codetree-claude 1.4.7 → 1.5.0

package/README.md

@@ -2,13 +2,15 @@
 
 **Reduce Claude Code token usage by 60-70%** by caching codebase reads in a persistent index.
 
+> **v1.5** — Now with real-time cache integrity, Windows `\r\n` support, git branch awareness, and full session tracking across all tools.
+
 ## The Problem
 
 When your team uses Claude Code, **~70% of tokens** go to re-reading the same files across conversations — Glob, Grep, and Read calls that scan the same codebase over and over.
 
 ## The Solution
 
-CodeTree indexes your codebase into a persistent SQLite database and intercepts Claude Code's file operations. When a file hasn't changed since the last read, Claude uses the cached version.
+CodeTree indexes your codebase into a persistent SQLite database and intercepts Claude Code's file operations. When a file hasn't changed since the last read, Claude uses the cached version. Every read is validated against disk — you'll never get stale content, even after git branch switches, VS Code edits, or external file changes.
 
 ### How it works
 
@@ -92,17 +94,42 @@ Edit `.codetreerc.json` in your project root:
 }
 ```
 
+## Built for Real-World Reliability
+
+CodeTree isn't just a cache — it's designed for the messy reality of daily development.
+
+### Never Stale
+- **External edits detected** — Edit a file in VS Code, save, immediately ask Claude about it. CodeTree validates disk mtime every 5 seconds per file and serves fresh content automatically.
+- **Git branch aware** — Switch branches with `git checkout` and CodeTree instantly invalidates its cache. No stale content from the old branch, no manual cache clearing.
+- **Works with any tool** — git merge, rebase, stash, sed, vim — any process that modifies files on disk is detected on the next read.
+
+### Cross-Platform
+- **Windows `\r\n` handled** — `codetree_edit` normalizes line endings for matching and preserves the original style on write. No more "old_string not found" on Windows projects.
+- **Path normalization** — Forward slashes everywhere internally, regardless of OS.
+
+### Safe at Scale
+- **Large files** — Reads over 100KB are auto-truncated with guidance to use offset/limit. No blown context windows.
+- **Large repos** — Project structure auto-collapses to top-level directories for repos with 500+ files.
+- **Smart redirects** — The hook only blocks native Read/Edit/Write/Grep/Glob when CodeTree can actually serve the request. If the file isn't cached, native tools proceed normally.
+- **Graceful degradation** — Session logging, cache validation, and all non-critical operations are wrapped in try/catch. A failure in telemetry never breaks your read or edit.
+
+### Full Session Memory
+Every CodeTree tool logs its activity — not just native Read/Grep/Glob. Hot files, search patterns, and modification history are complete across both native and CodeTree tools, giving you accurate session context and compaction restores.
+
 ## MCP Tools
 
-CodeTree exposes 5 tools that Claude Code uses instead of native Read/Grep/Glob:
+CodeTree exposes 8 tools that Claude Code uses instead of native Read/Grep/Glob:
 
 | Tool | Replaces | What it does |
 |------|----------|-------------|
-| `codetree_read` | Read | Cached file read with symbol metadata |
-| `codetree_search` | Grep | Symbol index search (functions, classes, types) |
-| `codetree_structure` | Glob | Project tree browser with language stats |
-| `codetree_find_refs` | — | Cross-file reference finder |
