codesift-mcp 0.12.0 → 0.14.0

package/dist/storage/registry.js.map

@@ -1 +1 @@
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package/dist/storage/shared-embedding-cache.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Key for a piece of text under a specific model.
+ *
+ * The model and dimensions are IN the key: vectors from different models are
+ * not interchangeable, and serving one for the other would silently corrupt
+ * every similarity score rather than fail. sha256 truncated to 128 bits —
+ * collisions at that width are not a practical concern, and the shorter key
+ * halves the file size.
+ */
+export declare function contentKey(model: string, dimensions: number, text: string): string;
+/**
+ * Read the cache into memory once per process.
+ *
+ * Missing file, unreadable line, malformed JSON: all skipped. A cache that
+ * cannot be read must degrade into "compute it again", never into an error —
+ * it is an optimization, and a broken one has to stay invisible.
+ */
+export declare function loadSharedCache(): Promise<Map<string, Float32Array>>;
+/**
+ * Append new vectors. Both the file and the in-memory map are updated, so a
+ * second repo indexed in the same process hits memory rather than disk.
+ */
+export declare function appendSharedCache(entries: Array<{
+    key: string;
+    vec: Float32Array;
+}>): void;
+/** Test-only: forget the in-memory copy so a fresh path is picked up. */
+export declare function _resetSharedCacheForTests(): void;
+//# sourceMappingURL=shared-embedding-cache.d.ts.map

package/dist/storage/shared-embedding-cache.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"shared-embedding-cache.d.ts","sourceRoot":"","sources":["../../src/storage/shared-embedding-cache.ts"],"names":[],"mappings":"AAwCA;;;;;;;;GAQG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAKlF;AAKD;;;;;;GAMG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,CAyB1E;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,KAAK,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,YAAY,CAAA;CAAE,CAAC,GAAG,IAAI,CAgB1F;AAED,yEAAyE;AACzE,wBAAgB,yBAAyB,IAAI,IAAI,CAGhD"}

