codesift-mcp 0.11.0 → 0.13.1

package/dist/tools/status-tools.d.ts

@@ -16,6 +16,16 @@ export interface IndexStatusResult {
         actual_version: string;
         mismatch_detail?: string;
     };
+    /** When the index store exists but could not be read at all — locked, corrupt, permissions.
+     *  Same principle as `stale`, one step further: an agent told "not indexed" will rebuild,
+     *  which is wrong (and destructive) for a database that is merely busy. `indexed` stays
+     *  false because nothing could be read, but this field is what says why. */
+    unreadable?: {
+        reason: "storage_error";
+        /** SQLITE_* or errno code. SQLITE_BUSY is worth retrying; SQLITE_CORRUPT is not. */
+        code: string;
+        message: string;
+    };
 }
 export declare function indexStatus(repo: string): Promise<IndexStatusResult>;
 //# sourceMappingURL=status-tools.d.ts.map

package/dist/tools/status-tools.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"status-tools.d.ts","sourceRoot":"","sources":["../../src/tools/status-tools.ts"],"names":[],"mappings":"AAWA,MAAM,WAAW,iBAAiB;IAChC,OAAO,EAAE,OAAO,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,kBAAkB,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC5C,mBAAmB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC/B,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB;;;+CAG2C;IAC3C,KAAK,CAAC,EAAE;QACN,MAAM,EAAE,4BAA4B,CAAC;QACrC,QAAQ,EAAE,MAAM,CAAC;QACjB,gBAAgB,EAAE,MAAM,CAAC;QACzB,cAAc,EAAE,MAAM,CAAC;QACvB,eAAe,CAAC,EAAE,MAAM,CAAC;KAC1B,CAAC;IACF;;;gFAG4E;IAC5E,UAAU,CAAC,EAAE;QACX,MAAM,EAAE,eAAe,CAAC;QACxB,oFAAoF;QACpF,IAAI,EAAE,MAAM,CAAC;QACb,OAAO,EAAE,MAAM,CAAC;KACjB,CAAC;CACH;AAmBD,wBAAsB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAqD1E"}