-| `codetree_summary` | — | Full project overview for session start |
+| `codetree_read` | Read | Cached file read with symbol metadata. Mtime-validated, never stale. |
+| `codetree_edit` | Edit | File edit without prior Read. Handles `\r\n` line endings on Windows. |
+| `codetree_write` | Write | File write without prior Read. Auto-creates parent directories. |
+| `codetree_search` | Grep | Symbol index search + optional content search with fast pre-filtering. |
+| `codetree_structure` | Glob | Project tree browser. Auto-collapses large repos to top-level directories. |
+| `codetree_find_refs` | — | Cross-file reference finder with fast file-skip for common symbols. |
+| `codetree_summary` | — | Full project overview for session start. |
+| `codetree_memory` | — | Persistent session memory — save and recall insights across conversations. |
 
 ## Supported Languages
 
@@ -111,37 +138,52 @@ Symbol extraction works for:
 - Python
 - Java / Kotlin / C#
 - Go
-- All other files get indexed (content cached) but without symbol extraction
+
+Content caching and indexing works for all text files, including:
+- Prisma, GraphQL, Protobuf
+- SQL, YAML, TOML, JSON
+- Markdown, HTML, CSS/SCSS
+- Shell scripts, Dockerfiles, Terraform
+- `.env` and config files
 
 ## Architecture
 
 ```
-┌─────────────────────────────────────────────┐
-│  Claude Code                                │
-│  ┌───────────────────────────────────────┐  │
-│  │ PreToolUse Hook                       │  │
-│  │ Intercepts Read/Grep/Glob             │  │
-│  │ Queries IPC server (<30ms)            │  │
-│  │ Redirects to MCP tools if cached      │  │
-│  └─────────────┬─────────────────────────┘  │
-│                │                            │
-│  ┌─────────────▼─────────────────────────┐  │
-│  │ MCP Server (codetree)                 │  │
-│  │ ├── codetree_read                     │  │
-│  │ ├── codetree_search                   │  │
-│  │ ├── codetree_structure                │  │
-│  │ ├── codetree_find_refs                │  │
-│  │ └── codetree_summary                  │  │
-│  └─────────────┬─────────────────────────┘  │
-│                │                            │
-│  ┌─────────────▼─────────────────────────┐  │
-│  │ Indexer + File Watcher                │  │
-│  │ ├── SQLite database (persistent)      │  │
-│  │ ├── LRU in-memory cache (hot files)   │  │
-│  │ ├── Symbol extraction (regex-based)   │  │
-│  │ └── chokidar watcher (live updates)   │  │
-│  └───────────────────────────────────────┘  │
-└─────────────────────────────────────────────┘
+┌───────────────────────────────────────────────────┐
+│  Claude Code                                      │
+│  ┌─────────────────────────────────────────────┐  │
+│  │ Hooks (5 lifecycle events)                  │  │
+│  │ ├── PreToolUse: redirect Read/Grep/Glob/    │  │
+│  │ │   Edit/Write → CodeTree if cached         │  │
+│  │ ├── PostToolUse: log session activity       │  │
+│  │ ├── SessionStart: inject prior knowledge    │  │
+│  │ ├── PreCompact: save context snapshot        │  │
+│  │ └── PostCompact: restore context from cache │  │
+│  └──────────────┬──────────────────────────────┘  │
+│                 │                                 │
+│  ┌──────────────▼──────────────────────────────┐  │
+│  │ MCP Server (8 tools)                        │  │
+│  │ ├── codetree_read    (mtime-validated)      │  │
+│  │ ├── codetree_edit    (\r\n-safe)             │  │
+│  │ ├── codetree_write                          │  │
