codesift-mcp 0.5.6 → 0.5.8

package/dist/tools/wiki-page-generators.js

@@ -0,0 +1,129 @@
+import { escMd } from "./wiki-escape.js";
+const MAX_FILES_DISPLAY = 15;
+const SUMMARY_CHAR_BUDGET = 1600; // ~400 tokens at 4 chars/token
+export function generateCommunityPage(data) {
+    const { community, cohesion, internal_edges, external_edges, hotspots, hub_symbols } = data;
+    const lines = [];
+    lines.push(`# ${escMd(community.name)}`);
+    lines.push("");
+    lines.push(`**Cohesion:** ${(cohesion * 100).toFixed(0)}%  |  ` +
+        `**Internal edges:** ${internal_edges}  |  ` +
+        `**External edges:** ${external_edges}  |  ` +
+        `**Files:** ${community.size}`);
+    lines.push("", "## Files", "");
+    const displayFiles = community.files.slice(0, MAX_FILES_DISPLAY);
+    for (const f of displayFiles)
+        lines.push(`- ${escMd(f)}`);
+    if (community.files.length > MAX_FILES_DISPLAY) {
+        const extra = community.files.length - MAX_FILES_DISPLAY;
+        lines.push(`- *+${extra} more files (use \`codesift wiki-generate --focus\` to see all)*`);
+    }
+    lines.push("");
+    if (hub_symbols.length > 0) {
+        lines.push("## Hub Symbols", "", "| Symbol | Role | Callers | Callees |", "| ------ | ---- | ------: | ------: |");
+        for (const h of hub_symbols) {
+            lines.push(`| ${escMd(h.name)} | ${escMd(h.role)} | ${h.callers} | ${h.callees} |`);
+        }
+        lines.push("");
+    }
+    if (hotspots.length > 0) {
+        lines.push("## Hotspots", "", "| File | Commits | Score |", "| ---- | ------: | ----: |");
+        for (const h of hotspots) {
+            lines.push(`| ${escMd(h.file)} | ${h.commits} | ${h.hotspot_score.toFixed(2)} |`);
+        }
+        lines.push("");
+    }
+    return lines.join("\n");
+}
+export function generateCommunitySummary(data) {
+    const { community, cohesion, hub_symbols } = data;
+    const lines = [
+        `**${escMd(community.name)}**`,
+        `Cohesion: ${(cohesion * 100).toFixed(0)}% | Files: ${community.size}`,
+    ];
+    const topFiles = community.files.slice(0, 3);
+    if (topFiles.length > 0)
+        lines.push(`Top files: ${topFiles.map(escMd).join(", ")}`);
+    const topHub = hub_symbols[0];
+    if (topHub !== undefined)
+        lines.push(`Top hub: ${escMd(topHub.name)} (${topHub.callers} callers)`);
+    const result = lines.join("\n");
+    return result.length <= SUMMARY_CHAR_BUDGET ? result : result.slice(0, SUMMARY_CHAR_BUDGET);
+}
+export function generateHubsPage(hubs) {
+    const lines = [
+        "# Hub Symbols", "",
+        "High-centrality symbols that act as architectural connectors.", "",
+    ];
+    if (hubs.length === 0) {
