codesift-mcp 0.5.24 → 0.5.27

package/dist/retrieval/codebase-retrieval.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"codebase-retrieval.d.ts","sourceRoot":"","sources":["../../src/retrieval/codebase-retrieval.ts"],"names":[],"mappings":"AACA,OAAO,EAIL,KAAK,uBAAuB,EAC7B,MAAM,wBAAwB,CAAC;AAiBhC,OAAO,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtE,YAAY,EAAE,QAAQ,EAAE,cAAc,EAAE,uBAAuB,EAAE,MAAM,wBAAwB,CAAC;AA8HhG,wBAAsB,iBAAiB,CACrC,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,OAAO,EAAE,EAClB,WAAW,CAAC,EAAE,MAAM,GACnB,OAAO,CAAC,uBAAuB,CAAC,CAuElC"}
+{"version":3,"file":"codebase-retrieval.d.ts","sourceRoot":"","sources":["../../src/retrieval/codebase-retrieval.ts"],"names":[],"mappings":"AACA,OAAO,EAIL,KAAK,uBAAuB,EAC7B,MAAM,wBAAwB,CAAC;AAiBhC,OAAO,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtE,YAAY,EAAE,QAAQ,EAAE,cAAc,EAAE,uBAAuB,EAAE,MAAM,wBAAwB,CAAC;AA8HhG,wBAAsB,iBAAiB,CACrC,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,OAAO,EAAE,EAClB,WAAW,CAAC,EAAE,MAAM,GACnB,OAAO,CAAC,uBAAuB,CAAC,CAoFlC"}

package/dist/retrieval/codebase-retrieval.js

@@ -112,6 +112,11 @@ export async function codebaseRetrieval(repo, queries, tokenBudget) {
     // Execute sub-queries with bounded concurrency (max 3 parallel)
     // to balance speed vs memory (full parallel on 600+ files = OOM)
     const MAX_CONCURRENCY = 3;
+    // Per-sub-query timeout: telemetry showed codebase_retrieval p99=62s where
+    // a single slow semantic/embedding call stalled the entire batch. Bound
+    // each sub-query at 25s and surface a typed timeout error so siblings
+    // still complete.
+    const SUBQUERY_TIMEOUT_MS = 25_000;
     const subResults = new Array(limited.length);
     const tasks = limited.map((raw, idx) => async () => {
         const parsed = SubQuerySchema.safeParse(raw);
@@ -125,7 +130,10 @@ export async function codebaseRetrieval(repo, queries, tokenBudget) {
             return;
         }
         try {
-            subResults[idx] = await executeSubQuery(repo, parsed.data);
+            subResults[idx] = await Promise.race([
+                executeSubQuery(repo, parsed.data),
+                new Promise((_, reject) => setTimeout(() => reject(new Error(`sub-query timed out after ${SUBQUERY_TIMEOUT_MS}ms`)), SUBQUERY_TIMEOUT_MS)),
+            ]);
         }
         catch (err) {
             const message = err instanceof Error ? err.message : String(err);

package/dist/retrieval/codebase-retrieval.js.map

@@ -1 +1 @@
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package/dist/search/chunker.d.ts

@@ -1,4 +1,5 @@
 import type { CodeChunk } from "../types.js";
+export declare function shouldSkipChunking(file: string, content: string): boolean;
 /**
  * Split a file's content into overlapping text chunks suitable for embedding.
  *

package/dist/search/chunker.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"chunker.d.ts","sourceRoot":"","sources":["../../src/search/chunker.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAoC7C;;;;;GAKG;AACH,wBAAgB,SAAS,CACvB,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,GACX,SAAS,EAAE,CA2Cb;AAED;;;;GAIG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,GACrE,SAAS,EAAE,CAiDb"}
+{"version":3,"file":"chunker.d.ts","sourceRoot":"","sources":["../../src/search/chunker.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAsB7C,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAgBzE;AAMD;;;;;GAKG;AACH,wBAAgB,SAAS,CACvB,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,GACX,SAAS,EAAE,CA2Cb;AAED;;;;GAIG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,EACf,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,GACrE,SAAS,EAAE,CAiDb"}