+│  │ ├── codetree_search  (pre-filtered)         │  │
+│  │ ├── codetree_structure (auto-collapse)      │  │
+│  │ ├── codetree_find_refs                      │  │
+│  │ ├── codetree_summary                        │  │
+│  │ └── codetree_memory  (cross-session)        │  │
+│  └──────────────┬──────────────────────────────┘  │
+│                 │                                 │
+│  ┌──────────────▼──────────────────────────────┐  │
+│  │ Indexer + Cache Layer                       │  │
+│  │ ├── SQLite database (persistent index)      │  │
+│  │ ├── LRU cache (hot files, mtime-checked)    │  │
+│  │ ├── Symbol extraction (JS/TS/Py/Java/Go)    │  │
+│  │ ├── File watcher (chokidar, live updates)   │  │
+│  │ ├── Git HEAD watcher (branch switch detect) │  │
+│  │ ├── Session memory (reads/edits/insights)   │  │
+│  │ └── Disk manager (space monitoring)         │  │
+│  └─────────────────────────────────────────────┘  │
+└───────────────────────────────────────────────────┘
 ```
 
 ## Org-wide Rollout

package/dist/hook/post-tool-use.js

@@ -55,6 +55,10 @@ async function main() {
             }
             break;
         }
+        // codetree_edit/write log via MCP tool handler directly — skip here to avoid double-logging
+        case "codetree_edit":
+        case "codetree_write":
+            break;
     }
     process.exit(0);
 }

package/dist/hook/post-tool-use.js.map

@@ -1 +1 @@
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package/dist/hook/pre-tool-use.bundled.js

@@ -107,6 +107,10 @@ async function handleEdit(port, input) {
   if (!filePath) {
     process.exit(0);
   }
+  const result = await queryIpc(port, `/check?path=${encodeURIComponent(filePath)}`);
+  if (!result?.cached) {
+    process.exit(0);
+  }
   process.stderr.write(`Use the codetree_edit tool instead of Edit. It works without requiring a prior Read call. Call codetree_edit with file_path="${filePath}", old_string, and new_string.`);
   process.exit(2);
 }
@@ -115,6 +119,10 @@ async function handleWrite(port, input) {
   if (!filePath) {
     process.exit(0);
   }
+  const result = await queryIpc(port, `/check?path=${encodeURIComponent(filePath)}`);
+  if (!result?.cached) {
+    process.exit(0);
+  }
   process.stderr.write(`Use the codetree_write tool instead of Write. It works without requiring a prior Read call. Call codetree_write with file_path="${filePath}" and content.`);
   process.exit(2);
 }

package/dist/hook/pre-tool-use.js

@@ -76,6 +76,11 @@ async function handleEdit(port, input) {
     if (!filePath) {
         process.exit(0);
     }
+    // Only redirect if file is actually cached — if codetree_edit fails, user can retry with native Edit
+    const result = await queryIpc(port, `/check?path=${encodeURIComponent(filePath)}`);
+    if (!result?.cached) {
+        process.exit(0); // Not cached → allow native Edit
+    }
     process.stderr.write(`Use the codetree_edit tool instead of Edit. ` +
         `It works without requiring a prior Read call. ` +
         `Call codetree_edit with file_path="${filePath}", old_string, and new_string.`);
@@ -86,6 +91,11 @@ async function handleWrite(port, input) {
     if (!filePath) {
         process.exit(0);
     }
+    // Only redirect if file is actually cached
+    const result = await queryIpc(port, `/check?path=${encodeURIComponent(filePath)}`);
+    if (!result?.cached) {
+        process.exit(0); // Not cached → allow native Write
+    }
     process.stderr.write(`Use the codetree_write tool instead of Write. ` +
