codesift-mcp 0.13.1 → 0.15.0

package/dist/tools/index-tools/state.js

@@ -2,5 +2,58 @@ export const activeWatchers = new Map();
 export const bm25Indexes = new Map();
 export const codeIndexes = new Map();
 export const embeddingCaches = new Map();
+export const embeddingCacheGenerations = new Map();
+export const embeddingCacheSources = new Map();
+export function invalidateEmbeddingCache(cacheKey) {
+    embeddingCaches.delete(cacheKey);
+    embeddingCacheSources.delete(cacheKey);
+    embeddingCacheGenerations.set(cacheKey, (embeddingCacheGenerations.get(cacheKey) ?? 0) + 1);
+}
+/** Compare and publish synchronously so invalidation cannot interleave with the set. */
+export function cacheEmbeddingIfGenerationCurrent(cacheKey, generation, embeddings, source) {
+    if ((embeddingCacheGenerations.get(cacheKey) ?? 0) !== generation)
+        return false;
+    embeddingCaches.set(cacheKey, embeddings);
+    if (source)
+        embeddingCacheSources.set(cacheKey, source);
+    return true;
+}
 export const lastFullIndexAt = new Map();
+/**
+ * Chunk vectors share `embeddingCaches` under a DERIVED key, so this is the one
+ * place it is spelled — see {@link invalidateEmbeddingCaches} for why that matters.
+ */
+export function chunkCacheKey(repoName) {
+    return `${repoName}:chunks`;
+}
+/**
+ * Drop every resident embedding map belonging to a repo — symbols AND chunks.
+ *
+ * The obvious `embeddingCaches.delete(repoName)` evicts only half of what it
+ * appears to, because chunk vectors are stored under `<repo>:chunks`. Every
+ * invalidation site did exactly that: re-indexing a file, the watcher seeing a
+ * change, `invalidate_cache`, and repo removal all left the chunk vectors behind.
+ *
+ * In a long-lived process — the launchd daemon, or a stdio session that outlives
+ * a re-index — chunk-level semantic search then answered from PRE-REINDEX vectors
+ * for the rest of that process's life. `loadChunks` re-reads the rewritten text
+ * from disk on every query while the vectors stayed frozen, and a chunk id is
+ * `<repo>:<file>:<startLine>`, so an edited chunk keeps its id and gets scored by
+ * its stale vector; chunks in newly added files are missing from the cache
+ * entirely. No error, no signal, and symbol search stays correct throughout —
+ * which is exactly what made it invisible.
+ *
+ * This is a live definition rather than a comment on five call sites because the
+ * bug was that five call sites each independently forgot the same thing.
+ */
+export function invalidateEmbeddingCaches(repoName) {
+    // Delegates to the generation-aware single-key form rather than deleting directly. Two
+    // invalidation mechanisms landed here from separate branches — a plain delete (symbols AND
+    // chunks) and a generation bump (one key, so a concurrent load cannot republish what was just
+    // invalidated). Keeping both as independent code paths would mean a repo removed through this
+    // function never bumps its generation, and an in-flight load could put the old map back after
+    // the caches were cleared. One mechanism, called twice.
+    invalidateEmbeddingCache(repoName);
+    invalidateEmbeddingCache(chunkCacheKey(repoName));
+}
 //# sourceMappingURL=state.js.map

