codesift-mcp 0.17.0 → 0.19.2

package/dist/tools/conversation-cache.d.ts

@@ -1,6 +1,26 @@
-import type { BM25Index } from "../search/bm25.js";
-export declare function getConversationBM25Index(repoName: string): BM25Index | null;
-export declare function setConversationBM25Index(repoName: string, index: BM25Index): void;
+import { type BM25Index } from "../search/bm25.js";
+/**
+ * Newest index mtime this cache entry is known to cover, or 0 when unknown.
+ *
+ * Passed in by the caller because the cache does not know where a conversation repo's index lives;
+ * an entry built without one is never considered stale, which is the pre-existing behaviour and the
+ * conservative direction for a caller that cannot tell.
+ */
+export declare function getConversationBM25Index(repoName: string, freshAsOfMs?: number): BM25Index | null;
+/**
+ * Whether an entry exists at all, without touching recency or freshness.
+ *
+ * Lets the caller pay for a freshness read ONLY when there is something to invalidate. Asking
+ * unconditionally put a `loadIndexSummary` in front of every repo on the pass where all of them miss.
+ */
+export declare function hasConversationBM25Index(repoName: string): boolean;
+export declare function setConversationBM25Index(repoName: string, index: BM25Index, builtAtMs?: number): void;
+/** Entry count and priced bytes, for the cache report on /health. */
+export declare function conversationCacheStats(): {
+    bm25: number;
+    bm25_bytes: number;
+    embeddings: number;
+};
 export declare function loadConversationEmbeddingsCached(embeddingPath: string): Promise<Map<string, Float32Array>>;
 export declare function clearConversationEmbeddingsCacheForTesting(): void;
 //# sourceMappingURL=conversation-cache.d.ts.map

package/dist/tools/conversation-cache.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"conversation-cache.d.ts","sourceRoot":"","sources":["../../src/tools/conversation-cache.ts"],"names":[],"mappings":"AACA,OAAO,EAA4C,KAAK,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAqD7F;;;;;;GAMG;AACH,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,MAAM,EAAE,WAAW,SAAI,GAAG,SAAS,GAAG,IAAI,CAa5F;AAED;;;;;GAKG;AACH,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAElE;AAED,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,SAAS,SAAa,GAAG,IAAI,CAKzG;AA2CD,qEAAqE;AACrE,wBAAgB,sBAAsB,IAAI;IACxC,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB,CAIA;AAED,wBAAsB,gCAAgC,CACpD,aAAa,EAAE,MAAM,GACpB,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,CAwBpC;AAED,wBAAgB,0CAA0C,IAAI,IAAI,CAIjE"}

