codemap-ai 3.6.0 → 3.8.0

package/LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2025 Sahan Nishshanka, JUST ADD AI GmbH
+Copyright (c) 2025 Sahan Nishshanka
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

package/README.md

@@ -149,9 +149,9 @@ Risk Assessment:
 
 ---
 
-### `codemap visualize` - Interactive Impact Visualization ✨ NEW
+### `codemap visualize` - Interactive Impact Visualization ✨ NEW in v3.7
 
-Visualize impact analysis in an interactive web interface:
+Visualize impact analysis in a modern, interactive web interface:
 
 ```bash
 npx codemap-ai visualize
@@ -164,19 +164,21 @@ npx codemap-ai visualize
 4. Shows call chains, severity levels, and affected functions
 
 **Features:**
-- 🎨 Color-coded severity (Red=CRITICAL, Orange=HIGH, Yellow=MEDIUM, Green=LOW)
-- 🔍 Zoom, pan, and explore the call graph
-- 💎 Changed functions highlighted
-- 📊 Impact statistics sidebar
-- 📝 Detailed function information on click
+- 🎨 **Modern Dark UI** - Professional dark theme with shadcn components
+- 📊 **Interactive Graph** - Powered by React Flow with smooth animations
+- 🔍 **Zoom & Pan** - Explore complex call graphs intuitively
+- 💎 **Visual Severity Levels** - Color-coded nodes (Red=CRITICAL, Orange=HIGH, Blue=MEDIUM/LOW)
+- 📝 **Detailed Popups** - Click any node for caller/callee information in a clean modal
+- 🌳 **Smart Layout** - Hierarchical top-to-bottom flow using Dagre algorithm
+- 📂 **Organized Sidebar** - Browse affected files and functions with severity indicators
+- 🎯 **Changed Functions** - Modified functions clearly marked with badges
 
 **Perfect for:**
 - Understanding complex impact chains
 - PR reviews and demos
-- Identifying critical paths
+- Identifying critical paths before refactoring
 - Sharing impact visualizations with team
-
-See [Visualization Guide](./docs/VISUALIZATION.md) for details.
+- Visualizing execution flows at a glance
 
 ---
 
@@ -566,12 +568,10 @@ MIT License - see [LICENSE](LICENSE) file
 
 ## Author
 
-Sahan Nishshanka, JUST ADD AI GmbH
+Sahan Nishshanka
 
 ## Links
 
-- Repository: https://github.com/justaddai/codemap-ai
-- Issues: https://github.com/justaddai/codemap-ai/issues
 - NPM: https://www.npmjs.com/package/codemap-ai
 
 ---

package/dist/{chunk-EEMILSZ4.js → chunk-4BHPAOQQ.js}

@@ -808,7 +808,7 @@ var FlowStorage = class {
    */
   getResolvedCallersWithLocation(nodeId) {
     const stmt = this.db.prepare(`
-      SELECT n.name, n.file_path as file, n.start_line as line
+      SELECT n.id, n.name, n.file_path as file, n.start_line as line
       FROM edges e
       JOIN nodes n ON e.source_id = n.id
       WHERE e.target_id = ? AND e.type = 'calls' AND e.target_id NOT LIKE 'ref:%'
@@ -830,4 +830,4 @@ var FlowStorage = class {
 export {
   FlowStorage
 };
-//# sourceMappingURL=chunk-EEMILSZ4.js.map
+//# sourceMappingURL=chunk-4BHPAOQQ.js.map

package/dist/{chunk-EEMILSZ4.js.map → chunk-4BHPAOQQ.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/flow/storage.ts","../src/flow/storage-schema-phase3.ts"],"sourcesContent":["/**\n * Flow-focused storage for call graphs\n * Simplified from graph/storage.ts with enhanced call resolution\n */\n\nimport Database from \"better-sqlite3\";\nimport type { GraphNode, GraphEdge } from \"../types.js\";\nimport { createPhase3Tables } from \"./storage-schema-phase3.js\";\n\nexport interface CallPath {\n  nodes: Array<{\n    id: string;\n    name: string;\n    file: string;\n    line: number;\n  }>;\n  edges: Array<{\n    from: string;\n    to: string;\n    type: string;\n  }>;\n}\n\nexport class FlowStorage {\n  public db: Database.Database; // Public for builder to access\n\n  constructor(dbPath: string) {\n    this.db = new Database(dbPath);\n    this.initSchema();\n  }\n\n  private initSchema(): void {\n    this.db.exec(`\n      -- Nodes table (enhanced with hash)\n      CREATE TABLE IF NOT EXISTS nodes (\n        id TEXT PRIMARY KEY,\n        type TEXT NOT NULL,\n        name TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        start_line INTEGER NOT NULL,\n        end_line INTEGER NOT NULL,\n        language TEXT NOT NULL,\n        hash TEXT,\n        metadata TEXT\n      );\n\n      -- Edges table (calls and related edges)\n      CREATE TABLE IF NOT EXISTS edges (\n        id TEXT PRIMARY KEY,\n        type TEXT NOT NULL,\n        source_id TEXT NOT NULL,\n        target_id TEXT NOT NULL,\n        metadata TEXT\n      );\n\n      -- Files table\n      CREATE TABLE IF NOT EXISTS files (\n        path TEXT PRIMARY KEY,\n        language TEXT NOT NULL,\n        hash TEXT NOT NULL,\n        analyzed_at TEXT NOT NULL\n      );\n\n      -- Exports: symbols exported by each file\n      CREATE TABLE IF NOT EXISTS exports (\n        file_path TEXT NOT NULL,\n        symbol_name TEXT NOT NULL,\n        node_id TEXT NOT NULL,\n        PRIMARY KEY (file_path, symbol_name)\n      );\n\n      -- Imports: what each file imports and from where\n      CREATE TABLE IF NOT EXISTS imports (\n        file_path TEXT NOT NULL,\n        imported_symbol TEXT NOT NULL,\n        from_module TEXT NOT NULL,\n        resolved_node_id TEXT,\n        line INTEGER NOT NULL\n      );\n\n      -- Containers (Docker services)\n      CREATE TABLE IF NOT EXISTS containers (\n        id TEXT PRIMARY KEY,\n        name TEXT NOT NULL,\n        image TEXT,\n        ports TEXT,\n        environment TEXT,\n        depends_on TEXT,\n        networks TEXT,\n        metadata TEXT\n      );\n\n      -- HTTP Endpoints (API routes)\n      CREATE TABLE IF NOT EXISTS http_endpoints (\n        id TEXT PRIMARY KEY,\n        method TEXT NOT NULL,\n        path TEXT NOT NULL,\n        handler_node_id TEXT,\n        container_id TEXT,\n        middleware TEXT,\n        metadata TEXT\n      );\n\n      -- HTTP Calls (client requests)\n      CREATE TABLE IF NOT EXISTS http_calls (\n        id TEXT PRIMARY KEY,\n        source_node_id TEXT NOT NULL,\n        target_endpoint_id TEXT,\n        url TEXT NOT NULL,\n        method TEXT NOT NULL,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Framework Dependencies (FastAPI Depends, etc.)\n      CREATE TABLE IF NOT EXISTS framework_dependencies (\n        id TEXT PRIMARY KEY,\n        source_node_id TEXT NOT NULL,\n        target_node_id TEXT,\n        framework TEXT NOT NULL,\n        pattern TEXT NOT NULL,\n        parameter_name TEXT,\n        line INTEGER,\n        unresolved_name TEXT,\n        metadata TEXT\n      );\n\n      -- Database Operations\n      CREATE TABLE IF NOT EXISTS database_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        database_type TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        collection TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Message Queue Operations\n      CREATE TABLE IF NOT EXISTS message_queue_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        exchange TEXT,\n        routing_key TEXT,\n        queue TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Variable Type Tracking\n      CREATE TABLE IF NOT EXISTS variable_types (\n        id TEXT PRIMARY KEY,\n        variable_name TEXT NOT NULL,\n        type_name TEXT NOT NULL,\n        scope_node_id TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        line INTEGER NOT NULL,\n        is_parameter BOOLEAN DEFAULT 0,\n        metadata TEXT\n      );\n\n      -- Indexes for fast queries\n      CREATE INDEX IF NOT EXISTS idx_nodes_file ON nodes(file_path);\n      CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name);\n      CREATE INDEX IF NOT EXISTS idx_nodes_hash ON nodes(hash);\n      CREATE INDEX IF NOT EXISTS idx_edges_source ON edges(source_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_target ON edges(target_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_resolved ON edges(target_id) WHERE target_id NOT LIKE 'ref:%';\n      CREATE INDEX IF NOT EXISTS idx_exports_file ON exports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_imports_file ON imports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_http_endpoints_path ON http_endpoints(method, path);\n      CREATE INDEX IF NOT EXISTS idx_http_calls_url ON http_calls(url);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_source ON framework_dependencies(source_node_id);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_target ON framework_dependencies(target_node_id);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_scope ON variable_types(scope_node_id, variable_name);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_file ON variable_types(file_path, variable_name);\n    `);\n\n    // Create Phase 3 tables\n    createPhase3Tables(this.db);\n  }\n\n  // ============ Node Operations ============\n\n  insertNode(node: GraphNode & { hash?: string }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO nodes (id, type, name, file_path, start_line, end_line, language, hash, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      node.id,\n      node.type,\n      node.name,\n      node.filePath,\n      node.startLine,\n      node.endLine,\n      node.language,\n      node.hash || null,\n      node.metadata ? JSON.stringify(node.metadata) : null\n    );\n  }\n\n  getNode(id: string): GraphNode | null {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE id = ?\");\n    const row = stmt.get(id) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return this.rowToNode(row);\n  }\n\n  searchNodesByName(name: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE name = ? OR name LIKE ?\");\n    const rows = stmt.all(name, `%${name}%`) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  getNodesByFile(filePath: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE file_path = ?\");\n    const rows = stmt.all(filePath) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  private rowToNode(row: Record<string, unknown>): GraphNode {\n    return {\n      id: row.id as string,\n      type: row.type as GraphNode[\"type\"],\n      name: row.name as string,\n      filePath: row.file_path as string,\n      startLine: row.start_line as number,\n      endLine: row.end_line as number,\n      language: row.language as string,\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : undefined,\n    };\n  }\n\n  // ============ Edge Operations ============\n\n  insertEdge(edge: GraphEdge): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO edges (id, type, source_id, target_id, metadata)\n      VALUES (?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      edge.id,\n      edge.type,\n      edge.sourceId,\n      edge.targetId,\n      edge.metadata ? JSON.stringify(edge.metadata) : null\n    );\n  }\n\n  // ============ Call Graph Queries ============\n\n  /**\n   * Get all resolved callees (functions this node calls)\n   */\n  getResolvedCallees(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.target_id\n      WHERE e.source_id = ? AND e.type = 'calls' AND e.target_id NOT LIKE 'ref:%'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get all resolved callers (functions that call this node)\n   */\n  getResolvedCallers(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.source_id\n      WHERE e.target_id = ? AND e.type = 'calls'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get impact: all nodes affected by changes to this node (BFS traversal)\n   */\n  getImpactedNodes(nodeId: string, maxDepth: number = 3): GraphNode[] {\n    const visited = new Set<string>();\n    const result: GraphNode[] = [];\n    const queue: Array<{ id: string; depth: number }> = [{ id: nodeId, depth: 0 }];\n\n    while (queue.length > 0) {\n      const { id, depth } = queue.shift()!;\n\n      if (visited.has(id) || depth > maxDepth) continue;\n      visited.add(id);\n\n      const callers = this.getResolvedCallers(id);\n      for (const caller of callers) {\n        if (!visited.has(caller.id)) {\n          result.push(caller);\n          queue.push({ id: caller.id, depth: depth + 1 });\n        }\n      }\n    }\n\n    return result;\n  }\n\n  /**\n   * Trace call path from source to target using BFS\n   */\n  traceCallPath(fromId: string, toId: string): CallPath | null {\n    const visited = new Set<string>();\n    const parent = new Map<string, { nodeId: string; edgeType: string }>();\n    const queue: string[] = [fromId];\n\n    while (queue.length > 0) {\n      const current = queue.shift()!;\n\n      if (current === toId) {\n        // Reconstruct path\n        const path: string[] = [];\n        let node = toId;\n        while (node !== fromId) {\n          path.unshift(node);\n          node = parent.get(node)!.nodeId;\n        }\n        path.unshift(fromId);\n\n        // Get node details\n        const nodes = path.map((id) => {\n          const n = this.getNode(id);\n          return {\n            id: n!.id,\n            name: n!.name,\n            file: n!.filePath,\n            line: n!.startLine,\n          };\n        });\n\n        const edges = [];\n        for (let i = 0; i < path.length - 1; i++) {\n          edges.push({\n            from: path[i],\n            to: path[i + 1],\n            type: 'calls',\n          });\n        }\n\n        return { nodes, edges };\n      }\n\n      if (visited.has(current)) continue;\n      visited.add(current);\n\n      const callees = this.getResolvedCallees(current);\n      for (const callee of callees) {\n        if (!visited.has(callee.id)) {\n          parent.set(callee.id, { nodeId: current, edgeType: 'calls' });\n          queue.push(callee.id);\n        }\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Export/Import Tracking ============\n\n  registerExport(filePath: string, symbolName: string, nodeId: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO exports (file_path, symbol_name, node_id)\n      VALUES (?, ?, ?)\n    `);\n    stmt.run(filePath, symbolName, nodeId);\n  }\n\n  registerImport(filePath: string, symbol: string, fromModule: string, line: number): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO imports (file_path, imported_symbol, from_module, line)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, symbol, fromModule, line);\n  }\n\n  resolveImport(filePath: string, symbol: string): string | null {\n    // Get the import statement\n    const importStmt = this.db.prepare(`\n      SELECT from_module FROM imports WHERE file_path = ? AND imported_symbol = ?\n    `).get(filePath, symbol) as { from_module: string } | undefined;\n\n    if (!importStmt) return null;\n\n    // Convert module path to possible file paths\n    // Examples:\n    // - \"backend.authentication\" -> [\"backend/authentication.py\", \"backend/authentication/__init__.py\"]\n    // - \"..authentication\" -> relative import (handle separately)\n    const modulePath = importStmt.from_module;\n    const possiblePaths = this.resolvePythonModulePath(filePath, modulePath);\n\n    // Try each possible path\n    for (const targetPath of possiblePaths) {\n      const exportStmt = this.db.prepare(`\n        SELECT node_id FROM exports WHERE file_path = ? AND symbol_name = ?