codesift-mcp 0.11.0 → 0.12.0

package/dist/server.js

@@ -1,6 +1,6 @@
 #!/usr/bin/env node
-import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import { McpServer } from "@modelcontextprotocol/server";
+import { StdioServerTransport } from "@modelcontextprotocol/server/stdio";
 import { loadConfig } from "./config.js";
 import { registerTools, enableFrameworkToolBundle, frontLoadHiddenToolsForFrozenHost, shouldFrontLoadHiddenTools, } from "./register-tools.js";
 import { autoDiscoverConversations } from "./tools/conversation-tools.js";
@@ -11,6 +11,9 @@ import { CODESIFT_INSTRUCTIONS } from "./instructions.js";
 import { setupHooksForPlatform } from "./cli/setup.js";
 import { detectPlatform, detectPlatformFromClientInfo } from "./cli/platform.js";
 import { createRequire } from "node:module";
+import { resolve as pathResolve } from "node:path";
+import { statSync } from "node:fs";
+import { runWithRequestContext } from "./server-helpers/request-context.js";
 // Re-export for test compatibility
 export { buildResponseHint, resetSessionState } from "./server-helpers.js";
 export { resetSession } from "./storage/session-state.js";
@@ -85,28 +88,6 @@ export function createCodesiftServer() {
 const server = createCodesiftServer();
 /** Bind addresses considered loopback-safe for the local daemon. */
 const LOOPBACK_HOSTS = new Set(["127.0.0.1", "::1", "localhost"]);
-/** Read and JSON-parse a request body (POST). Resolves undefined on malformed input. */
-function readJsonBody(req) {
-    return new Promise((resolve) => {
-        let data = "";
-        req.on("data", (chunk) => {
-            data += chunk;
-        });
-        req.on("end", () => {
-            if (!data) {
-                resolve(undefined);
-                return;
-            }
-            try {
-                resolve(JSON.parse(data));
-            }
-            catch {
-                resolve(undefined);
-            }
-        });
-        req.on("error", () => resolve(undefined));
-    });
-}
 /**
  * Start the shared HTTP MCP daemon on loopback. Each MCP session gets its own
  * McpServer instance, but ALL sessions run in this one process and therefore
@@ -117,10 +98,42 @@ function readJsonBody(req) {
  * returned in `mcp-session-id`; subsequent requests carry that header. Binds
  * 127.0.0.1 only; optional bearer token gates MCP requests (Task 10 hardens).
  */
+/**
+ * Working directory declared in the connection URL: `/mcp?cwd=/abs/path`.
+ *
+ * Module scope now that serving is stateless: there is no session object to
+ * hang it on, and every request carries it independently.
+ *
+ * Validated rather than trusted: an absolute path to a real directory or
+ * nothing. Not a security boundary (the daemon is loopback-only and already
+ * serves every indexed repo to any local caller) but it keeps a typo from
+ * silently resolving every repo to garbage.
+ */
+function cwdFromUrl(rawUrl) {
+    const q = rawUrl.indexOf("?");
+    if (q < 0)
+        return undefined;
+    let value;
+    try {
+        value = new URLSearchParams(rawUrl.slice(q + 1)).get("cwd");
+    }
+    catch {
+        return undefined;
+    }
+    if (!value)
+        return undefined;
+    try {
+        const resolved = pathResolve(value);
+        return statSync(resolved).isDirectory() ? resolved : undefined;
+    }
+    catch {
+        return undefined;
+    }
+}
 export async function startHttpServer(opts = {}) {
     const http = await import("node:http");
-    const { randomUUID } = await import("node:crypto");
-    const { StreamableHTTPServerTransport } = await import("@modelcontextprotocol/sdk/server/streamableHttp.js");
+    const { createMcpHandler } = await import("@modelcontextprotocol/server");
+    const { toNodeHandler } = await import("@modelcontextprotocol/node");
     const host = opts.host ?? "127.0.0.1"; // loopback only — never expose to the network
     // Hard refuse a non-loopback bind: the daemon serves trusted local editor
     // windows only and has no network auth model beyond the optional token.
@@ -128,14 +141,35 @@ export async function startHttpServer(opts = {}) {
         throw new Error(`codesift HTTP daemon refuses non-loopback bind "${host}" — it is local-only by design.`);
     }
     const token = opts.token ?? process.env["CODESIFT_HTTP_TOKEN"];
-    const sessions = new Map();
+    /**
+     * Stateless serving (MCP 2026-07-28, and the default for `legacy` clients).
+     *
+     * The previous implementation kept an `Mcp-Session-Id` → session map, which
+     * made a daemon restart fatal to every connected client: each one held an id
+     * the new process had never issued, so its next call came back
+     * `no valid session` and stayed broken until someone reconnected it by hand.
+     * That happened on every `service install --force`, i.e. every upgrade, and
