codesift-mcp 0.1.0

package/dist/tools/index-tools.js

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+import { readdir, readFile, stat, unlink, rm, mkdir as mkdirAsync } from "node:fs/promises";
+import { join, relative, extname, resolve, basename } from "node:path";
+import { execFileSync } from "node:child_process";
+import { parseFile } from "../parser/parser-manager.js";
+import { extractSymbols, extractMarkdownSymbols, extractPrismaSymbols } from "../parser/symbol-extractor.js";
+import { getLanguageForExtension } from "../parser/parser-manager.js";
+import { saveIndex, loadIndex, getIndexPath, saveIncremental } from "../storage/index-store.js";
+import { registerRepo, listRepos as listRegistryRepos, getRepo, removeRepo, getRepoName } from "../storage/registry.js";
+import { startWatcher, stopWatcher } from "../storage/watcher.js";
+import { buildBM25Index } from "../search/bm25.js";
+import { buildSymbolText, createEmbeddingProvider } from "../search/semantic.js";
+import { loadEmbeddings, saveEmbeddings, saveEmbeddingMeta, getEmbeddingPath, getEmbeddingMetaPath, batchEmbed } from "../storage/embedding-store.js";
+import { saveChunks, saveChunkEmbeddings, loadChunkEmbeddings, getChunkPath, getChunkEmbeddingPath } from "../storage/chunk-store.js";
+import { chunkFile } from "../search/chunker.js";
+import { loadConfig } from "../config.js";
+import { validateGitUrl, validateGitRef } from "../utils/git-validation.js";
+// Ignore patterns for directory walking (same as watcher)
+const IGNORE_DIRS = new Set([
+    "node_modules", ".git", "dist", "build", "coverage",
+    ".codesift", ".next", "__pycache__", ".pytest_cache",
+    ".venv", "venv", ".tox", ".mypy_cache", ".turbo",
+    "generated", "audit-results", ".backup", "jscpd-report",
+]);
+const MAX_FILE_SIZE = 1_000_000; // 1MB — skip giant files
+const PARSE_CONCURRENCY = 8;
+// Active watchers and in-memory indexes keyed by repo name
+const activeWatchers = new Map();
+const bm25Indexes = new Map();
+const embeddingCaches = new Map();
+/**
+ * Walk a directory tree, collecting files that can be parsed.
+ * Respects .gitignore patterns and skips known non-source directories.
+ */
+async function walkDirectory(rootPath, includePaths) {
+    const files = [];
+    async function walk(dirPath) {
+        let entries;
+        try {
+            entries = await readdir(dirPath, { withFileTypes: true });
+        }
+        catch {
+            return; // permission denied, etc.
+        }
+        for (const entry of entries) {
+            const fullPath = join(dirPath, entry.name);
+            if (entry.isDirectory()) {
+                if (IGNORE_DIRS.has(entry.name) || entry.name.startsWith(".")) {
+                    continue;
+                }
+                await walk(fullPath);
+            }
+            else if (entry.isFile()) {
+                const ext = extname(entry.name);
+                const language = getLanguageForExtension(ext);
+                if (!language)
+                    continue;
+                // Filter by include paths if specified
+                if (includePaths && includePaths.length > 0) {
+                    const relPath = relative(rootPath, fullPath);
+                    const matches = includePaths.some((p) => relPath.startsWith(p));
+                    if (!matches)
+                        continue;
+                }
+                // Skip files that are too large
+                try {
+                    const fileStat = await stat(fullPath);
+                    if (fileStat.size > MAX_FILE_SIZE)
+                        continue;
+                }
+                catch {
+                    continue;
+                }
+                files.push(fullPath);
+            }
+        }
+    }
+    await walk(rootPath);
+    return files;
+}
+/**
+ * Parse files in parallel batches.