\n      `).get(targetPath, symbol) as { node_id: string } | undefined;\n\n      if (exportStmt) {\n        return exportStmt.node_id;\n      }\n    }\n\n    return null;\n  }\n\n  /**\n   * Resolve a Python module path to possible file paths\n   * Handles: absolute imports, relative imports, __init__.py\n   */\n  private resolvePythonModulePath(currentFile: string, modulePath: string): string[] {\n    const possiblePaths: string[] = [];\n\n    // Handle relative imports (from . import x, from .. import y)\n    if (modulePath.startsWith(\".\")) {\n      const currentDir = currentFile.substring(0, currentFile.lastIndexOf(\"/\"));\n      const depth = modulePath.match(/^\\.+/)?.[0].length || 0;\n      const moduleName = modulePath.replace(/^\\.+/, \"\");\n\n      // Go up directories based on depth\n      let targetDir = currentDir;\n      for (let i = 1; i < depth; i++) {\n        const lastSlash = targetDir.lastIndexOf(\"/\");\n        if (lastSlash > 0) {\n          targetDir = targetDir.substring(0, lastSlash);\n        }\n      }\n\n      if (moduleName) {\n        const relativePath = moduleName.replace(/\\./g, \"/\");\n        possiblePaths.push(`${targetDir}/${relativePath}.py`);\n        possiblePaths.push(`${targetDir}/${relativePath}/__init__.py`);\n      } else {\n        possiblePaths.push(`${targetDir}/__init__.py`);\n      }\n    } else {\n      // Absolute import - convert dots to slashes\n      const pathComponents = modulePath.split(\".\");\n\n      // Try different interpretations\n      // 1. Full path as file: backend.authentication -> backend/authentication.py\n      const filePath = pathComponents.join(\"/\");\n      possiblePaths.push(`${filePath}.py`);\n      possiblePaths.push(`${filePath}/__init__.py`);\n\n      // 2. Try with src/ prefix (common pattern)\n      possiblePaths.push(`src/${filePath}.py`);\n      possiblePaths.push(`src/${filePath}/__init__.py`);\n\n      // 3. Query actual files to find match\n      // Get all files that end with the last component\n      const lastComponent = pathComponents[pathComponents.length - 1];\n      const matchingFiles = this.db.prepare(`\n        SELECT DISTINCT file_path FROM exports\n        WHERE file_path LIKE ?\n      `).all(`%/${lastComponent}.py`) as Array<{ file_path: string }>;\n\n      for (const file of matchingFiles) {\n        // Check if the file path ends with the module path\n        const normalizedFilePath = file.file_path.replace(/\\\\/g, \"/\");\n        if (normalizedFilePath.includes(filePath)) {\n          possiblePaths.push(normalizedFilePath);\n        }\n      }\n    }\n\n    return possiblePaths;\n  }\n\n  /**\n   * Resolve a class method call like ClassName.method_name\n   * Handles: static methods, class methods, imported classes\n   */\n  resolveClassMethod(className: string, methodName: string, callerFilePath: string): string | null {\n    // Strategy 1: Check if the class is imported in the caller file\n    const classNodeId = this.resolveImport(callerFilePath, className);\n\n    if (classNodeId) {\n      // Find the method within this class\n      const methods = this.db.prepare(`\n        SELECT target_id FROM edges\n        WHERE source_id = ? AND type = 'contains'\n      `).all(classNodeId) as Array<{ target_id: string }>;\n\n      for (const edge of methods) {\n        const methodNode = this.getNode(edge.target_id);\n        if (methodNode && methodNode.name === methodName) {\n          return methodNode.id;\n        }\n      }\n    }\n\n    // Strategy 2: Search for class in the same file\n    const classNode = this.db.prepare(`\n      SELECT id FROM nodes\n      WHERE file_path = ? AND name = ? AND type = 'class'\n    `).get(callerFilePath, className) as { id: string } | undefined;\n\n    if (classNode) {\n      // Find the method within this class\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(classNode.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    // Strategy 3: Search globally for the class\n    const allClasses = this.db.prepare(`\n      SELECT id FROM nodes WHERE name = ? AND type = 'class'\n    `).all(className) as Array<{ id: string }>;\n\n    for (const cls of allClasses) {\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(cls.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Variable Type Tracking ============\n\n  /**\n   * Register a variable type (from assignment or parameter)\n   */\n  registerVariableType(\n    variableName: string,\n    typeName: string,\n    scopeNodeId: string,\n    filePath: string,\n    line: number,\n    isParameter: boolean = false\n  ): void {\n    const id = `${scopeNodeId}:var:${variableName}`;\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO variable_types\n        (id, variable_name, type_name, scope_node_id, file_path, line, is_parameter)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(id, variableName, typeName, scopeNodeId, filePath, line, isParameter ? 1 : 0);\n  }\n\n  /**\n   * Resolve variable.method to actual method node\n   * Example: user.get_name() where user is of type User\n   */\n  resolveVariableMethod(variableName: string, methodName: string, scopeNodeId: string): string | null {\n    // Special case: self.method calls - resolve to methods in parent class\n    if (variableName === \"self\") {\n      return this.resolveSelfMethod(methodName, scopeNodeId);\n    }\n\n    // Get the variable's type\n    const varType = this.db.prepare(`\n      SELECT type_name FROM variable_types\n      WHERE scope_node_id = ? AND variable_name = ?\n    `).get(scopeNodeId, variableName) as { type_name: string } | undefined;\n\n    if (!varType) {\n      return null;\n    }\n\n    // Now resolve ClassName.method_name\n    return this.resolveClassMethod(varType.type_name, methodName, \"\");\n  }\n\n  /**\n   * Resolve self.method() calls to methods in the same class\n   */\n  private resolveSelfMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of this method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Find the method with this name in the same class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(parentClass.source_id, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  /**\n   * Resolve super().method() calls to parent class methods\n   */\n  resolveSuperMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of the current method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Get the class node\n    const classNode = this.getNode(parentClass.source_id);\n    if (!classNode || classNode.type !== 'class') {\n      return null;\n    }\n\n    // Find the parent class (via extends edge)\n    const baseClass = this.db.prepare(`\n      SELECT target_id FROM edges\n      WHERE source_id = ? AND type = 'extends'\n    `).get(classNode.id) as { target_id: string } | undefined;\n\n    if (!baseClass) {\n      return null;\n    }\n\n    // The target might be a ref, resolve it first\n    let baseClassId = baseClass.target_id;\n    if (baseClassId.startsWith('ref:')) {\n      const baseClassName = baseClassId.replace('ref:', '');\n      // Search for the class by name\n      const resolvedClass = this.db.prepare(`\n        SELECT id FROM nodes WHERE name = ? AND type = 'class'\n      `).get(baseClassName) as { id: string } | undefined;\n\n      if (!resolvedClass) {\n        return null;\n      }\n      baseClassId = resolvedClass.id;\n    }\n\n    // Find the method in the parent class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(baseClassId, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  // ============ File Operations ============\n\n  upsertFile(filePath: string, language: string, hash: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO files (path, language, hash, analyzed_at)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, language, hash, new Date().toISOString());\n  }\n\n  getFileHash(filePath: string): string | null {\n    const stmt = this.db.prepare(\"SELECT hash FROM files WHERE path = ?\");\n    const row = stmt.get(filePath) as { hash: string } | undefined;\n    return row?.hash || null;\n  }\n\n  deleteFileData(filePath: string): void {\n    this.db.prepare(\"DELETE FROM nodes WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM exports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM imports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM files WHERE path = ?\").run(filePath);\n  }\n\n  // ============ Stats ============\n\n  getStats(): {\n    totalFiles: number;\n    totalNodes: number;\n    totalEdges: number;\n    resolvedCalls: number;\n    unresolvedCalls: number;\n    httpEndpoints: number;\n    frameworkDependencies: number;\n    resolvedDependencies: number;\n    containers: number;\n  } {\n    const totalFiles = (this.db.prepare(\"SELECT COUNT(*) as count FROM files\").get() as { count: number }).count;\n    const totalNodes = (this.db.prepare(\"SELECT COUNT(*) as count FROM nodes\").get() as { count: number }).count;\n    const totalEdges = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls'\").get() as { count: number }).count;\n    const resolvedCalls = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls' AND target_id NOT LIKE 'ref:%'\").get() as { count: number }).count;\n    const unresolvedCalls = totalEdges - resolvedCalls;\n    const httpEndpoints = (this.db.prepare(\"SELECT COUNT(*) as count FROM http_endpoints\").get() as { count: number }).count;\n    const frameworkDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies\").get() as { count: number }).count;\n    const resolvedDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies WHERE target_node_id IS NOT NULL\").get() as { count: number }).count;\n    const containers = (this.db.prepare(\"SELECT COUNT(*) as count FROM containers\").get() as { count: number }).count;\n\n    return {\n      totalFiles,\n      totalNodes,\n      totalEdges,\n      resolvedCalls,\n      unresolvedCalls,\n      httpEndpoints,\n      frameworkDependencies,\n      resolvedDependencies,\n      containers,\n    };\n  }\n\n  // ============ Container Operations ============\n\n  insertContainer(container: {\n    id: string;\n    name: string;\n    image?: string;\n    ports?: Array<{ host: number; container: number }>;\n    environment?: Record<string, string>;\n    depends_on?: string[];\n    networks?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO containers (id, name, image, ports, environment, depends_on, networks, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      container.id,\n      container.name,\n      container.image || null,\n      container.ports ? 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JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  getAllContainers(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM containers\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      name: row.name,\n      image: row.image,\n      ports: row.ports ? JSON.parse(row.ports as string) : [],\n      environment: row.environment ? JSON.parse(row.environment as string) : {},\n      depends_on: row.depends_on ? JSON.parse(row.depends_on as string) : [],\n      networks: row.networks ? JSON.parse(row.networks as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  // ============ HTTP Endpoint Operations ============\n\n  insertHttpEndpoint(endpoint: {\n    id: string;\n    method: string;\n    path: string;\n    handler_node_id?: string;\n    container_id?: string;\n    middleware?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO http_endpoints (id, method, path, handler_node_id, container_id, middleware, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      endpoint.id,\n      endpoint.method,\n      endpoint.path,\n      endpoint.handler_node_id || null,\n      endpoint.container_id || null,\n      endpoint.middleware ? JSON.stringify(endpoint.middleware) : null,\n      endpoint.metadata ? JSON.stringify(endpoint.metadata) : null\n    );\n  }\n\n  insertDatabaseOperation(dbOp: {\n    id: string;\n    node_id: string;\n    database_type: string;\n    operation: string;\n    collection?: string;\n    line?: number;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO database_operations (id, node_id, database_type, operation, collection, line, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dbOp.id,\n      dbOp.node_id,\n      dbOp.database_type,\n      dbOp.operation,\n      dbOp.collection || null,\n      dbOp.line || null,\n      dbOp.metadata ? JSON.stringify(dbOp.metadata) : null\n    );\n  }\n\n  findHttpEndpoint(method: string, path: string): any | null {\n    const stmt = this.db.prepare(\"SELECT * FROM http_endpoints WHERE method = ? AND path = ?\");\n    const row = stmt.get(method, path) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return {\n      id: row.id,\n      method: row.method,\n      path: row.path,\n      handler_node_id: row.handler_node_id,\n      container_id: row.container_id,\n      middleware: row.middleware ? JSON.parse(row.middleware as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  // ============ Framework Dependency Operations ============\n\n  insertFrameworkDependency(dep: {\n    id: string;\n    source_node_id: string;\n    target_node_id?: string;\n    framework: string;\n    pattern: string;\n    parameter_name?: string;\n    line?: number;\n    unresolved_name?: string;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO framework_dependencies\n      (id, source_node_id, target_node_id, framework, pattern, parameter_name, line, unresolved_name, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dep.id,\n      dep.source_node_id,\n      dep.target_node_id || null,\n      dep.framework,\n      dep.pattern,\n      dep.parameter_name || null,\n      dep.line || null,\n      dep.unresolved_name || null,\n      dep.metadata ? 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JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  getAllUnresolvedDependencies(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM framework_dependencies WHERE target_node_id IS NULL\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      source_node_id: row.source_node_id,\n      framework: row.framework,\n      pattern: row.pattern,\n      unresolved_name: row.unresolved_name,\n      line: row.line,\n    }));\n  }\n\n  updateFrameworkDependencyTarget(id: string, targetNodeId: string): void {\n    const stmt = this.db.prepare(\"UPDATE framework_dependencies SET target_node_id = ? 