npm - codesift-mcp - Versions diffs - 0.14.0 → 0.15.0 - Mend

codesift-mcp 0.14.0 → 0.15.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (454) hide show

package/README.md +5 -1
package/dist/cli/commands-admin.d.ts +18 -0
package/dist/cli/commands-admin.d.ts.map +1 -0
package/dist/cli/commands-admin.js +187 -0
package/dist/cli/commands-admin.js.map +1 -0
package/dist/cli/commands-daemon.d.ts +42 -0
package/dist/cli/commands-daemon.d.ts.map +1 -0
package/dist/cli/commands-daemon.js +163 -0
package/dist/cli/commands-daemon.js.map +1 -0
package/dist/cli/commands-index.d.ts +12 -0
package/dist/cli/commands-index.d.ts.map +1 -0
package/dist/cli/commands-index.js +133 -0
package/dist/cli/commands-index.js.map +1 -0
package/dist/cli/commands-maintenance.d.ts +12 -0
package/dist/cli/commands-maintenance.d.ts.map +1 -0
package/dist/cli/commands-maintenance.js +409 -0
package/dist/cli/commands-maintenance.js.map +1 -0
package/dist/cli/commands-query.d.ts +21 -0
package/dist/cli/commands-query.d.ts.map +1 -0
package/dist/cli/commands-query.js +270 -0
package/dist/cli/commands-query.js.map +1 -0
package/dist/cli/commands.d.ts +2 -36
package/dist/cli/commands.d.ts.map +1 -1
package/dist/cli/commands.js +8 -867
package/dist/cli/commands.js.map +1 -1
package/dist/cli/embed-child.js +13 -2
package/dist/cli/embed-child.js.map +1 -1
package/dist/instructions.d.ts +1 -1
package/dist/instructions.d.ts.map +1 -1
package/dist/instructions.js +5 -2
package/dist/instructions.js.map +1 -1
package/dist/parser/extractors/php-class-metadata.d.ts +10 -0
package/dist/parser/extractors/php-class-metadata.d.ts.map +1 -0
package/dist/parser/extractors/php-class-metadata.js +65 -0
package/dist/parser/extractors/php-class-metadata.js.map +1 -0
package/dist/parser/extractors/php-doc.d.ts +13 -0
package/dist/parser/extractors/php-doc.d.ts.map +1 -0
package/dist/parser/extractors/php-doc.js +39 -0
package/dist/parser/extractors/php-doc.js.map +1 -0
package/dist/parser/extractors/php-node-metadata.d.ts +26 -0
package/dist/parser/extractors/php-node-metadata.d.ts.map +1 -0
package/dist/parser/extractors/php-node-metadata.js +132 -0
package/dist/parser/extractors/php-node-metadata.js.map +1 -0
package/dist/parser/extractors/php-symbol-builders.d.ts +13 -0
package/dist/parser/extractors/php-symbol-builders.d.ts.map +1 -0
package/dist/parser/extractors/php-symbol-builders.js +58 -0
package/dist/parser/extractors/php-symbol-builders.js.map +1 -0
package/dist/parser/extractors/php-walker.d.ts +4 -0
package/dist/parser/extractors/php-walker.d.ts.map +1 -0
package/dist/parser/extractors/php-walker.js +238 -0
package/dist/parser/extractors/php-walker.js.map +1 -0
package/dist/parser/extractors/php.d.ts +2 -33
package/dist/parser/extractors/php.d.ts.map +1 -1
package/dist/parser/extractors/php.js +2 -747
package/dist/parser/extractors/php.js.map +1 -1
package/dist/register-tool-loaders.d.ts +11 -11
package/dist/register-tool-loaders.d.ts.map +1 -1
package/dist/register-tools/runtime.d.ts +11 -0
package/dist/register-tools/runtime.d.ts.map +1 -1
package/dist/register-tools/runtime.js +40 -0
package/dist/register-tools/runtime.js.map +1 -1
package/dist/register-tools.d.ts.map +1 -1
package/dist/register-tools.js +5 -1
package/dist/register-tools.js.map +1 -1
package/dist/retrieval/semantic-handlers.d.ts.map +1 -1
package/dist/retrieval/semantic-handlers.js +10 -3
package/dist/retrieval/semantic-handlers.js.map +1 -1
package/dist/search/semantic.d.ts +2 -0
package/dist/search/semantic.d.ts.map +1 -1
package/dist/search/semantic.js +41 -9
package/dist/search/semantic.js.map +1 -1
package/dist/storage/chunk-store.d.ts +14 -2
package/dist/storage/chunk-store.d.ts.map +1 -1
package/dist/storage/chunk-store.js +214 -34
package/dist/storage/chunk-store.js.map +1 -1
package/dist/storage/embedding-store.d.ts +0 -12
package/dist/storage/embedding-store.d.ts.map +1 -1
package/dist/storage/embedding-store.js +69 -9
package/dist/storage/embedding-store.js.map +1 -1
package/dist/storage/index-cache.d.ts +12 -0