+ */
+async function parseFiles(files, repoRoot, repoName) {
+    const allSymbols = [];
+    const fileEntries = [];
+    // Process in batches for controlled concurrency
+    for (let i = 0; i < files.length; i += PARSE_CONCURRENCY) {
+        const batch = files.slice(i, i + PARSE_CONCURRENCY);
+        const results = await Promise.all(batch.map(async (filePath) => {
+            try {
+                const source = await readFile(filePath, "utf-8");
+                const relPath = relative(repoRoot, filePath);
+                const ext = extname(filePath);
+                const language = getLanguageForExtension(ext) ?? "unknown";
+                let symbols;
+                // Markdown and Prisma use custom parsers (no tree-sitter grammar)
+                if (language === "markdown") {
+                    symbols = extractMarkdownSymbols(source, relPath, repoName);
+                }
+                else if (language === "prisma") {
+                    symbols = extractPrismaSymbols(source, relPath, repoName);
+                }
+                else {
+                    const tree = await parseFile(filePath, source);
+                    if (!tree)
+                        return null;
+                    symbols = extractSymbols(tree, relPath, source, repoName, language);
+                }
+                const entry = {
+                    path: relPath,
+                    language,
+                    symbol_count: symbols.length,
+                    last_modified: Date.now(),
+                };
+                return { symbols, entry };
+            }
+            catch {
+                return null;
+            }
+        }));
+        for (const result of results) {
+            if (result) {
+                allSymbols.push(...result.symbols);
+                fileEntries.push(result.entry);
+            }
+        }
+    }
+    return { symbols: allSymbols, fileEntries };
+}
+export async function indexFolder(folderPath, options) {
+    const config = loadConfig();
+    const startTime = Date.now();
+    const rootPath = resolve(folderPath);
+    const repoName = getRepoName(rootPath);
+    const indexPath = getIndexPath(config.dataDir, rootPath);
+    // Check for incremental update
+    if (options?.incremental) {
+        const existing = await loadIndex(indexPath);
+        if (existing) {
+            // For now, incremental just returns existing stats.
+            // Full incremental support comes via file watcher.
+            return {
+                repo: repoName,
+                root: rootPath,
+                file_count: existing.file_count,
+                symbol_count: existing.symbol_count,
+                duration_ms: Date.now() - startTime,
+            };
+        }
+    }
+    // Walk directory and collect parseable files
+    const files = await walkDirectory(rootPath, options?.include_paths);
+    // Parse all files and extract symbols
+    const { symbols, fileEntries } = await parseFiles(files, rootPath, repoName);
+    // Build and cache BM25 index
+    const bm25 = buildBM25Index(symbols);
+    bm25Indexes.set(repoName, bm25);
+    // Build code index
+    const codeIndex = {
+        repo: repoName,
+        root: rootPath,
+        symbols,
+        files: fileEntries,
+        created_at: Date.now(),
+        updated_at: Date.now(),
+        symbol_count: symbols.length,
+        file_count: fileEntries.length,
+    };
+    // Save index to disk
+    await saveIndex(indexPath, codeIndex);
+    // Embed symbols if an embedding provider is configured (non-fatal if it fails)
+    if (config.embeddingProvider) {
+        const embeddingPath = getEmbeddingPath(indexPath);
+        const metaPath = getEmbeddingMetaPath(indexPath);
+        try {
+            const provider = createEmbeddingProvider(config.embeddingProvider, config);
+            const symbolTexts = new Map(symbols.map((s) => [s.id, buildSymbolText(s)]));
+            const existing = await loadEmbeddings(embeddingPath);
+            const embeddings = await batchEmbed(symbolTexts, existing, provider.embed.bind(provider), config.embeddingBatchSize);
+            await saveEmbeddings(embeddingPath, embeddings);
+            await saveEmbeddingMeta(metaPath, {
+                model: provider.model,
+                provider: config.embeddingProvider,
+                dimensions: provider.dimensions,
+                symbol_count: embeddings.size,