package/dist/storage/shared-embedding-cache.js

@@ -0,0 +1,120 @@
+import { createHash } from "node:crypto";
+import { existsSync, mkdirSync, appendFileSync, createReadStream } from "node:fs";
+import { createInterface } from "node:readline";
+import { homedir } from "node:os";
+import { join } from "node:path";
+/**
+ * Embeddings keyed by CONTENT, shared across every repository.
+ *
+ * A vector is a pure function of (model, dimensions, text). Nothing about it
+ * belongs to a repository — yet embeddings were stored per repo, so the same
+ * symbol text was sent to the model once per repo that contained it.
+ *
+ * That is not a marginal cost here. A linked worktree is a separate repo to
+ * CodeSift, and its files are usually IDENTICAL to the checkout it came from:
+ * `backlog-wave-1-integration` had 1,799 files and differed from main by zero.
+ * With 40 worktrees registered, the same text was embedded up to 40 times. Half
+ * of the 2M symbols still queued for embedding are worktrees or temp dirs.
+ *
+ * Auto-indexing no longer creates those entries, but an EXPLICIT
+ * `index_folder(path=<worktree>)` still should work — the H19 hint tells agents
+ * to do exactly that when they are working in one. This makes that cheap
+ * instead of forbidden: the second repo containing a given symbol pays a hash
+ * lookup, not a model call.
+ *
+ * Format: ndjson, append-only, one `{k, v}` per line. Append-only because
+ * concurrent writers are the norm (one process per agent window) and appending
+ * a line is the only operation that is safe without a lock. Duplicate keys are
+ * harmless — the last one read wins, and they carry the same value by
+ * construction.
+ */
+/** Bump when the vector layout changes in a way that invalidates old entries. */
+const CACHE_VERSION = 1;
+function cachePath() {
+    const dataDir = process.env["CODESIFT_DATA_DIR"] ?? join(homedir(), ".codesift");
+    return join(dataDir, `shared-embeddings.v${CACHE_VERSION}.ndjson`);
+}
+/**
+ * Key for a piece of text under a specific model.
+ *
+ * The model and dimensions are IN the key: vectors from different models are
+ * not interchangeable, and serving one for the other would silently corrupt
+ * every similarity score rather than fail. sha256 truncated to 128 bits —
+ * collisions at that width are not a practical concern, and the shorter key
+ * halves the file size.
+ */
+export function contentKey(model, dimensions, text) {
+    return createHash("sha256")
+        .update(`${model}\0${dimensions}\0${text}`)
+        .digest("hex")
+        .slice(0, 32);
+}
+let memory = null;
+let loadedFrom = null;
+/**
+ * Read the cache into memory once per process.
+ *
+ * Missing file, unreadable line, malformed JSON: all skipped. A cache that
+ * cannot be read must degrade into "compute it again", never into an error —
+ * it is an optimization, and a broken one has to stay invisible.
+ */
+export async function loadSharedCache() {
+    const path = cachePath();
+    if (memory && loadedFrom === path)
+        return memory;
+    const map = new Map();
+    if (existsSync(path)) {
+        try {
+            const rl = createInterface({ input: createReadStream(path, { encoding: "utf-8" }), crlfDelay: Infinity });
+            for await (const line of rl) {
+                if (!line)
+                    continue;
+                try {
+                    const entry = JSON.parse(line);
+                    if (typeof entry.k === "string" && Array.isArray(entry.v)) {
+                        map.set(entry.k, new Float32Array(entry.v));
+                    }
+                }
+                catch {
+                    // Skip a malformed line rather than abandoning the whole cache.
+                }
+            }
+        }
+        catch {
+            // Unreadable file — behave as if empty.
+        }
+    }
+    memory = map;
+    loadedFrom = path;
+    return map;
+}
+/**
+ * Append new vectors. Both the file and the in-memory map are updated, so a
+ * second repo indexed in the same process hits memory rather than disk.
+ */
+export function appendSharedCache(entries) {
+    if (entries.length === 0)
+        return;
+    const path = cachePath();
+    try {
+        mkdirSync(join(path, ".."), { recursive: true });
+        let payload = "";
+        for (const { key, vec } of entries) {
+            if (memory && !memory.has(key))
+                memory.set(key, vec);
+            payload += JSON.stringify({ k: key, v: Array.from(vec) }) + "\n";
+        }
+        // One append for the batch: fewer syscalls, and a single write is far less
+        // likely to interleave with another process mid-line than many small ones.
+        appendFileSync(path, payload, "utf-8");
+    }
+    catch {
+        // A cache that cannot be written must not fail the indexing run.
+    }
+}
+/** Test-only: forget the in-memory copy so a fresh path is picked up. */
+export function _resetSharedCacheForTests() {
+    memory = null;
+    loadedFrom = null;
+}
+//# sourceMappingURL=shared-embedding-cache.js.map

package/dist/storage/shared-embedding-cache.js.map

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package/dist/storage/sqlite/accessors.d.ts

