codesift-mcp 0.7.0 → 0.8.4

package/dist/tools/yii-migrations-tools.js

@@ -0,0 +1,543 @@
+/**
+ * Yii2 migrations audit (N2).
+ *
+ * Yii2 ships its own PHP-DSL migration system — `extends Migration` with
+ * `$this->createTable()`, `$this->addColumn()`, `$this->dropTable()`, etc.
+ * The generic SQL toolchain (migration_lint, analyze_schema, sql_audit) is
+ * auto-loaded for composer.json projects but parses only `.sql` files, so
+ * the 379 migrations in tgm-panel are invisible to it.
+ *
+ * This tool fills that gap. For each migration class we:
+ *   1. Map the DSL calls to a structured operation list
+ *      (create_table, drop_table, add_column, ...).
+ *   2. Run audit checks per migration:
+ *        - missing_safe_down       (irreversible)
+ *        - drop_without_safety     (drop in safeUp without index/backup hint)
+ *        - alter_without_online_ddl (alter on large tables without
+ *                                    ALGORITHM=INPLACE, LOCK=NONE for MySQL 8)
+ *        - fk_without_index        (addForeignKey on a column without
+ *                                   a corresponding createIndex earlier)
+ *   3. Surface a per-table operation index (which migrations touch table X).
+ *
+ * The DSL parser is deliberately regex-based, not tree-sitter. Migration
+ * methods follow a small, stable grammar (a few verbs from yii\\db\\Migration
+ * with predictable argument shapes) and the AST coverage we'd buy with a
+ * full walker isn't worth the cost. The audit is a discovery tool, not a
+ * gate — false positives are acceptable, false negatives are the failure
+ * mode we minimize.
+ */
+import { readFile } from "node:fs/promises";
+import { join } from "node:path";
+import { getCodeIndex } from "./index-tools.js";
+const OP_MATCHERS = [
+    {
+        // $this->createTable('users', [...])  — plain string OR ::tableName() call.
+        re: /\$this->createTable\s*\(\s*(?:['"]([^'"]+)['"]|([\w\\]+)::tableName\s*\(\s*\))/g,
+        build: (m, line) => ({
+            kind: "create_table",
+            table: m[1] ?? m[2] ?? null,
+            raw: "createTable",
+            line,
+        }),
+    },
+    {
+        re: /\$this->dropTable\s*\(\s*(?:['"]([^'"]+)['"]|([\w\\]+)::tableName\s*\(\s*\))/g,
+        build: (m, line) => ({
+            kind: "drop_table",
+            table: m[1] ?? m[2] ?? null,
+            raw: "dropTable",
+            line,
+        }),
+    },
+    {
+        re: /\$this->renameTable\s*\(\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "rename_table",
+            table: m[1],
+            raw: "renameTable",
+            line,
+        }),
+    },
+    {
+        re: /\$this->addColumn\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "add_column",
+            table: m[1],
+            column: m[2],
+            raw: "addColumn",
+            line,
+        }),
+    },
+    {
+        re: /\$this->dropColumn\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "drop_column",
+            table: m[1],
+            column: m[2],
+            raw: "dropColumn",
+            line,
+        }),
+    },
+    {
+        re: /\$this->alterColumn\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "alter_column",
+            table: m[1],
+            column: m[2],
+            raw: "alterColumn",
+            line,
+        }),
+    },
+    {
+        re: /\$this->renameColumn\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "rename_column",
+            table: m[1],
+            column: m[2],
+            raw: "renameColumn",
+            line,
+        }),
+    },
+    {
+        re: /\$this->createIndex\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "create_index",
+            table: m[2],
+            index_name: m[1],
+            raw: "createIndex",
+            line,
+        }),
+    },
+    {
+        re: /\$this->dropIndex\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "drop_index",
+            table: m[2],
+            index_name: m[1],
+            raw: "dropIndex",
+            line,
+        }),
+    },
+    {
+        re: /\$this->addPrimaryKey\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "add_primary_key",
+            table: m[2],
+            index_name: m[1],
+            raw: "addPrimaryKey",
+            line,
+        }),
+    },
+    {
+        re: /\$this->dropPrimaryKey\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "drop_primary_key",
+            table: m[2],
+            index_name: m[1],
+            raw: "dropPrimaryKey",
+            line,
+        }),
+    },
+    {
+        // addForeignKey('fk_name', 'table', 'column', 'refTable', 'refColumn', ...)