package/dist/tools/status-tools.js

@@ -2,10 +2,18 @@ import { getCodeIndex } from "./index-tools.js";
 import { loadConfig } from "../config.js";
 import { resolveRegisteredRepoMeta } from "../storage/registry.js";
 import { loadIndexOrStale } from "../storage/index-store.js";
+import { isIndexStorageError } from "../storage/sqlite-index-store.js";
 import { EXTRACTOR_VERSIONS } from "./index-shared.js";
 // ---------------------------------------------------------------------------
 // Tool implementation
 // ---------------------------------------------------------------------------
+/**
+ * One translation from a storage fault to the reported field.
+ * Three copies of this literal drifted apart is exactly how the code and the type stop agreeing.
+ */
+function toUnreadable(fault) {
+    return { unreadable: { reason: "storage_error", code: fault.code, message: fault.message } };
+}
 const TEXT_STUB_LANGUAGES = new Set([
     "kotlin", "swift", "dart", "scala", "groovy",
     "elixir", "lua", "zig", "nim", "gradle", "sbt",
@@ -14,7 +22,24 @@ export async function indexStatus(repo) {
     // Status check should NOT block on freshness — telemetry showed p99=43s
     // because ensureIndexFresh triggers git-diff + reindex of changed files.
     // Stale-but-fast metadata is the right tradeoff for a status call.
-    const index = await getCodeIndex(repo, { skipFreshness: true });
+    let index;
+    try {
+        index = await getCodeIndex(repo, { skipFreshness: true });
+    }
+    catch (err) {
+        // getCodeIndex throws on an unreadable store so that ordinary tools cannot render a storage
+        // fault as an empty result. This tool is the exception: reporting index health IS its job,
+        // so it describes the fault instead of propagating it — straight from the caught error, with
+        // no second read. Re-probing would hit an already-struggling store again and could observe a
+        // different outcome than the one being reported.
+        if (isIndexStorageError(err)) {
+            return {
+                indexed: false,
+                ...toUnreadable(err),
+            };
+        }
+        throw err;
+    }
     if (!index) {
         // getCodeIndex returns null both for "no index file" and for stale-version
         // mismatches. Disambiguate by reading the index path directly: if the file
@@ -23,9 +48,9 @@ export async function indexStatus(repo) {
         // run index_folder, but agents acting on "stale" can be told the same fix
         // applies AND that some data is still on disk — useful for reasoning about
         // partial coverage during the rebuild.
-        const stale = await detectStale(repo);
-        if (stale)
-            return { indexed: false, stale };
+        const problem = await probeIndexProblem(repo);
+        if (problem)
+            return { indexed: false, ...problem };
         return { indexed: false };
     }
     const languageBreakdown = {};
@@ -47,11 +72,16 @@ export async function indexStatus(repo) {
         result.text_stub_languages = [...stubLangs].sort();
     return result;
 }
-/** Probe the on-disk index for a repo and return stale info if the file exists
- *  but its `extractor_version` snapshot drifted. Returns null when no index file
- *  is registered for the repo (the genuine "never indexed" case). Uses
- *  `resolveRegisteredRepoMeta` so registry resolution stays aligned with `getCodeIndex`. */
-async function detectStale(repo) {
+/** Probe the on-disk index and describe why it did not load: drifted extractor versions, or a
+ *  storage fault. Returns null for the genuine "never indexed" case.
+ *
+ *  It reports `unreadable` as well as `stale` because this path is reachable with a fault: a
+ *  store that read fine a moment ago (so `getCodeIndex` returned null rather than throwing) can
+ *  be locked by the time this probe runs. Falling through to a bare `{indexed:false}` there
+ *  would reintroduce exactly the misdiagnosis this change removes.
+ *
+ *  Uses `resolveRegisteredRepoMeta` so registry resolution stays aligned with `getCodeIndex`. */
+async function probeIndexProblem(repo) {
     const config = loadConfig();
     let result;
     try {
@@ -60,16 +90,27 @@ async function detectStale(repo) {
             return null;
         result = await loadIndexOrStale(resolved.meta.index_path, { ...EXTRACTOR_VERSIONS });
     }
-    catch {
-        return null;
+    catch (err) {
+        if (isIndexStorageError(err)) {
+            return toUnreadable(err);
+        }
+        // Anything else here (registry I/O, an unexpected TypeError) is a live fault. Returning
+        // null would render it as {indexed:false} — an authoritative "nothing indexed" over a
+        // problem nobody can see. Let it propagate.
+        throw err;
+    }
+    if (result?.status === "unreadable") {
+        return toUnreadable(result);
     }
     if (result?.status === "stale") {
         return {
-            reason: "extractor_version_mismatch",
-            language: result.language,
-            expected_version: result.expected_version,
-            actual_version: result.actual_version,
-            ...(result.mismatch_detail ? { mismatch_detail: result.mismatch_detail } : {}),
+            stale: {
+                reason: "extractor_version_mismatch",
+                language: result.language,
+                expected_version: result.expected_version,
+                actual_version: result.actual_version,
+                ...(result.mismatch_detail ? { mismatch_detail: result.mismatch_detail } : {}),
+            },
         };
     }
     return null;

package/dist/tools/status-tools.js.map

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package/dist/tools/workspace-scope-helper.d.ts.map

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package/dist/tools/workspace-scope-helper.js

@@ -1,4 +1,5 @@
 import { getCodeIndex } from "./index-tools.js";
+import { isIndexStorageError } from "../storage/sqlite-index-store.js";
 /** Resolve a `workspace=` argument against the active CodeIndex.
  *  - When `workspace` is provided: look up by exact name or id; return
  *    { error: "unknown_workspace" } if not found.
@@ -11,7 +12,13 @@ export async function resolveWorkspaceScope(repo, workspace, framework) {
     try {
         index = await getCodeIndex(repo, { skipFreshness: true });
     }
-    catch {
+    catch (err) {
+        // Same reason as workspace-tools' getIndexOrEmpty: this feeds the `workspace=` parameter on
+        // framework_audit, nextjs_route_map, nextjs_metadata_audit, analyze_hono_app, nest_audit and
+        // astro_audit. Collapsing a storage fault to null here makes all of them report an empty
+        // workspace set over an index that could not be read.
+        if (isIndexStorageError(err))
+            throw err;
         index = null;
     }
     const workspaces = index?.workspaces;

package/dist/tools/workspace-scope-helper.js.map

@@ -1 +1 @@
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package/dist/tools/workspace-tools.d.ts.map

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package/dist/tools/workspace-tools.js