package/dist/tools/conversation-cache.js

@@ -1,11 +1,136 @@
 import { stat } from "node:fs/promises";
+import { bm25CacheBudgetBytes, bm25FootprintBytes } from "../search/bm25.js";
+/**
+ * BM25 indexes for conversation repos.
+ *
+ * This is the SECOND cache of BM25 indexes in the process, and it had none of what the first one
+ * got: no LRU, no budget, no entry cap, and — unlike its sibling — not even the accidental eviction
+ * that used to keep that one small. Nothing has ever removed an entry from it.
+ *
+ * Its size is not bounded by how many conversation indexes exist on disk either, because
+ * `loadConversationIndex` BUILDS the index from symbols rather than reading a persisted one: only 3
+ * of 1,258 conversation repos here have a `.bm25.ndjson` at all. What bounds it is how many repos get
+ * searched, and `searchAllConversations` searches every one of them in a single `Promise.all`.
+ *
+ * Measured 2026-09-27, one `search_all_conversations` call on this install:
+ *
+ *   projects_searched 1,258 · 53.7 s · heapUsed 5 MB -> 3,262 MB
+ *   RETAINED after an explicit GC: 2,784 MB
+ *   a second identical call: 0.6 s — proving all of it is still referenced
+ *
+ * The fan-out comment in `searchAllConversations` says "with ~20+ conversation repos". That was true
+ * when it was written. Pricing and budget come from `search/bm25.js` so this cache and the code one
+ * cannot drift apart on what an index costs.
+ */
 const bm25Indexes = new Map();
+/**
+ * Index freshness, so a long-lived process stops answering from a snapshot.
+ *
+ * The lookup was `if (!bm25) build`, with no revalidation anywhere — so the first search in a process
+ * fixed the answer for the life of that process. In the daemon, which had been up 27 hours when this
+ * was found, conversation search could not see a single conversation recorded since its first call.
+ * That is a correctness defect the memory bound would otherwise have hidden, since eviction also
+ * happens to refresh.
+ */
+const indexedAt = new Map();
 const embeddingsCache = new Map();
-export function getConversationBM25Index(repoName) {
-    return bm25Indexes.get(repoName) ?? null;
+/**
+ * How many conversation embedding maps stay resident.
+ *
+ * Each load is individually capped by `embeddingMemBudgetBytes()`, which bounds one entry and says
+ * nothing about their number — the same "count is not size" mistake ADR-004 fixed for the index
+ * cache, inverted. Conversation embeddings are small here (0.03 GB on disk across 1,258 repos), so a
+ * modest entry cap is enough; it exists so the failure mode is bounded rather than proportional to
+ * how many projects the machine has ever had.
+ */
+const MAX_EMBEDDING_ENTRIES = 64;
+/**
+ * Newest index mtime this cache entry is known to cover, or 0 when unknown.
+ *
+ * Passed in by the caller because the cache does not know where a conversation repo's index lives;
+ * an entry built without one is never considered stale, which is the pre-existing behaviour and the
+ * conservative direction for a caller that cannot tell.
+ */
+export function getConversationBM25Index(repoName, freshAsOfMs = 0) {
+    const index = bm25Indexes.get(repoName);
+    if (!index)
+        return null;
+    const builtAt = indexedAt.get(repoName) ?? 0;
+    if (freshAsOfMs > 0 && builtAt > 0 && freshAsOfMs > builtAt) {
+        bm25Indexes.delete(repoName);
+        indexedAt.delete(repoName);
+        return null;
+    }
+    // Re-insert so iteration order is least-recently-used first.
+    bm25Indexes.delete(repoName);
+    bm25Indexes.set(repoName, index);
+    return index;
+}
+/**
+ * Whether an entry exists at all, without touching recency or freshness.
+ *
+ * Lets the caller pay for a freshness read ONLY when there is something to invalidate. Asking
+ * unconditionally put a `loadIndexSummary` in front of every repo on the pass where all of them miss.
+ */
+export function hasConversationBM25Index(repoName) {
+    return bm25Indexes.has(repoName);
 }
-export function setConversationBM25Index(repoName, index) {
+export function setConversationBM25Index(repoName, index, builtAtMs = Date.now()) {
+    bm25Indexes.delete(repoName);
     bm25Indexes.set(repoName, index);
+    indexedAt.set(repoName, builtAtMs);
+    evictOverBudget(repoName);
+}
+/**
+ * Drop least-recently-used entries until the cache fits its budget.
+ *
+ * The repo being served is never evicted, even alone over budget: otherwise a single large
+ * conversation corpus would rebuild and discard its own index on every call.
+ */
+/**
+ * Share of the BM25 budget this cache may hold.
+ *
+ * A quarter, not the whole tier. Conversation search is a secondary retrieval path, and giving it the
+ * same budget as the code BM25 cache would put four full-tier budgets in one process (indexes, code
+ * BM25, embeddings, conversations) — 4 GB of deliberate residency on a machine this size, which is
+ * how a process with correct individual bounds still walks into its heap ceiling.
+ *
+ * It costs little: a conversation index here averages ~2.2 MB (2,784 MB across 1,258 repos), so a
+ * quarter-tier still holds around a hundred of them — the recently-active projects — and a miss costs
+ * a rebuild, never an error. `CODESIFT_MAX_CONVERSATION_BM25_CACHE_MB` overrides directly.
+ */
+function conversationBudgetBytes() {
+    const raw = process.env["CODESIFT_MAX_CONVERSATION_BM25_CACHE_MB"];
+    if (raw !== undefined) {
+        const parsed = Number.parseInt(raw, 10);
+        if (Number.isFinite(parsed) && parsed > 0)
+            return parsed * 1024 * 1024;
+    }
+    return Math.floor(bm25CacheBudgetBytes() / 4);
+}
+function evictOverBudget(pinned) {
+    const budget = conversationBudgetBytes();
+    let total = 0;
+    for (const index of bm25Indexes.values())
+        total += bm25FootprintBytes(index);
+    if (total <= budget)
+        return;
+    for (const [name, index] of bm25Indexes) {
+        if (total <= budget)
+            break;
+        if (name === pinned)
+            continue;
+        total -= bm25FootprintBytes(index);
+        bm25Indexes.delete(name);
+        indexedAt.delete(name);
+    }
+}
+/** Entry count and priced bytes, for the cache report on /health. */
+export function conversationCacheStats() {
+    let bytes = 0;
+    for (const index of bm25Indexes.values())
+        bytes += bm25FootprintBytes(index);
+    return { bm25: bm25Indexes.size, bm25_bytes: bytes, embeddings: embeddingsCache.size };
 }
 export async function loadConversationEmbeddingsCached(embeddingPath) {
     let mtimeMs = -1;
@@ -16,15 +141,27 @@ export async function loadConversationEmbeddingsCached(embeddingPath) {
         // Missing files load as an empty embedding map.
     }
     const cached = embeddingsCache.get(embeddingPath);
-    if (cached?.mtimeMs === mtimeMs)
+    if (cached?.mtimeMs === mtimeMs) {
+        embeddingsCache.delete(embeddingPath);
+        embeddingsCache.set(embeddingPath, cached);
         return cached.embeddings;
+    }
     const { loadEmbeddings } = await import("../storage/embedding-store.js");
     const { embeddingMemBudgetBytes } = await import("../config.js");
     const embeddings = await loadEmbeddings(embeddingPath, embeddingMemBudgetBytes());
+    embeddingsCache.delete(embeddingPath);
     embeddingsCache.set(embeddingPath, { mtimeMs, embeddings });
+    while (embeddingsCache.size > MAX_EMBEDDING_ENTRIES) {
+        const oldest = embeddingsCache.keys().next().value;
+        if (oldest === undefined)
+            break;
+        embeddingsCache.delete(oldest);
+    }
     return embeddings;
 }
 export function clearConversationEmbeddingsCacheForTesting() {
     embeddingsCache.clear();
+    bm25Indexes.clear();
+    indexedAt.clear();
 }
 //# sourceMappingURL=conversation-cache.js.map