+        re: /\$this->addForeignKey\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "add_foreign_key",
+            fk_name: m[1],
+            table: m[2],
+            column: m[3],
+            raw: "addForeignKey",
+            line,
+        }),
+    },
+    {
+        re: /\$this->dropForeignKey\s*\(\s*['"]([^'"]+)['"]\s*,\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "drop_foreign_key",
+            fk_name: m[1],
+            table: m[2],
+            raw: "dropForeignKey",
+            line,
+        }),
+    },
+    {
+        re: /\$this->execute\s*\(\s*['"`]/g,
+        build: (_m, line) => ({
+            kind: "execute_raw_sql",
+            table: null,
+            raw: "execute",
+            line,
+        }),
+    },
+    {
+        re: /\$this->insert\s*\(\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "insert",
+            table: m[1],
+            raw: "insert",
+            line,
+        }),
+    },
+    {
+        re: /\$this->batchInsert\s*\(\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "batch_insert",
+            table: m[1],
+            raw: "batchInsert",
+            line,
+        }),
+    },
+    {
+        re: /\$this->update\s*\(\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "update",
+            table: m[1],
+            raw: "update",
+            line,
+        }),
+    },
+    {
+        re: /\$this->delete\s*\(\s*['"]([^'"]+)['"]/g,
+        build: (m, line) => ({
+            kind: "delete",
+            table: m[1],
+            raw: "delete",
+            line,
+        }),
+    },
+];
+// ---------------------------------------------------------------------------
+// Implementation
+// ---------------------------------------------------------------------------
+const MIGRATION_BASE_NAMES = new Set(["Migration"]);
+const MIGRATION_FILENAME_RE = /(?:^|\/)m\d+_\d+_[\w-]+\.php$/;
+function isMigrationHierarchy(cls, index, visited = new Set(), depth = 0) {
+    if (depth > 5)
+        return false;
+    if (visited.has(cls.name))
+        return false;
+    visited.add(cls.name);
+    const exts = cls.extends ?? [];
+    for (const baseFqcn of exts) {
+        const last = baseFqcn.split(/[\\\\]+/).pop() ?? baseFqcn;
+        if (MIGRATION_BASE_NAMES.has(last))
+            return true;
+        const baseSym = index.symbols.find((s) => s.kind === "class" && s.name === last);
+        if (baseSym && isMigrationHierarchy(baseSym, index, visited, depth + 1)) {
+            return true;
+        }
+    }
+    if (!cls.extends && cls.source) {
+        return /extends\s+(?:\\?yii\\db\\Migration|Migration)\b/.test(cls.source);
+    }
+    return false;
+}
+export async function analyzeYiiMigrations(repo, options) {
+    const index = await getCodeIndex(repo);
+    if (!index)
+        throw new Error(`Repository "${repo}" not found.`);
+    const ruleFilter = options?.rules ? new Set(options.rules) : null;
+    const filePattern = options?.file_pattern;
+    // Find migration class symbols. We require BOTH a Yii2 migration
+    // filename pattern AND a Migration ancestor — file name alone is a weak
+    // signal (some app code sits in folders named `migrations/`), and class
+    // alone misses tgm-panel's `extends Model` data-fix scripts which we
+    // intentionally exclude.
+    const migrationClasses = index.symbols.filter((s) => {
+        if (s.kind !== "class")
+            return false;
+        if (!s.file.endsWith(".php"))
+            return false;
+        if (!MIGRATION_FILENAME_RE.test(s.file))
+            return false;
+        if (filePattern && !s.file.includes(filePattern))
+            return false;
+        if (!isMigrationHierarchy(s, index))
+            return false;
+        return true;
+    });
+    const migrations = [];
+    const byTable = new Map();
+    for (const cls of migrationClasses) {
+        let content;
+        try {
+            content = await readFile(join(index.root, cls.file), "utf-8");
+        }
+        catch {
+            continue;
+        }
+        // Locate up/down method bodies. We approximate by finding the method
+        // header and grabbing the bytes between the next `{` and a balanced `}`.
+        // Yii2 method names: bare `up`/`down` (all lowercase) OR `safeUp`/`safeDown`
+        // (camelCase). Regex must accept both cases — the first version used
+        // `(?:safe)?Up` which only matched the camelCase form.