package/dist/search/chunker.js

@@ -7,12 +7,19 @@ const CHARS_PER_TOKEN = 4; // intentionally high for chunk sizing (smaller chunk
 const CHUNK_CHARS = CHUNK_TOKENS * CHARS_PER_TOKEN; // 1600
 const OVERLAP_CHARS = OVERLAP_TOKENS * CHARS_PER_TOKEN; // 320
 const MAX_FILE_BYTES = 50_000; // skip files > 50KB
+const JOURNAL_MAX_FILE_BYTES = 60_000; // journal .md files index up to 60KB
 // Extensions that carry no semantic code value for embedding
 const SKIP_EXTENSIONS = new Set([
     ".json", ".lock", ".md", ".yaml", ".yml",
     ".env", ".txt", ".svg", ".png", ".wasm",
 ]);
-function shouldSkipChunking(file, content) {
+export function shouldSkipChunking(file, content) {
+    // Journal files under .codesift/wiki/journal/ are indexable .md content;
+    // bypass the SKIP_EXTENSIONS rule and use the larger journal ceiling.
+    // Match both absolute (/a/b/.codesift/wiki/journal/) and relative (.codesift/wiki/journal/) paths.
+    if (/(?:^|\/)\.codesift\/wiki\/journal\//.test(file)) {
+        return content.length > JOURNAL_MAX_FILE_BYTES;
+    }
     const dotIdx = file.lastIndexOf(".");
     const ext = dotIdx !== -1 ? file.slice(dotIdx) : "";
     if (SKIP_EXTENSIONS.has(ext))

package/dist/search/chunker.js.map

@@ -1 +1 @@
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package/dist/server-helpers.d.ts

@@ -1,3 +1,30 @@
+interface RegistryRepoMeta {
+    name: string;
+    root: string;
+    symbol_count: number;
+    file_count: number;
+}
+/** Read registry synchronously, cached by mtime to avoid disk hits in the hot path. */
+export declare function loadRegistrySync(registryPath?: string): RegistryRepoMeta[];
+/** True iff `descendant` is `ancestor` or sits underneath it on a path-segment boundary. */
+export declare function isAncestorOrEqual(ancestor: string, descendant: string): boolean;
+/**
+ * Resolve the repo name for a CWD by consulting the registry.
+ *
+ * Strategy:
+ *  1. Drop chat-history indexes (`~/.claude/projects/...`) — they shadow real
+ *     repos when the AI session's CWD matches them as a sibling/ancestor.
+ *  2. Drop empty entries (symbol_count=0) — they're stub registrations from
+ *     `index_folder` calls that found nothing or got auto-created on cd.
+ *  3. From remaining repos whose `root` is an ancestor of `cwd`, pick the
+ *     longest match. This handles monorepo subdirs and worktrees correctly:
+ *     cwd=/repo/apps/api with root=/repo registered → resolves to /repo's name.
+ *  4. If nothing matches, fall back to `local/<basename(cwd)>` so the tool
+ *     surfaces a clear NOT INDEXED error instead of silently using a stale value.
+ */
+export declare function resolveRepoFromCwd(cwd: string, registryPath?: string): string;
+/** Test-only: drop the registry cache. */
+export declare function _resetRegistryCacheForTests(): void;
 export interface ToolResponse {
     [key: string]: unknown;
     content: Array<{

package/dist/server-helpers.d.ts.map

@@ -1 +1 @@
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package/dist/server-helpers.js