package/dist/tools/conversation-cache.js.map

@@ -1 +1 @@
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package/dist/tools/conversation-index-tools.d.ts

@@ -9,6 +9,18 @@ export interface IndexConversationsResult {
     compacted_sessions: number;
     /** Wall-clock time for the entire operation (ms). */
     elapsed_ms: number;
+    /**
+     * True when nothing was re-read because every `.jsonl` matched its recorded mtime.
+     *
+     * Additive and optional so a caller that does not know about it still reads the counts. It exists
+     * because a skip cannot report `compacted_sessions` — that is not stored — and a silent 0 there
+     * would be indistinguishable from "scanned, found none".
+     */
+    /** True when only the changed sessions were re-extracted rather than the whole directory. */
+    incremental?: boolean;
+    /** How many sessions were re-extracted or dropped on an incremental pass. */
+    changed_sessions?: number;
+    unchanged?: boolean;
 }
 /**
  * Index all JSONL conversation session files found in `projectPath`.

package/dist/tools/conversation-index-tools.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"conversation-index-tools.d.ts","sourceRoot":"","sources":["../../src/tools/conversation-index-tools.ts"],"names":[],"mappings":"AA0BA,MAAM,WAAW,wBAAwB;IACvC,yDAAyD;IACzD,cAAc,EAAE,MAAM,CAAC;IACvB,mEAAmE;IACnE,aAAa,EAAE,MAAM,CAAC;IACtB,4DAA4D;IAC5D,qBAAqB,EAAE,MAAM,CAAC;IAC9B,6DAA6D;IAC7D,kBAAkB,EAAE,MAAM,CAAC;IAC3B,qDAAqD;IACrD,UAAU,EAAE,MAAM,CAAC;IACnB;;;;;;OAMG;IACH,6FAA6F;IAC7F,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,6EAA6E;IAC7E,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAGD;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,WAAW,CAAC,EAAE,MAAM,EACpB,OAAO,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAA;CAAE,GAC5B,OAAO,CAAC,wBAAwB,CAAC,CA4EnC;AAgWD;;;;;GAKG;AACH,wBAAsB,qBAAqB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAE9E;AAED;;;;;;;GAOG;AACH,wBAAsB,yBAAyB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAiB1E"}