package/dist/storage/index-cache.d.ts.map +1 -0
package/dist/storage/index-cache.js +89 -0
package/dist/storage/index-cache.js.map +1 -0
package/dist/storage/index-json-mutations.d.ts +11 -0
package/dist/storage/index-json-mutations.d.ts.map +1 -0
package/dist/storage/index-json-mutations.js +93 -0
package/dist/storage/index-json-mutations.js.map +1 -0
package/dist/storage/index-migration.d.ts +22 -0
package/dist/storage/index-migration.d.ts.map +1 -0
package/dist/storage/index-migration.js +80 -0
package/dist/storage/index-migration.js.map +1 -0
package/dist/storage/index-store.d.ts +5 -61
package/dist/storage/index-store.d.ts.map +1 -1
package/dist/storage/index-store.js +33 -414
package/dist/storage/index-store.js.map +1 -1
package/dist/storage/index-version.d.ts +39 -0
package/dist/storage/index-version.d.ts.map +1 -0
package/dist/storage/index-version.js +87 -0
package/dist/storage/index-version.js.map +1 -0
package/dist/storage/registry.d.ts +9 -1
package/dist/storage/registry.d.ts.map +1 -1
package/dist/storage/registry.js +169 -8
package/dist/storage/registry.js.map +1 -1
package/dist/storage/shared-embedding-cache.d.ts +23 -3
package/dist/storage/shared-embedding-cache.d.ts.map +1 -1
package/dist/storage/shared-embedding-cache.js +300 -45
package/dist/storage/shared-embedding-cache.js.map +1 -1
package/dist/storage/telemetry/config.d.ts.map +1 -1
package/dist/storage/telemetry/config.js +3 -2
package/dist/storage/telemetry/config.js.map +1 -1
package/dist/storage/telemetry/retro-aggregator.d.ts +21 -0
package/dist/storage/telemetry/retro-aggregator.d.ts.map +1 -1
package/dist/storage/telemetry/retro-aggregator.js +58 -16
package/dist/storage/telemetry/retro-aggregator.js.map +1 -1
package/dist/storage/telemetry/sanitizer.d.ts +16 -0
package/dist/storage/telemetry/sanitizer.d.ts.map +1 -1
package/dist/storage/telemetry/sanitizer.js +2 -0
package/dist/storage/telemetry/sanitizer.js.map +1 -1
package/dist/storage/telemetry/uploader.d.ts +3 -1
package/dist/storage/telemetry/uploader.d.ts.map +1 -1
package/dist/storage/telemetry/uploader.js +158 -21
package/dist/storage/telemetry/uploader.js.map +1 -1
package/dist/tools/cross-repo-contract-adapters.d.ts +39 -0
package/dist/tools/cross-repo-contract-adapters.d.ts.map +1 -0
package/dist/tools/cross-repo-contract-adapters.js +70 -0
package/dist/tools/cross-repo-contract-adapters.js.map +1 -0
package/dist/tools/cross-repo-contract-group.d.ts +17 -0
package/dist/tools/cross-repo-contract-group.d.ts.map +1 -0
package/dist/tools/cross-repo-contract-group.js +89 -0
package/dist/tools/cross-repo-contract-group.js.map +1 -0
package/dist/tools/cross-repo-contract-matcher.d.ts +24 -0
package/dist/tools/cross-repo-contract-matcher.d.ts.map +1 -0
package/dist/tools/cross-repo-contract-matcher.js +134 -0
package/dist/tools/cross-repo-contract-matcher.js.map +1 -0
package/dist/tools/cross-repo-contract-resolver.d.ts +9 -0
package/dist/tools/cross-repo-contract-resolver.d.ts.map +1 -0
package/dist/tools/cross-repo-contract-resolver.js +86 -0
package/dist/tools/cross-repo-contract-resolver.js.map +1 -0
package/dist/tools/cross-repo-contract-tools.d.ts +12 -135
package/dist/tools/cross-repo-contract-tools.d.ts.map +1 -1
package/dist/tools/cross-repo-contract-tools.js +8 -589
package/dist/tools/cross-repo-contract-tools.js.map +1 -1
package/dist/tools/cross-repo-contract-types.d.ts +30 -0
package/dist/tools/cross-repo-contract-types.d.ts.map +1 -0
package/dist/tools/cross-repo-contract-types.js +3 -0
package/dist/tools/cross-repo-contract-types.js.map +1 -0
package/dist/tools/cross-repo-outbound-calls.d.ts +28 -0
package/dist/tools/cross-repo-outbound-calls.d.ts.map +1 -0
package/dist/tools/cross-repo-outbound-calls.js +347 -0
package/dist/tools/cross-repo-outbound-calls.js.map +1 -0
package/dist/tools/cross-repo-outbound-lexer/call-detectors.d.ts.map +1 -1
package/dist/tools/cross-repo-outbound-lexer/call-detectors.js +2 -0
package/dist/tools/cross-repo-outbound-lexer/call-detectors.js.map +1 -1
package/dist/tools/cross-repo-outbound-lexer/types.d.ts +2 -0