+        lines.push("No hub symbols detected.");
+    }
+    else {
+        lines.push("| Symbol | File | Role | Callers | Callees |", "| ------ | ---- | ---- | ------: | ------: |");
+        for (const h of hubs) {
+            lines.push(`| ${escMd(h.name)} | ${escMd(h.file)} | ${escMd(h.role)} | ${h.callers} | ${h.callees} |`);
+        }
+    }
+    lines.push("");
+    return lines.join("\n");
+}
+export function generateSurprisePage(surprises) {
+    const lines = [
+        "# Surprise Connections", "",
+        "Cross-community boundaries with higher coupling than expected (structural + temporal).", "",
+    ];
+    if (surprises.length === 0) {
+        lines.push("No surprise connections detected.");
+    }
+    else {
+        lines.push("| Community A | Community B | Score | Edges | Example Files |", "| ----------- | ----------- | ----: | ----: | ------------- |");
+        for (const s of surprises) {
+            const ex = `${escMd(s.example_files[0])} ↔ ${escMd(s.example_files[1])}`;
+            lines.push(`| ${escMd(s.community_a)} | ${escMd(s.community_b)} | ${s.combined_score.toFixed(2)} | ${s.edge_count} | ${ex} |`);
+        }
+    }
+    lines.push("");
+    return lines.join("\n");
+}
+export function generateHotspotsPage(hotspots) {
+    const lines = [
+        "# Hotspot Files", "",
+        "Files ranked by churn × complexity (commit frequency × size).", "",
+    ];
+    if (hotspots.length === 0) {
+        lines.push("No hotspot data available.");
+    }
+    else {
+        lines.push("| File | Commits | Score |", "| ---- | ------: | ----: |");
+        for (const h of hotspots) {
+            lines.push(`| ${escMd(h.file)} | ${h.commits} | ${h.hotspot_score.toFixed(2)} |`);
+        }
+    }
+    lines.push("");
+    return lines.join("\n");
+}
+export function generateFrameworkPage(framework) {
+    if (framework === null)
+        return "";
+    return [`# Framework: ${escMd(framework.name)}`, "", escMd(framework.details), ""].join("\n");
+}
+export function generateIndexPage(pages) {
+    const lines = [
+        "# Wiki Index", "",
+        "Auto-generated codebase wiki. Use the links below to navigate.", "",
+    ];
+    const byType = new Map();
+    for (const page of pages) {
+        const group = byType.get(page.type) ?? [];
+        group.push(page);
+        byType.set(page.type, group);
+    }
+    for (const [type, group] of byType) {
+        lines.push(`## ${escMd(type)}`, "");
+        for (const page of group)
+            lines.push(`- [[${page.slug}]] — ${escMd(page.title)}`);
+        lines.push("");
+    }
+    return lines.join("\n");
+}
+//# sourceMappingURL=wiki-page-generators.js.map