@@ -1,18 +1,72 @@
 import { trackToolCall, addSavings, extractResultChunks } from "./storage/usage-tracker.js";
 import { recordToolCall as recordSessionCall, recordCacheHit, getCallCount, getSessionState, resetSession, scheduleSidecarFlush } from "./storage/session-state.js";
-import { writeFileSync, mkdirSync } from "node:fs";
-import { join, basename } from "node:path";
-import { tmpdir } from "node:os";
+import { writeFileSync, mkdirSync, readFileSync, statSync } from "node:fs";
+import { join, basename, sep } from "node:path";
+import { tmpdir, homedir } from "node:os";
 // ---------------------------------------------------------------------------
 // Auto-resolve repo from CWD — eliminates mandatory list_repos on session start
 // ---------------------------------------------------------------------------
-const DEFAULT_REPO = `local/${basename(process.cwd())}`;
 /** Tools that accept a `repo` param and should auto-resolve from CWD */
 const TOOLS_WITHOUT_REPO = new Set(["list_repos", "index_folder", "index_repo", "index_conversations", "discover_tools", "describe_tools", "search_conversations", "search_all_conversations", "get_session_snapshot", "get_session_context", "usage_stats", "test_tool"]);
-function resolveRepo(toolName, args) {
-    if (!TOOLS_WITHOUT_REPO.has(toolName) && !args["repo"]) {
-        args["repo"] = DEFAULT_REPO;
+const REGISTRY_PATH = join(homedir(), ".codesift", "registry.json");
+const CONVERSATIONS_PREFIX = join(homedir(), ".claude", "projects") + sep;
+let registryCache = null;
+/** Read registry synchronously, cached by mtime to avoid disk hits in the hot path. */
+export function loadRegistrySync(registryPath = REGISTRY_PATH) {
+    try {
+        const st = statSync(registryPath);
+        if (registryCache && registryCache.mtimeMs === st.mtimeMs) {
+            return registryCache.entries;
+        }
+        const parsed = JSON.parse(readFileSync(registryPath, "utf-8"));
+        const entries = Object.values(parsed.repos ?? {});
+        registryCache = { mtimeMs: st.mtimeMs, entries };
+        return entries;
+    }
+    catch {
+        return [];
+    }
+}
+/** True iff `descendant` is `ancestor` or sits underneath it on a path-segment boundary. */
+export function isAncestorOrEqual(ancestor, descendant) {
+    if (ancestor === descendant)
+        return true;
+    const a = ancestor.endsWith(sep) ? ancestor : ancestor + sep;
+    return descendant.startsWith(a);
+}
+/**
+ * Resolve the repo name for a CWD by consulting the registry.
+ *
+ * Strategy:
+ *  1. Drop chat-history indexes (`~/.claude/projects/...`) — they shadow real
+ *     repos when the AI session's CWD matches them as a sibling/ancestor.
+ *  2. Drop empty entries (symbol_count=0) — they're stub registrations from
+ *     `index_folder` calls that found nothing or got auto-created on cd.
+ *  3. From remaining repos whose `root` is an ancestor of `cwd`, pick the
+ *     longest match. This handles monorepo subdirs and worktrees correctly:
+ *     cwd=/repo/apps/api with root=/repo registered → resolves to /repo's name.
+ *  4. If nothing matches, fall back to `local/<basename(cwd)>` so the tool
+ *     surfaces a clear NOT INDEXED error instead of silently using a stale value.
+ */
+export function resolveRepoFromCwd(cwd, registryPath = REGISTRY_PATH) {
+    const candidates = loadRegistrySync(registryPath).filter((r) => typeof r.root === "string" &&
+        !r.root.startsWith(CONVERSATIONS_PREFIX) &&
+        r.symbol_count > 0 &&
+        isAncestorOrEqual(r.root, cwd));
+    if (candidates.length === 0) {
+        return `local/${basename(cwd)}`;
     }
+    candidates.sort((a, b) => b.root.length - a.root.length);
+    return candidates[0].name;
+}
+function resolveRepo(toolName, args) {
+    if (TOOLS_WITHOUT_REPO.has(toolName) || args["repo"])
+        return;
+    args["repo"] = resolveRepoFromCwd(process.cwd());
+}
+/** Test-only: drop the registry cache. */
+export function _resetRegistryCacheForTests() {
+    registryCache = null;
 }
 // ---------------------------------------------------------------------------
 // Constants
@@ -44,7 +98,11 @@ const SAVINGS_MULTIPLIER = {
 const OPUS_COST_PER_TOKEN = 30 / 1_000_000; // $30/1M input tokens
 const BATCHABLE_TOOLS = new Set(["search_text", "search_symbols", "find_references", "get_symbol"]);
 const SEQUENTIAL_HINT_THRESHOLD = 3;
-const CACHE_TTL_MS = 30_000; // 30s default for search results
+// TTLs: response cache is invalidated automatically on index_file/index_folder
+// (see INDEX_MUTATING_TOOLS), so it's safe to use longer windows than agents
+// would otherwise tolerate. Telemetry showed 853 consecutive identical calls
+// within 60s in same session — the previous 30s default missed half of them.
+const CACHE_TTL_MS = 60_000; // 60s default for search results
 const CACHE_TTL_STATIC_MS = 300_000; // 5min for static data (file tree, outline)
 const CACHE_TTL_SYMBOL_MS = 120_000; // 2min for symbol reads (stable unless re-indexed)
 const CACHE_MAX_SIZE = 200;
@@ -103,6 +161,21 @@ function setCache(key, text) {
     }
     responseCache.set(key, { text, ts: Date.now() });
 }
+/**
+ * Tool calls that mutate the index — must invalidate the response cache so
+ * the next search/symbol read sees fresh data (otherwise the 30s-5min TTL
+ * serves stale results for up to several minutes after an edit).
+ */
+const INDEX_MUTATING_TOOLS = new Set([
+    "index_file",
+    "index_folder",
+    "index_repo",
+    "invalidate_cache",
+]);
+/** Drop every cached response. Called after an indexing tool runs. */
+function invalidateResponseCache() {
+    responseCache.clear();
+}
 /** Track sequential calls + session-level state. Exported for testing. */
 export function trackSequentialCalls(toolName) {
     if (toolName === lastToolName && BATCHABLE_TOOLS.has(toolName)) {
@@ -326,7 +399,15 @@ export function wrapTool(toolName, args, fn) {
                 const ss = getSessionState();
                 if (getCallCount() >= 50 && !ss.h10Emitted)
                     ss.h10Emitted = true;
-                setCache(cacheKey, text);
+                // Invalidate response cache after index mutations so subsequent
+                // search/symbol reads see fresh data. Without this, the 30s-5min
+                // TTL would serve stale results after an edit.
+                if (INDEX_MUTATING_TOOLS.has(toolName)) {
+                    invalidateResponseCache();
+                }
+                else {
+                    setCache(cacheKey, text);
+                }
                 return formatResponse(text, toolName, args, data);
             }
             catch (err) {