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NULL,\n        name TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        start_line INTEGER NOT NULL,\n        end_line INTEGER NOT NULL,\n        language TEXT NOT NULL,\n        hash TEXT,\n        metadata TEXT\n      );\n\n      -- Edges table (calls and related edges)\n      CREATE TABLE IF NOT EXISTS edges (\n        id TEXT PRIMARY KEY,\n        type TEXT NOT NULL,\n        source_id TEXT NOT NULL,\n        target_id TEXT NOT NULL,\n        metadata TEXT\n      );\n\n      -- Files table\n      CREATE TABLE IF NOT EXISTS files (\n        path TEXT PRIMARY KEY,\n        language TEXT NOT NULL,\n        hash TEXT NOT NULL,\n        analyzed_at TEXT NOT NULL\n      );\n\n      -- Exports: symbols exported by each file\n      CREATE TABLE IF NOT EXISTS exports (\n        file_path TEXT NOT NULL,\n        symbol_name TEXT NOT NULL,\n        node_id TEXT NOT NULL,\n        PRIMARY KEY (file_path, symbol_name)\n      );\n\n      -- Imports: what each file imports and from where\n  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target_endpoint_id TEXT,\n        url TEXT NOT NULL,\n        method TEXT NOT NULL,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Framework Dependencies (FastAPI Depends, etc.)\n      CREATE TABLE IF NOT EXISTS framework_dependencies (\n        id TEXT PRIMARY KEY,\n        source_node_id TEXT NOT NULL,\n        target_node_id TEXT,\n        framework TEXT NOT NULL,\n        pattern TEXT NOT NULL,\n        parameter_name TEXT,\n        line INTEGER,\n        unresolved_name TEXT,\n        metadata TEXT\n      );\n\n      -- Database Operations\n      CREATE TABLE IF NOT EXISTS database_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        database_type TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        collection TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Message Queue Operations\n      CREATE TABLE IF NOT EXISTS message_queue_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        exchange TEXT,\n        routing_key TEXT,\n        queue TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Variable Type Tracking\n      CREATE TABLE IF NOT EXISTS variable_types (\n        id TEXT PRIMARY KEY,\n        variable_name TEXT NOT NULL,\n        type_name TEXT NOT NULL,\n        scope_node_id TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        line INTEGER NOT NULL,\n        is_parameter BOOLEAN DEFAULT 0,\n        metadata TEXT\n      );\n\n      -- Indexes for fast queries\n      CREATE INDEX IF NOT EXISTS idx_nodes_file ON nodes(file_path);\n      CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name);\n      CREATE INDEX IF NOT EXISTS idx_nodes_hash ON nodes(hash);\n      CREATE INDEX IF NOT EXISTS idx_edges_source ON edges(source_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_target ON edges(target_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_resolved ON edges(target_id) WHERE target_id NOT LIKE 'ref:%';\n      CREATE INDEX IF NOT EXISTS idx_exports_file ON exports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_imports_file ON imports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_http_endpoints_path ON http_endpoints(method, path);\n      CREATE INDEX IF NOT EXISTS idx_http_calls_url ON http_calls(url);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_source ON framework_dependencies(source_node_id);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_target ON framework_dependencies(target_node_id);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_scope ON variable_types(scope_node_id, variable_name);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_file ON variable_types(file_path, variable_name);\n    `);\n\n    // Create Phase 3 tables\n    createPhase3Tables(this.db);\n  }\n\n  // ============ Node Operations ============\n\n  insertNode(node: GraphNode & { hash?: string }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO nodes (id, type, name, file_path, start_line, end_line, language, hash, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      node.id,\n      node.type,\n      node.name,\n      node.filePath,\n      node.startLine,\n      node.endLine,\n      node.language,\n      node.hash || null,\n      node.metadata ? JSON.stringify(node.metadata) : null\n    );\n  }\n\n  getNode(id: string): GraphNode | null {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE id = ?\");\n    const row = stmt.get(id) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return this.rowToNode(row);\n  }\n\n  searchNodesByName(name: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE name = ? OR name LIKE ?\");\n    const rows = stmt.all(name, `%${name}%`) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  getNodesByFile(filePath: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE file_path = ?\");\n    const rows = stmt.all(filePath) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  private rowToNode(row: Record<string, unknown>): GraphNode {\n    return {\n      id: row.id as string,\n      type: row.type as GraphNode[\"type\"],\n      name: row.name as string,\n      filePath: row.file_path as string,\n      startLine: row.start_line as number,\n      endLine: row.end_line as number,\n      language: row.language as string,\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : undefined,\n    };\n  }\n\n  // ============ Edge Operations ============\n\n  insertEdge(edge: GraphEdge): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO edges (id, type, source_id, target_id, metadata)\n      VALUES (?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      edge.id,\n      edge.type,\n      edge.sourceId,\n      edge.targetId,\n      edge.metadata ? JSON.stringify(edge.metadata) : null\n    );\n  }\n\n  // ============ Call Graph Queries ============\n\n  /**\n   * Get all resolved callees (functions this node calls)\n   */\n  getResolvedCallees(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.target_id\n      WHERE e.source_id = ? AND e.type = 'calls' AND e.target_id NOT LIKE 'ref:%'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get all resolved callers (functions that call this node)\n   */\n  getResolvedCallers(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.source_id\n      WHERE e.target_id = ? AND e.type = 'calls'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get impact: all nodes affected by changes to this node (BFS traversal)\n   */\n  getImpactedNodes(nodeId: string, maxDepth: number = 3): GraphNode[] {\n    const visited = new Set<string>();\n    const result: GraphNode[] = [];\n    const queue: Array<{ id: string; depth: number }> = [{ id: nodeId, depth: 0 }];\n\n    while (queue.length > 0) {\n      const { id, depth } = queue.shift()!;\n\n      if (visited.has(id) || depth > maxDepth) continue;\n      visited.add(id);\n\n      const callers = this.getResolvedCallers(id);\n      for (const caller of callers) {\n        if (!visited.has(caller.id)) {\n          result.push(caller);\n          queue.push({ id: caller.id, depth: depth + 1 });\n        }\n      }\n    }\n\n    return result;\n  }\n\n  /**\n   * Trace call path from source to target using BFS\n   */\n  traceCallPath(fromId: string, toId: string): CallPath | null {\n    const visited = new Set<string>();\n    const parent = new Map<string, { nodeId: string; edgeType: string }>();\n    const queue: string[] = [fromId];\n\n    while (queue.length > 0) {\n      const current = queue.shift()!;\n\n      if (current === toId) {\n        // Reconstruct path\n        const path: string[] = [];\n        let node = toId;\n        while (node !== fromId) {\n          path.unshift(node);\n          node = parent.get(node)!.nodeId;\n        }\n        path.unshift(fromId);\n\n        // Get node details\n        const nodes = path.map((id) => {\n          const n = this.getNode(id);\n          return {\n            id: n!.id,\n            name: n!.name,\n            file: n!.filePath,\n            line: n!.startLine,\n          };\n        });\n\n        const edges = [];\n        for (let i = 0; i < path.length - 1; i++) {\n          edges.push({\n            from: path[i],\n            to: path[i + 1],\n            type: 'calls',\n          });\n        }\n\n        return { nodes, edges };\n      }\n\n      if (visited.has(current)) continue;\n      visited.add(current);\n\n      const callees = this.getResolvedCallees(current);\n      for (const callee of callees) {\n        if (!visited.has(callee.id)) {\n          parent.set(callee.id, { nodeId: current, edgeType: 'calls' });\n          queue.push(callee.id);\n        }\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Export/Import Tracking ============\n\n  registerExport(filePath: string, symbolName: string, nodeId: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO exports (file_path, symbol_name, node_id)\n      VALUES (?, ?, ?)\n    `);\n    stmt.run(filePath, symbolName, nodeId);\n  }\n\n  registerImport(filePath: string, symbol: string, fromModule: string, line: number): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO imports (file_path, imported_symbol, from_module, line)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, symbol, fromModule, line);\n  }\n\n  resolveImport(filePath: string, symbol: string): string | null {\n    // Get the import statement\n    const importStmt = this.db.prepare(`\n      SELECT from_module FROM imports WHERE file_path = ? AND imported_symbol = ?\n    `).get(filePath, symbol) as { from_module: string } | undefined;\n\n    if (!importStmt) return null;\n\n    // Convert module path to possible file paths\n    // Examples:\n    // - \"backend.authentication\" -> [\"backend/authentication.py\", \"backend/authentication/__init__.py\"]\n    // - \"..authentication\" -> relative import (handle separately)\n    const modulePath = importStmt.from_module;\n    const possiblePaths = this.resolvePythonModulePath(filePath, modulePath);\n\n    // Try each possible path\n    for (const targetPath of possiblePaths) {\n      const exportStmt = this.db.prepare(`\n        SELECT node_id FROM exports WHERE file_path = ? AND symbol_name = ?\n      `).get(targetPath, symbol) as { node_id: string } | undefined;\n\n      if (exportStmt) {\n        return exportStmt.node_id;\n      }\n    }\n\n    return null;\n  }\n\n  /**\n   * Resolve a Python module path to possible file paths\n   * Handles: absolute imports, relative imports, __init__.py\n   */\n  private resolvePythonModulePath(currentFile: string, modulePath: string): string[] {\n    const possiblePaths: string[] = [];\n\n    // Handle relative imports (from . import x, from .. import y)\n    if (modulePath.startsWith(\".\")) {\n      const currentDir = currentFile.substring(0, currentFile.lastIndexOf(\"/\"));\n      const depth = modulePath.match(/^\\.+/)?.[0].length || 0;\n      const moduleName = modulePath.replace(/^\\.+/, \"\");\n\n      // Go up directories based on depth\n      let targetDir = currentDir;\n      for (let i = 1; i < depth; i++) {\n        const lastSlash = targetDir.lastIndexOf(\"/\");\n        if (lastSlash > 0) {\n          targetDir = targetDir.substring(0, lastSlash);\n        }\n      }\n\n      if (moduleName) {\n        const relativePath = moduleName.replace(/\\./g, \"/\");\n        possiblePaths.push(`${targetDir}/${relativePath}.py`);\n        possiblePaths.push(`${targetDir}/${relativePath}/__init__.py`);\n      } else {\n        possiblePaths.push(`${targetDir}/__init__.py`);\n      }\n    } else {\n      // Absolute import - convert dots to slashes\n      const pathComponents = modulePath.split(\".\");\n\n      // Try different interpretations\n      // 1. Full path as file: backend.authentication -> backend/authentication.py\n      const filePath = pathComponents.join(\"/\");\n      possiblePaths.push(`${filePath}.py`);\n      possiblePaths.push(`${filePath}/__init__.py`);\n\n      // 2. Try with src/ prefix (common pattern)\n      possiblePaths.push(`src/${filePath}.py`);\n      possiblePaths.push(`src/${filePath}/__init__.py`);\n\n      // 3. Query actual files to find match\n      // Get all files that end with the last component\n      const lastComponent = pathComponents[pathComponents.length - 1];\n      const matchingFiles = this.db.prepare(`\n        SELECT DISTINCT file_path FROM exports\n        WHERE file_path LIKE ?\n      `).all(`%/${lastComponent}.py`) as Array<{ file_path: string }>;\n\n      for (const file of matchingFiles) {\n        // Check if the file path ends with the module path\n        const normalizedFilePath = file.file_path.replace(/\\\\/g, \"/\");\n        if (normalizedFilePath.includes(filePath)) {\n          possiblePaths.push(normalizedFilePath);\n        }\n      }\n    }\n\n    return possiblePaths;\n  }\n\n  /**\n   * Resolve a class method call like ClassName.method_name\n   * Handles: static methods, class methods, imported classes\n   */\n  resolveClassMethod(className: string, methodName: string, callerFilePath: string): string | null {\n    // Strategy 1: Check if the class is imported in the caller file\n    const classNodeId = this.resolveImport(callerFilePath, className);\n\n    if (classNodeId) {\n      // Find the method within this class\n      const methods = this.db.prepare(`\n        SELECT target_id FROM edges\n        WHERE source_id = ? AND type = 'contains'\n      `).all(classNodeId) as Array<{ target_id: string }>;\n\n      for (const edge of methods) {\n        const methodNode = this.getNode(edge.target_id);\n        if (methodNode && methodNode.name === methodName) {\n          return methodNode.id;\n        }\n      }\n    }\n\n    // Strategy 2: Search for class in the same file\n    const classNode = this.db.prepare(`\n      SELECT id FROM nodes\n      WHERE file_path = ? AND name = ? AND type = 'class'\n    `).get(callerFilePath, className) as { id: string } | undefined;\n\n    if (classNode) {\n      // Find the method within this class\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(classNode.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    // Strategy 3: Search globally for the class\n    const allClasses = this.db.prepare(`\n      SELECT id FROM nodes WHERE name = ? AND type = 'class'\n    `).all(className) as Array<{ id: string }>;\n\n    for (const cls of allClasses) {\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(cls.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Variable Type Tracking ============\n\n  /**\n   * Register a variable type (from assignment or parameter)\n   */\n  registerVariableType(\n    variableName: string,\n    typeName: string,\n    scopeNodeId: string,\n    filePath: string,\n    line: number,\n    isParameter: boolean = false\n  ): void {\n    const id = `${scopeNodeId}:var:${variableName}`;\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO variable_types\n        (id, variable_name, type_name, scope_node_id, file_path, line, is_parameter)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(id, variableName, typeName, scopeNodeId, filePath, line, isParameter ? 