@@ -0,0 +1,34 @@
+import type { CodeSymbol, FileEntry } from "../../types.js";
+import { type IndexSummary } from "./meta.js";
+/**
+ * One file's `mtime_ms`, without materialising the index.
+ *
+ * `file-indexer.ts` used to parse the whole blob for exactly this value and then
+ * `saveIncremental` parsed it a second time — two full parses of 262 MB to decide whether a
+ * 40-line file had changed.
+ */
+export declare function getFileMtimeSqlite(dbPath: string, filePath: string): Promise<number | undefined>;
+/**
+ * Read an index without constructing its symbols.
+ *
+ * Measured on the real tgm-survey-platform index (240,137 symbols): a full load costs ~1.0 s and
+ * 349 MB of resident heap, essentially all of it building symbol objects. Tools that never touch
+ * `index.symbols` — `index_status` is the clearest, it reports counts it reads from metadata — paid
+ * that in full for nothing.
+ */
+export declare function loadIndexSummarySqlite(dbPath: string): Promise<IndexSummary | null>;
+/** One file's `files[]` entry, without materialising the index. */
+export declare function getFileEntrySqlite(dbPath: string, filePath: string): Promise<FileEntry | undefined>;
+/** Replace one file's symbols (and optionally its files[] entry) in a single transaction. */
+export declare function saveIncrementalSqlite(dbPath: string, updatedFile: string, newSymbols: CodeSymbol[], fileEntry?: FileEntry): Promise<void>;
+/** Drop a deleted file's symbols and its files[] entry. */
+export declare function removeFileFromIndexSqlite(dbPath: string, deletedFile: string): Promise<void>;
+/** All symbols for one file — lets per-file tools skip the whole-index load. */
+export declare function getSymbolsForFileSqlite(dbPath: string, filePath: string): Promise<CodeSymbol[]>;
+/**
+ * Cross-process change counter. SQLite bumps `data_version` when *another* connection
+ * commits, which is the invalidation signal a plain JSON file never had — and the reason an
+ * in-memory index cache becomes safe here despite the hook writing from its own process.
+ */
+export declare function getDataVersion(dbPath: string): Promise<number>;
+//# sourceMappingURL=accessors.d.ts.map

package/dist/storage/sqlite/accessors.d.ts.map

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package/dist/storage/sqlite/accessors.js