package/dist/tools/index-tools/state.js.map

@@ -1 +1 @@
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+{"version":3,"file":"state.js","sourceRoot":"","sources":["../../../src/tools/index-tools/state.ts"],"names":[],"mappings":"AAIA,MAAM,CAAC,MAAM,cAAc,GAAG,IAAI,GAAG,EAAqB,CAAC;AAC3D,MAAM,CAAC,MAAM,WAAW,GAAG,IAAI,GAAG,EAAqB,CAAC;AACxD,MAAM,CAAC,MAAM,WAAW,GAAG,IAAI,GAAG,EAAqB,CAAC;AACxD,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,GAAG,EAAqC,CAAC;AAC5E,MAAM,CAAC,MAAM,yBAAyB,GAAG,IAAI,GAAG,EAAkB,CAAC;AACnE,MAAM,CAAC,MAAM,qBAAqB,GAAG,IAAI,GAAG,EAAkB,CAAC;AAE/D,MAAM,UAAU,wBAAwB,CAAC,QAAgB;IACvD,eAAe,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;IACjC,qBAAqB,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;IACvC,yBAAyB,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,yBAAyB,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AAC9F,CAAC;AAED,wFAAwF;AACxF,MAAM,UAAU,iCAAiC,CAC/C,QAAgB,EAChB,UAAkB,EAClB,UAAqC,EACrC,MAAe;IAEf,IAAI,CAAC,yBAAyB,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,UAAU;QAAE,OAAO,KAAK,CAAC;IAChF,eAAe,CAAC,GAAG,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;IAC1C,IAAI,MAAM;QAAE,qBAAqB,CAAC,GAAG,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACxD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,GAAG,EAAkB,CAAC;AAEzD;;;GAGG;AACH,MAAM,UAAU,aAAa,CAAC,QAAgB;IAC5C,OAAO,GAAG,QAAQ,SAAS,CAAC;AAC9B,CAAC;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,MAAM,UAAU,yBAAyB,CAAC,QAAgB;IACxD,uFAAuF;IACvF,2FAA2F;IAC3F,8FAA8F;IAC9F,8FAA8F;IAC9F,8FAA8F;IAC9F,wDAAwD;IACxD,wBAAwB,CAAC,QAAQ,CAAC,CAAC;IACnC,wBAAwB,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,CAAC;AACpD,CAAC"}

package/dist/tools/index-tools/types.d.ts

@@ -23,5 +23,14 @@ export interface IndexFolderResult {
     reason?: string;
     last_indexed?: string;
     hint?: string;
+    /**
+     * Set when this index was COPIED from a parent checkout rather than parsed, naming the parent it
+     * came from. A linked worktree differs from its parent by a handful of files (measured: 11 of
+     * 14,405), so parsing the tree to discover that is the entire cost of indexing paid for almost
+     * nothing. Its presence is also the honest answer to "why was this so fast".
+     */
+    seeded_from?: string;
+    /** Files re-parsed after a seed to bring it from the parent's commit to this tree's HEAD. */
+    files_reparsed?: number;
 }
 //# sourceMappingURL=types.d.ts.map

package/dist/tools/index-tools/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/tools/index-tools/types.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB;;;;;;;OAOG;IACH,MAAM,CAAC,EAAE,SAAS,GAAG,kBAAkB,CAAC;IACxC;;;;;OAKG;IACH,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd;;;;;OAKG;IACH,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,6FAA6F;IAC7F,cAAc,CAAC,EAAE,MAAM,CAAC;CACzB"}

package/dist/tools/index-tools/watcher.js

@@ -4,7 +4,7 @@ import { startWatcher, stopWatcher } from "../../storage/watcher.js";
 import { loadConfig } from "../../config.js";
 import { onFileChanged as scanOnChanged, onFileDeleted as scanOnDeleted, scanFileForSecrets } from "../secret-scan-shared.js";
 import { parseOneFile } from "./parse.js";
-import { activeWatchers, bm25Indexes, codeIndexes, embeddingCaches } from "./state.js";
+import { activeWatchers, bm25Indexes, codeIndexes, invalidateEmbeddingCaches } from "./state.js";
 const DEFAULT_MAX_WATCHERS = 8;
 function getMaxWatchers() {
     const env = process.env.CODESIFT_MAX_WATCHERS;
@@ -105,7 +105,7 @@ async function handleFileChange(repoRoot, repoName, indexPath, relativeFile) {
     // Invalidate caches — lazy rebuild on next query via getBM25Index()
     bm25Indexes.delete(repoName);
     codeIndexes.delete(repoName);
-    embeddingCaches.delete(repoName);
+    invalidateEmbeddingCaches(repoName);
 }
 /**
  * Handle a file deletion event from the watcher.
@@ -116,7 +116,7 @@ async function handleFileDelete(repoRoot, repoName, indexPath, relativeFile) {
     // Invalidate caches — lazy rebuild on next query via getBM25Index()
     bm25Indexes.delete(repoName);
     codeIndexes.delete(repoName);
-    embeddingCaches.delete(repoName);
+    invalidateEmbeddingCaches(repoName);
     scanOnDeleted(repoName, relativeFile);
     // Invalidate Hono model cache
     try {

package/dist/tools/index-tools/watcher.js.map

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package/dist/tools/index-tools/worktree-seed.d.ts

