codetree-claude 1.5.0 → 1.5.2

package/dist/setup/install.js

@@ -1,8 +1,43 @@
 import { existsSync, readFileSync, writeFileSync, mkdirSync } from "node:fs";
 import { join, dirname } from "node:path";
 import { fileURLToPath } from "node:url";
+import TOML from "@iarna/toml";
+import { readRequiredTemplate } from "./template-load.js";
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = dirname(__filename);
+/** Idempotent replace for CLAUDE.md / AGENTS.md / GEMINI.md blocks shipped in `templates/`. */
+const CLAUDE_MD_BLOCK_RE = /<!-- codetree-instructions -->[\s\S]*?<!-- \/codetree-instructions -->/;
+const AGENTS_BLOCK_RE = /<!-- codetree-agents -->[\s\S]*?<!-- \/codetree-agents -->/;
+const GEMINI_BLOCK_RE = /<!-- codetree-gemini -->[\s\S]*?<!-- \/codetree-gemini -->/;
+/** Shared MCP server entry for stdio (Claude `.mcp.json`, Cursor, Antigravity, etc.). */
+export function buildCodetreeMcpServerEntry(projectRoot, serverScriptPath) {
+    const normalizedPath = serverScriptPath.replace(/\\/g, "/");
+    const normalizedRoot = projectRoot.replace(/\\/g, "/");
+    return {
+        command: "node",
+        args: [normalizedPath],
+        cwd: normalizedRoot,
+        env: {
+            CODETREE_PROJECT_ROOT: normalizedRoot,
+        },
+    };
+}
+function mergeJsonMcpFile(mcpConfigPath, projectRoot, serverScriptPath) {
+    let config = {};
+    if (existsSync(mcpConfigPath)) {
+        try {
+            config = JSON.parse(readFileSync(mcpConfigPath, "utf-8"));
+        }
+        catch {
+            // Invalid JSON, start fresh
+        }
+    }
+    if (!config.mcpServers)
+        config.mcpServers = {};
+    config.mcpServers.codetree = buildCodetreeMcpServerEntry(projectRoot, serverScriptPath);
+    mkdirSync(dirname(mcpConfigPath), { recursive: true });
+    writeFileSync(mcpConfigPath, JSON.stringify(config, null, 2), "utf-8");
+}
 function addHookIfMissing(hooks, matcher, command) {
     const exists = hooks.find((h) => h.hooks?.some((hook) => hook.command?.includes("codetree")));
     if (!exists) {
@@ -85,17 +120,7 @@ export function installMcpServer(projectRoot, serverScriptPath) {
     if (!config.mcpServers)
         config.mcpServers = {};
     // Always update — don't skip, paths may have changed
-    // Normalize all paths to forward slashes for cross-platform compatibility
-    const normalizedPath = serverScriptPath.replace(/\\/g, "/");
-    const normalizedRoot = projectRoot.replace(/\\/g, "/");
-    config.mcpServers.codetree = {
-        command: "node",
-        args: [normalizedPath],
-        cwd: normalizedRoot,
-        env: {
-            CODETREE_PROJECT_ROOT: normalizedRoot,
-        },
-    };
+    config.mcpServers.codetree = buildCodetreeMcpServerEntry(projectRoot, serverScriptPath);
     writeFileSync(mcpConfigPath, JSON.stringify(config, null, 2), "utf-8");
     return { success: true, message: `MCP server registered in ${mcpConfigPath}` };
 }
@@ -132,53 +157,23 @@ export function createDefaultConfig(projectRoot) {
 }
 /**
  * Generate CLAUDE.md that instructs Claude to use CodeTree MCP tools.
- * Appends to existing CLAUDE.md if present, creates new one if not.
+ * Text is loaded from packaged `templates/claude-md-codetree.snippet.md`.
  */
 export function installClaudeMd(projectRoot) {
     const claudeMdPath = join(projectRoot, "CLAUDE.md");
-    const marker = "<!-- codetree-instructions -->";
-    const codetreeBlock = `
-${marker}
-## CodeTree — Cached Codebase Access
-
-This project has CodeTree MCP tools for faster, token-efficient codebase access.
-**Use these instead of native Read/Grep/Glob whenever possible:**
-
-| Instead of | Use | Why |
-|-----------|-----|-----|
-| \`Read\` | \`codetree_read\` | Cached content + symbol metadata |
-| \`Grep\` | \`codetree_search\` | Instant symbol index search. Set \`content_search=true\` for line matches |