1 : 0);\n  }\n\n  /**\n   * Resolve variable.method to actual method node\n   * Example: user.get_name() where user is of type User\n   */\n  resolveVariableMethod(variableName: string, methodName: string, scopeNodeId: string): string | null {\n    // Special case: self.method calls - resolve to methods in parent class\n    if (variableName === \"self\") {\n      return this.resolveSelfMethod(methodName, scopeNodeId);\n    }\n\n    // Get the variable's type\n    const varType = this.db.prepare(`\n      SELECT type_name FROM variable_types\n      WHERE scope_node_id = ? AND variable_name = ?\n    `).get(scopeNodeId, variableName) as { type_name: string } | undefined;\n\n    if (!varType) {\n      return null;\n    }\n\n    // Now resolve ClassName.method_name\n    return this.resolveClassMethod(varType.type_name, methodName, \"\");\n  }\n\n  /**\n   * Resolve self.method() calls to methods in the same class\n   */\n  private resolveSelfMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of this method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Find the method with this name in the same class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(parentClass.source_id, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  /**\n   * Resolve super().method() calls to parent class methods\n   */\n  resolveSuperMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of the current method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Get the class node\n    const classNode = this.getNode(parentClass.source_id);\n    if (!classNode || classNode.type !== 'class') {\n      return null;\n    }\n\n    // Find the parent class (via extends edge)\n    const baseClass = this.db.prepare(`\n      SELECT target_id FROM edges\n      WHERE source_id = ? AND type = 'extends'\n    `).get(classNode.id) as { target_id: string } | undefined;\n\n    if (!baseClass) {\n      return null;\n    }\n\n    // The target might be a ref, resolve it first\n    let baseClassId = baseClass.target_id;\n    if (baseClassId.startsWith('ref:')) {\n      const baseClassName = baseClassId.replace('ref:', '');\n      // Search for the class by name\n      const resolvedClass = this.db.prepare(`\n        SELECT id FROM nodes WHERE name = ? AND type = 'class'\n      `).get(baseClassName) as { id: string } | undefined;\n\n      if (!resolvedClass) {\n        return null;\n      }\n      baseClassId = resolvedClass.id;\n    }\n\n    // Find the method in the parent class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(baseClassId, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  // ============ File Operations ============\n\n  upsertFile(filePath: string, language: string, hash: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO files (path, language, hash, analyzed_at)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, language, hash, new Date().toISOString());\n  }\n\n  getFileHash(filePath: string): string | null {\n    const stmt = this.db.prepare(\"SELECT hash FROM files WHERE path = ?\");\n    const row = stmt.get(filePath) as { hash: string } | undefined;\n    return row?.hash || null;\n  }\n\n  deleteFileData(filePath: string): void {\n    this.db.prepare(\"DELETE FROM nodes WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM exports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM imports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM files WHERE path = ?\").run(filePath);\n  }\n\n  // ============ Stats ============\n\n  getStats(): {\n    totalFiles: number;\n    totalNodes: number;\n    totalEdges: number;\n    resolvedCalls: number;\n    unresolvedCalls: number;\n    httpEndpoints: number;\n    frameworkDependencies: number;\n    resolvedDependencies: number;\n    containers: number;\n  } {\n    const totalFiles = (this.db.prepare(\"SELECT COUNT(*) as count FROM files\").get() as { count: number }).count;\n    const totalNodes = (this.db.prepare(\"SELECT COUNT(*) as count FROM nodes\").get() as { count: number }).count;\n    const totalEdges = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls'\").get() as { count: number }).count;\n    const resolvedCalls = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls' AND target_id NOT LIKE 'ref:%'\").get() as { count: number }).count;\n    const unresolvedCalls = totalEdges - resolvedCalls;\n    const httpEndpoints = (this.db.prepare(\"SELECT COUNT(*) as count FROM http_endpoints\").get() as { count: number }).count;\n    const frameworkDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies\").get() as { count: number }).count;\n    const resolvedDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies WHERE target_node_id IS NOT NULL\").get() as { count: number }).count;\n    const containers = (this.db.prepare(\"SELECT COUNT(*) as count FROM containers\").get() as { count: number }).count;\n\n    return {\n      totalFiles,\n      totalNodes,\n      totalEdges,\n      resolvedCalls,\n      unresolvedCalls,\n      httpEndpoints,\n      frameworkDependencies,\n      resolvedDependencies,\n      containers,\n    };\n  }\n\n  // ============ Container Operations ============\n\n  insertContainer(container: {\n    id: string;\n    name: string;\n    image?: string;\n    ports?: Array<{ host: number; container: number }>;\n    environment?: Record<string, string>;\n    depends_on?: string[];\n    networks?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO containers (id, name, image, ports, environment, depends_on, networks, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      container.id,\n      container.name,\n      container.image || null,\n      container.ports ? JSON.stringify(container.ports) : null,\n      container.environment ? JSON.stringify(container.environment) : null,\n      container.depends_on ? JSON.stringify(container.depends_on) : null,\n      container.networks ? JSON.stringify(container.networks) : null,\n      container.metadata ? JSON.stringify(container.metadata) : null\n    );\n  }\n\n  getContainer(id: string): any | null {\n    const stmt = this.db.prepare(\"SELECT * FROM containers WHERE id = ?\");\n    const row = stmt.get(id) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return {\n      id: row.id,\n      name: row.name,\n      image: row.image,\n      ports: row.ports ? JSON.parse(row.ports as string) : [],\n      environment: row.environment ? JSON.parse(row.environment as string) : {},\n      depends_on: row.depends_on ? JSON.parse(row.depends_on as string) : [],\n      networks: row.networks ? JSON.parse(row.networks as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  getAllContainers(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM containers\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      name: row.name,\n      image: row.image,\n      ports: row.ports ? JSON.parse(row.ports as string) : [],\n      environment: row.environment ? JSON.parse(row.environment as string) : {},\n      depends_on: row.depends_on ? JSON.parse(row.depends_on as string) : [],\n      networks: row.networks ? JSON.parse(row.networks as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  // ============ HTTP Endpoint Operations ============\n\n  insertHttpEndpoint(endpoint: {\n    id: string;\n    method: string;\n    path: string;\n    handler_node_id?: string;\n    container_id?: string;\n    middleware?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO http_endpoints (id, method, path, handler_node_id, container_id, middleware, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      endpoint.id,\n      endpoint.method,\n      endpoint.path,\n      endpoint.handler_node_id || null,\n      endpoint.container_id || null,\n      endpoint.middleware ? JSON.stringify(endpoint.middleware) : null,\n      endpoint.metadata ? JSON.stringify(endpoint.metadata) : null\n    );\n  }\n\n  insertDatabaseOperation(dbOp: {\n    id: string;\n    node_id: string;\n    database_type: string;\n    operation: string;\n    collection?: string;\n    line?: number;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO database_operations (id, node_id, database_type, operation, collection, line, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dbOp.id,\n      dbOp.node_id,\n      dbOp.database_type,\n      dbOp.operation,\n      dbOp.collection || null,\n      dbOp.line || null,\n      dbOp.metadata ? JSON.stringify(dbOp.metadata) : null\n    );\n  }\n\n  findHttpEndpoint(method: string, path: string): any | null {\n    const stmt = this.db.prepare(\"SELECT * FROM http_endpoints WHERE method = ? AND path = ?\");\n    const row = stmt.get(method, path) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return {\n      id: row.id,\n      method: row.method,\n      path: row.path,\n      handler_node_id: row.handler_node_id,\n      container_id: row.container_id,\n      middleware: row.middleware ? JSON.parse(row.middleware as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  // ============ Framework Dependency Operations ============\n\n  insertFrameworkDependency(dep: {\n    id: string;\n    source_node_id: string;\n    target_node_id?: string;\n    framework: string;\n    pattern: string;\n    parameter_name?: string;\n    line?: number;\n    unresolved_name?: string;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO framework_dependencies\n      (id, source_node_id, target_node_id, framework, pattern, parameter_name, line, unresolved_name, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dep.id,\n      dep.source_node_id,\n      dep.target_node_id || null,\n      dep.framework,\n      dep.pattern,\n      dep.parameter_name || null,\n      dep.line || null,\n      dep.unresolved_name || null,\n      dep.metadata ? JSON.stringify(dep.metadata) : null\n    );\n  }\n\n  getFrameworkDependencies(sourceNodeId: string): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM framework_dependencies WHERE source_node_id = ?\");\n    const rows = stmt.all(sourceNodeId) as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      source_node_id: row.source_node_id,\n      target_node_id: row.target_node_id,\n      framework: row.framework,\n      pattern: row.pattern,\n      parameter_name: row.parameter_name,\n      line: row.line,\n      unresolved_name: row.unresolved_name,\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  getAllUnresolvedDependencies(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM framework_dependencies WHERE target_node_id IS NULL\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      source_node_id: row.source_node_id,\n      framework: row.framework,\n      pattern: row.pattern,\n      unresolved_name: row.unresolved_name,\n      line: row.line,\n    }));\n  }\n\n  updateFrameworkDependencyTarget(id: string, targetNodeId: string): void {\n    const stmt = this.db.prepare(\"UPDATE framework_dependencies SET target_node_id = ? 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object_name TEXT NOT NULL,\n      property_path TEXT NOT NULL,\n      full_path TEXT NOT NULL,\n      access_type TEXT NOT NULL,\n      file_path TEXT NOT NULL,\n      line INTEGER NOT NULL,\n      FOREIGN KEY (scope_node_id) REFERENCES nodes(id)\n    );\n  `);\n\n  // Return shapes table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS return_shapes (\n      id TEXT PRIMARY KEY,\n      function_id TEXT NOT NULL,\n      return_type TEXT,\n      object_shape TEXT,\n      line INTEGER NOT NULL,\n      return_expression TEXT,\n      FOREIGN KEY (function_id) REFERENCES nodes(id)\n    );\n  `);\n\n  // Data flows table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS data_flows (\n      id TEXT PRIMARY KEY,\n      source_id TEXT NOT NULL,\n      target_id TEXT NOT NULL,\n      data_type TEXT NOT NULL,\n      shape TEXT,\n      flow_type TEXT NOT NULL,\n      line INTEGER\n    );\n  `);\n\n  // Create indexes for performance\n  db.exec(`\n    CREATE INDEX IF NOT EXISTS idx_property_accesses_path\n      ON property_accesses(full_path);\n\n    CREATE INDEX IF NOT EXISTS idx_property_accesses_scope\n      ON property_accesses(scope_node_id);\n\n    CREATE INDEX IF NOT EXISTS idx_return_shapes_function\n      ON return_shapes(function_id);\n\n    CREATE INDEX IF NOT EXISTS idx_data_flows_source\n      ON data_flows(source_id);\n\n    CREATE INDEX IF NOT EXISTS idx_data_flows_target\n      ON data_flows(target_id);\n  `);\n}\n\n/**\n * Drop Phase 3 tables (for testing/cleanup)\n */\nexport function dropPhase3Tables(db: Database): void {\n  db.exec(`\n    DROP TABLE IF EXISTS data_flows;\n    DROP TABLE IF EXISTS return_shapes;\n    DROP TABLE IF EXISTS property_accesses;\n  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package/dist/{chunk-6TAWVGMT.js → chunk-HKSMTZWU.js}

@@ -2,7 +2,7 @@
 
 import {
   FlowStorage
-} from "./chunk-BRVRY5KT.js";
+} from "./chunk-YEC7G3GL.js";
 
 // src/parsers/base.ts
 var BaseParser = class {
@@ -3536,4 +3536,4 @@ export {
   DEFAULT_CONFIG,
   analyzeImpact
 };
-//# sourceMappingURL=chunk-6TAWVGMT.js.map
+//# sourceMappingURL=chunk-HKSMTZWU.js.map

package/dist/{chunk-BRVRY5KT.js → chunk-YEC7G3GL.js}

@@ -811,7 +811,7 @@ var FlowStorage = class {
    */
   getResolvedCallersWithLocation(nodeId) {
     const stmt = this.db.prepare(`
-      SELECT n.name, n.file_path as file, n.start_line as line
+      SELECT n.id, n.name, n.file_path as file, n.start_line as line
       FROM edges e
       JOIN nodes n ON e.source_id = n.id
       WHERE e.target_id = ? AND e.type = 'calls' AND e.target_id NOT LIKE 'ref:%'
@@ -833,4 +833,4 @@ var FlowStorage = class {
 export {
   FlowStorage
 };
-//# sourceMappingURL=chunk-BRVRY5KT.js.map
+//# sourceMappingURL=chunk-YEC7G3GL.js.map