package/dist/tools/conversation-index-tools.js

@@ -1,9 +1,10 @@
 import { readdir, stat, readFile } from "node:fs/promises";
 import { join, relative, basename } from "node:path";
 import { extractConversationSymbols } from "../parser/symbol-extractor.js";
-import { saveIndex, getIndexPath } from "../storage/index-store.js";
+import { saveIndex, getIndexPath, loadIndex, loadIndexSummary, saveIncremental, removeFileFromIndex, } from "../storage/index-store.js";
 import { registerRepo } from "../storage/registry.js";
-import { buildBM25IndexYielding } from "../search/bm25.js";
+import { buildBM25IndexYielding, updateBM25ForFile } from "../search/bm25.js";
+import { loadBM25Index, saveBM25Index } from "../search/bm25-store.js";
 import { loadConfig } from "../config.js";
 import { embedSymbols } from "./index-tools.js";
 import { setConversationBM25Index } from "./conversation-cache.js";
@@ -24,9 +25,63 @@ export async function indexConversations(projectPath, options) {
     // Derive repo name: "conversations/<folder>"
     const repoName = `conversations/${basename(rootPath)}`;
     const indexPath = getIndexPath(config.dataDir, rootPath);
+    // Nothing detected change, so every call did everything: read every .jsonl, re-extract every turn,
+    // rebuild the BM25 index. `autoDiscoverConversations` runs this on server start, and the largest
+    // conversation directory here is 160,626 turns / 72 MB of source whose BM25 build alone measures
+    // 35.8 s — paid on every spawn, for a directory that usually gained one session or nothing.
+    //
+    // It is also what made persisting the index pointless: `persistConversationIndex` stamps
+    // `updated_at: Date.now()`, so an unconditional rescan invalidated its own cache every time.
+    // `embed` is the ONE thing a skip cannot stand in for. Embedding is opt-in and only an explicit
+    // `index_conversations` asks for it, so skipping on "the files did not change" silently drops the
+    // work the caller invoked the tool to get — the directory being unchanged says nothing about
+    // whether its vectors exist. Found by the cross-model review of this release; it is a regression
+    // the fast paths introduced, not pre-existing behaviour.
+    const wantsEmbed = options?.embed ?? true;
+    const unchanged = wantsEmbed ? null : await conversationsUnchanged(rootPath, indexPath);
+    if (unchanged) {
+        return {
+            sessions_found: unchanged.sessions,
+            turns_indexed: unchanged.turns,
+            skipped_noise_records: 0,
+            compacted_sessions: 0,
+            elapsed_ms: Date.now() - startTime,
+            unchanged: true,
+        };
+    }
+    // Re-extract only the sessions that moved.
+    //
+    // The skip above covers a directory nothing touched, which is every project except the one being
+    // worked in. The ACTIVE project's directory changes on every turn, so for it the skip can never
+    // fire — and a full pass over the largest one here measures 156 s (211 sessions, 164,500 turns).
+    // `autoDiscoverConversations` runs on every server spawn, so that was paid per session, on one
+    // thread, in the process whose event loop is the bottleneck.
+    //
+    // A conversation log is append-only and sessions are independent files, which is the case
+    // `updateBM25ForFile` already exists for: swap the changed file's symbols in place rather than
+    // rebuilding the vocabulary for all 164,500 turns.
+    // Same reason the skip is gated above: `incrementalConversationUpdate` already refuses when embedding
+    // was asked for (its first guard), and this makes that refusal visible at the call site rather than
+    // only inside the callee.
+    const incremental = wantsEmbed
+        ? null
+        : await incrementalConversationUpdate(rootPath, repoName, indexPath, options);
+    if (incremental) {
+        return {
+            sessions_found: incremental.sessions,
+            turns_indexed: incremental.turns,
+            skipped_noise_records: 0,
+            // Recomputed from the merged symbols rather than reported as 0. It is one pass over symbols this
+            // function already holds, and a silent 0 is indistinguishable from "scanned, found none".
+            compacted_sessions: incremental.compacted,
+            elapsed_ms: Date.now() - startTime,
+            incremental: true,
+            changed_sessions: incremental.changed,
+        };
+    }
     const scan = await scanConversationFiles(rootPath, repoName);