package/dist/tools/cross-repo-outbound-lexer/types.d.ts.map +1 -1
package/dist/tools/index-tools/file-indexer.js +3 -3
package/dist/tools/index-tools/file-indexer.js.map +1 -1
package/dist/tools/index-tools/folder-indexer.d.ts.map +1 -1
package/dist/tools/index-tools/folder-indexer.js +47 -2
package/dist/tools/index-tools/folder-indexer.js.map +1 -1
package/dist/tools/index-tools/parse.d.ts +12 -3
package/dist/tools/index-tools/parse.d.ts.map +1 -1
package/dist/tools/index-tools/parse.js +33 -8
package/dist/tools/index-tools/parse.js.map +1 -1
package/dist/tools/index-tools/registry.d.ts +19 -0
package/dist/tools/index-tools/registry.d.ts.map +1 -1
package/dist/tools/index-tools/registry.js +88 -2
package/dist/tools/index-tools/registry.js.map +1 -1
package/dist/tools/index-tools/state.d.ts +31 -0
package/dist/tools/index-tools/state.d.ts.map +1 -1
package/dist/tools/index-tools/state.js +53 -0
package/dist/tools/index-tools/state.js.map +1 -1
package/dist/tools/index-tools/types.d.ts +9 -0
package/dist/tools/index-tools/types.d.ts.map +1 -1
package/dist/tools/index-tools/watcher.js +3 -3
package/dist/tools/index-tools/watcher.js.map +1 -1
package/dist/tools/index-tools/worktree-seed.d.ts +44 -0
package/dist/tools/index-tools/worktree-seed.d.ts.map +1 -0
package/dist/tools/index-tools/worktree-seed.js +302 -0
package/dist/tools/index-tools/worktree-seed.js.map +1 -0
package/dist/tools/index-tools.d.ts.map +1 -1
package/dist/tools/index-tools.js +3 -1
package/dist/tools/index-tools.js.map +1 -1
package/dist/tools/nest-ext-tools/graphql.d.ts +17 -0
package/dist/tools/nest-ext-tools/graphql.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/graphql.js +54 -0
package/dist/tools/nest-ext-tools/graphql.js.map +1 -0
package/dist/tools/nest-ext-tools/microservice.d.ts +17 -0
package/dist/tools/nest-ext-tools/microservice.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/microservice.js +51 -0
package/dist/tools/nest-ext-tools/microservice.js.map +1 -0
package/dist/tools/nest-ext-tools/openapi.d.ts +81 -0
package/dist/tools/nest-ext-tools/openapi.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/openapi.js +254 -0
package/dist/tools/nest-ext-tools/openapi.js.map +1 -0
package/dist/tools/nest-ext-tools/queue.d.ts +27 -0
package/dist/tools/nest-ext-tools/queue.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/queue.js +95 -0
package/dist/tools/nest-ext-tools/queue.js.map +1 -0
package/dist/tools/nest-ext-tools/schedule.d.ts +19 -0
package/dist/tools/nest-ext-tools/schedule.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/schedule.js +89 -0
package/dist/tools/nest-ext-tools/schedule.js.map +1 -0
package/dist/tools/nest-ext-tools/scope.d.ts +19 -0
package/dist/tools/nest-ext-tools/scope.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/scope.js +151 -0
package/dist/tools/nest-ext-tools/scope.js.map +1 -0
package/dist/tools/nest-ext-tools/shared.d.ts +33 -0
package/dist/tools/nest-ext-tools/shared.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/shared.js +279 -0
package/dist/tools/nest-ext-tools/shared.js.map +1 -0
package/dist/tools/nest-ext-tools/typeorm.d.ts +22 -0
package/dist/tools/nest-ext-tools/typeorm.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/typeorm.js +59 -0
package/dist/tools/nest-ext-tools/typeorm.js.map +1 -0
package/dist/tools/nest-ext-tools/websocket.d.ts +21 -0
package/dist/tools/nest-ext-tools/websocket.d.ts.map +1 -0
package/dist/tools/nest-ext-tools/websocket.js +70 -0
package/dist/tools/nest-ext-tools/websocket.js.map +1 -0
package/dist/tools/nest-ext-tools.d.ts +10 -204
package/dist/tools/nest-ext-tools.d.ts.map +1 -1
package/dist/tools/nest-ext-tools.js +10 -749
package/dist/tools/nest-ext-tools.js.map +1 -1
package/dist/tools/perf-tools.js +2 -2
package/dist/tools/python-audit/checks/dead-code.d.ts +1 -1
package/dist/tools/python-audit/checks/dead-code.d.ts.map +1 -1
package/dist/tools/python-constants/constant-match.d.ts +5 -0
package/dist/tools/python-constants/constant-match.d.ts.map +1 -0