package/dist/{chunk-BRVRY5KT.js.map → chunk-YEC7G3GL.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/flow/storage.ts","../src/flow/storage-schema-phase3.ts"],"sourcesContent":["/**\n * Flow-focused storage for call graphs\n * Simplified from graph/storage.ts with enhanced call resolution\n */\n\nimport Database from \"better-sqlite3\";\nimport type { GraphNode, GraphEdge } from \"../types.js\";\nimport { createPhase3Tables } from \"./storage-schema-phase3.js\";\n\nexport interface CallPath {\n  nodes: Array<{\n    id: string;\n    name: string;\n    file: string;\n    line: number;\n  }>;\n  edges: Array<{\n    from: string;\n    to: string;\n    type: string;\n  }>;\n}\n\nexport class FlowStorage {\n  public db: Database.Database; // Public for builder to access\n\n  constructor(dbPath: string) {\n    this.db = new Database(dbPath);\n    this.initSchema();\n  }\n\n  private initSchema(): void {\n    this.db.exec(`\n      -- Nodes table (enhanced with hash)\n      CREATE TABLE IF NOT EXISTS nodes (\n        id TEXT PRIMARY KEY,\n        type TEXT NOT NULL,\n        name TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        start_line INTEGER NOT NULL,\n        end_line INTEGER NOT NULL,\n        language TEXT NOT NULL,\n        hash TEXT,\n        metadata TEXT\n      );\n\n      -- Edges table (calls and related edges)\n      CREATE TABLE IF NOT EXISTS edges (\n        id TEXT PRIMARY KEY,\n        type TEXT NOT NULL,\n        source_id TEXT NOT NULL,\n        target_id TEXT NOT NULL,\n        metadata TEXT\n      );\n\n      -- Files table\n      CREATE TABLE IF NOT EXISTS files (\n        path TEXT PRIMARY KEY,\n        language TEXT NOT NULL,\n        hash TEXT NOT NULL,\n        analyzed_at TEXT NOT NULL\n      );\n\n      -- Exports: symbols exported by each file\n      CREATE TABLE IF NOT EXISTS exports (\n        file_path TEXT NOT NULL,\n        symbol_name TEXT NOT NULL,\n        node_id TEXT NOT NULL,\n        PRIMARY KEY (file_path, symbol_name)\n      );\n\n      -- Imports: what each file imports and from where\n      CREATE TABLE IF NOT EXISTS imports (\n        file_path TEXT NOT NULL,\n        imported_symbol TEXT NOT NULL,\n        from_module TEXT NOT NULL,\n        resolved_node_id TEXT,\n        line INTEGER NOT NULL\n      );\n\n      -- Containers (Docker services)\n      CREATE TABLE IF NOT EXISTS containers (\n        id TEXT PRIMARY KEY,\n        name TEXT NOT NULL,\n        image TEXT,\n        ports TEXT,\n        environment TEXT,\n        depends_on TEXT,\n        networks TEXT,\n        metadata TEXT\n      );\n\n      -- HTTP Endpoints (API routes)\n      CREATE TABLE IF NOT EXISTS http_endpoints (\n        id TEXT PRIMARY KEY,\n        method TEXT NOT NULL,\n        path TEXT NOT NULL,\n        handler_node_id TEXT,\n        container_id TEXT,\n        middleware TEXT,\n        metadata TEXT\n      );\n\n      -- HTTP Calls (client requests)\n      CREATE TABLE IF NOT EXISTS http_calls (\n        id TEXT PRIMARY KEY,\n        source_node_id TEXT NOT NULL,\n        target_endpoint_id TEXT,\n        url TEXT NOT NULL,\n        method TEXT NOT NULL,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Framework Dependencies (FastAPI Depends, etc.)\n      CREATE TABLE IF NOT EXISTS framework_dependencies (\n        id TEXT PRIMARY KEY,\n        source_node_id TEXT NOT NULL,\n        target_node_id TEXT,\n        framework TEXT NOT NULL,\n        pattern TEXT NOT NULL,\n        parameter_name TEXT,\n        line INTEGER,\n        unresolved_name TEXT,\n        metadata TEXT\n      );\n\n      -- Database Operations\n      CREATE TABLE IF NOT EXISTS database_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        database_type TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        collection TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Message Queue Operations\n      CREATE TABLE IF NOT EXISTS message_queue_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        exchange TEXT,\n        routing_key TEXT,\n        queue TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Variable Type Tracking\n      CREATE TABLE IF NOT EXISTS variable_types (\n        id TEXT PRIMARY KEY,\n        variable_name TEXT NOT NULL,\n        type_name TEXT NOT NULL,\n        scope_node_id TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        line INTEGER NOT NULL,\n        is_parameter BOOLEAN DEFAULT 0,\n        metadata TEXT\n      );\n\n      -- Indexes for fast queries\n      CREATE INDEX IF NOT EXISTS idx_nodes_file ON nodes(file_path);\n      CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name);\n      CREATE INDEX IF NOT EXISTS idx_nodes_hash ON nodes(hash);\n      CREATE INDEX IF NOT EXISTS idx_edges_source ON edges(source_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_target ON edges(target_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_resolved ON edges(target_id) WHERE target_id NOT LIKE 'ref:%';\n      CREATE INDEX IF NOT EXISTS idx_exports_file ON exports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_imports_file ON imports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_http_endpoints_path ON http_endpoints(method, path);\n      CREATE INDEX IF NOT EXISTS idx_http_calls_url ON http_calls(url);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_source ON framework_dependencies(source_node_id);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_target ON framework_dependencies(target_node_id);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_scope ON variable_types(scope_node_id, variable_name);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_file ON variable_types(file_path, variable_name);\n    `);\n\n    // Create Phase 3 tables\n    createPhase3Tables(this.db);\n  }\n\n  // ============ Node Operations ============\n\n  insertNode(node: GraphNode & { hash?: string }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO nodes (id, type, name, file_path, start_line, end_line, language, hash, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      node.id,\n      node.type,\n      node.name,\n      node.filePath,\n      node.startLine,\n      node.endLine,\n      node.language,\n      node.hash || null,\n      node.metadata ? JSON.stringify(node.metadata) : null\n    );\n  }\n\n  getNode(id: string): GraphNode | null {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE id = ?\");\n    const row = stmt.get(id) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return this.rowToNode(row);\n  }\n\n  searchNodesByName(name: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE name = ? OR name LIKE ?\");\n    const rows = stmt.all(name, `%${name}%`) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  getNodesByFile(filePath: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE file_path = ?\");\n    const rows = stmt.all(filePath) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  private rowToNode(row: Record<string, unknown>): GraphNode {\n    return {\n      id: row.id as string,\n      type: row.type as GraphNode[\"type\"],\n      name: row.name as string,\n      filePath: row.file_path as string,\n      startLine: row.start_line as number,\n      endLine: row.end_line as number,\n      language: row.language as string,\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : undefined,\n    };\n  }\n\n  // ============ Edge Operations ============\n\n  insertEdge(edge: GraphEdge): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO edges (id, type, source_id, target_id, metadata)\n      VALUES (?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      edge.id,\n      edge.type,\n      edge.sourceId,\n      edge.targetId,\n      edge.metadata ? JSON.stringify(edge.metadata) : null\n    );\n  }\n\n  // ============ Call Graph Queries ============\n\n  /**\n   * Get all resolved callees (functions this node calls)\n   */\n  getResolvedCallees(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.target_id\n      WHERE e.source_id = ? AND e.type = 'calls' AND e.target_id NOT LIKE 'ref:%'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get all resolved callers (functions that call this node)\n   */\n  getResolvedCallers(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.source_id\n      WHERE e.target_id = ? AND e.type = 'calls'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get impact: all nodes affected by changes to this node (BFS traversal)\n   */\n  getImpactedNodes(nodeId: string, maxDepth: number = 3): GraphNode[] {\n    const visited = new Set<string>();\n    const result: GraphNode[] = [];\n    const queue: Array<{ id: string; depth: number }> = [{ id: nodeId, depth: 0 }];\n\n    while (queue.length > 0) {\n      const { id, depth } = queue.shift()!;\n\n      if (visited.has(id) || depth > maxDepth) continue;\n      visited.add(id);\n\n      const callers = this.getResolvedCallers(id);\n      for (const caller of callers) {\n        if (!visited.has(caller.id)) {\n          result.push(caller);\n          queue.push({ id: caller.id, depth: depth + 1 });\n        }\n      }\n    }\n\n    return result;\n  }\n\n  /**\n   * Trace call path from source to target using BFS\n   */\n  traceCallPath(fromId: string, toId: string): CallPath | null {\n    const visited = new Set<string>();\n    const parent = new Map<string, { nodeId: string; edgeType: string }>();\n    const queue: string[] = [fromId];\n\n    while (queue.length > 0) {\n      const current = queue.shift()!;\n\n      if (current === toId) {\n        // Reconstruct path\n        const path: string[] = [];\n        let node = toId;\n        while (node !== fromId) {\n          path.unshift(node);\n          node = parent.get(node)!.nodeId;\n        }\n        path.unshift(fromId);\n\n        // Get node details\n        const nodes = path.map((id) => {\n          const n = this.getNode(id);\n          return {\n            id: n!.id,\n            name: n!.name,\n            file: n!.filePath,\n            line: n!.startLine,\n          };\n        });\n\n        const edges = [];\n        for (let i = 0; i < path.length - 1; i++) {\n          edges.push({\n            from: path[i],\n            to: path[i + 1],\n            type: 'calls',\n          });\n        }\n\n        return { nodes, edges };\n      }\n\n      if (visited.has(current)) continue;\n      visited.add(current);\n\n      const callees = this.getResolvedCallees(current);\n      for (const callee of callees) {\n        if (!visited.has(callee.id)) {\n          parent.set(callee.id, { nodeId: current, edgeType: 'calls' });\n          queue.push(callee.id);\n        }\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Export/Import Tracking ============\n\n  registerExport(filePath: string, symbolName: string, nodeId: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO exports (file_path, symbol_name, node_id)\n      VALUES (?, ?, ?)\n    `);\n    stmt.run(filePath, symbolName, nodeId);\n  }\n\n  registerImport(filePath: string, symbol: string, fromModule: string, line: number): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO imports (file_path, imported_symbol, from_module, line)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, symbol, fromModule, line);\n  }\n\n  resolveImport(filePath: string, symbol: string): string | null {\n    // Get the import statement\n    const importStmt = this.db.prepare(`\n      SELECT from_module FROM imports WHERE file_path = ? AND imported_symbol = ?\n    `).get(filePath, symbol) as { from_module: string } | undefined;\n\n    if (!importStmt) return null;\n\n    // Convert module path to possible file paths\n    // Examples:\n    // - \"backend.authentication\" -> [\"backend/authentication.py\", \"backend/authentication/__init__.py\"]\n    // - \"..authentication\" -> relative import (handle separately)\n    const modulePath = importStmt.from_module;\n    const possiblePaths = this.resolvePythonModulePath(filePath, modulePath);\n\n    // Try each possible path\n    for (const targetPath of possiblePaths) {\n      const exportStmt = this.db.prepare(`\n        SELECT node_id FROM exports WHERE file_path = ? AND symbol_name = ?\n      `).get(targetPath, symbol) as { node_id: string } | undefined;\n\n      if (exportStmt) {\n        return exportStmt.node_id;\n      }\n    }\n\n    return null;\n  }\n\n  /**\n   * Resolve a Python module path to possible file paths\n   * Handles: absolute imports, relative imports, __init__.py\n   */\n  private resolvePythonModulePath(currentFile: string, modulePath: string): string[] {\n    const possiblePaths: string[] = [];\n\n    // Handle relative imports (from . import x, from .. import y)\n    if (modulePath.startsWith(\".\")) {\n      const currentDir = currentFile.substring(0, currentFile.lastIndexOf(\"/\"));\n      const depth = modulePath.match(/^\\.+/)?.[0].length || 0;\n      const moduleName = modulePath.replace(/^\\.+/, \"\");\n\n      // Go up directories based on depth\n      let targetDir = currentDir;\n      for (let i = 1; i < depth; i++) {\n        const lastSlash = targetDir.lastIndexOf(\"/\");\n        if (lastSlash > 0) {\n          targetDir = targetDir.substring(0, lastSlash);\n        }\n      }\n\n      if (moduleName) {\n        const relativePath = moduleName.replace(/\\./g, \"/\");\n        possiblePaths.push(`${targetDir}/${relativePath}.py`);\n        possiblePaths.push(`${targetDir}/${relativePath}/__init__.py`);\n      } else {\n        possiblePaths.push(`${targetDir}/__init__.py`);\n      }\n    } else {\n      // Absolute import - convert dots to slashes\n      const pathComponents = modulePath.split(\".\");\n\n      // Try different interpretations\n      // 1. Full path as file: backend.authentication -> backend/authentication.py\n      const filePath = pathComponents.join(\"/\");\n      possiblePaths.push(`${filePath}.py`);\n      possiblePaths.push(`${filePath}/__init__.py`);\n\n      // 2. Try with src/ prefix (common pattern)\n      possiblePaths.push(`src/${filePath}.py`);\n      possiblePaths.push(`src/${filePath}/__init__.py`);\n\n      // 3. Query actual files to find match\n      // Get all files that end with the last component\n      const lastComponent = pathComponents[pathComponents.length - 1];\n      const matchingFiles = this.db.prepare(`\n        SELECT DISTINCT file_path FROM exports\n        WHERE file_path LIKE ?\n      `).all(`%/${lastComponent}.py`) as Array<{ file_path: string }>;\n\n      for (const file of matchingFiles) {\n        // Check if the file path ends with the module path\n        const normalizedFilePath = file.file_path.replace(/\\\\/g, \"/\");\n        if (normalizedFilePath.includes(filePath)) {\n          possiblePaths.push(normalizedFilePath);\n        }\n      }\n    }\n\n    return possiblePaths;\n  }\n\n  /**\n   * Resolve a class method call like ClassName.method_name\n   * Handles: static methods, class methods, imported classes\n   */\n  resolveClassMethod(className: string, methodName: string, callerFilePath: string): string | null {\n    // Strategy 1: Check if the class is imported in the caller file\n    const classNodeId = this.resolveImport(callerFilePath, className);\n\n    if (classNodeId) {\n      // Find the method within this class\n      const methods = this.db.prepare(`\n        SELECT target_id FROM edges\n        WHERE source_id = ? AND type = 'contains'\n      `).all(classNodeId) as Array<{ target_id: string }>;\n\n      for (const edge of methods) {\n        const methodNode = this.getNode(edge.target_id);\n        if (methodNode && methodNode.name === methodName) {\n          return methodNode.id;\n        }\n      }\n    }\n\n    // Strategy 2: Search for class in the same file\n    const classNode = this.db.prepare(`\n      SELECT id FROM nodes\n      WHERE file_path = ? AND name = ? AND type = 'class'\n    `).get(callerFilePath, className) as { id: string } | undefined;\n\n    if (classNode) {\n      // Find the method within this class\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(classNode.