
+        process.exit(1);
+}
+//# sourceMappingURL=doctor.js.map

package/dist/cli/doctor.js.map

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package/dist/cli/init.d.ts

@@ -0,0 +1,7 @@
+/**
+ * `codifier init` — one-time scaffolder.
+ * Copies skills, slash commands, and writes MCP config.
+ */
+import { type ClientType } from './detect.js';
+export declare function runInit(clientOverride?: ClientType, urlFlag?: string, keyFlag?: string): Promise<void>;
+//# sourceMappingURL=init.d.ts.map

package/dist/cli/init.d.ts.map

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package/dist/cli/init.js

@@ -0,0 +1,144 @@
+/**
+ * `codifier init` — one-time scaffolder.
+ * Copies skills, slash commands, and writes MCP config.
+ */
+import { mkdirSync, cpSync, writeFileSync, existsSync, readFileSync } from 'fs';
+import { join, dirname } from 'path';
+import { fileURLToPath } from 'url';
+import * as readline from 'readline';
+import { detectEnvironment } from './detect.js';
+const __dirname = dirname(fileURLToPath(import.meta.url));
+// In the published npm package, skills/ is at the package root (sibling of dist/)
+// When running from dist/cli/, the package root is two levels up
+const PACKAGE_ROOT = join(__dirname, '..', '..');
+const SKILLS_SOURCE = join(PACKAGE_ROOT, 'skills');
+const COMMANDS_SOURCE = join(PACKAGE_ROOT, 'commands');
+function prompt(question) {
+    const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+    return new Promise((resolve) => {
+        rl.question(question, (answer) => {
+            rl.close();
+            resolve(answer.trim());
+        });
+    });
+}
+export async function runInit(clientOverride, urlFlag, keyFlag) {
+    const cwd = process.cwd();
+    const env = detectEnvironment(cwd, clientOverride);
+    console.log(`\nCodifier Init — detected client: ${env.clientType}\n`);
+    // 1. Copy skills to the client-appropriate location
+    mkdirSync(env.skillsDir, { recursive: true });
+    if (existsSync(SKILLS_SOURCE)) {
+        cpSync(SKILLS_SOURCE, env.skillsDir, { recursive: true });
+        console.log(`✓ Skills copied to ${env.skillsDir}`);
+    }
+    else {
+        console.warn(`⚠ Skills source not found at ${SKILLS_SOURCE} — skipping`);
+    }
+    // 2. Copy slash commands to client-specific location
+    mkdirSync(env.commandsDir, { recursive: true });
+    if (existsSync(COMMANDS_SOURCE)) {
+        cpSync(COMMANDS_SOURCE, env.commandsDir, { recursive: true });
+        console.log(`✓ Commands copied to ${env.commandsDir}`);
+    }
+    else {
+        console.warn(`⚠ Commands source not found at ${COMMANDS_SOURCE} — skipping`);
+    }
+    // 2b. Cowork: write plugin.json manifest
+    if (env.clientType === 'cowork') {
+        const pluginDir = join(cwd, '.claude-plugin');
+        mkdirSync(pluginDir, { recursive: true });
+        const version = getPackageVersion();
+        const manifest = {
+            name: 'codifier',
+            description: 'Institutional memory for AI-driven development',
+            version,
+        };
+        writeFileSync(join(pluginDir, 'plugin.json'), JSON.stringify(manifest, null, 2));
+        console.log('✓ Cowork plugin manifest written to .claude-plugin/plugin.json');
+    }
+    // 3. Resolve server URL and API key: flags → env vars → interactive prompt → default/error
+    const DEFAULT_SERVER_URL = 'https://codifier-mcp.fly.dev';
+    const serverUrl = urlFlag
+        || process.env.CODIFIER_SERVER_URL
+        || (process.stdin.isTTY ? await prompt(`Codifier MCP server URL [${DEFAULT_SERVER_URL}]: `) : '')
+        || DEFAULT_SERVER_URL;
+    const apiKey = keyFlag
+        || process.env.CODIFIER_API_KEY
+        || (process.stdin.isTTY ? await prompt('Codifier API key: ') : '');
+    if (!apiKey) {
+        console.error('Error: No API key provided. Use --key <key> or set CODIFIER_API_KEY.');
+        process.exit(1);
+    }
+    // 4. Write .codifier/config.json
+    const configDir = join(cwd, '.codifier');
+    mkdirSync(configDir, { recursive: true });
+    const config = { serverUrl, apiKey, installedAt: new Date().toISOString() };
+    writeFileSync(join(configDir, 'config.json'), JSON.stringify(config, null, 2));
+    console.log('✓ Config saved to .codifier/config.json');
+    // 4b. Create docs/ directory for local artifact copies
+    const docsDir = join(cwd, 'docs');
+    mkdirSync(docsDir, { recursive: true });
+    console.log('✓ Created docs/ for local artifact storage');
+    // 4c. Create docs/MEMORY.md placeholder if it doesn't exist
+    const memoryFile = join(docsDir, 'MEMORY.md');
+    if (!existsSync(memoryFile)) {
+        const memoryPlaceholder = `# Project Memory
+_Last updated: ${new Date().toISOString().split('T')[0]}_
+
+`;
+        writeFileSync(memoryFile, memoryPlaceholder);
+        console.log('✓ Created docs/MEMORY.md for session memory capture');
+    }
+    // 5. Write MCP config (client-specific format)
+    const mcpConfig = buildMcpConfig(serverUrl, apiKey);
+    writeFileSync(env.mcpConfigPath, JSON.stringify(mcpConfig, null, 2));
+    console.log(`✓ MCP config written to ${env.mcpConfigPath}`);
+    // 6. Verify connectivity (best-effort)
+    console.log('\nVerifying MCP connectivity...');
+    try {
+        const response = await fetch(`${serverUrl}/health`);
+        if (response.ok) {
+            console.log('✓ MCP server reachable');
+        }
+        else {
+            console.warn(`⚠ Health check returned ${response.status} — check your server URL`);
+        }
+    }
+    catch {
+        console.warn('⚠ Could not reach MCP server — check the URL and ensure the server is running');
+    }
+    // 7. Print summary
+    console.log('\n✅ Codifier installed successfully!\n');
+    console.log('Available skills:');
+    console.log('  • Initialize Project  →  /codify');
+    console.log('  • Brownfield Onboard  →  /onboard');
+    console.log('  • Research & Analyze  →  /research');
+    console.log('\nMemory capture:');
+    console.log('  • Capture learnings   →  /remember');
+    console.log('  • Push to shared KB   →  /push-memory');
+    console.log('  • Recall learnings    →  /recall');
+    console.log('\n  Artifacts and memories saved locally to docs/');
+    console.log('\nRun /codify in your LLM client to start your first project.\n');
+}
+function buildMcpConfig(serverUrl, apiKey) {
+    return {
+        mcpServers: {
+            codifier: {
+                url: `${serverUrl}/sse`,
+                headers: { Authorization: `Bearer ${apiKey}` },
+            },
+        },
+    };
+}
+function getPackageVersion() {
+    try {
+        const pkgPath = join(PACKAGE_ROOT, 'package.json');
+        const pkg = JSON.parse(readFileSync(pkgPath, 'utf8'));
+        return pkg.version;
+    }
+    catch {
+        return '2.0.0';
+    }
+}
+//# sourceMappingURL=init.js.map