@@ -3,6 +3,7 @@ import { promisify } from "node:util";
 import { z } from "zod";
 import { getCodeIndex } from "./index-tools.js";
 import { collectImportEdges, buildWorkspaceAliasResolver } from "../utils/import-graph.js";
+import { isIndexStorageError } from "../storage/sqlite-index-store.js";
 const execFileAsync = promisify(execFile);
 // ---------------------------------------------------------------------------
 // Shared helpers
@@ -359,7 +360,14 @@ async function getIndexOrEmpty(repo) {
     try {
         return await getCodeIndex(repo ?? "", { skipFreshness: true });
     }
-    catch {
+    catch (err) {
+        // A storage fault must NOT become "this repo has no workspaces". `getCodeIndex` throws
+        // IndexStorageError for a locked or corrupt index precisely so callers stop rendering it
+        // as an empty result; swallowing it here would put every workspace tool
+        // (list_workspaces, workspace_graph, affected_workspaces, workspace_boundaries) right back
+        // to answering "no workspaces" with full confidence over a database that is merely busy.
+        if (isIndexStorageError(err))
+            throw err;
         return null;
     }
 }

package/dist/tools/workspace-tools.js.map

@@ -1 +1 @@
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package/dist/utils/loopback.d.ts

@@ -0,0 +1,23 @@
+/**
+ * Literal addresses only.
+ *
+ * A prefix test like `/^127\./` reads as loopback for `127.attacker.example` and for
+ * `127.0.0.1@attacker.example` (that `@` is URL userinfo, so the request goes to
+ * `attacker.example`) — either one turns this exemption into a way to post a bearer token to an
+ * attacker-controlled host. `isIP` returns 0 for anything that is not a bare address literal, so
+ * the whole class falls through.
+ *
+ * `localhost` stays exempt. It is resolver-dependent in principle, but anyone who can rewrite
+ * your hosts file already owns the machine, and dropping it would break the common local case in
+ * exchange for a threat this does not mitigate.
+ */
+export declare function isLoopbackHost(host: string): boolean;
+/**
+ * Reject a host string that can smuggle authority into a URL.
+ *
+ * `@` is the dangerous one: `127.0.0.1@evil.example` parses as userinfo + host, so the client
+ * connects to `evil.example` while the string looks local. `/`, `?`, `#` can move the path or
+ * query. None of these belong in a hostname.
+ */
+export declare function assertPlainHost(host: string): void;
+//# sourceMappingURL=loopback.d.ts.map

package/dist/utils/loopback.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"loopback.d.ts","sourceRoot":"","sources":["../../src/utils/loopback.ts"],"names":[],"mappings":"AAeA;;;;;;;;;;;;GAYG;AACH,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAyBpD;AAED;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAQlD"}