+        const upInfo = findMethodBody(content, /(?:safeUp|up)/);
+        const downInfo = findMethodBody(content, /(?:safeDown|down)/);
+        const isSafeTransactional = /\bfunction\s+safe(?:Up|Down)\s*\(/.test(content);
+        const upOps = upInfo ? extractOps(upInfo.body, upInfo.lineOffset) : [];
+        const downOps = downInfo ? extractOps(downInfo.body, downInfo.lineOffset) : [];
+        const tables = new Set();
+        for (const op of [...upOps, ...downOps]) {
+            if (op.table)
+                tables.add(op.table);
+        }
+        for (const t of tables) {
+            if (!byTable.has(t))
+                byTable.set(t, new Set());
+            byTable.get(t).add(cls.file);
+        }
+        const findings = auditMigration({
+            file: cls.file,
+            content,
+            upOps,
+            downOps,
+            hasSafeDown: !!downInfo,
+            ruleFilter,
+        });
+        migrations.push({
+            file: cls.file,
+            class_name: cls.name,
+            up_ops: upOps,
+            down_ops: downOps,
+            is_safe_transactional: isSafeTransactional,
+            tables: [...tables].sort(),
+            findings,
+        });
+    }
+    // Stable order: chronological by filename (timestamps sort lex-correctly
+    // in Yii2 since `m\d{6}_\d{6}_` always pads zeros).
+    migrations.sort((a, b) => a.file.localeCompare(b.file));
+    // Aggregate counts.
+    const findingsSummary = {};
+    for (const m of migrations) {
+        for (const f of m.findings) {
+            findingsSummary[f.rule_id] = (findingsSummary[f.rule_id] ?? 0) + 1;
+        }
+    }
+    const byTableObj = {};
+    for (const [t, files] of byTable.entries()) {
+        byTableObj[t] = [...files].sort();
+    }
+    return {
+        repo,
+        scanned_files: migrationClasses.length,
+        total_migrations: migrations.length,
+        migrations,
+        by_table: byTableObj,
+        findings_summary: findingsSummary,
+    };
+}
+// ---------------------------------------------------------------------------
+// Helpers
+// ---------------------------------------------------------------------------
+/**
+ * Find a method body within a class source by name pattern. Returns the
+ * body text (between the `{` after the method header and its matching
+ * `}`) plus the 1-based line of the body's opening brace, so per-op line
+ * numbers can be computed against the original file.
+ *
+ * Brace balancing uses a simple counter that ignores braces inside
+ * single/double-quoted strings, comments, and heredocs (the last is a
+ * best-effort skip — heredocs are rare in migrations).
+ */
+function findMethodBody(source, nameRe) {
+    // Build a bounded regex for "function NAME(...)"
+    const headerRe = new RegExp(`\\bfunction\\s+(${nameRe.source})\\s*\\(`, "g");
+    const headerMatch = headerRe.exec(source);
+    if (!headerMatch)
+        return null;
+    // Walk to the next `{` after the header.
+    const braceStart = source.indexOf("{", headerRe.lastIndex);
+    if (braceStart === -1)
+        return null;
+    // Balanced match.
+    let depth = 1;
+    let i = braceStart + 1;
+    while (i < source.length && depth > 0) {
+        const c = source[i];
+        if (c === "/" && source[i + 1] === "/") {
+            const nl = source.indexOf("\n", i);
+            i = nl === -1 ? source.length : nl + 1;
+            continue;
+        }
+        if (c === "/" && source[i + 1] === "*") {
+            const end = source.indexOf("*/", i + 2);
+            i = end === -1 ? source.length : end + 2;
+            continue;
+        }
+        if (c === '"' || c === "'") {
+            const quote = c;
+            i++;
+            while (i < source.length) {
+                if (source[i] === "\\") {
+                    i += 2;
+                    continue;
+                }
+                if (source[i] === quote) {
+                    i++;
+                    break;
+                }
+                i++;
+            }
+            continue;
+        }
+        if (c === "{")
+            depth++;
+        else if (c === "}")
+            depth--;
+        i++;
+    }
+    const body = source.slice(braceStart + 1, i - 1);
+    // 1-based line of the body's opening brace
+    const lineOffset = source.slice(0, braceStart).split("\n").length;
+    return { body, lineOffset };
+}
+/**
+ * Strip PHP comments (// line, # line, /* … *\/ block) from a source string,
+ * preserving line breaks so byte-for-byte line numbers stay aligned with the
+ * original. Used by alter-without-online-ddl detection so that developer
+ * notes mentioning the hint don't silence the finding.
+ *
+ * Doesn't try to handle string literals — comments inside strings are rare
+ * in migrations and the false-negative impact is minimal.