@@ -0,0 +1,178 @@
+import { openIndexDb, openReadConnection, readMetaValue, rollbackQuietly, writeMetaValue, } from "./connection.js";
+import { rethrowOperational } from "./errors.js";
+import { readMetaExtras } from "./meta.js";
+import { INSERT_FILE_SQL, INSERT_SYMBOL_SQL, fileEntryToRow, rowToFileEntry, rowToSymbol, symbolToRow, } from "./rows.js";
+/**
+ * Narrow accessors — the reason this backend exists.
+ *
+ * Every function here answers a question WITHOUT materialising the index. Under the JSON backend
+ * each of these cost a full parse of the whole repo's symbols; that is the cost ADR-003 set out to
+ * remove and ADR-004 stage 2 is still working through call site by call site.
+ */
+/**
+ * Run a read against an already-open index, classifying any storage fault it surfaces.
+ *
+ * `openIndexDb` classifies what fails at open time, but corruption and I/O faults frequently only
+ * surface on the first page actually touched — and these accessors are the fast paths precisely
+ * because they touch one row late rather than the whole table early. Without this, a caller using
+ * `isIndexStorageError` (rather than `classifyStorageError`) does not recognise the fault, and the
+ * read falls into the "unexpected error" branch that reports an unindexed repo.
+ */
+function classifyingRead(dbPath, read) {
+    try {
+        return read();
+    }
+    catch (err) {
+        rethrowOperational(err, dbPath);
+    }
+}
+/**
+ * One file's `mtime_ms`, without materialising the index.
+ *
+ * `file-indexer.ts` used to parse the whole blob for exactly this value and then
+ * `saveIncremental` parsed it a second time — two full parses of 262 MB to decide whether a
+ * 40-line file had changed.
+ */
+export async function getFileMtimeSqlite(dbPath, filePath) {
+    const db = await openIndexDb(dbPath);
+    return classifyingRead(dbPath, () => {
+        const row = db.prepare("SELECT mtime_ms FROM files WHERE path = ?").get(filePath);
+        return row?.mtime_ms ?? undefined;
+    });
+}
+/**
+ * Read an index without constructing its symbols.
+ *
+ * Measured on the real tgm-survey-platform index (240,137 symbols): a full load costs ~1.0 s and
+ * 349 MB of resident heap, essentially all of it building symbol objects. Tools that never touch
+ * `index.symbols` — `index_status` is the clearest, it reports counts it reads from metadata — paid
+ * that in full for nothing.
+ */
+export async function loadIndexSummarySqlite(dbPath) {
+    await openIndexDb(dbPath);
+    let reader;
+    let out = null;
+    try {
+        // Same one-transaction rule as `loadIndexSqlite`: files and meta must describe one instant,
+        // or the summary reports a file list from one revision with counts from another.
+        // Bound to a `const` as well as to `reader`: the closure below outlives the narrowing of the
+        // `let`, so reading it through `reader` needed an `as` cast that asserted away an `undefined`
+        // the compiler was right to track. The local carries the non-optional type honestly.
+        const snapshot = await openReadConnection(dbPath);
+        reader = snapshot;
+        snapshot.exec("BEGIN");
+        try {
+            const meta = (key) => readMetaValue(snapshot, key);
+            const repo = meta("repo");
+            const root = meta("root");
+            if (repo === undefined || root === undefined) {
+                snapshot.exec("COMMIT");
+                return null; // genuinely empty — not a fault
+            }
+            // ORDER BY rowid, matching `readTablePaged`'s keyset walk. Without it the two SQLite read
+            // paths could hand back the same files in different orders, so a caller comparing a summary
+            // against a full load would see a difference that is not in the data.
+            const files = snapshot.prepare("SELECT * FROM files ORDER BY rowid").all().map(rowToFileEntry);
+            const counted = snapshot.prepare("SELECT COUNT(*) AS n FROM symbols").get();
+            const summary = {
+                repo,
+                root,
+                files,
+                created_at: Number(meta("created_at") ?? 0),
+                updated_at: Number(meta("updated_at") ?? 0),
+                symbol_count: Number(counted?.n ?? 0),
+                file_count: files.length,
+            };
+            Object.assign(summary, readMetaExtras(meta));
+            snapshot.exec("COMMIT");
+            out = summary;
+        }
+        catch (err) {
+            rollbackQuietly(snapshot);
+            throw err;
+        }
+    }
+    catch (err) {
+        rethrowOperational(err, dbPath);
+    }
+    finally {
+        try {
+            reader?.close();
+        }
+        catch { /* best-effort */ }
+    }
+    return out;
+}
+/** One file's `files[]` entry, without materialising the index. */
+export async function getFileEntrySqlite(dbPath, filePath) {
+    const db = await openIndexDb(dbPath);
+    return classifyingRead(dbPath, () => {
+        const row = db.prepare("SELECT * FROM files WHERE path = ?").get(filePath);
+        return row ? rowToFileEntry(row) : undefined;
+    });
+}
+/** Replace one file's symbols (and optionally its files[] entry) in a single transaction. */
+export async function saveIncrementalSqlite(dbPath, updatedFile, newSymbols, fileEntry) {
+    const db = await openIndexDb(dbPath);
+    if (readMetaValue(db, "repo") === undefined) {
+        throw new Error(`Cannot incrementally update: index not found at ${dbPath}`);
+    }
+    db.exec("BEGIN");
+    try {
+        db.prepare("DELETE FROM symbols WHERE file = ?").run(updatedFile);
+        const insSym = db.prepare(INSERT_SYMBOL_SQL);
+        for (const sym of newSymbols)
+            insSym.run(...symbolToRow(sym));
+        if (fileEntry)
+            db.prepare(INSERT_FILE_SQL).run(...fileEntryToRow(fileEntry));
+        writeMetaValue(db, "updated_at", String(Date.now()));
+        db.exec("COMMIT");
+    }
+    catch (err) {
+        rollbackQuietly(db);
+        rethrowOperational(err, dbPath);
+    }
+}
+/** Drop a deleted file's symbols and its files[] entry. */
+export async function removeFileFromIndexSqlite(dbPath, deletedFile) {
+    const db = await openIndexDb(dbPath);
+    if (readMetaValue(db, "repo") === undefined)
+        return; // nothing to remove
+    db.exec("BEGIN");
+    try {
+        db.prepare("DELETE FROM symbols WHERE file = ?").run(deletedFile);
+        db.prepare("DELETE FROM files WHERE path = ?").run(deletedFile);
+        writeMetaValue(db, "updated_at", String(Date.now()));
+        db.exec("COMMIT");
+    }
+    catch (err) {
+        rollbackQuietly(db);
+        rethrowOperational(err, dbPath);
+    }
+}
+/** All symbols for one file — lets per-file tools skip the whole-index load. */
+export async function getSymbolsForFileSqlite(dbPath, filePath) {
+    const db = await openIndexDb(dbPath);
+    return classifyingRead(dbPath, () => {
+        const repo = readMetaValue(db, "repo");
+        if (repo === undefined)
+            return [];
+        const rows = db
+            .prepare("SELECT * FROM symbols WHERE file = ?")
+            .all(filePath);
+        return rows.map((row) => rowToSymbol(row, repo));
+    });
+}
+/**
+ * Cross-process change counter. SQLite bumps `data_version` when *another* connection
+ * commits, which is the invalidation signal a plain JSON file never had — and the reason an
+ * in-memory index cache becomes safe here despite the hook writing from its own process.
+ */
+export async function getDataVersion(dbPath) {
+    const db = await openIndexDb(dbPath);
+    return classifyingRead(dbPath, () => {
+        const row = db.prepare("PRAGMA data_version").get();
+        return row.data_version;
+    });
+}
+//# sourceMappingURL=accessors.js.map