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package/dist/server.js

@@ -21,6 +21,27 @@ cleanupOrphanSidecars();
 process.on("exit", () => {
     cleanupSidecar();
 });
+/**
+ * Last-line-of-defense crash guards. Tree-sitter parsing or symbol extraction
+ * can throw on pathological inputs; without these handlers a single bad file
+ * during index_folder kills the entire MCP server, which clients see as
+ * "Connection closed". We log the error and let the originating tool handler
+ * surface it normally, instead of taking down the whole process.
+ *
+ * These guards do NOT protect against native crashes inside web-tree-sitter
+ * WASM (segfaults bypass the JS error machinery). Those remain a known
+ * residual risk; mitigations are the per-file parse timeout in
+ * parser-manager.ts and the max_files cap in index-tools.ts, which together
+ * keep us out of the regions where WASM crashes have been observed.
+ */
+process.on("uncaughtException", (err) => {
+    console.error(`[codesift] uncaughtException (suppressed to keep MCP alive): ${err.message}\n${err.stack ?? ""}`);
+});
+process.on("unhandledRejection", (reason) => {
+    const message = reason instanceof Error ? reason.message : String(reason);
+    const stack = reason instanceof Error ? reason.stack : undefined;
+    console.error(`[codesift] unhandledRejection (suppressed to keep MCP alive): ${message}${stack ? "\n" + stack : ""}`);
+});
 loadConfig();
 const server = new McpServer({ name: "codesift-mcp", version: PKG_VERSION }, { instructions: CODESIFT_INSTRUCTIONS });
 registerTools(server, { deferNonCore: true });
@@ -50,7 +71,17 @@ async function autoEnableFrameworkToolsFromPackageJson(cwd) {
     }
 }
 async function main() {
+    const startTs = Date.now();
     const transport = new StdioServerTransport();
+    // Diagnostic transport hooks. Primary fix for "-32000: Connection closed" is
+    // event-loop yielding inside heavy tools (perf-tools, hotspot-tools, project-tools);
+    // these handlers leave a stderr trace if any residual transport drop occurs.
+    transport.onclose = () => {
+        console.error(`[codesift] transport closed at uptime=${Date.now() - startTs}ms`);
+    };
+    transport.onerror = (err) => {
+        console.error(`[codesift] transport error at uptime=${Date.now() - startTs}ms:`, err.message);
+    };
     const envPlatform = detectPlatform();
     let hooksInstalledFor = null;
     const installHooks = (platform, reason) => {

package/dist/server.js.map

@@ -1 +1 @@
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package/dist/storage/index-store.d.ts