package/dist/tools/python-constants/constant-match.js +24 -0
package/dist/tools/python-constants/constant-match.js.map +1 -0
package/dist/tools/python-constants/file-context.d.ts +5 -0
package/dist/tools/python-constants/file-context.d.ts.map +1 -0
package/dist/tools/python-constants/file-context.js +91 -0
package/dist/tools/python-constants/file-context.js.map +1 -0
package/dist/tools/python-constants/function-defaults.d.ts +5 -0
package/dist/tools/python-constants/function-defaults.d.ts.map +1 -0
package/dist/tools/python-constants/function-defaults.js +98 -0
package/dist/tools/python-constants/function-defaults.js.map +1 -0
package/dist/tools/python-constants/model.d.ts +78 -0
package/dist/tools/python-constants/model.d.ts.map +1 -0
package/dist/tools/python-constants/model.js +2 -0
package/dist/tools/python-constants/model.js.map +1 -0
package/dist/tools/python-constants/syntax.d.ts +22 -0
package/dist/tools/python-constants/syntax.d.ts.map +1 -0
package/dist/tools/python-constants/syntax.js +93 -0
package/dist/tools/python-constants/syntax.js.map +1 -0
package/dist/tools/python-constants/value-resolver.d.ts +6 -0
package/dist/tools/python-constants/value-resolver.d.ts.map +1 -0
package/dist/tools/python-constants/value-resolver.js +320 -0
package/dist/tools/python-constants/value-resolver.js.map +1 -0
package/dist/tools/python-constants-tools.d.ts +3 -45
package/dist/tools/python-constants-tools.d.ts.map +1 -1
package/dist/tools/python-constants-tools.js +2 -505
package/dist/tools/python-constants-tools.js.map +1 -1
package/dist/tools/route-tools/django.d.ts +8 -0
package/dist/tools/route-tools/django.d.ts.map +1 -0
package/dist/tools/route-tools/django.js +52 -0
package/dist/tools/route-tools/django.js.map +1 -0
package/dist/tools/route-tools/express.d.ts +5 -0
package/dist/tools/route-tools/express.d.ts.map +1 -0
package/dist/tools/route-tools/express.js +33 -0
package/dist/tools/route-tools/express.js.map +1 -0
package/dist/tools/route-tools/file-sources.d.ts +7 -0
package/dist/tools/route-tools/file-sources.d.ts.map +1 -0
package/dist/tools/route-tools/file-sources.js +15 -0
package/dist/tools/route-tools/file-sources.js.map +1 -0
package/dist/tools/route-tools/handler-discovery.d.ts +4 -0
package/dist/tools/route-tools/handler-discovery.d.ts.map +1 -0
package/dist/tools/route-tools/handler-discovery.js +38 -0
package/dist/tools/route-tools/handler-discovery.js.map +1 -0
package/dist/tools/route-tools/hono.d.ts +5 -0
package/dist/tools/route-tools/hono.d.ts.map +1 -0
package/dist/tools/route-tools/hono.js +61 -0
package/dist/tools/route-tools/hono.js.map +1 -0
package/dist/tools/route-tools/ktor.d.ts +5 -0
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package/dist/tools/route-tools/ktor.js +76 -0
package/dist/tools/route-tools/ktor.js.map +1 -0
package/dist/tools/route-tools/laravel.d.ts +5 -0
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package/dist/tools/route-tools/laravel.js +45 -0
package/dist/tools/route-tools/laravel.js.map +1 -0
package/dist/tools/route-tools/mermaid-call-chain.d.ts +3 -0
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package/dist/tools/route-tools/mermaid-call-chain.js +50 -0
package/dist/tools/route-tools/mermaid-call-chain.js.map +1 -0
package/dist/tools/route-tools/nest.d.ts +5 -0
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package/dist/tools/route-tools/nest.js +75 -0
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package/dist/tools/route-tools/next-trace.js +48 -0
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1	+ {"version":3,"file":"import-graph.js","sourceRoot":"","sources":["../../src/utils/import-graph.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,cAAc,EAAE,kBAAkB,EAAE,MAAM,kCAAkC,CAAC;AACtF,OAAO,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AACvF,OAAO,EACL,0BAA0B,EAC1B,oBAAoB,EACpB,uBAAuB,EACvB,mBAAmB,GACpB,MAAM,oCAAoC,CAAC;AAC5C,OAAO,EAAE,2BAA2B,EAAE,MAAM,mCAAmC,CAAC;AAChF,OAAO,EAAE,kBAAkB,EAAE,MAAM,2BAA2B,CAAC;AAC/D,OAAO,EAAE,iBAAiB,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAC"}