@@ -0,0 +1,44 @@
+export interface SeedResult {
+    seeded: boolean;
+    /** Why the seed was declined. Present exactly when `seeded` is false. */
+    reason?: string;
+    parent_repo?: string;
+    files?: number;
+    symbols?: number;
+    /** The commit the seeded content actually describes — the parent's, not the worktree's. */
+    seeded_at_commit?: string | null;
+    elapsed_ms?: number;
+}
+/**
+ * Seed `worktreeRoot`'s index from its parent checkout's, if that is possible and safe.
+ *
+ * Every refusal returns `{seeded: false, reason}` rather than throwing: the caller's fallback is a
+ * full index, which is slower but always correct. A seed that is wrong is far worse than a seed
+ * that did not happen — the failure mode would be an index that looks complete and describes
+ * another tree, which is exactly the confusion this feature exists to end.
+ */
+export declare function seedWorktreeIndexFromParent(worktreeRoot: string, worktreeName: string, worktreeIndexPath: string): Promise<SeedResult>;
+/** Size of the parent index, for deciding whether a seed is even worth reporting. */
+export declare function parentIndexBytes(parentDbPath: string): number;
+export interface CatchUpResult {
+    caught_up: boolean;
+    reason?: string;
+    updated?: number;
+    removed?: number;
+    changed_total?: number;
+    head?: string;
+}
+/**
+ * Bring a freshly seeded worktree index from the parent's commit to this tree's actual state.
+ *
+ * Covers three things a plain `git diff <a>..<b>` does not, each of which would otherwise leave the
+ * index quietly describing the parent:
+ *
+ *  - **Deletions.** `--diff-filter=ACMR` excludes them by design, so a file removed on this branch
+ *    would keep its parent's symbols forever — searchable, and gone from disk.
+ *  - **Uncommitted work.** A worktree is usually mid-change; its HEAD is not what is on disk.
+ *  - **Untracked files.** New files are the single most likely thing an agent wants to find in the
+ *    tree it is working in, and they appear in no commit diff at all.
+ */
+export declare function catchUpSeededWorktree(worktreeRoot: string, repoName: string, fromCommit: string | null): Promise<CatchUpResult>;
+//# sourceMappingURL=worktree-seed.d.ts.map

package/dist/tools/index-tools/worktree-seed.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/index-tools/worktree-seed.js