@@ -15,12 +15,49 @@ export declare function saveIndex(indexPath: string, index: CodeIndex): Promise<
  * where version enforcement would cause spurious reindexes.
  */
 export declare function loadIndex(indexPath: string, currentVersions?: Record<string, string>): Promise<CodeIndex | null>;
+/** Discriminated union returned by loadIndexOrStale: distinguishes a healthy
+ *  load from a version-mismatch stale-index case. Tools route through this
+ *  helper instead of calling loadIndex directly so stale indexes surface as
+ *  structured errors via staleToMcpError (src/tools/_helpers.ts) rather than
+ *  silent empty results. */
+export type IndexOrStaleResult = {
+    status: "ok";
+    index: CodeIndex;
+} | {
+    status: "stale";
+    reason: "extractor_version_mismatch";
+    /** Language whose extractor version drifted (e.g., "typescript", "python"). */
+    language: string;
+    expected_version: string;
+    actual_version: string;
+};
+/** Load an index with version-aware stale detection.
+ *
+ * Returns:
+ *   - `{ status: "ok", index }` when the index is present, valid, and matches
+ *     the provided `currentVersions` for the language under inspection.
+ *   - `{ status: "stale", reason: "extractor_version_mismatch", ... }` when
+ *     the file exists and is parseable but its TypeScript extractor version
+ *     differs from the current bundled version.
+ *
+ * The stale payload names the actual mismatching language (typescript, python,
+ * php, etc.). Earlier versions hard-coded "typescript" in the message even
+ * when a different language drifted; that misled anyone reading the warning
+ * during a non-TS bump.
+ *
+ * On file-not-found, parse error, or invalid shape, this function falls back
+ * to `loadIndex(...)` returning null. Callers must still handle null (no
+ * structured error) for those cases. */
+export declare function loadIndexOrStale(indexPath: string, currentVersions: Record<string, string>): Promise<IndexOrStaleResult | null>;
 /**
  * Check whether the stored `extractor_version` snapshot matches the current
- * set of extractor versions. Returns false if any language present in
- * `currentVersions` is missing from the stored snapshot or has a different
- * value. A missing `extractor_version` field on a legacy index is treated as
- * a version miss.
+ * set of extractor versions. Returns false when any language present in BOTH
+ * `currentVersions` and `index.files` is missing from the stored snapshot or
+ * has a different value. Languages added to `currentVersions` after this index
+ * was written are tolerated when the index has no files in that language —
+ * matches the tolerance applied by `findExtractorVersionMismatch`. A missing
+ * `extractor_version` field on a fully legacy index is still treated as a
+ * version miss.
  */
 export declare function isExtractorVersionCurrent(index: CodeIndex, currentVersions: Record<string, string>): boolean;
 /**

package/dist/storage/index-store.d.ts.map

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+{"version":3,"file":"index-store.d.ts","sourceRoot":"","sources":["../../src/storage/index-store.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAMpE;;;GAGG;AACH,wBAAsB,SAAS,CAC7B,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,SAAS,GACf,OAAO,CAAC,IAAI,CAAC,CAGf;AAED;;;;;;;;;GASG;AACH,wBAAsB,SAAS,CAC7B,SAAS,EAAE,MAAM,EACjB,eAAe,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GACvC,OAAO,CAAC,SAAS,GAAG,IAAI,CAAC,CAiB3B;AAED;;;;4BAI4B;AAC5B,MAAM,MAAM,kBAAkB,GAC1B;IAAE,MAAM,EAAE,IAAI,CAAC;IAAC,KAAK,EAAE,SAAS,CAAA;CAAE,GAClC;IACE,MAAM,EAAE,OAAO,CAAC;IAChB,MAAM,EAAE,4BAA4B,CAAC;IACrC,+EAA+E;IAC/E,QAAQ,EAAE,MAAM,CAAC;IACjB,gBAAgB,EAAE,MAAM,CAAC;IACzB,cAAc,EAAE,MAAM,CAAC;CACxB,CAAC;AAsCN;;;;;;;;;;;;;;;;wCAgBwC;AACxC,wBAAsB,gBAAgB,CACpC,SAAS,EAAE,MAAM,EACjB,eAAe,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GACtC,OAAO,CAAC,kBAAkB,GAAG,IAAI,CAAC,CAmBpC;AAED;;;;;;;;;GASG;AACH,wBAAgB,yBAAyB,CACvC,KAAK,EAAE,SAAS,EAChB,eAAe,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GACtC,OAAO,CAYT;AAED;;;;GAIG;AACH,wBAAsB,eAAe,CACnC,SAAS,EAAE,MAAM,EACjB,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,UAAU,EAAE,EACxB,SAAS,CAAC,EAAE,SAAS,GACpB,OAAO,CAAC,IAAI,CAAC,CAgCf;AAED;;;GAGG;AACH,wBAAsB,mBAAmB,CACvC,SAAS,EAAE,MAAM,EACjB,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,IAAI,CAAC,CAsBf;AAED;;;GAGG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAOtE"}