+     * it bit repeatedly while this was being built.
+     *
+     * With no protocol-level session there is nothing to invalidate. Verified
+     * against a 2025-era client — the era Claude Code 2.1.220 still negotiates:
+     * the server process was replaced mid-conversation and the same client kept
+     * calling tools without re-initializing.
+     *
+     * The other half is that any request may land on any instance, which is what
+     * makes more than one process — or a remote host — possible at all without a
+     * shared session store.
+     */
+    const handler = createMcpHandler(() => createCodesiftServer(), { legacy: "stateless" });
+    const nodeHandler = toNodeHandler(handler);
+    let inFlight = 0;
     const httpServer = http.createServer((req, res) => {
         void (async () => {
             try {
                 const url = req.url ?? "/";
                 if (url === "/health" || url.startsWith("/health?")) {
                     res.writeHead(200, { "content-type": "application/json" });
-                    res.end(JSON.stringify({ status: "ok", sessions: sessions.size, version: PKG_VERSION }));
+                    res.end(JSON.stringify({ status: "ok", sessions: inFlight, version: PKG_VERSION }));
                     return;
                 }
                 if (token) {
@@ -146,39 +180,20 @@ export async function startHttpServer(opts = {}) {
                         return;
                     }
                 }
-                const sessionId = req.headers["mcp-session-id"];
-                const body = req.method === "POST" ? await readJsonBody(req) : undefined;
-                const isInit = typeof body === "object" &&
-                    body !== null &&
-                    body.method === "initialize";
-                let session = sessionId ? sessions.get(sessionId) : undefined;
-                if (!session) {
-                    if (!isInit) {
-                        res.writeHead(400, { "content-type": "application/json" });
-                        res.end(JSON.stringify({
-                            jsonrpc: "2.0",
-                            error: { code: -32000, message: "Bad Request: no valid session (initialize first)" },
-                        }));
-                        return;
-                    }
-                    const mcp = createCodesiftServer();
-                    const transport = new StreamableHTTPServerTransport({
-                        sessionIdGenerator: () => randomUUID(),
-                        onsessioninitialized: (sid) => {
-                            sessions.set(sid, { transport, server: mcp });
-                        },
-                    });
-                    transport.onclose = () => {
-                        if (transport.sessionId)
-                            sessions.delete(transport.sessionId);
-                    };
-                    // Cast: the SDK declares Transport.onclose non-optional but
-                    // StreamableHTTPServerTransport types it optional — incompatible only
-                    // under exactOptionalPropertyTypes, harmless at runtime.
-                    await mcp.connect(transport);
-                    session = { transport, server: mcp };
+                // The caller's directory, pinned per request. Statelessness makes this
+                // the natural carrier: there is no session to have learned it once.
+                const cwd = cwdFromUrl(url);
+                inFlight++;
+                try {
+                    await (cwd
+                        // Cast: Node types `method`/`url` as optional, the handler wants
+                        // them required. Both are always present on a served request.
+                        ? runWithRequestContext({ cwd }, () => nodeHandler(req, res))
+                        : nodeHandler(req, res));
+                }
+                finally {
+                    inFlight--;
                 }
-                await session.transport.handleRequest(req, res, body);
             }
             catch (err) {
                 if (!res.headersSent) {
@@ -197,13 +212,13 @@ export async function startHttpServer(opts = {}) {
     return {
         port,
         url: `http://${host}:${port}/mcp`,
-        sessionCount: () => sessions.size,
-        close: () => new Promise((resolve) => {
-            for (const s of sessions.values())
-                void s.transport.close();
-            sessions.clear();
-            httpServer.close(() => resolve());
-        }),
+        // No sessions to count any more; report work in flight so /health still
+        // says something true about load.
+        sessionCount: () => inFlight,
+        close: async () => {
+            await handler.close();
+            await new Promise((resolve) => httpServer.close(() => resolve()));
+        },
     };
 }
 /**