@@ -0,0 +1,302 @@
+/**
+ * Build a linked worktree's index by copying its parent checkout's index, instead of walking and
+ * parsing the tree from scratch.
+ *
+ * A linked worktree is nearly the same content as the checkout it came from. Measured on
+ * tgm-survey-platform: the parent index holds 14,891 files, one worktree holds 14,405, and they
+ * differ by **eleven** — 0.08%. That repo has 16 worktrees. Parsing 14,405 files to discover 11
+ * differences is the whole cost of indexing paid to learn almost nothing.
+ *
+ * The copy itself is cheap and the numbers are not close: `VACUUM INTO` moved 50,000 rows in 10 ms
+ * and the id rewrite took 30 ms, against minutes for a full parse of a repo that size.
+ *
+ * ---------------------------------------------------------------------------
+ * Two steps, and the second is why the first is safe
+ * ---------------------------------------------------------------------------
+ *
+ * `seedWorktreeIndexFromParent` copies, and records the PARENT's commit — deliberately, because
+ * that is the commit the copied content actually describes. Claiming the worktree's HEAD would make
+ * every later diff start from a state the index does not match.
+ *
+ * `catchUpSeededWorktree` then walks that gap: committed divergence, uncommitted work, untracked
+ * files and deletions, applied file by file.
+ *
+ * The first draft delegated the second step to `ensureIndexFresh`, which already diffs from
+ * `last_git_commit` — appealingly, since it avoids a second differ. It was wrong, and measurably:
+ * that function falls back to a FULL index above `MAX_DIFF_FILES` (50), a threshold weighed against
+ * a cheap incremental pass, not against parsing 14,226 files. A worktree that differed by 65 files
+ * therefore took ten minutes instead of milliseconds — the whole feature undone by a constant
+ * borrowed from a different question. It also excludes deletions by design (`--diff-filter=ACMR`)
+ * and never looks at untracked files, both of which matter far more here than in its own use.
+ */
+import { existsSync, statSync } from "node:fs";
+import { execFileSync } from "node:child_process";
+import { join } from "node:path";
+import { rename, unlink } from "node:fs/promises";
+import { getRepo, registerRepo, getRepoName } from "../../storage/registry.js";
+import { findWorkingTree, canonicalPath } from "../../utils/worktree.js";
+import { loadConfig } from "../../config.js";
+/** SQLite string literal. Double-quoting would make the path an IDENTIFIER and fail. */
+function sqlLiteral(value) {
+    return `'${value.replace(/'/g, "''")}'`;
+}
+/**
+ * Seed `worktreeRoot`'s index from its parent checkout's, if that is possible and safe.
+ *
+ * Every refusal returns `{seeded: false, reason}` rather than throwing: the caller's fallback is a
+ * full index, which is slower but always correct. A seed that is wrong is far worse than a seed
+ * that did not happen — the failure mode would be an index that looks complete and describes
+ * another tree, which is exactly the confusion this feature exists to end.
+ */
+export async function seedWorktreeIndexFromParent(worktreeRoot, worktreeName, worktreeIndexPath) {
+    const started = Date.now();
+    const tree = findWorkingTree(worktreeRoot);
+    if (!tree?.linked || !tree.mainRoot) {
+        return { seeded: false, reason: "not a linked worktree" };
+    }
+    if (!existsSync(tree.mainRoot)) {
+        return { seeded: false, reason: `parent checkout is gone (${tree.mainRoot})` };
+    }
+    const config = loadConfig();
+    const parentName = getRepoName(tree.mainRoot);
+    const parent = await getRepo(config.registryPath, parentName);
+    if (!parent) {
+        return { seeded: false, reason: `parent ${parentName} is not indexed` };
+    }
+    // Compare CANONICAL paths. `findWorkingTree` resolves symlinks and the registry stores whatever
+    // the caller passed, so on macOS a repo under /var (a symlink to /private/var) compares unequal to
+    // itself and every such worktree would silently fall back to a full parse. Caught by a test whose
+    // temp dirs live exactly there.
+    if (canonicalPath(parent.root) !== canonicalPath(tree.mainRoot)) {
+        // The registry entry under that name describes a different directory. Seeding from it would
+        // copy an index of some other tree — the precise error this whole feature is meant to prevent.
+        return {
+            seeded: false,
+            reason: `parent entry ${parentName} points at ${parent.root}, not ${tree.mainRoot}`,
+        };
+    }
+    const { sqlitePathFor } = await import("../../storage/index-store.js");
+    const parentDb = sqlitePathFor(parent.index_path);
+    const targetDb = sqlitePathFor(worktreeIndexPath);
+    if (!existsSync(parentDb)) {
+        return { seeded: false, reason: "parent index is not in the SQLite backend" };
+    }
+    const { isSqliteAvailable } = await import("../../storage/sqlite/runtime.js");