+ */
+function stripPhpComments(source) {
+    let out = "";
+    let i = 0;
+    while (i < source.length) {
+        const c = source[i];
+        if (c === "/" && source[i + 1] === "/") {
+            const nl = source.indexOf("\n", i);
+            if (nl === -1) {
+                i = source.length;
+            }
+            else {
+                i = nl;
+            }
+            continue;
+        }
+        if (c === "/" && source[i + 1] === "*") {
+            const end = source.indexOf("*/", i + 2);
+            if (end === -1) {
+                i = source.length;
+            }
+            else {
+                // Preserve newlines inside the block so subsequent line numbers
+                // stay correct against the original source.
+                const block = source.slice(i, end + 2);
+                for (const ch of block)
+                    if (ch === "\n")
+                        out += "\n";
+                i = end + 2;
+            }
+            continue;
+        }
+        if (c === "#") {
+            const nl = source.indexOf("\n", i);
+            if (nl === -1) {
+                i = source.length;
+            }
+            else {
+                i = nl;
+            }
+            continue;
+        }
+        out += c;
+        i++;
+    }
+    return out;
+}
+function extractOps(body, baseLine) {
+    const ops = [];
+    for (const matcher of OP_MATCHERS) {
+        matcher.re.lastIndex = 0;
+        let m;
+        while ((m = matcher.re.exec(body)) !== null) {
+            const lineInBody = body.slice(0, m.index).split("\n").length - 1;
+            ops.push(matcher.build(m, baseLine + lineInBody));
+        }
+    }
+    // Sort by line so callers see operations in source order.
+    ops.sort((a, b) => a.line - b.line);
+    return ops;
+}
+function auditMigration(ctx) {
+    const out = [];
+    const include = (id) => !ctx.ruleFilter || ctx.ruleFilter.has(id);
+    // missing-safe-down: any up-side op exists but down is empty
+    if (include("missing-safe-down") && ctx.upOps.length > 0 && ctx.downOps.length === 0) {
+        out.push({
+            rule_id: "missing-safe-down",
+            severity: "medium",
+            description: "Migration has up()/safeUp() operations but no down()/safeDown() — irreversible deploys",
+            fix: "Implement safeDown() that reverses the up operations (or throw a clear exception explicitly).",
+        });
+    }
+    // alter-without-online-ddl: alter/drop column on tables without an
+    // accompanying ALGORITHM=INPLACE/LOCK=NONE hint anywhere in the migration.
+    // We require the user to have written a raw `execute()` with the hint OR
+    // a comment containing "ALGORITHM=INPLACE" — anything else flags. This
+    // is the highest-volume tgm-panel db-audit finding (DB6-001).
+    if (include("alter-without-online-ddl")) {
+        const destructive = [...ctx.upOps, ...ctx.downOps].filter((o) => o.kind === "alter_column" || o.kind === "drop_column" || o.kind === "drop_table");
+        if (destructive.length > 0) {
+            // Look for the hint only in code, not comments. A developer note like
+            // "TODO: add ALGORITHM=INPLACE" should NOT silence this finding —
+            // the hint must actually be in the migration's executed SQL.
+            const codeOnly = stripPhpComments(ctx.content);
+            const hasOnlineDdl = /ALGORITHM\s*=\s*INPLACE/i.test(codeOnly) ||
+                /LOCK\s*=\s*NONE/i.test(codeOnly) ||
+                /pt-online-schema-change|gh-ost/i.test(codeOnly);
+            if (!hasOnlineDdl) {
+                out.push({
+                    rule_id: "alter-without-online-ddl",
+                    severity: "high",
+                    description: `Destructive operations (${destructive.map((d) => d.kind).join(", ")}) without explicit ALGORITHM=INPLACE/LOCK=NONE hint — risk of multi-minute lock on large tables under MySQL 8`,
+                    fix: "Either invoke the destructive ops via raw SQL with ALGORITHM=INPLACE, LOCK=NONE, or document a pt-online-schema-change / gh-ost runbook for large tables.",
+                });
+            }
+        }
+    }
+    // fk-without-index: addForeignKey on (table, column) where no createIndex
+    // on the same (table, column) appears earlier in this migration (or
+    // already exists in a previous one — out of scope for a single-file scan).