+                updated_at: Date.now(),
+            });
+            embeddingCaches.set(repoName, embeddings);
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            console.error(`[codesift] Embedding failed for ${repoName}: ${message}`);
+            // Non-fatal — BM25 search still works
+        }
+    }
+    // Embed file chunks if an embedding provider is configured (non-fatal if it fails)
+    if (config.embeddingProvider) {
+        const chunkPath = getChunkPath(indexPath);
+        const chunkEmbeddingPath = getChunkEmbeddingPath(indexPath);
+        try {
+            const provider = createEmbeddingProvider(config.embeddingProvider, config);
+            // Build chunks for all indexed files
+            const allChunks = [];
+            for (const entry of fileEntries) {
+                const fullPath = join(rootPath, entry.path);
+                try {
+                    const content = await readFile(fullPath, "utf-8");
+                    const fileChunks = chunkFile(entry.path, content, repoName);
+                    allChunks.push(...fileChunks);
+                }
+                catch {
+                    // Skip unreadable files
+                }
+            }
+            if (allChunks.length > 0) {
+                // Load existing chunk embeddings to avoid re-embedding unchanged chunks
+                const existingChunkEmbeddings = await loadChunkEmbeddings(chunkEmbeddingPath) ?? new Map();
+                const chunkTexts = new Map(allChunks.map((c) => [c.id, c.text]));
+                const chunkEmbeddings = await batchEmbed(chunkTexts, existingChunkEmbeddings, provider.embed.bind(provider), 96);
+                await saveChunks(chunkPath, allChunks);
+                await saveChunkEmbeddings(chunkEmbeddingPath, chunkEmbeddings);
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            console.error(`[codesift] Chunk embedding failed for ${repoName}: ${message}`);
+            // Non-fatal — symbol-level and BM25 search still work
+        }
+    }
+    // Register in the global registry
+    const meta = {
+        name: repoName,
+        root: rootPath,
+        index_path: indexPath,
+        symbol_count: symbols.length,
+        file_count: fileEntries.length,
+        updated_at: Date.now(),
+    };
+    await registerRepo(config.registryPath, meta);
+    // Start file watcher for incremental updates (unless disabled)
+    const shouldWatch = options?.watch !== false;
+    if (shouldWatch) {
+        const existingWatcher = activeWatchers.get(repoName);
+        if (existingWatcher) {
+            await stopWatcher(existingWatcher);
+        }
+        const watcher = startWatcher(rootPath, (changedFile) => {
+            handleFileChange(rootPath, repoName, indexPath, changedFile).catch((err) => {
+                const message = err instanceof Error ? err.message : String(err);
+                console.error(`[codesift] Watcher error for ${changedFile}: ${message}`);
+            });
+        });
+        activeWatchers.set(repoName, watcher);
+    }
+    return {
+        repo: repoName,
+        root: rootPath,
+        file_count: fileEntries.length,
+        symbol_count: symbols.length,
+        duration_ms: Date.now() - startTime,
+    };
+}
+/**
+ * Clone a remote git repository and index it.
+ * Clones into ~/.codesift/repos/{name}. If already cloned, pulls latest.
+ */
+export async function indexRepo(url, options) {
+    validateGitUrl(url);
+    if (options?.branch) {
+        validateGitRef(options.branch);
+    }
+    const config = loadConfig();
+    const reposDir = join(config.dataDir, "repos");
+    // Ensure repos directory exists (R-2: git clone requires parent to exist)
+    await mkdirAsync(reposDir, { recursive: true });
+    // Derive repo name from URL: "https://github.com/user/repo.git" → "repo"
+    const urlBasename = basename(url).replace(/\.git$/, "");
+    const cloneTarget = join(reposDir, urlBasename);
+    // Check if already cloned — pull instead of clone
+    let needsClone = true;
+    try {
+        const s = await stat(join(cloneTarget, ".git"));
+        if (s.isDirectory()) {
+            needsClone = false;
+        }
+    }
+    catch {
+        // Directory doesn't exist — will clone
+    }
+    // R-1: Use execFileSync (array form) to prevent shell injection.
+    // execSync with string interpolation allows $(cmd) expansion in URLs.