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package/dist/storage/embedding-store.d.ts

@@ -9,16 +9,14 @@ export declare function getEmbeddingPath(indexPath: string): string;
  * {hash}.index.json → {hash}.embeddings.meta.json
  */
 export declare function getEmbeddingMetaPath(indexPath: string): string;
-/**
- * Load all embeddings from an ndjson file.
- * Returns a Map of symbolId → Float32Array vector.
- */
+/** Content hashes that came with the vectors at `embeddingPath`, if any. */
+export declare function contentHashesForPath(embeddingPath: string): Map<string, number>;
 export declare function loadEmbeddings(embeddingPath: string, maxBytes?: number): Promise<Map<string, Float32Array>>;
 /**
  * Save all embeddings to an ndjson file using streaming writes.
  * Avoids building a single huge string (30K+ symbols × 1536 floats = >300MB).
  */
-export declare function saveEmbeddings(embeddingPath: string, embeddings: Map<string, Float32Array>): Promise<void>;
+export declare function saveEmbeddings(embeddingPath: string, embeddings: Map<string, Float32Array>, hashes?: ReadonlyMap<string, number>): Promise<void>;
 /**
  * Save embedding metadata atomically.
  */
@@ -28,6 +26,17 @@ export declare function saveEmbeddingMeta(metaPath: string, meta: EmbeddingMeta)
  * Returns null if not found or invalid.
  */
 export declare function loadEmbeddingMeta(metaPath: string): Promise<EmbeddingMeta | null>;
+/**
+ * Seed the in-process hash map for `cacheKey` from what was persisted.
+ *
+ * This map used to start empty on every process, so `hashes.get(id)` was always
+ * undefined, every symbol compared as changed, and the entire corpus was
+ * re-embedded on each MCP server start — 4.18M symbols across 1,587 repos, and
+ * servers restart once per session.
+ */
+export declare function primeContentHashes(cacheKey: string, hashes: ReadonlyMap<string, number>): void;
+/** Hashes currently known for `cacheKey`, for persisting beside the vectors. */
+export declare function contentHashesFor(cacheKey: string): ReadonlyMap<string, number>;
 /**
  * Batch-embed symbols using the given provider, appending to existing embeddings.
  * Skips symbols whose ID exists AND content hash hasn't changed.