package/dist/tools/wiki-page-generators.js.map

@@ -0,0 +1 @@
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package/dist/tools/wiki-surprise.d.ts

@@ -0,0 +1,31 @@
+export interface SurpriseScore {
+    community_a: string;
+    community_b: string;
+    structural_score: number;
+    temporal_score: number;
+    combined_score: number;
+    edge_count: number;
+    example_files: [string, string];
+}
+export interface CrossEdge {
+    from_community: string;
+    to_community: string;
+    from_file: string;
+    to_file: string;
+}
+export interface CoChangePair {
+    file_a: string;
+    file_b: string;
+    jaccard: number;
+}
+export interface CommunityInfo {
+    name: string;
+    files: string[];
+    size: number;
+}
+/**
+ * Pure function — computes surprise scores for cross-community boundaries.
+ * No async, no MCP infrastructure imports.
+ */
+export declare function computeSurpriseScores(communities: CommunityInfo[], crossEdges: CrossEdge[], coChangePairs: CoChangePair[], globalDensity: number): SurpriseScore[];
+//# sourceMappingURL=wiki-surprise.d.ts.map

package/dist/tools/wiki-surprise.d.ts.map

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package/dist/tools/wiki-surprise.js

@@ -0,0 +1,77 @@
+/**
+ * Pure function — computes surprise scores for cross-community boundaries.
+ * No async, no MCP infrastructure imports.
+ */
+export function computeSurpriseScores(communities, crossEdges, coChangePairs, globalDensity) {
+    if (communities.length === 0)
+        return [];
+    // Build a lookup: community name → file set
+    const communityFiles = new Map();
+    const communitySize = new Map();
+    for (const c of communities) {
+        communityFiles.set(c.name, new Set(c.files));
+        communitySize.set(c.name, c.size);
+    }
+    // Canonical pair key: always sort so (A,B) === (B,A)
+    function pairKey(a, b) {
+        return a < b ? `${a}\0${b}` : `${b}\0${a}`;
+    }
+    const groups = new Map();
+    for (const edge of crossEdges) {
+        const ca = edge.from_community;
+        const cb = edge.to_community;
+        if (ca === cb)
+            continue;
+        const key = pairKey(ca, cb);
+        if (!groups.has(key)) {
+            const [a, b] = ca < cb ? [ca, cb] : [cb, ca];
+            groups.set(key, { community_a: a, community_b: b, edges: [] });
+        }
+        groups.get(key).edges.push(edge);
+    }
+    const results = [];
+    for (const [, group] of groups) {
+        const { community_a, community_b, edges } = group;
+        const sizeA = communitySize.get(community_a) ?? 0;
+        const sizeB = communitySize.get(community_b) ?? 0;
+        const filesA = communityFiles.get(community_a) ?? new Set();
+        const filesB = communityFiles.get(community_b) ?? new Set();
+        const edgeCount = edges.length;
+        const expected = sizeA * sizeB * globalDensity;
+        const structuralScore = expected === 0 ? 0 : edgeCount / expected;
+        // Find co-change pairs crossing this boundary
+        let temporalScore = 0;
+        let bestPair = null;
+        for (const pair of coChangePairs) {
+            const aInA = filesA.has(pair.file_a);
+            const bInB = filesB.has(pair.file_b);
+            const aInB = filesB.has(pair.file_a);
+            const bInA = filesA.has(pair.file_b);
+            const crossesBoundary = (aInA && bInB) || (aInB && bInA);
+            if (crossesBoundary && pair.jaccard > temporalScore) {
+                temporalScore = pair.jaccard;
+                bestPair = (aInA && bInB)
+                    ? [pair.file_a, pair.file_b]
+                    : [pair.file_b, pair.file_a];
+            }
+        }
+        // Fall back to first cross edge if no co-change data
+        const exampleFiles = bestPair !== null
+            ? bestPair
+            : [edges[0].from_file, edges[0].to_file];
+        const combinedScore = 0.6 * structuralScore + 0.4 * temporalScore;
+        results.push({
+            community_a,
+            community_b,
+            structural_score: structuralScore,
+            temporal_score: temporalScore,
+            combined_score: combinedScore,
+            edge_count: edgeCount,
+            example_files: exampleFiles,
+        });
+    }
+    // Sort by combined_score descending
+    results.sort((a, b) => b.combined_score - a.combined_score);
+    return results;
+}
+//# sourceMappingURL=wiki-surprise.js.map

package/dist/tools/wiki-surprise.js.map

@@ -0,0 +1 @@
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package/dist/tools/wiki-tools.d.ts

@@ -0,0 +1,14 @@
+export interface WikiResult {
+    wiki_dir: string;
+    pages: number;
+    communities: number;
+    hubs: number;
+    surprises: number;
+    degraded: boolean;
+    degraded_reasons?: string[];
+}
+export declare function generateWiki(repo: string, options?: {
+    focus?: string;
+    output_dir?: string;
+}): Promise<WikiResult>;
+//# sourceMappingURL=wiki-tools.d.ts.map

package/dist/tools/wiki-tools.d.ts.map

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package/dist/tools/wiki-tools.js