package/dist/cli/init.js.map

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package/dist/cli/update.d.ts

@@ -0,0 +1,5 @@
+/**
+ * `codifier update` — pull latest skills from the npm package.
+ */
+export declare function runUpdate(): Promise<void>;
+//# sourceMappingURL=update.d.ts.map

package/dist/cli/update.d.ts.map

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package/dist/cli/update.js

@@ -0,0 +1,38 @@
+/**
+ * `codifier update` — pull latest skills from the npm package.
+ */
+import { cpSync, existsSync, mkdirSync, writeFileSync } from 'fs';
+import { join, dirname } from 'path';
+import { fileURLToPath } from 'url';
+import { detectEnvironment } from './detect.js';
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const PACKAGE_ROOT = join(__dirname, '..', '..');
+const SKILLS_SOURCE = join(PACKAGE_ROOT, 'skills');
+export async function runUpdate() {
+    const cwd = process.cwd();
+    const env = detectEnvironment(cwd);
+    if (!existsSync(env.skillsDir)) {
+        console.error(`Error: ${env.skillsDir} not found. Run \`codifier init\` first.`);
+        process.exit(1);
+    }
+    if (!existsSync(SKILLS_SOURCE)) {
+        console.error(`Error: Skills source not found at ${SKILLS_SOURCE}`);
+        process.exit(1);
+    }
+    cpSync(SKILLS_SOURCE, env.skillsDir, { recursive: true });
+    console.log(`✓ Skills updated in ${env.skillsDir}`);
+    console.log('Note: .codifier/config.json was preserved.');
+    // Backfill docs/MEMORY.md for users upgrading from a previous install
+    const docsDir = join(cwd, 'docs');
+    mkdirSync(docsDir, { recursive: true });
+    const memoryFile = join(docsDir, 'MEMORY.md');
+    if (!existsSync(memoryFile)) {
+        const memoryPlaceholder = `# Project Memory
+_Last updated: ${new Date().toISOString().split('T')[0]}_
+
+`;
+        writeFileSync(memoryFile, memoryPlaceholder);
+        console.log('✓ Created docs/MEMORY.md for session memory capture');
+    }
+}
+//# sourceMappingURL=update.js.map