package/dist/storage/sqlite/accessors.js.map

@@ -0,0 +1 @@
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package/dist/storage/sqlite/connection.d.ts

@@ -0,0 +1,43 @@
+import type { DatabaseSync as DatabaseSyncType } from "node:sqlite";
+/**
+ * ROLLBACK that cannot replace the error that caused it.
+ *
+ * SQLite rolls back automatically on the faults that matter most here — `SQLITE_FULL`,
+ * `SQLITE_IOERR`, `SQLITE_NOMEM`, `SQLITE_INTERRUPT` — so an explicit ROLLBACK in the catch block
+ * then throws `cannot rollback - no transaction is active`, and THAT is what propagates. Verified
+ * on node v24.18.0: a write that failed with `database or disk is full` (errcode 13) arrived at
+ * the caller as a rollback complaint instead, which classifies as nothing at all.
+ *
+ * Losing the transaction is not the risk — SQLite already ended it. Losing the diagnosis is.
+ */
+export declare function rollbackQuietly(db: DatabaseSyncType): void;
+/**
+ * Open (and cache) a connection, creating the schema on first use.
+ *
+ * WAL is the reason this migration solves a problem a sharded JSON layout would not: the MCP
+ * server and the `codesift postindex-file` hook are separate processes writing the same
+ * index, and WAL gives them concurrent readers with a single writer instead of a corruption
+ * window. `busy_timeout` makes a writer wait its turn rather than throwing SQLITE_BUSY when
+ * an agent edits files faster than the previous write settles.
+ */
+export declare function openIndexDb(dbPath: string): Promise<DatabaseSyncType>;
+/** Close one cached connection (tests, and the shutdown path). */
+export declare function closeIndexDb(dbPath: string): void;
+export declare function closeAllIndexDbs(): void;
+/**
+ * Open a second connection for reading only.
+ *
+ * The paged read in `index-io.ts` yields to the event loop between pages, and the cached
+ * connection is shared by every request in this process — so a write landing mid-traversal would
+ * let one `CodeIndex` be assembled out of two different database states. Holding a read
+ * transaction on the SHARED connection cannot fix that: any write arriving during the yield would
+ * hit "cannot start a transaction within a transaction".
+ *
+ * A private connection in WAL mode sees a stable snapshot from `BEGIN` to `COMMIT` regardless of
+ * what other connections commit meanwhile. It costs one open per cold load, which happens once
+ * per process per repo.
+ */
+export declare function openReadConnection(dbPath: string): Promise<DatabaseSyncType>;
+export declare function readMetaValue(db: DatabaseSyncType, key: string): string | undefined;
+export declare function writeMetaValue(db: DatabaseSyncType, key: string, value: string): void;
+//# sourceMappingURL=connection.d.ts.map

package/dist/storage/sqlite/connection.d.ts.map

@@ -0,0 +1 @@
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