@@ -0,0 +1,245 @@
+import { writeFile, mkdir, readFile, readdir, rename, unlink } from "node:fs/promises";
+import { join, resolve } from "node:path";
+import { getCodeIndex } from "./index-tools.js";
+import { detectCommunities } from "./community-tools.js";
+import { classifySymbolRoles } from "./graph-tools.js";
+import { coChangeAnalysis, fanInFanOut } from "./coupling-tools.js";
+import { analyzeHotspots } from "./hotspot-tools.js";
+import { analyzeProject } from "./project-tools.js";
+import { computeIndexHash } from "../storage/graph-store.js";
+import { computeSurpriseScores, } from "./wiki-surprise.js";
+import { generateCommunityPage, generateCommunitySummary, generateHubsPage, generateSurprisePage, generateHotspotsPage, generateFrameworkPage, generateIndexPage, } from "./wiki-page-generators.js";
+import { resolveWikiLinks } from "./wiki-links.js";
+import { buildWikiManifest, toSlug } from "./wiki-manifest.js";
+const TIMEOUT_SENTINEL = { status: "timeout" };
+function withTimeout(promise, ms) {
+    return Promise.race([
+        promise,
+        new Promise((resolve) => setTimeout(() => resolve(TIMEOUT_SENTINEL), ms)),
+    ]);
+}
+function isTimeout(v) {
+    return typeof v === "object" && v !== null && "status" in v && v.status === "timeout";
+}
+const ANALYSIS_TIMEOUT = 15000;
+// ---------------------------------------------------------------------------
+// Helpers: settled-result unwrapping
+// ---------------------------------------------------------------------------
+function formatDegradedReason(label, result) {
+    if (result.status === "rejected") {
+        return `${label}_error: ${result.reason instanceof Error ? result.reason.message : String(result.reason)}`;
+    }
+    return `${label}_timeout`;
+}
+function unwrapSettled(result, label, extractor, fallback, degradedReasons) {
+    if (result.status === "fulfilled" && !isTimeout(result.value)) {
+        return extractor(result.value);
+    }
+    degradedReasons.push(formatDegradedReason(label, result));
+    return fallback;
+}
+// ---------------------------------------------------------------------------
+// Helper: load old manifest if present
+// ---------------------------------------------------------------------------
+async function loadOldManifest(outputDir) {
+    try {
+        const raw = await readFile(join(outputDir, "manifest.json"), "utf-8");
+        return JSON.parse(raw);
+    }
+    catch {
+        return undefined;
+    }
+}
+// ---------------------------------------------------------------------------
+// Main orchestrator
+// ---------------------------------------------------------------------------
+export async function generateWiki(repo, options) {
+    const index = await getCodeIndex(repo);
+    if (!index)
+        throw new Error(`Repository "${repo}" not found.`);
+    const outputDir = options?.output_dir ?? join(index.root, ".codesift", "wiki");
+    // Path traversal guard
+    if (options?.output_dir) {
+        const resolved = resolve(options.output_dir);
+        const root = resolve(index.root);
+        if (!resolved.startsWith(root + "/") && resolved !== root) {
+            throw new Error(`output_dir "${options.output_dir}" is outside the repository root — path traversal not allowed`);
+        }
+    }
+    await mkdir(outputDir, { recursive: true });
+    // Lockfile: prevent concurrent wiki generation
+    const lockPath = join(outputDir, ".wiki-lock");
+    try {
+        await writeFile(lockPath, `${process.pid}\n${new Date().toISOString()}`, { flag: "wx" });
+    }
+    catch {
+        throw new Error("Wiki generation already in progress (lockfile exists)");
+    }
+    try {
+        // Fan out all analyses in parallel with per-analysis timeout
+        const [commResult, rolesResult, fanResult, coChangeResult, hotspotsResult] = await Promise.allSettled([
+            withTimeout(detectCommunities(repo, options?.focus), ANALYSIS_TIMEOUT),
+            withTimeout(classifySymbolRoles(repo, {}), ANALYSIS_TIMEOUT),
+            withTimeout(fanInFanOut(repo, {}), ANALYSIS_TIMEOUT),
+            withTimeout(coChangeAnalysis(repo, {}), ANALYSIS_TIMEOUT),
+            withTimeout(analyzeHotspots(repo, {}), ANALYSIS_TIMEOUT),
+        ]);
+        // analyzeProject is best-effort only (used for framework detection)
+        const [projectResult] = await Promise.allSettled([
+            withTimeout(analyzeProject(repo), ANALYSIS_TIMEOUT),