+    if (needsClone) {
+        const args = ["clone", "--depth", "1"];
+        if (options?.branch)
+            args.push("--branch", options.branch);
+        args.push("--", url, cloneTarget);
+        execFileSync("git", args, { stdio: "pipe", timeout: 120_000 });
+    }
+    else {
+        // Pull latest changes
+        try {
+            if (options?.branch) {
+                execFileSync("git", ["-C", cloneTarget, "checkout", options.branch], {
+                    stdio: "pipe",
+                    timeout: 30_000,
+                });
+            }
+            execFileSync("git", ["-C", cloneTarget, "pull", "--ff-only"], {
+                stdio: "pipe",
+                timeout: 60_000,
+            });
+        }
+        catch {
+            // Pull may fail if detached HEAD — force fresh clone
+            await rm(cloneTarget, { recursive: true, force: true });
+            const args = ["clone", "--depth", "1"];
+            if (options?.branch)
+                args.push("--branch", options.branch);
+            args.push("--", url, cloneTarget);
+            execFileSync("git", args, { stdio: "pipe", timeout: 120_000 });
+        }
+    }
+    // Index the cloned repo (no watcher for remote repos)
+    return indexFolder(cloneTarget, {
+        include_paths: options?.include_paths,
+        watch: false,
+    });
+}
+/**
+ * Handle a file change event from the watcher.
+ * Re-parses the changed file and updates the index incrementally.
+ */
+async function handleFileChange(repoRoot, repoName, indexPath, relativeFile) {
+    const fullPath = join(repoRoot, relativeFile);
+    try {
+        const source = await readFile(fullPath, "utf-8");
+        const ext = extname(relativeFile);
+        const language = getLanguageForExtension(ext) ?? "unknown";
+        let symbols;
+        // Markdown and Prisma use custom parsers (no tree-sitter grammar)
+        if (language === "markdown") {
+            symbols = extractMarkdownSymbols(source, relativeFile, repoName);
+        }
+        else if (language === "prisma") {
+            symbols = extractPrismaSymbols(source, relativeFile, repoName);
+        }
+        else {
+            const tree = await parseFile(fullPath, source);
+            if (!tree)
+                return;
+            symbols = extractSymbols(tree, relativeFile, source, repoName, language);
+        }
+        const fileEntry = {
+            path: relativeFile,
+            language,
+            symbol_count: symbols.length,
+            last_modified: Date.now(),
+        };
+        await saveIncremental(indexPath, relativeFile, symbols, fileEntry);
+        // Rebuild in-memory BM25 index
+        const index = await loadIndex(indexPath);
+        if (index) {
+            bm25Indexes.set(repoName, buildBM25Index(index.symbols));
+        }
+    }
+    catch {
+        // File may have been deleted between event and read — ignore
+    }
+}
+export async function listAllRepos() {
+    const config = loadConfig();
+    return listRegistryRepos(config.registryPath);
+}
+export async function invalidateCache(repoName) {
+    const config = loadConfig();
+    const meta = await getRepo(config.registryPath, repoName);
+    if (!meta)
+        return false;
+    // Stop watcher
+    const watcher = activeWatchers.get(repoName);
+    if (watcher) {
+        await stopWatcher(watcher);
+        activeWatchers.delete(repoName);
+    }
+    // Remove in-memory caches
+    bm25Indexes.delete(repoName);
+    embeddingCaches.delete(repoName);
+    // Delete index file + embedding files + chunk files
+    const embeddingPath = getEmbeddingPath(meta.index_path);
+    const embeddingMetaPath = getEmbeddingMetaPath(meta.index_path);
+    const chunkPath = getChunkPath(meta.index_path);
+    const chunkEmbeddingPath = getChunkEmbeddingPath(meta.index_path);
+    for (const fp of [meta.index_path, embeddingPath, embeddingMetaPath, chunkPath, chunkEmbeddingPath]) {
+        try {
+            await unlink(fp);
+        }
+        catch { /* File may not exist */ }
+    }
+    // Remove from registry
+    await removeRepo(config.registryPath, repoName);
+    return true;
+}
+/**
+ * Get the in-memory BM25 index for a repo.