package/dist/storage/embedding-store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"embedding-store.d.ts","sourceRoot":"","sources":["../../src/storage/embedding-store.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAGjD;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAE1D;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAE9D;AAOD;;;GAGG;AACH,wBAAsB,cAAc,CAClC,aAAa,EAAE,MAAM,EACrB,QAAQ,GAAE,MAAiC,GAC1C,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,CA0FpC;AAED;;;GAGG;AACH,wBAAsB,cAAc,CAClC,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,GACpC,OAAO,CAAC,IAAI,CAAC,CAmCf;AAED;;GAEG;AACH,wBAAsB,iBAAiB,CACrC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,aAAa,GAClB,OAAO,CAAC,IAAI,CAAC,CAGf;AAED;;;GAGG;AACH,wBAAsB,iBAAiB,CACrC,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,aAAa,GAAG,IAAI,CAAC,CAgB/B;AAeD;;;;;;;;;;;GAWG;AACH,wBAAsB,UAAU,CAC9B,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,EAChC,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,EACnC,OAAO,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,EACjD,SAAS,EAAE,MAAM,EACjB,QAAQ,CAAC,EAAE,MAAM,GAChB,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,CA2CpC"}
+{"version":3,"file":"embedding-store.d.ts","sourceRoot":"","sources":["../../src/storage/embedding-store.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAGjD;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAE1D;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAE9D;AAkCD,4EAA4E;AAC5E,wBAAgB,oBAAoB,CAAC,aAAa,EAAE,MAAM,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAE/E;AAED,wBAAsB,cAAc,CAClC,aAAa,EAAE,MAAM,EACrB,QAAQ,GAAE,MAAiC,GAC1C,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,CAgGpC;AAED;;;GAGG;AACH,wBAAsB,cAAc,CAClC,aAAa,EAAE,MAAM,EACrB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,EACrC,MAAM,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,GACnC,OAAO,CAAC,IAAI,CAAC,CAsCf;AAED;;GAEG;AACH,wBAAsB,iBAAiB,CACrC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,aAAa,GAClB,OAAO,CAAC,IAAI,CAAC,CAGf;AAED;;;GAGG;AACH,wBAAsB,iBAAiB,CACrC,QAAQ,EAAE,MAAM,GACf,OAAO,CAAC,aAAa,GAAG,IAAI,CAAC,CAgB/B;AAeD;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAK9F;AAED,gFAAgF;AAChF,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,GAAG,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,CAE9E;AAED;;;;;;;;;;;GAWG;AACH,wBAAsB,UAAU,CAC9B,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,EAChC,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,EACnC,OAAO,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,EACjD,SAAS,EAAE,MAAM,EACjB,QAAQ,CAAC,EAAE,MAAM,GAChB,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,CA2CpC"}

package/dist/storage/embedding-store.js

@@ -18,8 +18,22 @@ export function getEmbeddingMetaPath(indexPath) {
  * Load all embeddings from an ndjson file.
  * Returns a Map of symbolId → Float32Array vector.
  */
+/**
+ * Content hashes read alongside the vectors on the last load of a given path.
+ *
+ * Keyed by path rather than repo name because that is what the loader knows.
+ * Populated as a side effect of `loadEmbeddings` — the data is already on the
+ * line, so collecting it costs nothing extra.
+ */
+const loadedContentHashes = new Map();
+/** Content hashes that came with the vectors at `embeddingPath`, if any. */
+export function contentHashesForPath(embeddingPath) {
+    return loadedContentHashes.get(embeddingPath) ?? new Map();
+}
 export async function loadEmbeddings(embeddingPath, maxBytes = Number.POSITIVE_INFINITY) {
     const embeddings = new Map();
+    const hashes = new Map();