+        ]);
+        const degradedReasons = [];
+        const communities = unwrapSettled(commResult, "community_detection", (cr) => {
+            if ("communities" in cr) {
+                return cr.communities.map((c) => ({ name: c.name, files: c.files, size: c.files.length }));
+            }
+            return [];
+        }, [], degradedReasons);
+        const crossEdges = [];
+        const hubSymbols = unwrapSettled(rolesResult, "classify_roles", (roles) => roles
+            .filter((r) => r.role === "core" || r.role === "utility" || r.callers >= 3)
+            .slice(0, 30)
+            .map((r) => ({ name: r.name, file: r.file, role: r.role, callers: r.callers, callees: r.callees })), [], degradedReasons);
+        const coChangePairs = unwrapSettled(coChangeResult, "cochange", (v) => v.pairs.map((p) => ({ file_a: p.file_a, file_b: p.file_b, jaccard: p.jaccard })), [], degradedReasons);
+        // Fan-in/fan-out: only record degraded reason, no data extracted
+        unwrapSettled(fanResult, "fanin", () => null, null, degradedReasons);
+        const fileHotspots = unwrapSettled(hotspotsResult, "hotspots", (v) => v.hotspots.slice(0, 20).map((h) => ({ file: h.file, commits: h.commits, hotspot_score: h.hotspot_score })), [], degradedReasons);
+        const frameworkInfo = unwrapSettled(projectResult, "project", (v) => {
+            const fw = v.stack?.framework;
+            return fw ? { name: fw, details: `Primary framework detected: ${fw}.` } : null;
+        }, null, degradedReasons);
+        // Compute surprise scores
+        const globalDensity = index.files.length > 0 ? crossEdges.length / (index.files.length * index.files.length) : 0;
+        const surprises = computeSurpriseScores(communities, crossEdges, coChangePairs, globalDensity);
+        // Build community page data
+        const communityPages = communities.map((comm) => {
+            const slug = toSlug(comm.name);
+            const commHotspots = fileHotspots.filter((h) => comm.files.includes(h.file));
+            const commHubs = hubSymbols.filter((h) => comm.files.includes(h.file));
+            const rawComm = commResult.status === "fulfilled" && !isTimeout(commResult.value) && "communities" in commResult.value
+                ? commResult.value.communities.find((c) => c.name === comm.name)
+                : undefined;
+            const data = {
+                community: comm,
+                cohesion: rawComm?.cohesion ?? 0,
+                internal_edges: rawComm?.internal_edges ?? 0,
+                external_edges: rawComm?.external_edges ?? 0,
+                hotspots: commHotspots,
+                hub_symbols: commHubs,
+            };
+            const content = generateCommunityPage(data);
+            return { slug, title: comm.name, type: "community", file: `${slug}.md`, content };
+        });
+        // Write community summary files for hook injection
+        for (const comm of communityPages) {
+            const data = communities.find((c) => toSlug(c.name) === comm.slug);
+            if (!data)
+                continue;
+            const commHotspots = fileHotspots.filter((h) => data.files.includes(h.file));
+            const commHubs = hubSymbols.filter((h) => data.files.includes(h.file));
+            const rawComm = commResult.status === "fulfilled" && !isTimeout(commResult.value) && "communities" in commResult.value
+                ? commResult.value.communities.find((c) => c.name === data.name)
+                : undefined;
+            const summaryData = {
+                community: data,
+                cohesion: rawComm?.cohesion ?? 0,
+                internal_edges: rawComm?.internal_edges ?? 0,
+                external_edges: rawComm?.external_edges ?? 0,
+                hotspots: commHotspots,
+                hub_symbols: commHubs,
+            };
+            const summary = generateCommunitySummary(summaryData);
+            await writeFile(join(outputDir, `${comm.slug}.summary.md`), summary, "utf-8");
+        }
+        // Hubs page
+        const hubsContent = generateHubsPage(hubSymbols);
+        const hubsPage = { slug: "hubs", title: "Hub Symbols", type: "hubs", file: "hubs.md", content: hubsContent };
+        // Surprises page
+        const surprisesContent = generateSurprisePage(surprises);
+        const surprisesPage = { slug: "surprises", title: "Surprise Connections", type: "surprises", file: "surprises.md", content: surprisesContent };