+    if (!(await isSqliteAvailable())) {
+        return { seeded: false, reason: "node:sqlite unavailable (Node < 22.5)" };
+    }
+    // Write to a temp sibling and rename, so an interrupted seed never leaves a half-copied database
+    // sitting at the path the registry is about to point at.
+    const tempDb = `${targetDb}.seeding.${process.pid}`;
+    try {
+        if (existsSync(tempDb))
+            await unlink(tempDb);
+        const { DatabaseSync } = await import("node:sqlite");
+        // Read-only source: this runs while the daemon and other agents may hold the parent open.
+        // VACUUM INTO takes a consistent snapshot and refuses to run inside a transaction, which is
+        // what makes it safe to point at a database somebody else is writing.
+        const source = new DatabaseSync(`file:${parentDb}?mode=ro`, { open: true });
+        try {
+            source.exec(`VACUUM INTO ${sqlLiteral(tempDb)}`);
+        }
+        finally {
+            source.close();
+        }
+        const copy = new DatabaseSync(tempDb, { open: true });
+        let files = 0;
+        let symbols = 0;
+        try {
+            // A symbol id is `<repo>:<file>:<name>:<line>` (parser/symbol-utils.ts), so every id in the
+            // copy names the PARENT repo. Rewriting the prefix by length is exact where a `replace()`
+            // would not be: a file path may legitimately contain the parent's name as a substring.
+            //
+            // Safe as a bulk UPDATE because v2 dropped the PRIMARY KEY on `symbols.id` — ids are not
+            // unique (TypeScript's type and value namespaces put two on one line), so there is no
+            // conflict to resolve.
+            const oldPrefix = `${parent.name}:`;
+            const newPrefix = `${worktreeName}:`;
+            copy.exec("BEGIN IMMEDIATE");
+            copy.prepare("UPDATE symbols SET id = ? || substr(id, ?)").run(newPrefix, oldPrefix.length + 1);
+            copy.prepare("INSERT INTO meta (key, value) VALUES ('repo', ?) ON CONFLICT(key) DO UPDATE SET value = excluded.value")
+                .run(worktreeName);
+            copy.prepare("INSERT INTO meta (key, value) VALUES ('root', ?) ON CONFLICT(key) DO UPDATE SET value = excluded.value")
+                .run(worktreeRoot);
+            copy.prepare("INSERT INTO meta (key, value) VALUES ('updated_at', ?) ON CONFLICT(key) DO UPDATE SET value = excluded.value")
+                .run(String(Date.now()));
+            copy.exec("COMMIT");
+            files = copy.prepare("SELECT COUNT(*) AS c FROM files").get().c;
+            symbols = copy.prepare("SELECT COUNT(*) AS c FROM symbols").get().c;
+        }
+        catch (err) {
+            try {
+                copy.exec("ROLLBACK");
+            }
+            catch { /* not in a transaction */ }
+            throw err;
+        }
+        finally {
+            copy.close();
+        }
+        if (files === 0) {
+            // An empty parent index is not worth seeding from, and would look like a successful index of
+            // a repo with no files — indistinguishable from a walk that found nothing.
+            await unlink(tempDb).catch(() => undefined);
+            return { seeded: false, reason: "parent index is empty" };
+        }
+        await rename(tempDb, targetDb);
+        // `last_git_commit` is the parent's, deliberately: it is the commit the copied content
+        // describes. ensureIndexFresh diffs from here to the worktree's HEAD.
+        await registerRepo(config.registryPath, {
+            name: worktreeName,
+            root: worktreeRoot,
+            index_path: worktreeIndexPath,
+            file_count: files,
+            symbol_count: symbols,
+            last_git_commit: parent.last_git_commit ?? null,
+            indexed_at: Date.now(),
+        });
+        return {
+            seeded: true,
+            parent_repo: parent.name,
+            files,
+            symbols,
+            seeded_at_commit: parent.last_git_commit ?? null,
+            elapsed_ms: Date.now() - started,
+        };
+    }
+    catch (err) {
+        await unlink(tempDb).catch(() => undefined);
+        const message = err instanceof Error ? err.message : String(err);
+        return { seeded: false, reason: `copy failed: ${message}` };
+    }
+}
+/** Size of the parent index, for deciding whether a seed is even worth reporting. */
+export function parentIndexBytes(parentDbPath) {
+    try {
+        return statSync(parentDbPath).size;
+    }
+    catch {
+        return 0;
+    }
+}
+/**
+ * Above this many differing files, re-parsing the whole tree is genuinely the better trade and the
+ * caller should fall back.
+ *
+ * Deliberately far above `ensureIndexFresh`'s `MAX_DIFF_FILES` of 50, because the alternative is
+ * different. There, 50 is weighed against a cheap incremental pass over an index that is already
+ * correct. Here it is weighed against parsing 14,226 files from scratch — measured: delegating a