-| \`Glob\` | \`codetree_structure\` | Indexed project tree with language stats |
-
-**Other tools:**
-- \`codetree_find_refs\` — Find all references to a symbol
-- \`codetree_summary\` — Project overview (call at session start)
-- \`codetree_memory\` — Save/recall insights across sessions
-
-**Session workflow:**
-1. Start: call \`codetree_summary\` and \`codetree_memory\` with \`action: "get_context"\`
-2. During work: use \`codetree_read\`/\`codetree_search\` instead of native tools
-3. Save discoveries: \`codetree_memory\` with \`action: "save_insight"\`
-<!-- /codetree-instructions -->`;
+    const codetreeBlock = readRequiredTemplate("claude-md-codetree.snippet.md").trim();
     if (existsSync(claudeMdPath)) {
         let content = readFileSync(claudeMdPath, "utf-8");
-        if (content.includes(marker)) {
-            // Already has codetree block — update it
-            const startIdx = content.indexOf(marker);
-            const endMarker = "<!-- /codetree-instructions -->";
-            const endIdx = content.indexOf(endMarker);
-            if (endIdx > startIdx) {
-                content = content.slice(0, startIdx) + codetreeBlock.trim() + "\n" + content.slice(endIdx + endMarker.length);
-            }
+        if (CLAUDE_MD_BLOCK_RE.test(content)) {
+            content = content.replace(CLAUDE_MD_BLOCK_RE, codetreeBlock);
         }
         else {
-            // Append to existing CLAUDE.md
-            content = content.trimEnd() + "\n\n" + codetreeBlock.trim() + "\n";
+            content = content.trimEnd() + "\n\n" + codetreeBlock + "\n";
         }
         writeFileSync(claudeMdPath, content, "utf-8");
     }
     else {
-        writeFileSync(claudeMdPath, codetreeBlock.trim() + "\n", "utf-8");
+        writeFileSync(claudeMdPath, codetreeBlock + "\n", "utf-8");
     }
 }
 /**
@@ -191,19 +186,129 @@ export function installClaudeRules(projectRoot) {
         mkdirSync(rulesDir, { recursive: true });
     }
     const rulePath = join(rulesDir, "codetree.md");
-    const ruleContent = `MANDATORY: Use CodeTree MCP tools instead of native Read/Grep/Glob.
-
-- Use \`codetree_read\` instead of \`Read\` for all file reads
-- Use \`codetree_search\` instead of \`Grep\` for all code searches
-- Use \`codetree_structure\` instead of \`Glob\` for all file listings
-- Use \`codetree_summary\` at session start for project overview
-- Use \`codetree_memory\` with action "get_context" to recall prior sessions
-- Use \`codetree_memory\` with action "save_insight" to persist discoveries
-
-These tools serve cached data and save tokens. ALWAYS prefer them.
-`;
+    const ruleContent = readRequiredTemplate("claude-rules-codetree.md").trimEnd() + "\n";
+    writeFileSync(rulePath, ruleContent, "utf-8");
+}
+// ─── Cursor (MCP + rules) — does not modify Claude paths ─────────────────
+/**
+ * Register CodeTree in `.cursor/mcp.json` (Cursor IDE).
+ */
+export function installCursorMcp(projectRoot, serverScriptPath) {
+    const mcpConfigPath = join(projectRoot, ".cursor", "mcp.json");
+    mergeJsonMcpFile(mcpConfigPath, projectRoot, serverScriptPath);
+    return { success: true, message: `Cursor MCP registered in ${mcpConfigPath}` };
+}
+/**
+ * Cursor rules so the agent prefers CodeTree tools (steering; not hook enforcement).
+ * Source: packaged `templates/cursor-codetree.mdc`.
+ */
+export function installCursorRules(projectRoot) {
+    const rulesDir = join(projectRoot, ".cursor", "rules");
+    if (!existsSync(rulesDir)) {
+        mkdirSync(rulesDir, { recursive: true });
+    }
+    const rulePath = join(rulesDir, "codetree.mdc");
+    const ruleContent = readRequiredTemplate("cursor-codetree.mdc").trimEnd() + "\n";
     writeFileSync(rulePath, ruleContent, "utf-8");
 }
+// ─── Google Antigravity (project MCP) ─────────────────────────────────────