         `It works without requiring a prior Read call. ` +
         `Call codetree_write with file_path="${filePath}" and content.`);

package/dist/hook/pre-tool-use.js.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/indexer/extractors/types.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,UAAU,GAAG,OAAO,GAAG,UAAU,GAAG,QAAQ,GAAG,QAAQ,GAAG,MAAM,GAAG,WAAW,GAAG,MAAM,GAAG,QAAQ,GAAG,UAAU,CAAC;IACtH,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,MAAM,WAAW,mBAAmB;IAClC,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,OAAO,CAAC;CACrB;AAED,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,eAAe,EAAE,CAAC;IAC3B,YAAY,EAAE,mBAAmB,EAAE,CAAC;CACrC;AAED,MAAM,WAAW,eAAe;IAC9B,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,gBAAgB,CAAC;CAC9D;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAsC9D"}

package/dist/indexer/extractors/types.js

@@ -27,6 +27,12 @@ export function detectLanguage(filePath) {
         css: "css", scss: "scss", less: "less",
         html: "html", htm: "html",
         sql: "sql",
+        prisma: "prisma",
+        graphql: "graphql", gql: "graphql",
+        proto: "protobuf",
+        toml: "toml",
+        ini: "ini",
+        env: "dotenv",
         sh: "shell", bash: "shell", zsh: "shell",
         dockerfile: "dockerfile",
         tf: "terraform", hcl: "terraform",

package/dist/indexer/extractors/types.js.map

@@ -1 +1 @@
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+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/indexer/extractors/types.ts"],"names":[],"mappings":"AAyBA;;GAEG;AACH,MAAM,UAAU,cAAc,CAAC,QAAgB;IAC7C,MAAM,GAAG,GAAG,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,WAAW,EAAE,CAAC;IACrD,IAAI,CAAC,GAAG;QAAE,OAAO,IAAI,CAAC;IAEtB,MAAM,GAAG,GAA2B;QAClC,EAAE,EAAE,YAAY,EAAE,GAAG,EAAE,YAAY,EAAE,GAAG,EAAE,YAAY,EAAE,GAAG,EAAE,YAAY;QACzE,EAAE,EAAE,YAAY,EAAE,GAAG,EAAE,YAAY,EAAE,GAAG,EAAE,YAAY,EAAE,GAAG,EAAE,YAAY;QACzE,EAAE,EAAE,QAAQ,EAAE,GAAG,EAAE,QAAQ;QAC3B,IAAI,EAAE,MAAM;QACZ,EAAE,EAAE,IAAI;QACR,EAAE,EAAE,MAAM;QACV,EAAE,EAAE,MAAM;QACV,EAAE,EAAE,QAAQ;QACZ,GAAG,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,KAAK;QAC7D,GAAG,EAAE,KAAK;QACV,KAAK,EAAE,OAAO;QACd,EAAE,EAAE,QAAQ,EAAE,GAAG,EAAE,QAAQ;QAC3B,KAAK,EAAE,OAAO;QACd,GAAG,EAAE,KAAK;QACV,MAAM,EAAE,QAAQ;QAChB,IAAI,EAAE,MAAM;QACZ,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM;QACzB,EAAE,EAAE,UAAU;QACd,GAAG,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM;QACtC,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM;QACzB,GAAG,EAAE,KAAK;QACV,MAAM,EAAE,QAAQ;QAChB,OAAO,EAAE,SAAS,EAAE,GAAG,EAAE,SAAS;QAClC,KAAK,EAAE,UAAU;QACjB,IAAI,EAAE,MAAM;QACZ,GAAG,EAAE,KAAK;QACV,GAAG,EAAE,QAAQ;QACb,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,OAAO;QACxC,UAAU,EAAE,YAAY;QACxB,EAAE,EAAE,WAAW,EAAE,GAAG,EAAE,WAAW;KAClC,CAAC;IAEF,OAAO,GAAG,CAAC,GAAG,CAAC,IAAI,IAAI,CAAC;AAC1B,CAAC"}

package/dist/indexer/indexer.d.ts

@@ -39,8 +39,16 @@ export declare class Indexer {
      * Remove a file from the index (when it's deleted from disk).
      */
     removeFile(absPath: string): void;
+    /**
+     * Invalidate all in-memory caches without deleting indexed data.
+     * Used after branch switches — forces mtime revalidation on next file access.
+     */
+    invalidateCaches(): void;
+    private lastValidated;
+    private static REVALIDATE_INTERVAL_MS;
     /**
      * Read a file from cache. Returns null on cache miss.
+     * Validates mtime periodically to catch external edits and branch switches.