package/dist/cli/update.js.map

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package/dist/index.js

@@ -0,0 +1,87 @@
+/**
+ * CodifierMcp - MCP Server Entry Point
+ *
+ * Institutional memory system for AI-driven development.
+ * Provides fetch_context and update_memory tools via MCP protocol.
+ */
+import { getConfig } from './config/env.js';
+import { logger } from './utils/logger.js';
+import { createDataStore } from './datastore/factory.js';
+import { initializeMcpServer, connectStdioTransport } from './mcp/server.js';
+import { startHttpServer } from './http/server.js';
+/**
+ * Main entry point
+ */
+async function main() {
+    try {
+        logger.info('Starting CodifierMcp server');
+        // Load and validate configuration
+        const config = getConfig();
+        logger.info('Configuration loaded', {
+            dataStore: config.DATA_STORE,
+            transportMode: config.TRANSPORT_MODE,
+            httpPort: config.TRANSPORT_MODE === 'http' ? config.HTTP_PORT : undefined,
+            logLevel: config.LOG_LEVEL,
+        });
+        // Create data store instance via factory
+        const dataStore = createDataStore(config);
+        logger.debug('Data store instance created', { backend: config.DATA_STORE });
+        // Initialize MCP server (transport-agnostic)
+        const server = await initializeMcpServer({
+            name: 'codifier-mcp',
+            version: '0.1.0',
+            dataStore,
+        });
+        // Connect appropriate transport based on configuration
+        if (config.TRANSPORT_MODE === 'stdio') {
+            logger.info('Starting server in stdio mode');
+            await connectStdioTransport(server);
+            logger.info('CodifierMcp server is ready (stdio transport)');
+        }
+        else if (config.TRANSPORT_MODE === 'http') {
+            logger.info('Starting server in HTTP mode');
+            await startHttpServer(server, {
+                port: config.HTTP_PORT,
+                apiAuthToken: config.API_AUTH_TOKEN,
+                dataStore,
+            });
+            logger.info('CodifierMcp server is ready (HTTP transport)');
+        }
+        logger.info('Tools available: fetch_context, update_memory');
+        // Handle graceful shutdown
+        process.on('SIGINT', async () => {
+            logger.info('Received SIGINT, shutting down gracefully');
+            try {
+                await server.close();
+                logger.info('Server closed successfully');
+                process.exit(0);
+            }
+            catch (error) {
+                logger.error('Error during shutdown', error);
+                process.exit(1);
+            }
+        });
+        process.on('SIGTERM', async () => {
+            logger.info('Received SIGTERM, shutting down gracefully');
+            try {
+                await server.close();
+                logger.info('Server closed successfully');
+                process.exit(0);
+            }
+            catch (error) {
+                logger.error('Error during shutdown', error);
+                process.exit(1);
+            }
+        });
+    }
+    catch (error) {
+        logger.error('Fatal error during startup', {
+            error: error instanceof Error ? error.message : 'Unknown error',
+            stack: error instanceof Error ? error.stack : undefined,
+        });
+        process.exit(1);
+    }
+}
+// Start the server
+main();
+//# sourceMappingURL=index.js.map

package/package.json

@@ -0,0 +1,40 @@
+{
+  "name": "codifier",
+  "version": "2.1.0",
+  "description": "MCP server for institutional memory management",
+  "main": "dist/index.js",
+  "bin": {
+    "codifier": "dist/cli/bin/codifier.js"
+  },
+  "type": "module",
+  "files": [
+    "dist/cli/",
+    "skills/",
+    "commands/"
+  ],
+  "scripts": {
+    "build": "tsc",
+    "dev": "tsc && node dist/index.js",
+    "watch": "tsc --watch",
+    "start": "node dist/index.js",
+    "test": "node --test tests/http-server.test.js",
+    "prepublishOnly": "npm run build"
+  },
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.21.1",
+    "@supabase/supabase-js": "^2.95.3",
+    "commander": "^14.0.3",
+    "cors": "^2.8.5",
+    "express": "^5.0.0",
+    "js-yaml": "^4.1.0",
+    "repomix": "^0.3.0",
+    "zod": "^3.23.8"
+  },
+  "devDependencies": {
+    "@types/cors": "^2.8.17",
+    "@types/express": "^5.0.0",
+    "@types/js-yaml": "^4.0.9",
+    "@types/node": "^20.12.7",
+    "typescript": "^5.5.3"
+  }
+}