+/**
+ * Register CodeTree in `.antigravity/mcp.json` (project-level; common Antigravity convention).
+ * Does not modify global ~/.gemini/... (avoid clobbering user-wide config).
+ */
+export function installAntigravityMcp(projectRoot, serverScriptPath) {
+    const mcpConfigPath = join(projectRoot, ".antigravity", "mcp.json");
+    mergeJsonMcpFile(mcpConfigPath, projectRoot, serverScriptPath);
+    return { success: true, message: `Antigravity MCP registered in ${mcpConfigPath}` };
+}
+// ─── OpenAI Codex (project .codex/config.toml) ────────────────────────────
+/**
+ * Merge CodeTree into `.codex/config.toml`. Skips write if existing file is invalid TOML.
+ */
+export function installCodexMcp(projectRoot, serverScriptPath) {
+    const codexDir = join(projectRoot, ".codex");
+    const codexPath = join(codexDir, "config.toml");
+    mkdirSync(codexDir, { recursive: true });
+    let doc = {};
+    if (existsSync(codexPath)) {
+        const raw = readFileSync(codexPath, "utf-8");
+        if (raw.trim()) {
+            try {
+                doc = TOML.parse(raw);
+            }
+            catch {
+                return {
+                    success: false,
+                    message: `Skipped Codex: existing ${codexPath} is not valid TOML — fix it or merge [mcp_servers.codetree] manually`,
+                };
+            }
+        }
+    }
+    const entry = buildCodetreeMcpServerEntry(projectRoot, serverScriptPath);
+    const rawMcp = doc.mcp_servers;
+    const mcpServers = rawMcp !== undefined &&
+        rawMcp !== null &&
+        typeof rawMcp === "object" &&
+        !Array.isArray(rawMcp)
+        ? { ...rawMcp }
+        : {};
+    mcpServers.codetree = {
+        command: entry.command,
+        args: entry.args,
+        cwd: entry.cwd,
+        enabled: true,
+        startup_timeout_sec: 10,
+        tool_timeout_sec: 120,
+        env: {
+            CODETREE_PROJECT_ROOT: entry.env.CODETREE_PROJECT_ROOT,
+        },
+    };
+    doc.mcp_servers = mcpServers;
+    writeFileSync(codexPath, TOML.stringify(doc), "utf-8");
+    return { success: true, message: `Codex MCP registered in ${codexPath}` };
+}
+// ─── AGENTS.md / GEMINI.md (portable instructions) ───────────────────────
+// Sources: templates/agents-codetree.snippet.md, templates/gemini-codetree.snippet.md
+/**
+ * Idempotent AGENTS.md block (Cursor, OpenAI Codex, Google Antigravity, and other agents that read AGENTS.md).
+ */
+export function installAgentsMd(projectRoot) {
+    const pathMd = join(projectRoot, "AGENTS.md");
+    const agentsBlock = readRequiredTemplate("agents-codetree.snippet.md").trim();
+    if (existsSync(pathMd)) {
+        let content = readFileSync(pathMd, "utf-8");
+        if (AGENTS_BLOCK_RE.test(content)) {
+            content = content.replace(AGENTS_BLOCK_RE, agentsBlock);
+        }
+        else {
+            content = content.trimEnd() + "\n\n" + agentsBlock + "\n";
+        }
+        writeFileSync(pathMd, content, "utf-8");
+    }
+    else {
+        writeFileSync(pathMd, agentsBlock + "\n", "utf-8");
+    }
+}
+/**
+ * GEMINI.md — short pointer for **Google Antigravity** / Gemini-first flows (see also AGENTS.md).
+ */
+export function installGeminiMd(projectRoot) {
+    const pathMd = join(projectRoot, "GEMINI.md");
+    const block = readRequiredTemplate("gemini-codetree.snippet.md").trim();
+    if (existsSync(pathMd)) {
+        let content = readFileSync(pathMd, "utf-8");
+        if (GEMINI_BLOCK_RE.test(content)) {
+            content = content.replace(GEMINI_BLOCK_RE, block);
+        }
+        else {
+            content = content.trimEnd() + "\n\n" + block + "\n";
+        }
+        writeFileSync(pathMd, content, "utf-8");
+    }
+    else {
+        writeFileSync(pathMd, block + "\n", "utf-8");
+    }
+}
 /**
  * Add .codetree/ to .gitignore.
  */