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "codesift-mcp",
-  "version": "0.14.0",
+  "version": "0.15.0",
   "description": "MCP server for code intelligence — 146 tools for symbol search, call graph, semantic search, route tracing, community detection, LSP bridge, secret detection, conversation search, and Hono framework intelligence",
   "license": "BSL-1.1",
   "author": "Greg Laskowski",

package/rules/codesift.md CHANGED Viewed

@@ -239,7 +239,10 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 - Use `semantic_search` or `codebase_retrieval(type:"semantic")` for conceptual questions
 - Use `trace_route` FIRST for any API endpoint — NEVER multiple `search_text` + `trace_call_chain`
 - Use `detect_communities` BEFORE `get_knowledge_map` — NEVER `knowledge_map` without communities first
-- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s)
+- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s).
+  **Exception, and it is the one that keeps biting: a linked worktree.** "Already indexed"
+  is about the repo the answer comes FROM, and in a worktree that is the parent checkout,
+  not your tree. Index yours once — see NEVER below.
 - Pass `include_source=true` on `search_symbols`
 - Use `get_symbols` (batch) for 2+ symbols — NEVER sequential `get_symbol`
 - Batch 3+ searches into `codebase_retrieval`
@@ -248,7 +251,13 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 ## NEVER
-- Call `index_folder` if repo is already indexed — file watcher auto-updates
+- Call `index_folder` if repo is already indexed — file watcher auto-updates.
+  **This does NOT apply when your CWD is a linked git worktree.** Auto-indexing deliberately
+  refuses to index a worktree and defers to the parent checkout, so `index_status` reports the
+  PARENT as indexed and healthy while describing files that are not yours. Reading that as
+  "already indexed" and falling back to `rg` is the single most common way agents lose CodeSift
+  in a worktree. Run `index_folder(path=<your worktree>)` once — that is not a re-index, it is
+  the first index of a repo that has none.
 - Call `list_repos` in single-repo sessions — repo auto-resolves from CWD
 - Use manual Edit on multiple files for rename — use `rename_symbol`
 - Read entire file just to get a return type — use `get_type_info`