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    // Strategy 3: Search globally for the class\n    const allClasses = this.db.prepare(`\n      SELECT id FROM nodes WHERE name = ? AND type = 'class'\n    `).all(className) as Array<{ id: string }>;\n\n    for (const cls of allClasses) {\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(cls.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Variable Type Tracking ============\n\n  /**\n   * Register a variable type (from assignment or parameter)\n   */\n  registerVariableType(\n    variableName: string,\n    typeName: string,\n    scopeNodeId: string,\n    filePath: string,\n    line: number,\n    isParameter: boolean = false\n  ): void {\n    const id = `${scopeNodeId}:var:${variableName}`;\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO variable_types\n        (id, variable_name, type_name, scope_node_id, file_path, line, is_parameter)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(id, variableName, typeName, scopeNodeId, filePath, line, isParameter ? 1 : 0);\n  }\n\n  /**\n   * Resolve variable.method to actual method node\n   * Example: user.get_name() where user is of type User\n   */\n  resolveVariableMethod(variableName: string, methodName: string, scopeNodeId: string): string | null {\n    // Special case: self.method calls - resolve to methods in parent class\n    if (variableName === \"self\") {\n      return this.resolveSelfMethod(methodName, scopeNodeId);\n    }\n\n    // Get the variable's type\n    const varType = this.db.prepare(`\n      SELECT type_name FROM variable_types\n      WHERE scope_node_id = ? AND variable_name = ?\n    `).get(scopeNodeId, variableName) as { type_name: string } | undefined;\n\n    if (!varType) {\n      return null;\n    }\n\n    // Now resolve ClassName.method_name\n    return this.resolveClassMethod(varType.type_name, methodName, \"\");\n  }\n\n  /**\n   * Resolve self.method() calls to methods in the same class\n   */\n  private resolveSelfMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of this method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Find the method with this name in the same class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(parentClass.source_id, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  /**\n   * Resolve super().method() calls to parent class methods\n   */\n  resolveSuperMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of the current method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Get the class node\n    const classNode = this.getNode(parentClass.source_id);\n    if (!classNode || classNode.type !== 'class') {\n      return null;\n    }\n\n    // Find the parent class (via extends edge)\n    const baseClass = this.db.prepare(`\n      SELECT target_id FROM edges\n      WHERE source_id = ? AND type = 'extends'\n    `).get(classNode.id) as { target_id: string } | undefined;\n\n    if (!baseClass) {\n      return null;\n    }\n\n    // The target might be a ref, resolve it first\n    let baseClassId = baseClass.target_id;\n    if (baseClassId.startsWith('ref:')) {\n      const baseClassName = baseClassId.replace('ref:', '');\n      // Search for the class by name\n      const resolvedClass = this.db.prepare(`\n        SELECT id FROM nodes WHERE name = ? AND type = 'class'\n      `).get(baseClassName) as { id: string } | undefined;\n\n      if (!resolvedClass) {\n        return null;\n      }\n      baseClassId = resolvedClass.id;\n    }\n\n    // Find the method in the parent class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(baseClassId, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  // ============ File Operations ============\n\n  upsertFile(filePath: string, language: string, hash: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO files (path, language, hash, analyzed_at)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, language, hash, new Date().toISOString());\n  }\n\n  getFileHash(filePath: string): string | null {\n    const stmt = this.db.prepare(\"SELECT hash FROM files WHERE path = ?\");\n    const row = stmt.get(filePath) as { hash: string } | undefined;\n    return row?.hash || null;\n  }\n\n  deleteFileData(filePath: string): void {\n    this.db.prepare(\"DELETE FROM nodes WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM exports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM imports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM files WHERE path = ?\").run(filePath);\n  }\n\n  // ============ Stats ============\n\n  getStats(): {\n    totalFiles: number;\n    totalNodes: number;\n    totalEdges: number;\n    resolvedCalls: number;\n    unresolvedCalls: number;\n    httpEndpoints: number;\n    frameworkDependencies: number;\n    resolvedDependencies: number;\n    containers: number;\n  } {\n    const totalFiles = (this.db.prepare(\"SELECT COUNT(*) as count FROM files\").get() as { count: number }).count;\n    const totalNodes = (this.db.prepare(\"SELECT COUNT(*) as count FROM nodes\").get() as { count: number }).count;\n    const totalEdges = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls'\").get() as { count: number }).count;\n    const resolvedCalls = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls' AND target_id NOT LIKE 'ref:%'\").get() as { count: number }).count;\n    const unresolvedCalls = totalEdges - resolvedCalls;\n    const httpEndpoints = (this.db.prepare(\"SELECT COUNT(*) as count FROM http_endpoints\").get() as { count: number }).count;\n    const frameworkDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies\").get() as { count: number }).count;\n    const resolvedDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies WHERE target_node_id IS NOT NULL\").get() as { count: number }).count;\n    const containers = (this.db.prepare(\"SELECT COUNT(*) as count FROM containers\").get() as { count: number }).count;\n\n    return {\n      totalFiles,\n      totalNodes,\n      totalEdges,\n      resolvedCalls,\n      unresolvedCalls,\n      httpEndpoints,\n      frameworkDependencies,\n      resolvedDependencies,\n      containers,\n    };\n  }\n\n  // ============ Container Operations ============\n\n  insertContainer(container: {\n    id: string;\n    name: string;\n    image?: string;\n    ports?: Array<{ host: number; container: number }>;\n    environment?: Record<string, string>;\n    depends_on?: string[];\n    networks?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO containers (id, name, image, ports, environment, depends_on, networks, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      container.id,\n      container.name,\n      container.image || null,\n      container.ports ? JSON.stringify(container.ports) : null,\n      container.environment ? JSON.stringify(container.environment) : null,\n      container.depends_on ? JSON.stringify(container.depends_on) : null,\n      container.networks ? JSON.stringify(container.networks) : null,\n      container.metadata ? JSON.stringify(container.metadata) : null\n    );\n  }\n\n  getContainer(id: string): any | null {\n    const stmt = this.db.prepare(\"SELECT * FROM containers WHERE id = ?\");\n    const row = stmt.get(id) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return {\n      id: row.id,\n      name: row.name,\n      image: row.image,\n      ports: row.ports ? JSON.parse(row.ports as string) : [],\n      environment: row.environment ? JSON.parse(row.environment as string) : {},\n      depends_on: row.depends_on ? JSON.parse(row.depends_on as string) : [],\n      networks: row.networks ? JSON.parse(row.networks as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  getAllContainers(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM containers\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      name: row.name,\n      image: row.image,\n      ports: row.ports ? JSON.parse(row.ports as string) : [],\n      environment: row.environment ? JSON.parse(row.environment as string) : {},\n      depends_on: row.depends_on ? JSON.parse(row.depends_on as string) : [],\n      networks: row.networks ? JSON.parse(row.networks as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  // ============ HTTP Endpoint Operations ============\n\n  insertHttpEndpoint(endpoint: {\n    id: string;\n    method: string;\n    path: string;\n    handler_node_id?: string;\n    container_id?: string;\n    middleware?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO http_endpoints (id, method, path, handler_node_id, container_id, middleware, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      endpoint.id,\n      endpoint.method,\n      endpoint.path,\n      endpoint.handler_node_id || null,\n      endpoint.container_id || null,\n      endpoint.middleware ? JSON.stringify(endpoint.middleware) : null,\n      endpoint.metadata ? JSON.stringify(endpoint.metadata) : null\n    );\n  }\n\n  insertDatabaseOperation(dbOp: {\n    id: string;\n    node_id: string;\n    database_type: string;\n    operation: string;\n    collection?: string;\n    line?: number;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO database_operations (id, node_id, database_type, operation, collection, line, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dbOp.id,\n      dbOp.node_id,\n      dbOp.database_type,\n      dbOp.operation,\n      dbOp.collection || null,\n      dbOp.line || null,\n      dbOp.metadata ? JSON.stringify(dbOp.metadata) : null\n    );\n  }\n\n  findHttpEndpoint(method: string, path: string): any | null {\n    const stmt = this.db.prepare(\"SELECT * FROM http_endpoints WHERE method = ? AND path = ?\");\n    const row = stmt.get(method, path) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return {\n      id: row.id,\n      method: row.method,\n      path: row.path,\n      handler_node_id: row.handler_node_id,\n      container_id: row.container_id,\n      middleware: row.middleware ? JSON.parse(row.middleware as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  // ============ Framework Dependency Operations ============\n\n  insertFrameworkDependency(dep: {\n    id: string;\n    source_node_id: string;\n    target_node_id?: string;\n    framework: string;\n    pattern: string;\n    parameter_name?: string;\n    line?: number;\n    unresolved_name?: string;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO framework_dependencies\n      (id, source_node_id, target_node_id, framework, pattern, parameter_name, line, unresolved_name, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dep.id,\n      dep.source_node_id,\n      dep.target_node_id || null,\n      dep.framework,\n      dep.pattern,\n      dep.parameter_name || null,\n      dep.line || null,\n      dep.unresolved_name || null,\n      dep.metadata ? JSON.stringify(dep.metadata) : null\n    );\n  }\n\n  getFrameworkDependencies(sourceNodeId: string): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM framework_dependencies WHERE source_node_id = ?\");\n    const rows = stmt.all(sourceNodeId) as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      source_node_id: row.source_node_id,\n      target_node_id: row.target_node_id,\n      framework: row.framework,\n      pattern: row.pattern,\n      parameter_name: row.parameter_name,\n      line: row.line,\n      unresolved_name: row.unresolved_name,\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  getAllUnresolvedDependencies(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM framework_dependencies WHERE target_node_id IS NULL\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      source_node_id: row.source_node_id,\n      framework: row.framework,\n      pattern: row.pattern,\n      unresolved_name: row.unresolved_name,\n      line: row.line,\n    }));\n  }\n\n  updateFrameworkDependencyTarget(id: string, targetNodeId: string): void {\n    const stmt = this.db.prepare(\"UPDATE framework_dependencies SET target_node_id = ? WHERE id = ?\");\n    stmt.run(targetNodeId, id);\n  }\n\n  clear(): void {\n    this.db.exec(`\n      DELETE FROM nodes;\n      DELETE FROM edges;\n      DELETE FROM files;\n      DELETE FROM exports;\n      DELETE FROM imports;\n      DELETE FROM containers;\n      DELETE FROM http_endpoints;\n      DELETE FROM http_calls;\n      DELETE FROM framework_dependencies;\n      DELETE FROM database_operations;\n      DELETE FROM message_queue_operations;\n    `);\n  }\n\n  /**\n   * Get all file hashes (for detecting changes)\n   */\n  getAllFileHashes(): Record<string, string> {\n    const stmt = this.db.prepare(\"SELECT path, hash FROM files WHERE hash IS NOT NULL\");\n    const rows = stmt.all() as Array<{ path: string; hash: string }>;\n    const hashes: Record<string, string> = {};\n    for (const row of rows) {\n      hashes[row.path] = row.hash;\n    }\n    return hashes;\n  }\n\n  /**\n   * Get all nodes (for impact comparison)\n   */\n  getAllNodes(): Array<{ id: string; name: string; type: string; filePath: string }> {\n    const stmt = this.db.prepare(\"SELECT id, name, type, file_path FROM nodes\");\n    return stmt.all() as Array<{ id: string; name: string; type: string; filePath: string }>;\n  }\n\n  /**\n   * Get all edges (for impact comparison)\n   */\n  getAllEdges(): Array<{ id: string; source_id: string; target_id: string; type: string }> {\n    const stmt = this.db.prepare(\"SELECT id, source_id, target_id, type FROM edges\");\n    return stmt.all() as Array<{ id: string; source_id: string; target_id: string; type: string }>;\n  }\n\n  /**\n   * Get resolved callers with file/line info (for impact analysis)\n   */\n  getResolvedCallersWithLocation(nodeId: string): Array<{ name: string; file: string; line: number }> {\n    const stmt = this.db.prepare(`\n      SELECT n.name, n.file_path as file, n.start_line as line\n      FROM edges e\n      JOIN nodes n ON e.source_id = n.id\n      WHERE e.target_id = ? 