package/dist/setup/install.js.map

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package/dist/setup/template-load.d.ts

@@ -0,0 +1,9 @@
+/** Package root: .../dist/setup -> ../.. */
+export declare const CODE_TREE_PACKAGE_ROOT: string;
+export declare const TEMPLATES_DIR: string;
+/**
+ * Read a file from `templates/`. Throws if missing (broken or partial install).
+ * Resolves path and ensures the result stays inside `templates/` (directory escape safe).
+ */
+export declare function readRequiredTemplate(filename: string): string;
+//# sourceMappingURL=template-load.d.ts.map

package/dist/setup/template-load.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"template-load.d.ts","sourceRoot":"","sources":["../../src/setup/template-load.ts"],"names":[],"mappings":"AAUA,4CAA4C;AAC5C,eAAO,MAAM,sBAAsB,QAAiC,CAAC;AAErE,eAAO,MAAM,aAAa,QAA4C,CAAC;AAcvE;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAa7D"}

package/dist/setup/template-load.js

@@ -0,0 +1,39 @@
+/**
+ * Bundled templates live in `templates/` at the package root (next to `dist/`).
+ * They are included in the published npm package via package.json "files".
+ */
+import { existsSync, readFileSync } from "node:fs";
+import { join, resolve, dirname, relative, isAbsolute } from "node:path";
+import { fileURLToPath } from "node:url";
+const __dirname = dirname(fileURLToPath(import.meta.url));
+/** Package root: .../dist/setup -> ../.. */
+export const CODE_TREE_PACKAGE_ROOT = resolve(__dirname, "..", "..");
+export const TEMPLATES_DIR = join(CODE_TREE_PACKAGE_ROOT, "templates");
+/**
+ * Only flat filenames under `templates/` (no path traversal).
+ */
+function assertSafeTemplateFilename(filename) {
+    if (!filename || isAbsolute(filename)) {
+        throw new Error("CodeTree: invalid template name (empty or absolute path).");
+    }
+    if (filename.includes("..") || /[/\\]/.test(filename)) {
+        throw new Error(`CodeTree: invalid template name: ${filename}`);
+    }
+}
+/**
+ * Read a file from `templates/`. Throws if missing (broken or partial install).
+ * Resolves path and ensures the result stays inside `templates/` (directory escape safe).
+ */
+export function readRequiredTemplate(filename) {
+    assertSafeTemplateFilename(filename);
+    const p = resolve(TEMPLATES_DIR, filename);
+    const rel = relative(TEMPLATES_DIR, p);
+    if (rel.startsWith("..") || rel === "") {
+        throw new Error(`CodeTree: invalid template path for ${filename}`);
+    }
+    if (!existsSync(p)) {
+        throw new Error(`CodeTree: missing bundled template "${filename}". Expected: ${p}. Reinstall: npm i codetree-claude`);
+    }
+    return readFileSync(p, "utf-8").replace(/\r\n/g, "\n");
+}
+//# sourceMappingURL=template-load.js.map

package/dist/setup/template-load.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"template-load.js","sourceRoot":"","sources":["../../src/setup/template-load.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACnD,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AACzE,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AAEzC,MAAM,SAAS,GAAG,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AAE1D,4CAA4C;AAC5C,MAAM,CAAC,MAAM,sBAAsB,GAAG,OAAO,CAAC,SAAS,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;AAErE,MAAM,CAAC,MAAM,aAAa,GAAG,IAAI,CAAC,sBAAsB,EAAE,WAAW,CAAC,CAAC;AAEvE;;GAEG;AACH,SAAS,0BAA0B,CAAC,QAAgB;IAClD,IAAI,CAAC,QAAQ,IAAI,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;QACtC,MAAM,IAAI,KAAK,CAAC,2DAA2D,CAAC,CAAC;IAC/E,CAAC;IACD,IAAI,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;QACtD,MAAM,IAAI,KAAK,CAAC,oCAAoC,QAAQ,EAAE,CAAC,CAAC;IAClE,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,oBAAoB,CAAC,QAAgB;IACnD,0BAA0B,CAAC,QAAQ,CAAC,CAAC;IACrC,MAAM,CAAC,GAAG,OAAO,CAAC,aAAa,EAAE,QAAQ,CAAC,CAAC;IAC3C,MAAM,GAAG,GAAG,QAAQ,CAAC,aAAa,EAAE,CAAC,CAAC,CAAC;IACvC,IAAI,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,EAAE,EAAE,CAAC;QACvC,MAAM,IAAI,KAAK,CAAC,uCAAuC,QAAQ,EAAE,CAAC,CAAC;IACrE,CAAC;IACD,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;QACnB,MAAM,IAAI,KAAK,CACb,uCAAuC,QAAQ,gBAAgB,CAAC,oCAAoC,CACrG,CAAC;IACJ,CAAC;IACD,OAAO,YAAY,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;AACzD,CAAC"}