+    loadedContentHashes.set(embeddingPath, hashes);
     // Stream line-by-line rather than readFile-ing the whole file into one string:
     // embedding files are GB-scale (e.g. 4.5GB), so a single slurp spikes the heap
     // by the full file size at load. readline keeps peak memory to one line plus
@@ -86,12 +100,17 @@ export async function loadEmbeddings(embeddingPath, maxBytes = Number.POSITIVE_I
                     if (residentBytes > maxBytes) {
                         overBudget = true;
                         embeddings.clear();
+                        // Hashes describe vectors we are dropping; keeping them would let
+                        // batchEmbed believe those symbols are still covered.
+                        hashes.clear();
                         rl.close();
                         stream.destroy();
                         resolve();
                         return;
                     }
                     embeddings.set(entry.id, vec);
+                    if (typeof entry.h === "number")
+                        hashes.set(entry.id, entry.h);
                 }
             }
             catch {
@@ -110,7 +129,7 @@ export async function loadEmbeddings(embeddingPath, maxBytes = Number.POSITIVE_I
  * Save all embeddings to an ndjson file using streaming writes.
  * Avoids building a single huge string (30K+ symbols × 1536 floats = >300MB).
  */
-export async function saveEmbeddings(embeddingPath, embeddings) {
+export async function saveEmbeddings(embeddingPath, embeddings, hashes) {
     // Sweep orphans from earlier runs that were killed mid-write. These files are
     // never overwritten (the name carries a timestamp), so without this they
     // accumulate indefinitely — see cleanupOrphanTempFiles.
@@ -125,7 +144,8 @@ export async function saveEmbeddings(embeddingPath, embeddings) {
         for (const [id, vec] of embeddings) {
             if (streamError)
                 throw streamError;
-            const line = JSON.stringify({ id, vec: Array.from(vec) }) + "\n";
+            const h = hashes?.get(id);
+            const line = JSON.stringify(h === undefined ? { id, vec: Array.from(vec) } : { id, vec: Array.from(vec), h }) + "\n";
             const canContinue = stream.write(line);
             if (!canContinue) {
                 await new Promise((resolve) => stream.once("drain", resolve));
@@ -187,6 +207,27 @@ function contentHash(text) {
 }
 /** Track content hashes so we re-embed when symbol content changes. */
 const embeddingContentHashes = new Map();
+/**
+ * Seed the in-process hash map for `cacheKey` from what was persisted.
+ *
+ * This map used to start empty on every process, so `hashes.get(id)` was always
+ * undefined, every symbol compared as changed, and the entire corpus was
+ * re-embedded on each MCP server start — 4.18M symbols across 1,587 repos, and
+ * servers restart once per session.
+ */
+export function primeContentHashes(cacheKey, hashes) {
+    if (hashes.size === 0)
+        return;
+    const target = embeddingContentHashes.get(cacheKey) ?? new Map();
+    for (const [id, h] of hashes)
+        if (!target.has(id))
+            target.set(id, h);
+    embeddingContentHashes.set(cacheKey, target);
+}
+/** Hashes currently known for `cacheKey`, for persisting beside the vectors. */
+export function contentHashesFor(cacheKey) {
+    return embeddingContentHashes.get(cacheKey) ?? new Map();
+}
 /**
  * Batch-embed symbols using the given provider, appending to existing embeddings.
  * Skips symbols whose ID exists AND content hash hasn't changed.