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NULL,\n      property_path TEXT NOT NULL,\n      full_path TEXT NOT NULL,\n      access_type TEXT NOT NULL,\n      file_path TEXT NOT NULL,\n      line INTEGER NOT NULL,\n      FOREIGN KEY (scope_node_id) REFERENCES nodes(id)\n    );\n  `);\n\n  // Return shapes table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS return_shapes (\n      id TEXT PRIMARY KEY,\n      function_id TEXT NOT NULL,\n      return_type TEXT,\n      object_shape TEXT,\n      line INTEGER NOT NULL,\n      return_expression TEXT,\n      FOREIGN KEY (function_id) REFERENCES nodes(id)\n    );\n  `);\n\n  // Data flows table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS data_flows (\n      id TEXT PRIMARY KEY,\n      source_id TEXT NOT NULL,\n      target_id TEXT NOT NULL,\n      data_type TEXT NOT NULL,\n      shape TEXT,\n      flow_type TEXT NOT NULL,\n      line INTEGER\n    );\n  `);\n\n  // Create indexes for performance\n  db.exec(`\n    CREATE INDEX IF NOT EXISTS idx_property_accesses_path\n      ON property_accesses(full_path);\n\n    CREATE INDEX IF NOT EXISTS idx_property_accesses_scope\n      ON property_accesses(scope_node_id);\n\n    CREATE INDEX IF NOT EXISTS idx_return_shapes_function\n      ON return_shapes(function_id);\n\n    CREATE INDEX IF NOT EXISTS idx_data_flows_source\n      ON data_flows(source_id);\n\n    CREATE INDEX IF NOT EXISTS idx_data_flows_target\n      ON data_flows(target_id);\n  `);\n}\n\n/**\n * Drop Phase 3 tables (for testing/cleanup)\n */\nexport function dropPhase3Tables(db: Database): void {\n  db.exec(`\n    DROP TABLE IF EXISTS data_flows;\n    DROP TABLE IF EXISTS return_shapes;\n    DROP TABLE IF EXISTS property_accesses;\n  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NULL,\n        name TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        start_line INTEGER NOT NULL,\n        end_line INTEGER NOT NULL,\n        language TEXT NOT NULL,\n        hash TEXT,\n        metadata TEXT\n      );\n\n      -- Edges table (calls and related edges)\n      CREATE TABLE IF NOT EXISTS edges (\n        id TEXT PRIMARY KEY,\n        type TEXT NOT NULL,\n        source_id TEXT NOT NULL,\n        target_id TEXT NOT NULL,\n        metadata TEXT\n      );\n\n      -- Files table\n      CREATE TABLE IF NOT EXISTS files (\n        path TEXT PRIMARY KEY,\n        language TEXT NOT NULL,\n        hash TEXT NOT NULL,\n        analyzed_at TEXT NOT NULL\n      );\n\n      -- Exports: symbols exported by each file\n      CREATE TABLE IF NOT EXISTS exports (\n        file_path TEXT NOT NULL,\n        symbol_name TEXT NOT NULL,\n        node_id TEXT NOT NULL,\n        PRIMARY KEY (file_path, symbol_name)\n      );\n\n      -- Imports: what each file imports and from where\n  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target_endpoint_id TEXT,\n        url TEXT NOT NULL,\n        method TEXT NOT NULL,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Framework Dependencies (FastAPI Depends, etc.)\n      CREATE TABLE IF NOT EXISTS framework_dependencies (\n        id TEXT PRIMARY KEY,\n        source_node_id TEXT NOT NULL,\n        target_node_id TEXT,\n        framework TEXT NOT NULL,\n        pattern TEXT NOT NULL,\n        parameter_name TEXT,\n        line INTEGER,\n        unresolved_name TEXT,\n        metadata TEXT\n      );\n\n      -- Database Operations\n      CREATE TABLE IF NOT EXISTS database_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        database_type TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        collection TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Message Queue Operations\n      CREATE TABLE IF NOT EXISTS message_queue_operations (\n        id TEXT PRIMARY KEY,\n        node_id TEXT NOT NULL,\n        operation TEXT NOT NULL,\n        exchange TEXT,\n        routing_key TEXT,\n        queue TEXT,\n        line INTEGER,\n        metadata TEXT\n      );\n\n      -- Variable Type Tracking\n      CREATE TABLE IF NOT EXISTS variable_types (\n        id TEXT PRIMARY KEY,\n        variable_name TEXT NOT NULL,\n        type_name TEXT NOT NULL,\n        scope_node_id TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        line INTEGER NOT NULL,\n        is_parameter BOOLEAN DEFAULT 0,\n        metadata TEXT\n      );\n\n      -- Indexes for fast queries\n      CREATE INDEX IF NOT EXISTS idx_nodes_file ON nodes(file_path);\n      CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name);\n      CREATE INDEX IF NOT EXISTS idx_nodes_hash ON nodes(hash);\n      CREATE INDEX IF NOT EXISTS idx_edges_source ON edges(source_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_target ON edges(target_id);\n      CREATE INDEX IF NOT EXISTS idx_edges_resolved ON edges(target_id) WHERE target_id NOT LIKE 'ref:%';\n      CREATE INDEX IF NOT EXISTS idx_exports_file ON exports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_imports_file ON imports(file_path);\n      CREATE INDEX IF NOT EXISTS idx_http_endpoints_path ON http_endpoints(method, path);\n      CREATE INDEX IF NOT EXISTS idx_http_calls_url ON http_calls(url);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_source ON framework_dependencies(source_node_id);\n      CREATE INDEX IF NOT EXISTS idx_framework_deps_target ON framework_dependencies(target_node_id);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_scope ON variable_types(scope_node_id, variable_name);\n      CREATE INDEX IF NOT EXISTS idx_variable_types_file ON variable_types(file_path, variable_name);\n    `);\n\n    // Create Phase 3 tables\n    createPhase3Tables(this.db);\n  }\n\n  // ============ Node Operations ============\n\n  insertNode(node: GraphNode & { hash?: string }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO nodes (id, type, name, file_path, start_line, end_line, language, hash, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      node.id,\n      node.type,\n      node.name,\n      node.filePath,\n      node.startLine,\n      node.endLine,\n      node.language,\n      node.hash || null,\n      node.metadata ? JSON.stringify(node.metadata) : null\n    );\n  }\n\n  getNode(id: string): GraphNode | null {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE id = ?\");\n    const row = stmt.get(id) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return this.rowToNode(row);\n  }\n\n  searchNodesByName(name: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE name = ? OR name LIKE ?\");\n    const rows = stmt.all(name, `%${name}%`) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  getNodesByFile(filePath: string): GraphNode[] {\n    const stmt = this.db.prepare(\"SELECT * FROM nodes WHERE file_path = ?\");\n    const rows = stmt.all(filePath) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  private rowToNode(row: Record<string, unknown>): GraphNode {\n    return {\n      id: row.id as string,\n      type: row.type as GraphNode[\"type\"],\n      name: row.name as string,\n      filePath: row.file_path as string,\n      startLine: row.start_line as number,\n      endLine: row.end_line as number,\n      language: row.language as string,\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : undefined,\n    };\n  }\n\n  // ============ Edge Operations ============\n\n  insertEdge(edge: GraphEdge): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO edges (id, type, source_id, target_id, metadata)\n      VALUES (?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      edge.id,\n      edge.type,\n      edge.sourceId,\n      edge.targetId,\n      edge.metadata ? JSON.stringify(edge.metadata) : null\n    );\n  }\n\n  // ============ Call Graph Queries ============\n\n  /**\n   * Get all resolved callees (functions this node calls)\n   */\n  getResolvedCallees(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.target_id\n      WHERE e.source_id = ? AND e.type = 'calls' AND e.target_id NOT LIKE 'ref:%'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get all resolved callers (functions that call this node)\n   */\n  getResolvedCallers(nodeId: string): GraphNode[] {\n    const stmt = this.db.prepare(`\n      SELECT n.* FROM nodes n\n      JOIN edges e ON n.id = e.source_id\n      WHERE e.target_id = ? AND e.type = 'calls'\n    `);\n    const rows = stmt.all(nodeId) as Record<string, unknown>[];\n    return rows.map((r) => this.rowToNode(r));\n  }\n\n  /**\n   * Get impact: all nodes affected by changes to this node (BFS traversal)\n   */\n  getImpactedNodes(nodeId: string, maxDepth: number = 3): GraphNode[] {\n    const visited = new Set<string>();\n    const result: GraphNode[] = [];\n    const queue: Array<{ id: string; depth: number }> = [{ id: nodeId, depth: 0 }];\n\n    while (queue.length > 0) {\n      const { id, depth } = queue.shift()!;\n\n      if (visited.has(id) || depth > maxDepth) continue;\n      visited.add(id);\n\n      const callers = this.getResolvedCallers(id);\n      for (const caller of callers) {\n        if (!visited.has(caller.id)) {\n          result.push(caller);\n          queue.push({ id: caller.id, depth: depth + 1 });\n        }\n      }\n    }\n\n    return result;\n  }\n\n  /**\n   * Trace call path from source to target using BFS\n   */\n  traceCallPath(fromId: string, toId: string): CallPath | null {\n    const visited = new Set<string>();\n    const parent = new Map<string, { nodeId: string; edgeType: string }>();\n    const queue: string[] = [fromId];\n\n    while (queue.length > 0) {\n      const current = queue.shift()!;\n\n      if (current === toId) {\n        // Reconstruct path\n        const path: string[] = [];\n        let node = toId;\n        while (node !== fromId) {\n          path.unshift(node);\n          node = parent.get(node)!.nodeId;\n        }\n        path.unshift(fromId);\n\n        // Get node details\n        const nodes = path.map((id) => {\n          const n = this.getNode(id);\n          return {\n            id: n!.id,\n            name: n!.name,\n            file: n!.filePath,\n            line: n!.startLine,\n          };\n        });\n\n        const edges = [];\n        for (let i = 0; i < path.length - 1; i++) {\n          edges.push({\n            from: path[i],\n            to: path[i + 1],\n            type: 'calls',\n          });\n        }\n\n        return { nodes, edges };\n      }\n\n      if (visited.has(current)) continue;\n      visited.add(current);\n\n      const callees = this.getResolvedCallees(current);\n      for (const callee of callees) {\n        if (!visited.has(callee.id)) {\n          parent.set(callee.id, { nodeId: current, edgeType: 'calls' });\n          queue.push(callee.id);\n        }\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Export/Import Tracking ============\n\n  registerExport(filePath: string, symbolName: string, nodeId: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO exports (file_path, symbol_name, node_id)\n      VALUES (?, ?, ?)\n    `);\n    stmt.run(filePath, symbolName, nodeId);\n  }\n\n  registerImport(filePath: string, symbol: string, fromModule: string, line: number): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO imports (file_path, imported_symbol, from_module, line)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, symbol, fromModule, line);\n  }\n\n  resolveImport(filePath: string, symbol: string): string | null {\n    // Get the import statement\n    const importStmt = this.db.prepare(`\n      SELECT from_module FROM imports WHERE file_path = ? AND imported_symbol = ?\n    `).get(filePath, symbol) as { from_module: string } | undefined;\n\n    if (!importStmt) return null;\n\n    // Convert module path to possible file paths\n    // Examples:\n    // - \"backend.authentication\" -> [\"backend/authentication.py\", \"backend/authentication/__init__.py\"]\n    // - \"..authentication\" -> relative import (handle separately)\n    const modulePath = importStmt.from_module;\n    const possiblePaths = this.resolvePythonModulePath(filePath, modulePath);\n\n    // Try each possible path\n    for (const targetPath of possiblePaths) {\n      const exportStmt = this.db.prepare(`\n        SELECT node_id FROM exports WHERE file_path = ? AND symbol_name = ?\n      `).get(targetPath, symbol) as { node_id: string } | undefined;\n\n      if (exportStmt) {\n        return exportStmt.node_id;\n      }\n    }\n\n    return null;\n  }\n\n  /**\n   * Resolve a Python module path to possible file paths\n   * Handles: absolute imports, relative imports, __init__.py\n   */\n  private resolvePythonModulePath(currentFile: string, modulePath: string): string[] {\n    const possiblePaths: string[] = [];\n\n    // Handle relative imports (from . import x, from .. import y)\n    if (modulePath.startsWith(\".\")) {\n      const currentDir = currentFile.substring(0, currentFile.lastIndexOf(\"/\"));\n      const depth = modulePath.match(/^\\.+/)?.[0].length || 0;\n      const moduleName = modulePath.replace(/^\\.+/, \"\");\n\n      // Go up directories based on depth\n      let targetDir = currentDir;\n      for (let i = 1; i < depth; i++) {\n        const lastSlash = targetDir.lastIndexOf(\"/\");\n        if (lastSlash > 0) {\n          targetDir = targetDir.substring(0, lastSlash);\n        }\n      }\n\n      if (moduleName) {\n        const relativePath = moduleName.replace(/\\./g, \"/\");\n        possiblePaths.push(`${targetDir}/${relativePath}.py`);\n        possiblePaths.push(`${targetDir}/${relativePath}/__init__.py`);\n      } else {\n        possiblePaths.push(`${targetDir}/__init__.py`);\n      }\n    } else {\n      // Absolute import - convert dots to slashes\n      const pathComponents = modulePath.split(\".\");\n\n      // Try different interpretations\n      // 1. Full path as file: backend.authentication -> backend/authentication.py\n      const filePath = pathComponents.join(\"/\");\n      possiblePaths.push(`${filePath}.py`);\n      possiblePaths.push(`${filePath}/__init__.py`);\n\n      // 2. Try with src/ prefix (common pattern)\n      possiblePaths.push(`src/${filePath}.py`);\n      possiblePaths.push(`src/${filePath}/__init__.py`);\n\n      // 3. Query actual files to find match\n      // Get all files that end with the last component\n      const lastComponent = pathComponents[pathComponents.length - 1];\n      const matchingFiles = this.db.prepare(`\n        SELECT DISTINCT file_path FROM exports\n        WHERE file_path LIKE ?\n      `).all(`%/${lastComponent}.py`) as Array<{ file_path: string }>;\n\n      for (const file of matchingFiles) {\n        // Check if the file path ends with the module path\n        const normalizedFilePath = file.file_path.replace(/\\\\/g, \"/\");\n        if (normalizedFilePath.includes(filePath)) {\n          possiblePaths.push(normalizedFilePath);\n        }\n      }\n    }\n\n    return possiblePaths;\n  }\n\n  /**\n   * Resolve a class method call like ClassName.method_name\n   * Handles: static methods, class methods, imported classes\n   */\n  resolveClassMethod(className: string, methodName: string, callerFilePath: string): string | null {\n    // Strategy 1: Check if the class is imported in the caller file\n    const classNodeId = this.resolveImport(callerFilePath, className);\n\n    if (classNodeId) {\n      // Find the method within this class\n      const methods = this.db.prepare(`\n        SELECT target_id FROM edges\n        WHERE source_id = ? AND type = 'contains'\n      `).all(classNodeId) as Array<{ target_id: string }>;\n\n      for (const edge of methods) {\n        const methodNode = this.getNode(edge.target_id);\n        if (methodNode && methodNode.name === methodName) {\n          return methodNode.id;\n        }\n      }\n    }\n\n    // Strategy 2: Search for class in the same file\n    const classNode = this.db.prepare(`\n      SELECT id FROM nodes\n      WHERE file_path = ? AND name = ? AND type = 'class'\n    `).get(callerFilePath, className) as { id: string } | undefined;\n\n    if (classNode) {\n      // Find the method within this class\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(classNode.