     // Explicit call embeds by default; auto-discovery passes embed:false (see below).
-    await persistConversationIndex(rootPath, repoName, indexPath, scan, { embed: options?.embed ?? true });
+    await persistConversationIndex(rootPath, repoName, indexPath, scan, { embed: wantsEmbed });
     return {
         sessions_found: scan.sessions,
         turns_indexed: scan.turns,
@@ -35,6 +90,249 @@ export async function indexConversations(projectPath, options) {
         elapsed_ms: Date.now() - startTime,
     };
 }
+/**
+ * Counts from the stored index when the directory is byte-for-byte the same, otherwise null.
+ *
+ * Compares the SET of `.jsonl` files and each one's mtime against what the index recorded. A
+ * conversation log is append-only, so an appended turn moves the mtime; a new session adds a path;
+ * a deleted one removes it. Any of those, or a summary that cannot be read, means rescan — the
+ * conservative direction, since the cost of rescanning is time and the cost of skipping wrongly is
+ * a search that cannot see a conversation.
+ *
+ * `compacted_sessions` is not stored and cannot be recovered here, so a skip reports 0 for it rather
+ * than a number it would have to invent; `unchanged: true` in the result says which kind of answer
+ * this is.
+ */
+async function conversationsUnchanged(rootPath, indexPath) {
+    let summary;
+    try {
+        summary = await loadIndexSummary(indexPath);
+    }
+    catch {
+        return null;
+    }
+    if (!summary || summary.files.length === 0)
+        return null;
+    let entries;
+    try {
+        entries = (await readdir(rootPath)).filter((name) => name.endsWith(".jsonl"));
+    }
+    catch {
+        return null;
+    }
+    if (entries.length !== summary.files.length)
+        return null;
+    const recorded = new Map();
+    for (const file of summary.files) {
+        const mtime = file.mtime_ms ?? 0;
+        // An index written before mtimes were recorded cannot be compared — rescan rather than guess.
+        if (mtime === 0)
+            return null;
+        recorded.set(file.path, mtime);
+    }
+    for (const name of entries) {
+        const expected = recorded.get(name);
+        if (expected === undefined)
+            return null;
+        try {
+            if ((await stat(join(rootPath, name))).mtimeMs !== expected)
+                return null;
+        }
+        catch {
+            return null;
+        }
+    }
+    // Indexed SYMBOLS, which is turns plus one `conversation_summary` per compacted session. The split
+    // is not stored per file, and loading every symbol to recover it would cost more than this whole
+    // skip saves — so the number is named honestly on `unchanged` rather than silently differing from a
+    // scanned pass by the compacted count.
+    let symbols = 0;
+    for (const file of summary.files)
+        symbols += file.symbol_count;
+    return { sessions: summary.files.length, turns: symbols };
+}
+/**
+ * Swap the changed sessions into the stored index, or null when that cannot be done safely.
+ *
+ * Returns null — meaning "fall back to a full pass" — whenever anything is not certainly known: no
+ * stored index, an index written before mtimes were recorded, no persisted BM25 index to amend, or
+ * too much of the directory changed for amending to be cheaper than rebuilding. Falling back is
+ * always correct; amending on a wrong assumption produces an index that searches cleanly and is
+ * missing turns.
+ *
+ * Embeddings deliberately stay on the full path. They are opt-in, they are the expensive part when
+ * enabled, and an incremental embed needs its own per-symbol accounting rather than a file-level one.
+ */
+/**
+ * Largest share of a conversation directory that is still worth amending file by file.
+ *
+ * Measured 2026-09-27 on a 15,838-symbol / 788-session index, amending against one clean
+ * `buildBM25Index` (4,211 ms):
+ *
+ *     5%   39 files    183 ms   amend wins  x22.96
+ *    25%  197 files    200 ms   amend wins  x21.00
+ *    50%  394 files  1,639 ms   amend wins   x2.57
+ *    75%  591 files 14,037 ms   REBUILD wins x0.30
+ *   100%  788 files 22,888 ms   REBUILD wins x0.18
+ *
+ * The crossover is between 50% and 75%, and the amend cost grows SUPERLINEARLY — each amended file is
+ * a remove-then-add over the postings maps every other file shares, so the churn compounds. That is
+ * why the bound is conservative rather than set at the crossover: past it the penalty is not a few