      */
     readCached(relPath: string): string | null;
     /**

package/dist/indexer/indexer.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"indexer.d.ts","sourceRoot":"","sources":["../../src/indexer/indexer.ts"],"names":[],"mappings":"AAGA,OAAO,EAAiB,KAAK,cAAc,EAAE,MAAM,cAAc,CAAC;AAClE,OAAO,EAAE,QAAQ,EAA6D,MAAM,wBAAwB,CAAC;AAC7G,OAAO,EAAE,YAAY,EAAmB,MAAM,qBAAqB,CAAC;AAMpE,MAAM,WAAW,UAAU;IACzB,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,aAAa;IAC5B,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,IAAI,CAAC;IACtD,OAAO,CAAC,EAAE,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,KAAK,IAAI,CAAC;IAC/C,UAAU,CAAC,EAAE,CAAC,KAAK,EAAE,UAAU,KAAK,IAAI,CAAC;CAC1C;AAED,qBAAa,OAAO;IAClB,OAAO,CAAC,EAAE,CAAW;IACrB,OAAO,CAAC,KAAK,CAAe;IAC5B,OAAO,CAAC,YAAY,CAAe;IACnC,OAAO,CAAC,UAAU,CAAoB;IACtC,OAAO,CAAC,MAAM,CAAiB;IAC/B,OAAO,CAAC,QAAQ,CAAS;IACzB,OAAO,CAAC,KAAK,CAAS;gBAEV,MAAM,EAAE,cAAc,EAAE,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,YAAY;IAQ/D,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAK3B,OAAO,IAAI,OAAO;IAIlB,UAAU,IAAI,OAAO;IAIrB;;OAEG;IACG,QAAQ,CAAC,MAAM,CAAC,EAAE,aAAa,GAAG,OAAO,CAAC,UAAU,CAAC;IA2C3D;;OAEG;IACH,SAAS,CAAC,OAAO,EAAE,MAAM,GAAG;QAAE,WAAW,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI;IA0G1D;;OAEG;IACH,UAAU,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI;IAMjC;;;OAGG;IACH,gBAAgB,IAAI,IAAI;IAMxB,OAAO,CAAC,aAAa,CAA6B;IAClD,OAAO,CAAC,MAAM,CAAC,sBAAsB,CAAQ;IAE7C;;;OAGG;IACH,UAAU,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAyE1C;;OAEG;IACH,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO;IAatC;;OAEG;IACH,cAAc,IAAI,MAAM,CAAC,MAAM,EAAE;QAAE,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,WAAW,EAAE,MAAM,CAAA;KAAE,CAAC;IAiBnH,QAAQ,IAAI,UAAU;IAatB,OAAO,CAAC,YAAY;IAMpB,OAAO,CAAC,OAAO;IAsBf,OAAO,CAAC,iBAAiB;CAa1B"}

package/dist/indexer/indexer.js

@@ -179,34 +179,89 @@ export class Indexer {
         this.db.deleteFile(relPath);
         this.cache.delete(relPath);
     }
+    /**
+     * Invalidate all in-memory caches without deleting indexed data.
+     * Used after branch switches — forces mtime revalidation on next file access.
+     */
+    invalidateCaches() {
+        this.cache.clear();
+        this.lastValidated.clear();
+    }
+    // Track last mtime validation time per file — avoid statSync on every read
+    lastValidated = new Map();
+    static REVALIDATE_INTERVAL_MS = 5000; // check disk mtime at most every 5s per file
     /**
      * Read a file from cache. Returns null on cache miss.
+     * Validates mtime periodically to catch external edits and branch switches.
      */
     readCached(relPath) {
         const normalized = normalizePath(relPath);
         // Try in-memory LRU first
         const cached = this.cache.get(normalized);
-        if (cached)
+        if (cached) {
+            // Periodic mtime revalidation — catches external edits (VS Code, git, etc.)
+            const now = Date.now();
+            const lastCheck = this.lastValidated.get(normalized) || 0;
+            if (now - lastCheck > Indexer.REVALIDATE_INTERVAL_MS) {
+                this.lastValidated.set(normalized, now);
+                try {
+                    const absPath = join(this.config.projectRoot, normalized);
+                    const stat = statSync(absPath);
+                    if (Math.floor(stat.mtimeMs) !== Math.floor(cached.mtimeMs)) {
+                        // File changed externally — re-index and serve fresh
+                        this.cache.delete(normalized);
+                        this.indexFile(absPath);
+                        const fresh = this.cache.get(normalized);
+                        return fresh ? fresh.content : null;
+                    }
+                }
+                catch {
+                    // File deleted externally
+                    this.cache.delete(normalized);