package/rules/codesift.mdc CHANGED Viewed

@@ -222,7 +222,10 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 - Use `semantic_search` or `codebase_retrieval(type:"semantic")` for conceptual questions
 - Use `trace_route` FIRST for any API endpoint — NEVER multiple `search_text` + `trace_call_chain`
 - Use `detect_communities` BEFORE `get_knowledge_map` — NEVER `knowledge_map` without communities first
-- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s)
+- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s).
+  **Exception, and it is the one that keeps biting: a linked worktree.** "Already indexed"
+  is about the repo the answer comes FROM, and in a worktree that is the parent checkout,
+  not your tree. Index yours once — see NEVER below.
 - Pass `include_source=true` on `search_symbols`
 - Use `get_symbols` (batch) for 2+ symbols — NEVER sequential `get_symbol`
 - Batch 3+ searches into `codebase_retrieval`
@@ -231,7 +234,13 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 ## NEVER
-- Call `index_folder` if repo is already indexed — file watcher auto-updates
+- Call `index_folder` if repo is already indexed — file watcher auto-updates.
+  **This does NOT apply when your CWD is a linked git worktree.** Auto-indexing deliberately
+  refuses to index a worktree and defers to the parent checkout, so `index_status` reports the
+  PARENT as indexed and healthy while describing files that are not yours. Reading that as
+  "already indexed" and falling back to `rg` is the single most common way agents lose CodeSift
+  in a worktree. Run `index_folder(path=<your worktree>)` once — that is not a re-index, it is
+  the first index of a repo that has none.
 - Call `list_repos` in single-repo sessions — repo auto-resolves from CWD
 - Use manual Edit on multiple files for rename — use `rename_symbol`
 - Read entire file just to get a return type — use `get_type_info`

package/rules/codex.md CHANGED Viewed

@@ -217,7 +217,10 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 - Use `semantic_search` or `codebase_retrieval(type:"semantic")` for conceptual questions
 - Use `trace_route` FIRST for any API endpoint — NEVER multiple `search_text` + `trace_call_chain`
 - Use `detect_communities` BEFORE `get_knowledge_map` — NEVER `knowledge_map` without communities first
-- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s)
+- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s).
+  **Exception, and it is the one that keeps biting: a linked worktree.** "Already indexed"
+  is about the repo the answer comes FROM, and in a worktree that is the parent checkout,
+  not your tree. Index yours once — see NEVER below.
 - Pass `include_source=true` on `search_symbols`
 - Use `get_symbols` (batch) for 2+ symbols — NEVER sequential `get_symbol`
 - Batch 3+ searches into `codebase_retrieval`
@@ -226,7 +229,13 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 ## NEVER
-- Call `index_folder` if repo is already indexed — file watcher auto-updates
+- Call `index_folder` if repo is already indexed — file watcher auto-updates.
+  **This does NOT apply when your CWD is a linked git worktree.** Auto-indexing deliberately
+  refuses to index a worktree and defers to the parent checkout, so `index_status` reports the
+  PARENT as indexed and healthy while describing files that are not yours. Reading that as
+  "already indexed" and falling back to `rg` is the single most common way agents lose CodeSift
+  in a worktree. Run `index_folder(path=<your worktree>)` once — that is not a re-index, it is
+  the first index of a repo that has none.
 - Call `list_repos` in single-repo sessions — repo auto-resolves from CWD
 - Use manual Edit on multiple files for rename — use `rename_symbol`
 - Read entire file just to get a return type — use `get_type_info`

package/rules/gemini.md CHANGED Viewed

@@ -218,7 +218,10 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 - Use `semantic_search` or `codebase_retrieval(type:"semantic")` for conceptual questions
 - Use `trace_route` FIRST for any API endpoint — NEVER multiple `search_text` + `trace_call_chain`
 - Use `detect_communities` BEFORE `get_knowledge_map` — NEVER `knowledge_map` without communities first
-- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s)
+- Use `index_file(path)` after editing — NEVER `index_folder` (9ms vs 3-8s).
+  **Exception, and it is the one that keeps biting: a linked worktree.** "Already indexed"
+  is about the repo the answer comes FROM, and in a worktree that is the parent checkout,
+  not your tree. Index yours once — see NEVER below.
 - Pass `include_source=true` on `search_symbols`
 - Use `get_symbols` (batch) for 2+ symbols — NEVER sequential `get_symbol`
 - Batch 3+ searches into `codebase_retrieval`
@@ -227,7 +230,13 @@ The server appends hint codes to responses to guide tool usage. Act on them imme
 ## NEVER
-- Call `index_folder` if repo is already indexed — file watcher auto-updates
+- Call `index_folder` if repo is already indexed — file watcher auto-updates.
+  **This does NOT apply when your CWD is a linked git worktree.** Auto-indexing deliberately
+  refuses to index a worktree and defers to the parent checkout, so `index_status` reports the
+  PARENT as indexed and healthy while describing files that are not yours. Reading that as
+  "already indexed" and falling back to `rg` is the single most common way agents lose CodeSift
+  in a worktree. Run `index_folder(path=<your worktree>)` once — that is not a re-index, it is
+  the first index of a repo that has none.
 - Call `list_repos` in single-repo sessions — repo auto-resolves from CWD
 - Use manual Edit on multiple files for rename — use `rename_symbol`
 - Read entire file just to get a return type — use `get_type_info`