package/dist/storage/index-store.js

@@ -38,20 +38,103 @@ export async function loadIndex(indexPath, currentVersions) {
         return null;
     }
 }
+/** Find the first language whose stored extractor_version does not match the
+ *  current bundled set. Returns null when every language matches. Used by
+ *  loadIndexOrStale so the stale payload names the actual mismatching language
+ *  instead of always reporting "typescript".
+ *
+ *  Languages absent from `stored` but ALSO absent from `index.files` are
+ *  tolerated — they were added to `EXTRACTOR_VERSIONS` after this index was
+ *  written, but the index has no symbols in that language, so its data is not
+ *  actually stale. Without this tolerance, every legacy index would be
+ *  rejected as soon as a new language is added to `EXTRACTOR_VERSIONS`,
+ *  producing a misleading "NOT INDEXED" signal until a manual reindex.
+ *
+ *  Languages present in `index.files` always require a matching version —
+ *  symbols extracted by an older extractor genuinely may be stale. */
+function findExtractorVersionMismatch(index, currentVersions) {
+    const stored = index.extractor_version ?? {};
+    const indexedLanguages = new Set();
+    for (const file of index.files)
+        indexedLanguages.add(file.language);
+    for (const lang of Object.keys(currentVersions)) {
+        const expected = currentVersions[lang];
+        const actual = stored[lang];
+        if (expected === actual)
+            continue;
+        if (actual === undefined && !indexedLanguages.has(lang))
+            continue;
+        return {
+            language: lang,
+            expected: expected ?? "unknown",
+            actual: actual ?? "missing",
+        };
+    }
+    return null;
+}
+/** Load an index with version-aware stale detection.
+ *
+ * Returns:
+ *   - `{ status: "ok", index }` when the index is present, valid, and matches
+ *     the provided `currentVersions` for the language under inspection.
+ *   - `{ status: "stale", reason: "extractor_version_mismatch", ... }` when
+ *     the file exists and is parseable but its TypeScript extractor version
+ *     differs from the current bundled version.
+ *
+ * The stale payload names the actual mismatching language (typescript, python,
+ * php, etc.). Earlier versions hard-coded "typescript" in the message even
+ * when a different language drifted; that misled anyone reading the warning
+ * during a non-TS bump.
+ *
+ * On file-not-found, parse error, or invalid shape, this function falls back
+ * to `loadIndex(...)` returning null. Callers must still handle null (no
+ * structured error) for those cases. */
+export async function loadIndexOrStale(indexPath, currentVersions) {
+    try {
+        const raw = await readFile(indexPath, "utf-8");
+        const parsed = JSON.parse(raw);
+        if (!isValidIndex(parsed))
+            return null;
+        const mismatch = findExtractorVersionMismatch(parsed, currentVersions);
+        if (mismatch) {
+            return {
+                status: "stale",
+                reason: "extractor_version_mismatch",
+                language: mismatch.language,
+                expected_version: mismatch.expected,
+                actual_version: mismatch.actual,
+            };
+        }
+        return { status: "ok", index: parsed };
+    }
+    catch {
+        return null;
+    }
+}
 /**
  * Check whether the stored `extractor_version` snapshot matches the current
- * set of extractor versions. Returns false if any language present in
- * `currentVersions` is missing from the stored snapshot or has a different
- * value. A missing `extractor_version` field on a legacy index is treated as
- * a version miss.
+ * set of extractor versions. Returns false when any language present in BOTH
+ * `currentVersions` and `index.files` is missing from the stored snapshot or
+ * has a different value. Languages added to `currentVersions` after this index
+ * was written are tolerated when the index has no files in that language —
+ * matches the tolerance applied by `findExtractorVersionMismatch`. A missing
+ * `extractor_version` field on a fully legacy index is still treated as a
+ * version miss.
  */
 export function isExtractorVersionCurrent(index, currentVersions) {
     const stored = index.extractor_version;
     if (!stored)
         return false;
+    const indexedLanguages = new Set();
+    for (const file of index.files)
+        indexedLanguages.add(file.language);
     for (const lang of Object.keys(currentVersions)) {
-        if (stored[lang] !== currentVersions[lang])
-            return false;
+        const actual = stored[lang];
+        if (actual === currentVersions[lang])
+            continue;
+        if (actual === undefined && !indexedLanguages.has(lang))
+            continue;
+        return false;
     }
     return true;
 }