package/dist/utils/loopback.js

@@ -0,0 +1,71 @@
+/**
+ * The single definition of "this address does not leave the machine".
+ *
+ * There were three: `server.ts` gated its bind on a 3-string set, `cli/service.ts` had its own
+ * copy of the same 3 strings, and `cli/setup/mcp.ts` had a fuller one (all of 127.0.0.0/8 plus
+ * the IPv4-mapped IPv6 forms). They disagreed, and the disagreement was reachable: binding the
+ * daemon to `127.0.0.2` — a perfectly ordinary loopback alias, the usual way to run two daemons
+ * on one port — was accepted by setup and refused by the server as "non-loopback without a
+ * token". Safe direction, but a deployment that looks valid from one layer and cannot start at
+ * another.
+ *
+ * A predicate that decides whether a credential may travel in plaintext should exist once.
+ */
+import { isIP } from "node:net";
+/**
+ * Literal addresses only.
+ *
+ * A prefix test like `/^127\./` reads as loopback for `127.attacker.example` and for
+ * `127.0.0.1@attacker.example` (that `@` is URL userinfo, so the request goes to
+ * `attacker.example`) — either one turns this exemption into a way to post a bearer token to an
+ * attacker-controlled host. `isIP` returns 0 for anything that is not a bare address literal, so
+ * the whole class falls through.
+ *
+ * `localhost` stays exempt. It is resolver-dependent in principle, but anyone who can rewrite
+ * your hosts file already owns the machine, and dropping it would break the common local case in
+ * exchange for a threat this does not mitigate.
+ */
+export function isLoopbackHost(host) {
+    // Strip brackets only as a matched pair: accepting a lone `[` or `]` let a malformed authority
+    // like `[::1` classify as loopback here while failing later in URL construction.
+    const trimmed = host.trim();
+    const unwrapped = /^\[.*\]$/.test(trimmed) ? trimmed.slice(1, -1) : trimmed;
+    const bare = unwrapped.toLowerCase();
+    if (bare === "localhost")
+        return true;
+    const kind = isIP(bare);
+    if (kind === 4)
+        return bare.startsWith("127."); // 127.0.0.0/8, and isIP proved it is a literal
+    if (kind === 6) {
+        if (bare === "::1" || bare === "0:0:0:0:0:0:0:1")
+            return true;
+        // The IPv4-mapped loopback has two spellings for one address: dotted (`::ffff:127.0.0.1`)
+        // and hex (`::ffff:7f00:1`). Recognising only the dotted form rejected a valid loopback
+        // config in a way nobody would think to diagnose.
+        const mapped = bare.match(/^(?:0*:)*:?ffff:(.+)$/);
+        if (mapped?.[1]) {
+            const tail = mapped[1];
+            if (isIP(tail) === 4)
+                return tail.startsWith("127.");
+            const hex = tail.match(/^([0-9a-f]{1,4}):([0-9a-f]{1,4})$/);
+            if (hex)
+                return parseInt(hex[1], 16) >>> 8 === 0x7f;
+        }
+    }
+    return false;
+}
+/**
+ * Reject a host string that can smuggle authority into a URL.
+ *
+ * `@` is the dangerous one: `127.0.0.1@evil.example` parses as userinfo + host, so the client
+ * connects to `evil.example` while the string looks local. `/`, `?`, `#` can move the path or
+ * query. None of these belong in a hostname.
+ */
+export function assertPlainHost(host) {
+    if (/[@/?#\s]/.test(host)) {
+        throw new Error(`Invalid daemon host ${JSON.stringify(host)}: a host cannot contain '@', '/', '?', '#' or ` +
+            `whitespace. A host like "127.0.0.1@example.com" looks local but sends the request — and ` +
+            `the token — to example.com.`);
+    }
+}
+//# sourceMappingURL=loopback.js.map

package/dist/utils/loopback.js.map

@@ -0,0 +1 @@
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package/dist/utils/walk/filters.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"filters.d.ts","sourceRoot":"","sources":["../../../src/utils/walk/filters.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AA4B9C,eAAO,MAAM,WAAW,aAGtB,CAAC;AAEH,wBAAgB,gBAAgB,IAAI,MAAM,EAAE,CAE3C;AAED,eAAO,MAAM,oBAAoB,EAAE,MAAM,EAQxC,CAAC;AAEF,UAAU,UAAU;IAClB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC;IAC3C,iBAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5D;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,WAAW,GAAG,UAAU,CA+BnF"}

package/dist/utils/walk/filters.js

@@ -1,11 +1,32 @@
 import { extname, relative } from "node:path";
 import picomatch from "picomatch";
-export const IGNORE_DIRS = new Set([
+const ALWAYS_IGNORED = [
     "node_modules", ".git", "dist", "build", "coverage",
     ".codesift", ".next", "__pycache__", ".pytest_cache",
     ".venv", "venv", ".tox", ".mypy_cache", ".turbo",
     "generated", "audit-results", ".backup", "jscpd-report",
     "helpscout_export", ".output", ".pnpm",
+];
+/**
+ * Third-party code that is `node_modules` under a different name — Composer,
+ * Go, Ruby and Rust all install into `vendor/`.
+ *
+ * Measured on real indexes before this was excluded: `tgm-mobi` 44,534 of
+ * 50,006 files (89%, 377 MB), `Mobi3` 89%, `tgm-collect` 10,083 of 11,622
+ * (87%). Two of those sat exactly on the 50,000-file indexing cap, which means
+ * dependency code was not merely slowing things down — it was pushing the
+ * project's own source OUT of the index, silently. Graph tools then walked the
+ * whole vendored tree and hit the 90s tool timeout, so they were unusable on
+ * every PHP project.
+ *
+ * Escape hatch for the rare repo whose `vendor/` really is first-party source:
+ * `CODESIFT_INDEX_VENDOR=1`. Read once at module load, like the other walk
+ * toggles.
+ */
+const VENDOR_DIRS = ["vendor"];
+export const IGNORE_DIRS = new Set([
+    ...ALWAYS_IGNORED,
+    ...(process.env["CODESIFT_INDEX_VENDOR"] === "1" ? [] : VENDOR_DIRS),
 ]);
 export function toIgnorePatterns() {
     return [...IGNORE_DIRS].map((dir) => `**/${dir}/**`);