+ * 65-file catch-up to that 50-file threshold turned a seed that took milliseconds into a ten-minute
+ * full index, which is the entire feature undone by a constant borrowed from a different question.
+ */
+const MAX_CATCHUP_FILES = 3000;
+function git(args, cwd) {
+    try {
+        return execFileSync("git", args, { cwd, encoding: "utf-8", timeout: 15_000 });
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * Bring a freshly seeded worktree index from the parent's commit to this tree's actual state.
+ *
+ * Covers three things a plain `git diff <a>..<b>` does not, each of which would otherwise leave the
+ * index quietly describing the parent:
+ *
+ *  - **Deletions.** `--diff-filter=ACMR` excludes them by design, so a file removed on this branch
+ *    would keep its parent's symbols forever — searchable, and gone from disk.
+ *  - **Uncommitted work.** A worktree is usually mid-change; its HEAD is not what is on disk.
+ *  - **Untracked files.** New files are the single most likely thing an agent wants to find in the
+ *    tree it is working in, and they appear in no commit diff at all.
+ */
+export async function catchUpSeededWorktree(worktreeRoot, repoName, fromCommit) {
+    const head = git(["rev-parse", "HEAD"], worktreeRoot)?.trim();
+    if (!head)
+        return { caught_up: false, reason: "not a git checkout" };
+    if (!fromCommit)
+        return { caught_up: false, reason: "parent index records no commit" };
+    const changed = new Set();
+    const removed = new Set();
+    if (fromCommit !== head) {
+        const diff = git(["diff", "--name-status", `${fromCommit}..${head}`], worktreeRoot);
+        if (diff === null) {
+            // The parent's commit is unreachable from here — a rebase, a squash, or a worktree on an
+            // unrelated branch. Nothing can be diffed against it, so the seed cannot be trusted to be a
+            // near-match and the caller must do the real work.
+            return { caught_up: false, reason: `commit ${fromCommit.slice(0, 12)} unreachable from HEAD` };
+        }
+        for (const line of diff.split("\n")) {
+            if (!line.trim())
+                continue;
+            const [status, ...paths] = line.split("\t");
+            const target = paths[paths.length - 1];
+            if (!target || !status)
+                continue;
+            if (status.startsWith("D"))
+                removed.add(target);
+            else
+                changed.add(target);
+            // A rename is a delete plus an add; the old path must leave the index.
+            if (status.startsWith("R") && paths.length > 1 && paths[0])
+                removed.add(paths[0]);
+        }
+    }
+    // Working tree on top of HEAD: modified, staged, and untracked alike.
+    const status = git(["status", "--porcelain", "--untracked-files=all"], worktreeRoot);
+    if (status !== null) {
+        for (const line of status.split("\n")) {
+            if (line.length < 4)
+                continue;
+            const code = line.slice(0, 2);
+            const path = line.slice(3).trim();
+            if (!path)
+                continue;
+            if (code.includes("D"))
+                removed.add(path);
+            else
+                changed.add(path);
+        }
+    }
+    for (const path of removed)
+        changed.delete(path);
+    const total = changed.size + removed.size;
+    if (total > MAX_CATCHUP_FILES) {
+        return { caught_up: false, reason: `${total} files differ (> ${MAX_CATCHUP_FILES})`, changed_total: total };
+    }
+    const { indexFile } = await import("./file-indexer.js");
+    const { removeFileFromIndex } = await import("../../storage/index-store.js");
+    const { getRepo: readRepo } = await import("../../storage/registry.js");
+    const config = loadConfig();
+    const meta = await readRepo(config.registryPath, repoName);
+    let updated = 0;
+    for (const rel of changed) {
+        try {
+            await indexFile(join(worktreeRoot, rel));
+            updated++;
+        }
+        catch {
+            // Unparseable, binary, filtered by the walker's rules, or deleted between the diff and now.
+            // Not an error: the file simply has no place in the index.
+        }
+    }
+    let removedCount = 0;
+    if (meta) {
+        for (const rel of removed) {
+            try {
+                await removeFileFromIndex(meta.index_path, rel);
+                removedCount++;
+            }
+            catch {
+                // Not in the index to begin with.
+            }
+        }
+    }
+    const { updateRepoMeta } = await import("../../storage/registry.js");
+    await updateRepoMeta(config.registryPath, repoName, {
+        last_git_commit: head,
+        updated_at: Date.now(),
+    });
+    return { caught_up: true, updated, removed: removedCount, changed_total: total, head };
+}
+//# sourceMappingURL=worktree-seed.js.map