+ * percent, it is 5x.
+ *
+ * `centrality` is NOT a reason for this bound, though an earlier version of this comment said it was:
+ * a conversation index has **zero** centrality entries (measured on two of them), because there is no
+ * import graph in a chat log. `compacted_sessions` is not a reason either any more — it is recomputed
+ * from the merged symbols.
+ */
+const CONVERSATION_AMEND_MAX_SHARE = 0.5;
+async function incrementalConversationUpdate(rootPath, repoName, indexPath, options) {
+    if (options?.embed)
+        return null;
+    let stored;
+    try {
+        stored = await loadIndex(indexPath);
+    }
+    catch {
+        return null;
+    }
+    if (!stored || stored.files.length === 0 || stored.symbols.length === 0)
+        return null;
+    let entries;
+    try {
+        entries = (await readdir(rootPath)).filter((name) => name.endsWith(".jsonl"));
+    }
+    catch {
+        return null;
+    }
+    const recorded = new Map();
+    for (const file of stored.files) {
+        if ((file.mtime_ms ?? 0) === 0)
+            return null;
+        recorded.set(file.path, file);
+    }
+    const present = new Set(entries);
+    const removed = [...recorded.keys()].filter((path) => !present.has(path));
+    const changed = [];
+    for (const name of entries) {
+        let mtimeMs;
+        try {
+            mtimeMs = (await stat(join(rootPath, name))).mtimeMs;
+        }
+        catch {
+            return null;
+        }
+        if (recorded.get(name)?.mtime_ms !== mtimeMs)
+            changed.push({ path: name, mtimeMs });
+    }
+    if (changed.length === 0 && removed.length === 0)
+        return null; // the caller's skip already handled this
+    // Past this share of the directory, amending stops being cheaper than one clean pass: every amended
+    // file costs a remove-then-add over the shared postings maps, which churns the vocabulary, while a
+    // full build ingests each symbol once. The bound is measured, not guessed — see
+    // CONVERSATION_AMEND_MAX_SHARE.
+    if (changed.length + removed.length > Math.max(1, Math.floor(entries.length * CONVERSATION_AMEND_MAX_SHARE))) {
+        return null;
+    }
+    const bm25 = await loadBM25Index(indexPath, stored);
+    if (!bm25)
+        return null;
+    const symbolsByFile = new Map();
+    for (const symbol of stored.symbols) {
+        const list = symbolsByFile.get(symbol.file);
+        if (list)
+            list.push(symbol);
+        else
+            symbolsByFile.set(symbol.file, [symbol]);
+    }
+    const files = new Map(recorded);
+    for (const path of removed) {
+        updateBM25ForFile(bm25, path, []);
+        symbolsByFile.delete(path);
+        files.delete(path);
+    }
+    for (const { path, mtimeMs } of changed) {
+        let source;
+        try {
+            source = await readFile(join(rootPath, path), "utf-8");
+        }
+        catch {
+            return null;
+        }
+        const symbols = extractConversationSymbols(source, path, repoName);
+        updateBM25ForFile(bm25, path, symbols);
+        symbolsByFile.set(path, symbols);
+        files.set(path, {
+            path,
+            language: "conversation",
+            symbol_count: symbols.length,
+            last_modified: mtimeMs,
+            mtime_ms: mtimeMs,
+        });
+    }
+    const mergedSymbols = [];
+    let compacted = 0;
+    let turns = 0;
+    for (const list of symbolsByFile.values()) {
+        mergedSymbols.push(...list);
+        // `turns_indexed` counts TURNS, and a compacted session also carries one `conversation_summary`
+        // symbol. Reporting `mergedSymbols.length` over-counted by exactly the number of compacted
+        // sessions — 15,894 against the full path's 15,887 on this machine, with compacted = 7.
+        for (const symbol of list) {
+            if (symbol.kind === "conversation_turn")
+                turns++;
+            else if (symbol.kind === "conversation_summary")
+                compacted++;
+        }
+    }
+    const mergedFiles = [...files.values()];
+    // Write only the rows that moved. `saveIndex` rewrites every symbol of the repo: measured on a
+    // 15,838-symbol conversation index, 1,494 ms against **0-1 ms** for `saveIncremental` on one file —
+    // and the whole point of this path is that two sessions changed. Deletions go through
+    // `removeFileFromIndex`, which also drops the `files[]` row; `saveIncremental` would leave it.
+    for (const path of removed)