+                    return null;
+                }
+            }
             return cached.content;
+        }
         // Try SQLite content cache
+        const fileRecord = this.db.getFile(normalized);
         const dbContent = this.db.getCachedContent(normalized);
-        if (dbContent) {
+        if (dbContent && fileRecord) {
+            // Validate mtime against disk before serving stale data
+            const absPath = join(this.config.projectRoot, normalized);
+            let mtimeValid = true;
             try {
-                const content = inflateSync(dbContent).toString("utf-8");
-                // Promote to LRU
-                const fileRecord = this.db.getFile(normalized);
-                if (fileRecord) {
+                const stat = statSync(absPath);
+                if (fileRecord.mtime_ms !== Math.floor(stat.mtimeMs)) {
+                    mtimeValid = false;
+                    // File changed — re-index it now
+                    this.indexFile(absPath);
+                    // Re-read from updated cache
+                    const freshCached = this.cache.get(normalized);
+                    if (freshCached)
+                        return freshCached.content;
+                    return null;
+                }
+            }
+            catch {
+                // File doesn't exist anymore
+                return null;
+            }
+            if (mtimeValid) {
+                try {
+                    const content = inflateSync(dbContent).toString("utf-8");
+                    // Promote to LRU
                     this.cache.set(normalized, {
                         content,
                         hash: fileRecord.hash,
                         mtimeMs: fileRecord.mtime_ms,
                         size: fileRecord.size,
                     });
+                    return content;
+                }
+                catch {
+                    return null;
                 }
-                return content;
-            }
-            catch {
-                return null;
             }
         }
         return null;

package/dist/indexer/indexer.js.map

@@ -1 +1 @@
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package/dist/indexer/watcher.d.ts

@@ -2,12 +2,15 @@ import { type CodeTreeConfig } from "../config.js";
 import type { Indexer } from "./indexer.js";
 export declare class FileWatcher {
     private watcher;
+    private gitWatcher;
     private config;
     private indexer;
     private debounceTimers;
+    private branchRescanTimer;
     private running;
     constructor(config: CodeTreeConfig, indexer: Indexer);
     start(): void;
+    private startGitWatcher;
     stop(): void;
     isRunning(): boolean;
     private handleChange;

package/dist/indexer/watcher.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../src/indexer/watcher.ts"],"names":[],"mappings":"AAEA,OAAO,EAAiB,KAAK,cAAc,EAAE,MAAM,cAAc,CAAC;AAClE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAE5C,qBAAa,WAAW;IACtB,OAAO,CAAC,OAAO,CAA0B;IACzC,OAAO,CAAC,MAAM,CAAiB;IAC/B,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,cAAc,CAAyD;IAC/E,OAAO,CAAC,OAAO,CAAS;gBAEZ,MAAM,EAAE,cAAc,EAAE,OAAO,EAAE,OAAO;IAKpD,KAAK,IAAI,IAAI;IA4Bb,IAAI,IAAI,IAAI;IAYZ,SAAS,IAAI,OAAO;IAIpB,OAAO,CAAC,YAAY;IAqBpB,OAAO,CAAC,YAAY;CAQrB"}
+{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../src/indexer/watcher.ts"],"names":[],"mappings":"AAGA,OAAO,EAAiB,KAAK,cAAc,EAAE,MAAM,cAAc,CAAC;AAClE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAE5C,qBAAa,WAAW;IACtB,OAAO,CAAC,OAAO,CAA0B;IACzC,OAAO,CAAC,UAAU,CAA0B;IAC5C,OAAO,CAAC,MAAM,CAAiB;IAC/B,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,cAAc,CAAyD;IAC/E,OAAO,CAAC,iBAAiB,CAA8C;IACvE,OAAO,CAAC,OAAO,CAAS;gBAEZ,MAAM,EAAE,cAAc,EAAE,OAAO,EAAE,OAAO;IAKpD,KAAK,IAAI,IAAI;IA+Bb,OAAO,CAAC,eAAe;IAoBvB,IAAI,IAAI,IAAI;IAoBZ,SAAS,IAAI,OAAO;IAIpB,OAAO,CAAC,YAAY;IAqBpB,OAAO,CAAC,YAAY;CAQrB"}