package/dist/storage/embedding-store.js.map

@@ -1 +1 @@
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package/dist/tools/index-tools/folder-indexer.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"folder-indexer.d.ts","sourceRoot":"","sources":["../../../src/tools/index-tools/folder-indexer.ts"],"names":[],"mappings":"AAwBA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAEpD,YAAY,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAuDpD;;;;;;GAMG;AACH,wBAAsB,sBAAsB,IAAI,OAAO,CAAC,IAAI,CAAC,CAI5D;AAWD,6CAA6C;AAC7C,wBAAgB,oCAAoC,IAAI,IAAI,CAE3D;AAED,wBAAsB,WAAW,CAC/B,UAAU,EAAE,MAAM,EAClB,OAAO,CAAC,EAAE;IACR,WAAW,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAClC,aAAa,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IACrC,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B;;;;OAIG;IACH,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B;;;OAGG;IACH,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;CAC7B,GACA,OAAO,CAAC,iBAAiB,CAAC,CAkZ5B"}

package/dist/tools/index-tools/folder-indexer.js

@@ -16,7 +16,24 @@ import { drainLegacyHashQueue, loadIndexSnapshot, saveIndexSnapshot, sha1OfFile
 import { setupWatcher } from "./watcher.js";
 import { validateAndMergeFolderWalk } from "./folder-merge.js";
 const INDEX_FOLDER_REDUNDANT_WINDOW_MS = 60_000;
-const DEFAULT_MAX_FILES = 50_000;
+/**
+ * Backstop against a pathological walk — NOT a budget, and not a number any
+ * real repository should approach.
+ *
+ * It was 50,000 with no stated rationale, and two repos sat exactly on it:
+ * tgm-mobi and Mobi3, both ~89% Composer `vendor/`. Dependency code was
+ * consuming the cap and pushing first-party source OUT of the index, so those
+ * repos were silently incomplete rather than merely slow. With `vendor/`
+ * excluded the largest genuine repo here is tgm-survey-platform at 14,439
+ * files, so 200,000 puts the ceiling an order of magnitude above anything real
+ * while still stopping a runaway walk.
+ *
+ * It stays finite because the index is ONE JSON blob per repo and the write
+ * path re-serialises all of it: tgm-survey-platform's 14k files already cost
+ * 269 MB and ~1.8s per parse. An unbounded cap would trade silent truncation
+ * for an index too expensive to write, which is not a better failure.
+ */
+const DEFAULT_MAX_FILES = 200_000;
 /**
  * In-flight background embedding runs, keyed by repo.
  *
@@ -134,6 +151,9 @@ export async function indexFolder(folderPath, options) {
     });
     const hitFileLimit = files.length >= maxFiles;
     if (hitFileLimit) {
+        // stderr only is how this stayed invisible: the caller got an ordinary
+        // success result and no way to know the index was partial. It is reported
+        // on the result too now — see `file_limit_hit`.
         console.error(`[codesift] index_folder: ${rootPath} hit max_files=${maxFiles}; ` +
             `partial index. Pass include_paths to scope the walk or raise max_files.`);
     }
@@ -445,6 +465,14 @@ export async function indexFolder(folderPath, options) {
         file_count: mergedEntries.length,
         symbol_count: mergedSymbols.length,
         duration_ms: Date.now() - startTime,
+        ...(hitFileLimit
+            ? {
+                file_limit_hit: true,
+                hint: `Walk stopped at max_files=${maxFiles}, so this index covers only part of the repo. `
+                    + "Check for a large vendored or generated tree, add it to .codesiftignore, "
+                    + "or raise the cap with CODESIFT_MAX_FILES.",
+            }
+            : {}),
     };
 }
 //# sourceMappingURL=folder-indexer.js.map

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package/dist/tools/index-tools/folder-merge.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"folder-merge.d.ts","sourceRoot":"","sources":["../../../src/tools/index-tools/folder-merge.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AACvE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,gCAAgC,CAAC;AACvE,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAEpD,MAAM,WAAW,kBAAkB;IACjC,QAAQ,EAAE,SAAS,GAAG,IAAI,CAAC;IAC3B,WAAW,EAAE,SAAS,EAAE,CAAC;IACzB,OAAO,EAAE,UAAU,EAAE,CAAC;IACtB,gBAAgB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACzC,WAAW,EAAE,gBAAgB,GAAG,IAAI,CAAC;IACrC,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,OAAO,CAAC;IACtB,YAAY,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;CACpC;AAED,MAAM,WAAW,iBAAiB;IAChC,aAAa,EAAE,UAAU,EAAE,CAAC;IAC5B,aAAa,EAAE,SAAS,EAAE,CAAC;IAC3B,mBAAmB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC7C;AAED,wBAAsB,0BAA0B,CAC9C,OAAO,EAAE,kBAAkB,GAC1B,OAAO,CAAC,iBAAiB,GAAG,iBAAiB,CAAC,CAgOhD"}
+{"version":3,"file":"folder-merge.d.ts","sourceRoot":"","sources":["../../../src/tools/index-tools/folder-merge.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AACvE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,gCAAgC,CAAC;AACvE,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAEpD,MAAM,WAAW,kBAAkB;IACjC,QAAQ,EAAE,SAAS,GAAG,IAAI,CAAC;IAC3B,WAAW,EAAE,SAAS,EAAE,CAAC;IACzB,OAAO,EAAE,UAAU,EAAE,CAAC;IACtB,gBAAgB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACzC,WAAW,EAAE,gBAAgB,GAAG,IAAI,CAAC;IACrC,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,OAAO,CAAC;IACtB,YAAY,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;CACpC;AAED,MAAM,WAAW,iBAAiB;IAChC,aAAa,EAAE,UAAU,EAAE,CAAC;IAC5B,aAAa,EAAE,SAAS,EAAE,CAAC;IAC3B,mBAAmB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC7C;AA8BD,wBAAsB,0BAA0B,CAC9C,OAAO,EAAE,kBAAkB,GAC1B,OAAO,CAAC,iBAAiB,GAAG,iBAAiB,CAAC,CAmPhD"}