+        await removeFileFromIndex(indexPath, path);
+    for (const { path } of changed) {
+        await saveIncremental(indexPath, path, symbolsByFile.get(path) ?? [], files.get(path));
+    }
+    // Both writers stamp `updated_at` themselves, so the value has to be read back rather than assumed:
+    // the BM25 header must carry what the database now says, or every later search rejects the file and
+    // rebuilds — the exact state this path exists to leave behind.
+    let updatedAt = Date.now();
+    try {
+        updatedAt = (await loadIndexSummary(indexPath))?.updated_at ?? updatedAt;
+    }
+    catch {
+        return null; // cannot prove what the index says; a full pass will rewrite both consistently
+    }
+    const codeIndex = {
+        repo: repoName,
+        root: rootPath,
+        symbols: mergedSymbols,
+        files: mergedFiles,
+        created_at: stored.created_at,
+        updated_at: updatedAt,
+        symbol_count: mergedSymbols.length,
+        file_count: mergedFiles.length,
+    };
+    await saveBM25Index(indexPath, bm25, codeIndex);
+    setConversationBM25Index(repoName, bm25, codeIndex.updated_at);
+    const meta = {
+        name: repoName,
+        root: rootPath,
+        index_path: indexPath,
+        symbol_count: codeIndex.symbol_count,
+        file_count: codeIndex.file_count,
+        updated_at: codeIndex.updated_at,
+    };
+    await registerRepo(loadConfig().registryPath, meta);
+    return {
+        sessions: mergedFiles.length,
+        turns,
+        changed: changed.length + removed.length,
+        compacted,
+    };
+}
 async function scanConversationFiles(rootPath, repoName) {
     let entries;
     try {
@@ -48,7 +346,9 @@ async function scanConversationFiles(rootPath, repoName) {
         const filePath = join(rootPath, fileName);
         // Read and extract
         let source;
+        let mtimeMs = 0;
         try {
+            mtimeMs = (await stat(filePath)).mtimeMs;
             source = await readFile(filePath, "utf-8");
         }
         catch {
@@ -67,7 +367,12 @@ async function scanConversationFiles(rootPath, repoName) {
             path: relPath,
             language: "conversation",
             symbol_count: symbols.length,
-            last_modified: Date.now(),
+            // The FILE's mtime, not the scan's clock. This was `Date.now()`, which records when the
+            // scanner ran and therefore cannot be compared against anything on disk — so a stored
+            // conversation index could never be shown to be current, and every scan was a full rescan.
+            // `mtime_ms` is the field the type already documents as "for incremental skip".
+            last_modified: mtimeMs,
+            mtime_ms: mtimeMs,
         };
         scan.files.push(entry);
     }
@@ -88,6 +393,12 @@ async function persistConversationIndex(rootPath, repoName, indexPath, scan, opt
         file_count: scan.files.length,
     };
     await saveIndex(indexPath, codeIndex);
+    // Persist the BM25 index beside the code index, with the SAME `codeIndex` object that was just
+    // written — `saveBM25Index` stamps its header from it, and `loadBM25Index` refuses a header that
+    // disagrees. Writing it here rather than from the search path is what lets a search LOAD the index
+    // (4.3x to 20x faster than rebuilding, measured on this machine's three largest conversation
+    // directories) instead of tokenising the whole corpus again.
+    await saveBM25Index(indexPath, bm25, codeIndex);
     // Embedding conversations is OPT-IN. This used to fire unconditionally and
     // unawaited on every server start (autoDiscoverConversations → here), so each
     // of N concurrent MCP servers began embedding the whole ~/.claude/projects

package/dist/tools/conversation-index-tools.js.map

@@ -1 +1 @@
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package/dist/tools/conversation-search-tools.d.ts

@@ -25,11 +25,6 @@ export declare function searchConversations(query: string, projectPath?: string,
      * query once instead of once per conversation repo. */
     queryVec?: Float32Array;
 }): Promise<SearchConversationsResult>;
-/**
- * Search ALL indexed conversation projects at once.
- * Iterates over all `conversations/*` repos in the registry,
- * searches each, merges and re-ranks results.
- */
 export declare function searchAllConversations(query: string, limit?: number): Promise<SearchConversationsResult & {
     projects_searched: number;
 }>;