+ * Loads from disk if not cached.
+ */
+export async function getBM25Index(repoName) {
+    const cached = bm25Indexes.get(repoName);
+    if (cached)
+        return cached;
+    const config = loadConfig();
+    const meta = await getRepo(config.registryPath, repoName);
+    if (!meta)
+        return null;
+    const index = await loadIndex(meta.index_path);
+    if (!index)
+        return null;
+    const bm25 = buildBM25Index(index.symbols);
+    bm25Indexes.set(repoName, bm25);
+    return bm25;
+}
+/**
+ * Get the code index for a repo from disk.
+ */
+export async function getCodeIndex(repoName) {
+    const config = loadConfig();
+    const meta = await getRepo(config.registryPath, repoName);
+    if (!meta)
+        return null;
+    return loadIndex(meta.index_path);
+}
+/**
+ * Get the in-memory embedding cache for a repo.
+ * Loads from disk if not cached. Returns null if no embeddings file exists.
+ */
+export async function getEmbeddingCache(repoName) {
+    const cached = embeddingCaches.get(repoName);
+    if (cached)
+        return cached;
+    const config = loadConfig();
+    const meta = await getRepo(config.registryPath, repoName);
+    if (!meta)
+        return null;
+    const embeddingPath = getEmbeddingPath(meta.index_path);
+    const embeddings = await loadEmbeddings(embeddingPath);
+    if (embeddings.size === 0)
+        return null;
+    embeddingCaches.set(repoName, embeddings);
+    return embeddings;
+}
+//# sourceMappingURL=index-tools.js.map

package/dist/tools/index-tools.js.map

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package/dist/tools/outline-tools.d.ts

@@ -0,0 +1,59 @@
+import type { SymbolKind } from "../types.js";
+export interface FileTreeNode {
+    name: string;
+    path: string;
+    type: "dir" | "file";
+    symbol_count?: number;
+    children?: FileTreeNode[];
+}
+export interface FileTreeOptions {
+    path_prefix?: string | undefined;
+    name_pattern?: string | undefined;
+    depth?: number | undefined;
+    compact?: boolean | undefined;
+    min_symbols?: number | undefined;
+}
+export interface CompactFileEntry {
+    path: string;
+    symbols: number;
+}
+export interface FileOutlineEntry {
+    id: string;
+    name: string;
+    kind: SymbolKind;
+    signature?: string;
+    start_line: number;
+    end_line: number;
+    parent?: string;
+}
+export interface DirectoryOutline {
+    path: string;
+    file_count: number;
+    symbol_count: number;
+    languages: string[];
+}
+export interface RepoOutlineResult {
+    directories: DirectoryOutline[];
+    total_symbols: number;
+    total_files: number;
+    languages: Record<string, number>;
+}
+/**
+ * Get a nested file tree for a repository.
+ * Supports filtering by path prefix, name pattern, and depth.
+ *
+ * When `compact=true`, returns a flat sorted list of `{ path, symbols }`
+ * entries instead of the full nested tree — 10-50x less output.
+ */
+export declare function getFileTree(repo: string, options?: FileTreeOptions): Promise<FileTreeNode[] | CompactFileEntry[]>;
+/**
+ * Get an outline of symbols in a specific file.
+ * Returns symbols sorted by start line, with source stripped for brevity.
+ */
+export declare function getFileOutline(repo: string, filePath: string): Promise<FileOutlineEntry[]>;
+/**
+ * Get a high-level outline of the entire repository.
+ * Groups files by directory with symbol counts and language breakdown.
+ */
+export declare function getRepoOutline(repo: string): Promise<RepoOutlineResult>;
+//# sourceMappingURL=outline-tools.d.ts.map

package/dist/tools/outline-tools.d.ts.map

@@ -0,0 +1 @@
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