package/dist/utils/walk/filters.js.map

@@ -1 +1 @@
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+{"version":3,"file":"filters.js","sourceRoot":"","sources":["../../../src/utils/walk/filters.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AAC9C,OAAO,SAAS,MAAM,WAAW,CAAC;AAGlC,MAAM,cAAc,GAAG;IACrB,cAAc,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,UAAU;IACnD,WAAW,EAAE,OAAO,EAAE,aAAa,EAAE,eAAe;IACpD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,aAAa,EAAE,QAAQ;IAChD,WAAW,EAAE,eAAe,EAAE,SAAS,EAAE,cAAc;IACvD,kBAAkB,EAAE,SAAS,EAAE,OAAO;CACvC,CAAC;AAEF;;;;;;;;;;;;;;;GAeG;AACH,MAAM,WAAW,GAAG,CAAC,QAAQ,CAAC,CAAC;AAE/B,MAAM,CAAC,MAAM,WAAW,GAAG,IAAI,GAAG,CAAC;IACjC,GAAG,cAAc;IACjB,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,uBAAuB,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC;CACrE,CAAC,CAAC;AAEH,MAAM,UAAU,gBAAgB;IAC9B,OAAO,CAAC,GAAG,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,KAAK,CAAC,CAAC;AACvD,CAAC;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAa;IAC5C,aAAa;IACb,SAAS;IACT,UAAU;IACV,IAAI;IACJ,SAAS;IACT,SAAS;IACT,aAAa;CACd,CAAC;AAOF,MAAM,UAAU,gBAAgB,CAAC,QAAgB,EAAE,OAAoB;IACrE,IAAI,UAAU,GAAuC,IAAI,CAAC;IAC1D,IAAI,OAAO,CAAC,eAAe,IAAI,OAAO,CAAC,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAClE,IAAI,CAAC;YACH,UAAU,GAAG,SAAS,CAAC,OAAO,CAAC,eAAe,EAAE,EAAE,GAAG,EAAE,IAAI,EAAE,CAAC,CAAC;QACjE,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,CAAC,IAAI,CAAC,6DAA6D,CAAC,CAAC;QAC9E,CAAC;IACH,CAAC;IAED,OAAO;QACL,mBAAmB,CAAC,IAAY;YAC9B,OAAO,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;QACvD,CAAC;QACD,iBAAiB,CAAC,QAAgB,EAAE,IAAY;YAC9C,IAAI,OAAO,CAAC,GAAG,CAAC,wBAAwB,KAAK,GAAG;gBAC5C,oBAAoB,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC;gBAC/D,OAAO,KAAK,CAAC;YACf,CAAC;YAED,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;YAC1B,IAAI,OAAO,CAAC,UAAU,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,EAAE,IAAI,CAAC;gBAAE,OAAO,KAAK,CAAC;YAEvE,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;YAC7C,IAAI,OAAO,CAAC,YAAY,IAAI,OAAO,CAAC,YAAY,CAAC,MAAM,GAAG,CAAC;gBACvD,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC;gBACvE,OAAO,KAAK,CAAC;YACf,CAAC;YACD,OAAO,CAAC,UAAU,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC;QAC7C,CAAC;KACF,CAAC;AACJ,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "codesift-mcp",
-  "version": "0.11.0",
+  "version": "0.13.1",
   "description": "MCP server for code intelligence — 146 tools for symbol search, call graph, semantic search, route tracing, community detection, LSP bridge, secret detection, conversation search, and Hono framework intelligence",
   "license": "BSL-1.1",
   "author": "Greg Laskowski",
@@ -32,7 +32,10 @@
   },
   "dependencies": {
     "@manypkg/get-packages": "^3.1.0",
+    "@modelcontextprotocol/core": "^2.0.0",
+    "@modelcontextprotocol/node": "^2.0.0",
     "@modelcontextprotocol/sdk": "^1.0.0",
+    "@modelcontextprotocol/server": "^2.0.0",
     "@mrleebo/prisma-ast": "^0.15.0",
     "@parcel/watcher": "^2.5.6",
     "@sanity-labs/secret-scan": "^1.1.0",