package/dist/tools/index-tools/worktree-seed.js.map

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package/dist/tools/index-tools.d.ts

@@ -1,9 +1,9 @@
 import { indexFolder, resetIndexFolderRedundancyForTesting, type IndexFolderResult } from "./index-tools/folder-indexer.js";
 import { indexFile, clearLastIndexedStateForTesting, ensureIndexFresh, resetFreshnessCache } from "./index-tools/file-indexer.js";
-import { listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting, type RepoSummary } from "./index-tools/registry.js";
+import { listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getIndexSummary, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting, type RepoSummary } from "./index-tools/registry.js";
 import { embedSymbols } from "./index-tools/parse.js";
 import { drainLegacyHashQueue, ASTRO_LOCK_FILENAME, EXTRACTOR_VERSIONS_FILENAME, checkAstroExtractorVersion, type AstroReindexResult } from "./index-tools/snapshots.js";
-export { indexFolder, resetIndexFolderRedundancyForTesting, indexFile, clearLastIndexedStateForTesting, ensureIndexFresh, resetFreshnessCache, listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting, embedSymbols, drainLegacyHashQueue, ASTRO_LOCK_FILENAME, EXTRACTOR_VERSIONS_FILENAME, checkAstroExtractorVersion, };
+export { indexFolder, resetIndexFolderRedundancyForTesting, indexFile, clearLastIndexedStateForTesting, ensureIndexFresh, resetFreshnessCache, listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getIndexSummary, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting, embedSymbols, drainLegacyHashQueue, ASTRO_LOCK_FILENAME, EXTRACTOR_VERSIONS_FILENAME, checkAstroExtractorVersion, };
 export type { IndexFolderResult, RepoSummary, AstroReindexResult };
 export declare function indexRepo(url: string, options?: {
     branch?: string | undefined;

package/dist/tools/index-tools.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index-tools.d.ts","sourceRoot":"","sources":["../../src/tools/index-tools.ts"],"names":[],"mappings":"AAMA,OAAO,EAAE,WAAW,EAAE,oCAAoC,EAAE,KAAK,iBAAiB,EAAE,MAAM,iCAAiC,CAAC;AAC5H,OAAO,EAAE,SAAS,EAAE,+BAA+B,EAAE,gBAAgB,EAAE,mBAAmB,EAAE,MAAM,+BAA+B,CAAC;AAClI,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,iBAAiB,EAAE,oBAAoB,EAAE,+BAA+B,EAAE,6BAA6B,EAAE,kCAAkC,EAAE,KAAK,WAAW,EAAE,MAAM,2BAA2B,CAAC;AACtR,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,2BAA2B,EAAE,0BAA0B,EAAE,KAAK,kBAAkB,EAAE,MAAM,4BAA4B,CAAC;AAczK,OAAO,EACL,WAAW,EACX,oCAAoC,EACpC,SAAS,EACT,+BAA+B,EAC/B,gBAAgB,EAChB,mBAAmB,EACnB,YAAY,EACZ,eAAe,EACf,YAAY,EACZ,YAAY,EACZ,eAAe,EACf,iBAAiB,EACjB,oBAAoB,EACpB,+BAA+B,EAC/B,6BAA6B,EAC7B,kCAAkC,EAClC,YAAY,EACZ,oBAAoB,EACpB,mBAAmB,EACnB,2BAA2B,EAC3B,0BAA0B,GAC3B,CAAC;AACF,YAAY,EAAE,iBAAiB,EAAE,WAAW,EAAE,kBAAkB,EAAE,CAAC;AAEnE,wBAAsB,SAAS,CAC7B,GAAG,EAAE,MAAM,EACX,OAAO,CAAC,EAAE;IACR,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC5B,aAAa,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;CACtC,GACA,OAAO,CAAC,iBAAiB,CAAC,CAgE5B;AAED;;;;;;;;;;GAUG;AAEH;;;;mEAImE;AACnE,wBAAsB,yBAAyB,IAAI,OAAO,CAAC,IAAI,CAAC,CAU/D"}