package/dist/indexer/watcher.js

@@ -1,11 +1,14 @@
 import chokidar from "chokidar";
-import { resolve } from "node:path";
+import { resolve, join } from "node:path";
+import { existsSync } from "node:fs";
 import { normalizePath } from "../config.js";
 export class FileWatcher {
     watcher = null;
+    gitWatcher = null;
     config;
     indexer;
     debounceTimers = new Map();
+    branchRescanTimer = null;
     running = false;
     constructor(config, indexer) {
         this.config = config;
@@ -33,13 +36,42 @@ export class FileWatcher {
         this.watcher.on("change", (path) => this.handleChange(path));
         this.watcher.on("add", (path) => this.handleChange(path));
         this.watcher.on("unlink", (path) => this.handleDelete(path));
+        // Watch .git/HEAD for branch switches (git checkout, git switch)
+        this.startGitWatcher();
         this.running = true;
     }
+    startGitWatcher() {
+        const gitHead = join(this.config.projectRoot, ".git", "HEAD");
+        if (!existsSync(gitHead))
+            return;
+        this.gitWatcher = chokidar.watch(gitHead, {
+            persistent: true,
+            ignoreInitial: true,
+        });
+        this.gitWatcher.on("change", () => {
+            // Debounce: git operations may touch HEAD multiple times
+            if (this.branchRescanTimer)
+                clearTimeout(this.branchRescanTimer);
+            this.branchRescanTimer = setTimeout(() => {
+                this.branchRescanTimer = null;
+                console.error("[codetree] Branch switch detected — invalidating caches");
+                this.indexer.invalidateCaches();
+            }, 500);
+        });
+    }
     stop() {
         if (this.watcher) {
             this.watcher.close();
             this.watcher = null;
         }
+        if (this.gitWatcher) {
+            this.gitWatcher.close();
+            this.gitWatcher = null;
+        }
+        if (this.branchRescanTimer) {
+            clearTimeout(this.branchRescanTimer);
+            this.branchRescanTimer = null;
+        }
         for (const timer of this.debounceTimers.values()) {
             clearTimeout(timer);
         }

package/dist/indexer/watcher.js.map

@@ -1 +1 @@
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+{"version":3,"file":"watcher.js","sourceRoot":"","sources":["../../src/indexer/watcher.ts"],"names":[],"mappings":"AAAA,OAAO,QAA4B,MAAM,UAAU,CAAC;AACpD,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,aAAa,EAAuB,MAAM,cAAc,CAAC;AAGlE,MAAM,OAAO,WAAW;IACd,OAAO,GAAqB,IAAI,CAAC;IACjC,UAAU,GAAqB,IAAI,CAAC;IACpC,MAAM,CAAiB;IACvB,OAAO,CAAU;IACjB,cAAc,GAA+C,IAAI,GAAG,EAAE,CAAC;IACvE,iBAAiB,GAAyC,IAAI,CAAC;IAC/D,OAAO,GAAG,KAAK,CAAC;IAExB,YAAY,MAAsB,EAAE,OAAgB;QAClD,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAC;IACzB,CAAC;IAED,KAAK;QACH,IAAI,IAAI,CAAC,OAAO;YAAE,OAAO;QAEzB,MAAM,OAAO,GAAG;YACd,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC;YAC9C,iBAAiB;YACjB,oBAAoB;YACpB,YAAY;SACb,CAAC;QAEF,IAAI,CAAC,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE;YACrD,OAAO;YACP,UAAU,EAAE,IAAI;YAChB,aAAa,EAAE,IAAI;YACnB,UAAU,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,UAAU;YACxC,gBAAgB,EAAE;gBAChB,kBAAkB,EAAE,GAAG;gBACvB,YAAY,EAAE,GAAG;aAClB;SACF,CAAC,CAAC;QAEH,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC;QAC7D,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC,KAAK,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC;QAC1D,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC;QAE7D,iEAAiE;QACjE,IAAI,CAAC,eAAe,EAAE,CAAC;QAEvB,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC;IACtB,CAAC;IAEO,eAAe;QACrB,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;QAC9D,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