+        // Hotspots page
+        const hotspotsContent = generateHotspotsPage(fileHotspots);
+        const hotspotsPage = { slug: "hotspots", title: "Hotspot Files", type: "hotspots", file: "hotspots.md", content: hotspotsContent };
+        // Framework page (only if framework detected)
+        const frameworkPages = [];
+        if (frameworkInfo) {
+            const content = generateFrameworkPage(frameworkInfo);
+            if (content) {
+                frameworkPages.push({ slug: "framework", title: `Framework: ${frameworkInfo.name}`, type: "framework", file: "framework.md", content });
+            }
+        }
+        // Collect all content pages (excluding index) for index generation
+        const contentPages = [
+            ...communityPages,
+            hubsPage,
+            surprisesPage,
+            hotspotsPage,
+            ...frameworkPages,
+        ];
+        // Index page
+        const indexContent = generateIndexPage(contentPages.map((p) => ({ slug: p.slug, title: p.title, type: p.type })));
+        const indexPage = { slug: "index", title: "Wiki Index", type: "index", file: "index.md", content: indexContent };
+        const allPages = [indexPage, ...contentPages];
+        // Resolve wiki links (two-pass backlink injection)
+        const pageMap = new Map(allPages.map((p) => [p.slug, p.content]));
+        const knownSlugs = new Set(allPages.map((p) => p.slug));
+        const { resolvedPages } = resolveWikiLinks(pageMap, knownSlugs);
+        // Update PageInfo content with resolved versions
+        const resolvedPageInfos = allPages.map((p) => ({
+            ...p,
+            content: resolvedPages.get(p.slug) ?? p.content,
+        }));
+        // Load old manifest for slug_redirects preservation
+        const oldManifest = await loadOldManifest(outputDir);
+        // Build manifest
+        const indexHash = computeIndexHash(index.files);
+        const manifestOptions = {
+            index_hash: indexHash,
+            git_commit: "unknown",
+            pages: resolvedPageInfos,
+            communities,
+            degradedReasons,
+        };
+        if (oldManifest !== undefined) {
+            manifestOptions.oldManifest = oldManifest;
+        }
+        const manifest = buildWikiManifest(manifestOptions);
+        // Write pages
+        for (const page of resolvedPageInfos) {
+            await writeFile(join(outputDir, page.file), page.content, "utf-8");
+        }
+        // Stale page cleanup: delete .md files from a previous run that are no longer generated
+        const existingFiles = await readdir(outputDir);
+        const newFiles = new Set(resolvedPageInfos.map((p) => p.file));
+        newFiles.add("wiki-manifest.json");
+        newFiles.add("wiki-manifest.json.tmp");
+        newFiles.add(".wiki-lock");
+        // Add summary files to known set so they aren't cleaned up
+        for (const comm of communityPages) {
+            newFiles.add(`${comm.slug}.summary.md`);
+        }
+        for (const f of existingFiles) {
+            if (f.endsWith(".md") && !newFiles.has(f)) {
+                await unlink(join(outputDir, f));
+            }
+        }
+        // Atomic manifest write: write to .tmp then rename
+        const manifestPath = join(outputDir, "wiki-manifest.json");
+        const tmpPath = manifestPath + ".tmp";
+        await writeFile(tmpPath, JSON.stringify(manifest, null, 2));
+        await rename(tmpPath, manifestPath);
+        return {
+            wiki_dir: outputDir,
+            pages: resolvedPageInfos.length,
+            communities: communities.length,
+            hubs: hubSymbols.length,
+            surprises: surprises.length,
+            degraded: degradedReasons.length > 0,
+            ...(degradedReasons.length > 0 ? { degraded_reasons: degradedReasons } : {}),
+        };
+    }
+    finally {
+        await unlink(lockPath).catch(() => { });
+    }
+}
+//# sourceMappingURL=wiki-tools.js.map

package/dist/tools/wiki-tools.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "codesift-mcp",
-  "version": "0.5.6",
+  "version": "0.5.8",
   "description": "MCP server for code intelligence — 146 tools for symbol search, call graph, semantic search, route tracing, community detection, LSP bridge, secret detection, conversation search, and Hono framework intelligence",
   "license": "BSL-1.1",
   "author": "Greg Laskowski",