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    // Strategy 3: Search globally for the class\n    const allClasses = this.db.prepare(`\n      SELECT id FROM nodes WHERE name = ? AND type = 'class'\n    `).all(className) as Array<{ id: string }>;\n\n    for (const cls of allClasses) {\n      const methodNode = this.db.prepare(`\n        SELECT n.id FROM nodes n\n        JOIN edges e ON e.target_id = n.id\n        WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n      `).get(cls.id, methodName) as { id: string } | undefined;\n\n      if (methodNode) {\n        return methodNode.id;\n      }\n    }\n\n    return null;\n  }\n\n  // ============ Variable Type Tracking ============\n\n  /**\n   * Register a variable type (from assignment or parameter)\n   */\n  registerVariableType(\n    variableName: string,\n    typeName: string,\n    scopeNodeId: string,\n    filePath: string,\n    line: number,\n    isParameter: boolean = false\n  ): void {\n    const id = `${scopeNodeId}:var:${variableName}`;\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO variable_types\n        (id, variable_name, type_name, scope_node_id, file_path, line, is_parameter)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(id, variableName, typeName, scopeNodeId, filePath, line, isParameter ? 1 : 0);\n  }\n\n  /**\n   * Resolve variable.method to actual method node\n   * Example: user.get_name() where user is of type User\n   */\n  resolveVariableMethod(variableName: string, methodName: string, scopeNodeId: string): string | null {\n    // Special case: self.method calls - resolve to methods in parent class\n    if (variableName === \"self\") {\n      return this.resolveSelfMethod(methodName, scopeNodeId);\n    }\n\n    // Get the variable's type\n    const varType = this.db.prepare(`\n      SELECT type_name FROM variable_types\n      WHERE scope_node_id = ? AND variable_name = ?\n    `).get(scopeNodeId, variableName) as { type_name: string } | undefined;\n\n    if (!varType) {\n      return null;\n    }\n\n    // Now resolve ClassName.method_name\n    return this.resolveClassMethod(varType.type_name, methodName, \"\");\n  }\n\n  /**\n   * Resolve self.method() calls to methods in the same class\n   */\n  private resolveSelfMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of this method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Find the method with this name in the same class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(parentClass.source_id, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  /**\n   * Resolve super().method() calls to parent class methods\n   */\n  resolveSuperMethod(methodName: string, scopeNodeId: string): string | null {\n    // Find the parent class of the current method\n    const parentClass = this.db.prepare(`\n      SELECT source_id FROM edges\n      WHERE target_id = ? AND type = 'contains'\n    `).get(scopeNodeId) as { source_id: string } | undefined;\n\n    if (!parentClass) {\n      return null;\n    }\n\n    // Get the class node\n    const classNode = this.getNode(parentClass.source_id);\n    if (!classNode || classNode.type !== 'class') {\n      return null;\n    }\n\n    // Find the parent class (via extends edge)\n    const baseClass = this.db.prepare(`\n      SELECT target_id FROM edges\n      WHERE source_id = ? AND type = 'extends'\n    `).get(classNode.id) as { target_id: string } | undefined;\n\n    if (!baseClass) {\n      return null;\n    }\n\n    // The target might be a ref, resolve it first\n    let baseClassId = baseClass.target_id;\n    if (baseClassId.startsWith('ref:')) {\n      const baseClassName = baseClassId.replace('ref:', '');\n      // Search for the class by name\n      const resolvedClass = this.db.prepare(`\n        SELECT id FROM nodes WHERE name = ? AND type = 'class'\n      `).get(baseClassName) as { id: string } | undefined;\n\n      if (!resolvedClass) {\n        return null;\n      }\n      baseClassId = resolvedClass.id;\n    }\n\n    // Find the method in the parent class\n    const method = this.db.prepare(`\n      SELECT n.id FROM nodes n\n      JOIN edges e ON e.target_id = n.id\n      WHERE e.source_id = ? AND e.type = 'contains' AND n.name = ?\n    `).get(baseClassId, methodName) as { id: string } | undefined;\n\n    return method?.id || null;\n  }\n\n  // ============ File Operations ============\n\n  upsertFile(filePath: string, language: string, hash: string): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO files (path, language, hash, analyzed_at)\n      VALUES (?, ?, ?, ?)\n    `);\n    stmt.run(filePath, language, hash, new Date().toISOString());\n  }\n\n  getFileHash(filePath: string): string | null {\n    const stmt = this.db.prepare(\"SELECT hash FROM files WHERE path = ?\");\n    const row = stmt.get(filePath) as { hash: string } | undefined;\n    return row?.hash || null;\n  }\n\n  deleteFileData(filePath: string): void {\n    this.db.prepare(\"DELETE FROM nodes WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM exports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM imports WHERE file_path = ?\").run(filePath);\n    this.db.prepare(\"DELETE FROM files WHERE path = ?\").run(filePath);\n  }\n\n  // ============ Stats ============\n\n  getStats(): {\n    totalFiles: number;\n    totalNodes: number;\n    totalEdges: number;\n    resolvedCalls: number;\n    unresolvedCalls: number;\n    httpEndpoints: number;\n    frameworkDependencies: number;\n    resolvedDependencies: number;\n    containers: number;\n  } {\n    const totalFiles = (this.db.prepare(\"SELECT COUNT(*) as count FROM files\").get() as { count: number }).count;\n    const totalNodes = (this.db.prepare(\"SELECT COUNT(*) as count FROM nodes\").get() as { count: number }).count;\n    const totalEdges = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls'\").get() as { count: number }).count;\n    const resolvedCalls = (this.db.prepare(\"SELECT COUNT(*) as count FROM edges WHERE type = 'calls' AND target_id NOT LIKE 'ref:%'\").get() as { count: number }).count;\n    const unresolvedCalls = totalEdges - resolvedCalls;\n    const httpEndpoints = (this.db.prepare(\"SELECT COUNT(*) as count FROM http_endpoints\").get() as { count: number }).count;\n    const frameworkDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies\").get() as { count: number }).count;\n    const resolvedDependencies = (this.db.prepare(\"SELECT COUNT(*) as count FROM framework_dependencies WHERE target_node_id IS NOT NULL\").get() as { count: number }).count;\n    const containers = (this.db.prepare(\"SELECT COUNT(*) as count FROM containers\").get() as { count: number }).count;\n\n    return {\n      totalFiles,\n      totalNodes,\n      totalEdges,\n      resolvedCalls,\n      unresolvedCalls,\n      httpEndpoints,\n      frameworkDependencies,\n      resolvedDependencies,\n      containers,\n    };\n  }\n\n  // ============ Container Operations ============\n\n  insertContainer(container: {\n    id: string;\n    name: string;\n    image?: string;\n    ports?: Array<{ host: number; container: number }>;\n    environment?: Record<string, string>;\n    depends_on?: string[];\n    networks?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO containers (id, name, image, ports, environment, depends_on, networks, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      container.id,\n      container.name,\n      container.image || null,\n      container.ports ? JSON.stringify(container.ports) : null,\n      container.environment ? JSON.stringify(container.environment) : null,\n      container.depends_on ? JSON.stringify(container.depends_on) : null,\n      container.networks ? JSON.stringify(container.networks) : null,\n      container.metadata ? JSON.stringify(container.metadata) : null\n    );\n  }\n\n  getContainer(id: string): any | null {\n    const stmt = this.db.prepare(\"SELECT * FROM containers WHERE id = ?\");\n    const row = stmt.get(id) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return {\n      id: row.id,\n      name: row.name,\n      image: row.image,\n      ports: row.ports ? JSON.parse(row.ports as string) : [],\n      environment: row.environment ? JSON.parse(row.environment as string) : {},\n      depends_on: row.depends_on ? JSON.parse(row.depends_on as string) : [],\n      networks: row.networks ? JSON.parse(row.networks as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  getAllContainers(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM containers\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      name: row.name,\n      image: row.image,\n      ports: row.ports ? JSON.parse(row.ports as string) : [],\n      environment: row.environment ? JSON.parse(row.environment as string) : {},\n      depends_on: row.depends_on ? JSON.parse(row.depends_on as string) : [],\n      networks: row.networks ? JSON.parse(row.networks as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  // ============ HTTP Endpoint Operations ============\n\n  insertHttpEndpoint(endpoint: {\n    id: string;\n    method: string;\n    path: string;\n    handler_node_id?: string;\n    container_id?: string;\n    middleware?: string[];\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO http_endpoints (id, method, path, handler_node_id, container_id, middleware, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      endpoint.id,\n      endpoint.method,\n      endpoint.path,\n      endpoint.handler_node_id || null,\n      endpoint.container_id || null,\n      endpoint.middleware ? JSON.stringify(endpoint.middleware) : null,\n      endpoint.metadata ? JSON.stringify(endpoint.metadata) : null\n    );\n  }\n\n  insertDatabaseOperation(dbOp: {\n    id: string;\n    node_id: string;\n    database_type: string;\n    operation: string;\n    collection?: string;\n    line?: number;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO database_operations (id, node_id, database_type, operation, collection, line, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dbOp.id,\n      dbOp.node_id,\n      dbOp.database_type,\n      dbOp.operation,\n      dbOp.collection || null,\n      dbOp.line || null,\n      dbOp.metadata ? JSON.stringify(dbOp.metadata) : null\n    );\n  }\n\n  findHttpEndpoint(method: string, path: string): any | null {\n    const stmt = this.db.prepare(\"SELECT * FROM http_endpoints WHERE method = ? AND path = ?\");\n    const row = stmt.get(method, path) as Record<string, unknown> | undefined;\n    if (!row) return null;\n    return {\n      id: row.id,\n      method: row.method,\n      path: row.path,\n      handler_node_id: row.handler_node_id,\n      container_id: row.container_id,\n      middleware: row.middleware ? JSON.parse(row.middleware as string) : [],\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    };\n  }\n\n  // ============ Framework Dependency Operations ============\n\n  insertFrameworkDependency(dep: {\n    id: string;\n    source_node_id: string;\n    target_node_id?: string;\n    framework: string;\n    pattern: string;\n    parameter_name?: string;\n    line?: number;\n    unresolved_name?: string;\n    metadata?: Record<string, unknown>;\n  }): void {\n    const stmt = this.db.prepare(`\n      INSERT OR REPLACE INTO framework_dependencies\n      (id, source_node_id, target_node_id, framework, pattern, parameter_name, line, unresolved_name, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    stmt.run(\n      dep.id,\n      dep.source_node_id,\n      dep.target_node_id || null,\n      dep.framework,\n      dep.pattern,\n      dep.parameter_name || null,\n      dep.line || null,\n      dep.unresolved_name || null,\n      dep.metadata ? JSON.stringify(dep.metadata) : null\n    );\n  }\n\n  getFrameworkDependencies(sourceNodeId: string): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM framework_dependencies WHERE source_node_id = ?\");\n    const rows = stmt.all(sourceNodeId) as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      source_node_id: row.source_node_id,\n      target_node_id: row.target_node_id,\n      framework: row.framework,\n      pattern: row.pattern,\n      parameter_name: row.parameter_name,\n      line: row.line,\n      unresolved_name: row.unresolved_name,\n      metadata: row.metadata ? JSON.parse(row.metadata as string) : {},\n    }));\n  }\n\n  getAllUnresolvedDependencies(): any[] {\n    const stmt = this.db.prepare(\"SELECT * FROM framework_dependencies WHERE target_node_id IS NULL\");\n    const rows = stmt.all() as Record<string, unknown>[];\n    return rows.map(row => ({\n      id: row.id,\n      source_node_id: row.source_node_id,\n      framework: row.framework,\n      pattern: row.pattern,\n      unresolved_name: row.unresolved_name,\n      line: row.line,\n    }));\n  }\n\n  updateFrameworkDependencyTarget(id: string, targetNodeId: string): void {\n    const stmt = this.db.prepare(\"UPDATE framework_dependencies SET target_node_id = ? 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object_name TEXT NOT NULL,\n      property_path TEXT NOT NULL,\n      full_path TEXT NOT NULL,\n      access_type TEXT NOT NULL,\n      file_path TEXT NOT NULL,\n      line INTEGER NOT NULL,\n      FOREIGN KEY (scope_node_id) REFERENCES nodes(id)\n    );\n  `);\n\n  // Return shapes table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS return_shapes (\n      id TEXT PRIMARY KEY,\n      function_id TEXT NOT NULL,\n      return_type TEXT,\n      object_shape TEXT,\n      line INTEGER NOT NULL,\n      return_expression TEXT,\n      FOREIGN KEY (function_id) REFERENCES nodes(id)\n    );\n  `);\n\n  // Data flows table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS data_flows (\n      id TEXT PRIMARY KEY,\n      source_id TEXT NOT NULL,\n      target_id TEXT NOT NULL,\n      data_type TEXT NOT NULL,\n      shape TEXT,\n      flow_type TEXT NOT NULL,\n      line INTEGER\n    );\n  `);\n\n  // Create indexes for performance\n  db.exec(`\n    CREATE INDEX IF NOT EXISTS idx_property_accesses_path\n  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