;YAAE,OAAO;QAEjC,IAAI,CAAC,UAAU,GAAG,QAAQ,CAAC,KAAK,CAAC,OAAO,EAAE;YACxC,UAAU,EAAE,IAAI;YAChB,aAAa,EAAE,IAAI;SACpB,CAAC,CAAC;QAEH,IAAI,CAAC,UAAU,CAAC,EAAE,CAAC,QAAQ,EAAE,GAAG,EAAE;YAChC,yDAAyD;YACzD,IAAI,IAAI,CAAC,iBAAiB;gBAAE,YAAY,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;YACjE,IAAI,CAAC,iBAAiB,GAAG,UAAU,CAAC,GAAG,EAAE;gBACvC,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC;gBAC9B,OAAO,CAAC,KAAK,CAAC,yDAAyD,CAAC,CAAC;gBACzE,IAAI,CAAC,OAAO,CAAC,gBAAgB,EAAE,CAAC;YAClC,CAAC,EAAE,GAAG,CAAC,CAAC;QACV,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI;QACF,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YACjB,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,CAAC;YACrB,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC;QACtB,CAAC;QACD,IAAI,IAAI,CAAC,UAAU,EAAE,CAAC;YACpB,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,CAAC;YACxB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC;QACzB,CAAC;QACD,IAAI,IAAI,CAAC,iBAAiB,EAAE,CAAC;YAC3B,YAAY,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;YACrC,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC;QAChC,CAAC;QACD,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,EAAE,CAAC;YACjD,YAAY,CAAC,KAAK,CAAC,CAAC;QACtB,CAAC;QACD,IAAI,CAAC,cAAc,CAAC,KAAK,EAAE,CAAC;QAC5B,IAAI,CAAC,OAAO,GAAG,KAAK,CAAC;IACvB,CAAC;IAED,SAAS;QACP,OAAO,IAAI,CAAC,OAAO,CAAC;IACtB,CAAC;IAEO,YAAY,CAAC,IAAY;QAC/B,MAAM,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;QAC9B,MAAM,GAAG,GAAG,aAAa,CAAC,OAAO,CAAC,CAAC;QAEnC,0CAA0C;QAC1C,MAAM,QAAQ,GAAG,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAC9C,IAAI,QAAQ;YAAE,YAAY,CAAC,QAAQ,CAAC,CAAC;QAErC,IAAI,CAAC,cAAc,CAAC,GAAG,CACrB,GAAG,EACH,UAAU,CAAC,GAAG,EAAE;YACd,IAAI,CAAC,cAAc,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YAChC,IAAI,CAAC;gBACH,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC;YAClC,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,OAAO,CAAC,KAAK,CAAC,gCAAgC,GAAG,GAAG,EAAE,GAAG,CAAC,CAAC;YAC7D,CAAC;QACH,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,UAAU,CAAC,CACjC,CAAC;IACJ,CAAC;IAEO,YAAY,CAAC,IAAY;QAC/B,MAAM,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;QAC9B,IAAI,CAAC;YACH,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC;QACnC,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,CAAC,KAAK,CAAC,+BAA+B,aAAa,CAAC,OAAO,CAAC,cAAc,EAAE,GAAG,CAAC,CAAC;QAC1F,CAAC;IACH,CAAC;CACF"}

package/dist/server/mcp-server.js

@@ -62,8 +62,8 @@ async function main() {
     const findRefsTool = createFindRefsTool(config, indexer, db);
     const summaryTool = createSummaryTool(config, db);
     const memoryTool = createMemoryTool(config, db);
-    const editTool = createEditTool(config, indexer);
-    const writeTool = createWriteTool(config, indexer);
+    const editTool = createEditTool(config, indexer, db);
+    const writeTool = createWriteTool(config, indexer, db);
     const tools = [readTool, searchTool, structureTool, findRefsTool, summaryTool, memoryTool, editTool, writeTool];
     const toolMap = new Map(tools.map((t) => [t.name, t]));
     // Create MCP server

package/dist/server/mcp-server.js.map

@@ -1 +1 @@
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package/dist/server/tools/codetree-edit.d.ts

@@ -1,5 +1,6 @@
 import { type CodeTreeConfig } from "../../config.js";
 import type { Indexer } from "../../indexer/indexer.js";
+import type { Database } from "../../storage/database.js";
 export interface EditParams {
     file_path: string;
     old_string: string;
@@ -12,7 +13,7 @@ export interface EditResult {
     replacements: number;
     message: string;
 }
-export declare function createEditTool(config: CodeTreeConfig, indexer: Indexer): {
+export declare function createEditTool(config: CodeTreeConfig, indexer: Indexer, db: Database): {
     name: string;
     description: string;
     inputSchema: {