package/dist/storage/database.d.ts

@@ -40,19 +40,52 @@ export declare class Database {
     getFileCount(): number;
     upsertSymbols(filePath: string, symbols: SymbolRecord[]): void;
     searchSymbols(query: string, kind?: string, limit?: number): SymbolRecord[];
+    private rowToSymbol;
+    private searchSymbolsExact;
     getSymbolsForFile(filePath: string): SymbolRecord[];
     upsertDependencies(sourcePath: string, deps: DependencyRecord[]): void;
     findDependents(targetPath: string): DependencyRecord[];
     cacheContent(path: string, content: Buffer): void;
     getCachedContent(path: string): Buffer | null;
     evictContentCache(maxSizeMB: number): void;
+    /**
+     * Look up cached content for a file that previously had a given hash.
+     * Used for diff-based reads: find old version to compute delta.
+     * Checks the previous_content table first, then falls back to content_cache.
+     * Returns decompressed content or null if not found.
+     */
+    getCachedContentByHash(hash: string): string | null;
+    /**
+     * Save previous content before overwriting, keyed by hash.
+     * Used for diff-based reads.
+     *
+     * Cleanup strategy:
+     *   - TTL: 24h (long enough to survive long sessions / compaction).
+     *   - Hard cap: 200 rows; oldest evicted first.
+     * Both run AFTER the insert so we never delete the row we just saved.
+     */
+    savePreviousContent(hash: string, compressedContent: Buffer): void;
+    /**
+     * Get the total size of the content_cache table in bytes (compressed content).
+     */
+    getContentCacheSize(): number;
     searchFiles(pattern: string): FileRecord[];
     createSession(sessionId: string, taskDescription?: string): void;
     updateSessionAccess(sessionId: string): void;
     endSession(sessionId: string, summary?: string): void;
+    /**
+     * Most recent read timestamp by a session for a file (any tool).
+     * Returns 0 if there is no prior read.
+     */
+    getLastSessionReadAt(sessionId: string, filePath: string): number;
     logSessionRead(sessionId: string, filePath: string, toolName: string, lineStart?: number, lineEnd?: number): void;
+    /**
+     * Get list of unique files read in a session (from session_reads table, not JSON column).
+     */
+    getSessionFilesRead(sessionId: string): string[];
     logSessionModified(sessionId: string, filePath: string): void;
     logSessionSearch(sessionId: string, symbol: string): void;
+    logSessionGrep(sessionId: string, pattern: string): void;
     addSessionInsight(sessionId: string, category: string, content: string, filePaths?: string[]): void;
     getSession(sessionId: string): any | null;
     getRecentSessions(limit?: number): any[];
@@ -106,6 +139,22 @@ export declare class Database {
         grepPatterns: string[];
         fileSummaries: Record<string, string>;
     };
+    saveTokenPostings(filePath: string, tokens: Set<string>): void;
+    deleteTokenPostings(filePath: string): void;
+    loadAllTokenPostings(): Map<string, Set<string>>;
+    getTokenPostingsFileMap(): Map<string, Set<string>>;
+    saveTrigrams(filePath: string, content: string): void;
+    deleteTrigrams(filePath: string): void;
+    /**
+     * Find files that contain ALL trigrams from the query string.
+     * This narrows candidates before doing actual content search.
+     */
+    searchByTrigrams(query: string, limit?: number): string[];
+    getSymbolCount(): number;
+    /**
+     * Get symbol counts per file in a single query (avoids N+1).
+     */
+    getSymbolCountsByFile(): Map<string, number>;
     close(): void;
 }
 //# sourceMappingURL=database.d.ts.map

package/dist/storage/database.d.ts.map

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