package/dist/tools/index-tools.js

@@ -6,14 +6,14 @@ import { loadConfig } from "../config.js";
 import { stopWatcher } from "../storage/watcher.js";
 import { indexFolder, resetIndexFolderRedundancyForTesting } from "./index-tools/folder-indexer.js";
 import { indexFile, clearLastIndexedStateForTesting, ensureIndexFresh, resetFreshnessCache } from "./index-tools/file-indexer.js";
-import { listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting } from "./index-tools/registry.js";
+import { listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getIndexSummary, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting } from "./index-tools/registry.js";
 import { embedSymbols } from "./index-tools/parse.js";
 import { drainLegacyHashQueue, ASTRO_LOCK_FILENAME, EXTRACTOR_VERSIONS_FILENAME, checkAstroExtractorVersion } from "./index-tools/snapshots.js";
-import { activeWatchers, bm25Indexes, codeIndexes, embeddingCaches } from "./index-tools/state.js";
+import { activeWatchers, bm25Indexes, codeIndexes, embeddingCaches, embeddingCacheGenerations, embeddingCacheSources, } from "./index-tools/state.js";
 const GIT_CLONE_TIMEOUT_MS = 120_000;
 const GIT_CHECKOUT_TIMEOUT_MS = 30_000;
 const GIT_PULL_TIMEOUT_MS = 60_000;
-export { indexFolder, resetIndexFolderRedundancyForTesting, indexFile, clearLastIndexedStateForTesting, ensureIndexFresh, resetFreshnessCache, listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting, embedSymbols, drainLegacyHashQueue, ASTRO_LOCK_FILENAME, EXTRACTOR_VERSIONS_FILENAME, checkAstroExtractorVersion, };
+export { indexFolder, resetIndexFolderRedundancyForTesting, indexFile, clearLastIndexedStateForTesting, ensureIndexFresh, resetFreshnessCache, listAllRepos, invalidateCache, getBM25Index, getCodeIndex, getIndexSummary, getEmbeddingCache, autoIndexCurrentRepo, _cachedEmbeddingReposForTesting, _embeddingLoadCountForTesting, _resetEmbeddingLoadCountForTesting, embedSymbols, drainLegacyHashQueue, ASTRO_LOCK_FILENAME, EXTRACTOR_VERSIONS_FILENAME, checkAstroExtractorVersion, };
 export async function indexRepo(url, options) {
     validateGitUrl(url);
     if (options?.branch) {
@@ -101,6 +101,8 @@ export async function stopAllWatchersForTesting() {
     bm25Indexes.clear();
     codeIndexes.clear();
     embeddingCaches.clear();
+    embeddingCacheGenerations.clear();
+    embeddingCacheSources.clear();
     resetFreshnessCache();
 }
 //# sourceMappingURL=index-tools.js.map

package/dist/tools/index-tools.js.map

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package/dist/tools/nest-ext-tools/graphql.d.ts

@@ -0,0 +1,17 @@
+import type { NestToolError } from "../nest-tools.js";
+export interface NestGraphQLEntry {
+    resolver_class: string;
+    file: string;
+    operation: "Query" | "Mutation" | "Subscription" | "ResolveField";
+    handler: string;
+    return_type?: string;
+}
+export interface NestGraphQLMapResult {
+    entries: NestGraphQLEntry[];
+    errors?: NestToolError[];
+    truncated?: boolean;
+}
+export declare function nestGraphQLMap(repo: string, options?: {
+    max_entries?: number;
+}): Promise<NestGraphQLMapResult>;
+//# sourceMappingURL=graphql.d.ts.map

package/dist/tools/nest-ext-tools/graphql.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"graphql.d.ts","sourceRoot":"","sources":["../../../src/tools/nest-ext-tools/graphql.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AAMtD,MAAM,WAAW,gBAAgB;IAC/B,cAAc,EAAE,MAAM,CAAC;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,OAAO,GAAG,UAAU,GAAG,cAAc,GAAG,cAAc,CAAC;IAClE,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,oBAAoB;IACnC,OAAO,EAAE,gBAAgB,EAAE,CAAC;IAC5B,MAAM,CAAC,EAAE,aAAa,EAAE,CAAC;IACzB,SAAS,CAAC,EAAE,OAAO,CAAC;CACrB;AAED,wBAAsB,cAAc,CAClC,IAAI,EAAE,MAAM,EACZ,OAAO,CAAC,EAAE;IAAE,WAAW,CAAC,EAAE,MAAM,CAAA;CAAE,GACjC,OAAO,CAAC,oBAAoB,CAAC,CAsD/B"}