+    if (include("fk-without-index")) {
+        const fks = ctx.upOps.filter((o) => o.kind === "add_foreign_key");
+        for (const fk of fks) {
+            if (!fk.table || !fk.column)
+                continue;
+            const idxBefore = ctx.upOps.find((o) => o.kind === "create_index" &&
+                o.table === fk.table &&
+                o.line < fk.line);
+            if (!idxBefore) {
+                out.push({
+                    rule_id: "fk-without-index",
+                    severity: "medium",
+                    description: `addForeignKey on ${fk.table}.${fk.column} without createIndex on the same column earlier in this migration — slow FK lookups under load`,
+                    fix: `Add $this->createIndex('idx_${fk.table}_${fk.column}', '${fk.table}', '${fk.column}') before the addForeignKey call.`,
+                });
+            }
+        }
+    }
+    // raw-sql-without-comment: raw $this->execute() without any preceding
+    // // comment — these need explanation for reviewers. Bounded to first
+    // execute() per migration to avoid noise.
+    if (include("raw-sql-without-comment")) {
+        const execOp = ctx.upOps.find((o) => o.kind === "execute_raw_sql");
+        if (execOp) {
+            // Heuristic: the line BEFORE the execute() call should be a comment.
+            const lines = ctx.content.split("\n");
+            const before = lines[execOp.line - 2] ?? "";
+            if (!/^\s*(\/\/|#|\/\*)/.test(before)) {
+                out.push({
+                    rule_id: "raw-sql-without-comment",
+                    severity: "low",
+                    description: "Raw $this->execute() SQL with no preceding comment — review effort goes up sharply when raw SQL appears unexplained",
+                    fix: "Add a // comment above the execute() line explaining why the DSL wasn't sufficient.",
+                });
+            }
+        }
+    }
+    return out;
+}
+//# sourceMappingURL=yii-migrations-tools.js.map

package/dist/tools/yii-migrations-tools.js.map

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package/dist/tools/yii-modules-tools.d.ts

@@ -0,0 +1,63 @@
+/**
+ * Yii2 module inventory (N1).
+ *
+ * Scans a Yii2 codebase for classes extending `yii\\base\\Module` and emits
+ * a structured per-module summary: controller namespace, controllers, views,
+ * migrations path, components, sub-modules. Also resolves URL prefixes by
+ * cross-referencing config/web.php urlManager rules + the application's
+ * `modules` registration.
+ *
+ * Why this is its own tool (vs. squeezing into php_project_audit):
+ *   - Modules are the primary architectural unit of medium/large Yii2 apps
+ *     (tgm-panel: 11 modules; Mobi 2: similar). Routing, RBAC, and god-model
+ *     analysis all benefit from being able to scope to a module.
+ *   - The output is a graph of cross-file references (controllers ↔ views ↔
+ *     migrations ↔ config), not a flat findings list.
+ *
+ * Implementation depends on the v2.0.0 PHP extractor — uses `s.extends`
+ * (introduced in Sprint 1) to detect Module subclasses structurally.
+ * Falls back to a regex check on `s.source` when `extends` is absent so
+ * stale indexes don't go silent.
+ */
+import { relative } from "node:path";
+export interface YiiControllerRef {
+    class: string;
+    file: string;
+    /** Action methods discovered as children — names retain the `action` prefix
+     *  so callers can map them back to URL action ids without ambiguity. */
+    actions: string[];
+}
+export interface YiiModuleSummary {
+    /** Module id derived from the directory name containing Module.php. */
+    id: string;
+    /** Fully-qualified class name (e.g. app\\modules\\review\\Module). */
+    class: string;
+    /** Path to the Module.php file. */
+    file: string;
+    /** Value of `controllerNamespace` property if declared, else null. */
+    controllerNamespace: string | null;
+    /** Path containing the module's controllers, derived from the Module.php
+     *  location. */
+    controllers_path: string;
+    controllers: YiiControllerRef[];
+    /** Per-module views directory. */
+    views_path: string;
+    views_count: number;
+    /** Module's own migrations directory if present (e.g. modules/<id>/migrations/). */
+    migrations_path: string | null;
+    migrations_count: number;
+    /** Sub-module ids (modules nested under this module's modules() method). */
+    submodules: string[];
+    /** URL prefixes from main app config that route into this module. */
+    url_prefixes: string[];
+}
+export interface YiiModulesAudit {
+    repo: string;
+    total_modules: number;
+    modules: YiiModuleSummary[];
+}
+export declare function analyzeYiiModules(repo: string, options?: {
+    module_id?: string;
+}): Promise<YiiModulesAudit>;
+export { relative as _relativePathForTests };
+//# sourceMappingURL=yii-modules-tools.d.ts.map

package/dist/tools/yii-modules-tools.d.ts.map

@@ -0,0 +1 @@
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