package/dist/tools/index-tools/folder-merge.js

@@ -1,6 +1,34 @@
 import { stat } from "node:fs/promises";
 import { join } from "node:path";
 import { isExistingIndexStale } from "./snapshots.js";
+import { IGNORE_DIRS } from "../../utils/walk.js";
+/**
+ * Fraction of an existing index's paths that today's walk would refuse to visit.
+ *
+ * The sanity guard exists to catch a TRUNCATED walk — a WASM crash or FS error
+ * that silently returns a slice of the repo. A file the walker now deliberately
+ * skips is not evidence of that, but it looks identical by file count, and the
+ * on-disk auto-heal cannot tell them apart either: an excluded file is still on
+ * disk, so sampling finds it present and the guard rejects.
+ *
+ * That is not hypothetical. Adding `vendor/` to the ignore set drops
+ * `tgm-collect` from 11,622 files to 1,557 (87% of its index was Composer
+ * dependencies) — a legitimate, desired shrink that the guard would reject
+ * forever, so the fix could never actually take effect on the repos that needed
+ * it most.
+ */
+function countExistingNowExcluded(existing) {
+    let excluded = 0;
+    for (const fe of existing.files) {
+        const segments = fe.path.split("/");
+        // Directory segments only — the filename is not a directory, and a dotfile
+        // at the leaf (.eslintrc.js) is indexed while a dot-DIRECTORY is not.
+        segments.pop();
+        if (segments.some((s) => IGNORE_DIRS.has(s) || s.startsWith(".")))
+            excluded++;
+    }
+    return excluded;
+}
 export async function validateAndMergeFolderWalk(context) {
     const { existing, fileEntries, symbols, newSnapshotFiles, oldSnapshot, rootPath, repoName, startTime, maxFiles, hitFileLimit, includePaths: scopePaths, } = context;
     const STALE_SAMPLE_LIMIT = 256;
@@ -118,7 +146,25 @@ export async function validateAndMergeFolderWalk(context) {
         // truncated and gets rejected forever. Disambiguate by sampling the old
         // index's paths: if most of them no longer exist on disk, the old index
         // is stale dead weight — accept the new result instead of keeping it.
-        if (await isExistingIndexStale(existing, rootPath)) {
+        const excludedCount = existing.files.length === 0 ? 0 : countExistingNowExcluded(existing);
+        const excludedFraction = existing.files.length === 0 ? 0 : excludedCount / existing.files.length;
+        // What the walk SHOULD still find once the excluded tree is discounted.
+        // Re-arming the same 50% drop test against this number is what keeps the
+        // exclusion bypass from swallowing a genuine truncation: the excluded
+        // fraction describes the OLD index's composition and says nothing about
+        // whether the NEW walk succeeded. Without it, a vendor-heavy repo whose
+        // walk aborted early — 800 files where ~5,000 were expected — would sail
+        // through, because 87% of the old index is still "explained".
+        const expectedRemaining = existing.files.length - excludedCount;
+        const walkPlausible = fileEntries.length >= expectedRemaining * DROP_THRESHOLD;
+        if (excludedFraction >= STALE_MISSING_FRACTION && walkPlausible) {
+            // The shrink is explained by the walker's own rules, not by a failure.
+            console.error(`[codesift] Sanity check auto-heal for ${repoName}: ` +
+                `${Math.round(excludedFraction * 100)}% of the old index sits under directories ` +
+                `the walker now excludes (e.g. vendor/, node_modules/). Accepting new index ` +
+                `(${fileEntries.length} files vs ${existing.file_count}, ~${expectedRemaining} expected).`);
+        }
+        else if (await isExistingIndexStale(existing, rootPath)) {
             console.error(`[codesift] Sanity check auto-heal for ${repoName}: old index has ` +
                 `${existing.file_count} files but most sampled paths no longer exist ` +
                 `on disk. Accepting new index (${fileEntries.length} files).`);