codehere 0.1.0 → 0.2.0

package/dist/infrastructure/storage/sqlite-embedding-repository.js

@@ -0,0 +1,162 @@
+/**
+ * Infrastructure: SQLiteEmbeddingRepository
+ * Implements IEmbeddingRepository using SQLite
+ */
+import { readFileSync, existsSync, mkdirSync, writeFileSync } from 'fs';
+import { join, dirname } from 'path';
+import { fileURLToPath } from 'url';
+import initSqlJs from 'sql.js';
+function getDbPath() {
+    const __filename = fileURLToPath(import.meta.url);
+    const __dirname = dirname(__filename);
+    const agentDir = join(__dirname, '../../..');
+    if (existsSync(join(agentDir, 'package.json'))) {
+        return join(agentDir, 'data', 'embeddings.sqlite');
+    }
+    return join(process.cwd(), 'agent', 'data', 'embeddings.sqlite');
+}
+function cosineSimilarity(a, b) {
+    if (a.length !== b.length)
+        return 0;
+    let dotProduct = 0;
+    let normA = 0;
+    let normB = 0;
+    for (let i = 0; i < a.length; i++) {
+        dotProduct += a[i] * b[i];
+        normA += a[i] * a[i];
+        normB += b[i] * b[i];
+    }
+    const denominator = Math.sqrt(normA) * Math.sqrt(normB);
+    return denominator === 0 ? 0 : dotProduct / denominator;
+}
+export class SQLiteEmbeddingRepository {
+    dbPath;
+    db = null;
+    constructor() {
+        this.dbPath = getDbPath();
+    }
+    async getDb() {
+        if (this.db)
+            return this.db;
+        const SQL = await initSqlJs();
+        const dbDir = dirname(this.dbPath);
+        if (!existsSync(dbDir)) {
+            mkdirSync(dbDir, { recursive: true });
+        }
+        if (existsSync(this.dbPath)) {
+            const buffer = readFileSync(this.dbPath);
+            this.db = new SQL.Database(buffer);
+        }
+        else {
+            this.db = new SQL.Database();
+        }
+        this.db.run(`
+      CREATE TABLE IF NOT EXISTS embeddings (
+        id INTEGER PRIMARY KEY AUTOINCREMENT,
+        filepath TEXT NOT NULL,
+        chunkIndex INTEGER NOT NULL,
+        content TEXT NOT NULL,
+        embedding TEXT NOT NULL
+      )
+    `);
+        this.db.run(`
+      CREATE INDEX IF NOT EXISTS idx_filepath ON embeddings(filepath)
+    `);
+        return this.db;
+    }
+    async store(chunks) {
+        const db = await this.getDb();
+        db.run('DELETE FROM embeddings');
+        const stmt = db.prepare(`
+      INSERT INTO embeddings (filepath, chunkIndex, content, embedding)
+      VALUES (?, ?, ?, ?)
+    `);
+        for (const chunk of chunks) {
+            if (!chunk.embedding)
+                continue;
+            stmt.run([
+                chunk.filepath,
+                chunk.chunkIndex || 0,
+                chunk.content,
+                JSON.stringify(chunk.embedding),
+            ]);
+        }
+        stmt.free();
+        this.saveDb();
+    }
+    async search(query, topK) {
+        // For now, return empty - will implement with query embedding
+        // This requires AI service, which creates circular dependency
+        // Will be resolved via dependency injection in application layer
+        return [];
+    }
+    async getByFilepath(filepath) {
+        const db = await this.getDb();
+        const stmt = db.prepare('SELECT * FROM embeddings WHERE filepath = ?');
+        stmt.bind([filepath]);
+        const results = [];
+        while (stmt.step()) {
+            const row = stmt.getAsObject();
+            results.push({
+                filepath: row.filepath,
+                content: row.content,
+                score: 1.0,
+                chunkIndex: row.chunkIndex,
+                embedding: JSON.parse(row.embedding),
+            });
+        }
+        stmt.free();
+        return results;
+    }
+    async isIndexed(filepath) {
+        const db = await this.getDb();
+        const stmt = db.prepare('SELECT COUNT(*) as count FROM embeddings WHERE filepath = ?');
+        stmt.bind([filepath]);
+        stmt.step();
+        const result = stmt.getAsObject();
+        stmt.free();
+        return result.count > 0;
+    }
+    async clear() {
+        const db = await this.getDb();
+        db.run('DELETE FROM embeddings');
+        this.saveDb();
+    }
+    saveDb() {
+        if (!this.db)
+            return;
+        const data = this.db.export();
+        const buffer = Buffer.from(data);
+        writeFileSync(this.dbPath, buffer);
+    }
+    /**
+     * Search with pre-computed query embedding
+     * (Used by application layer to avoid circular dependency)
+     */
+    async searchWithEmbedding(queryEmbedding, topK) {
+        const db = await this.getDb();
+        const stmt = db.prepare('SELECT * FROM embeddings');
+        const results = [];
+        while (stmt.step()) {
+            const row = stmt.getAsObject();
+            const embedding = JSON.parse(row.embedding);
+            const score = cosineSimilarity(queryEmbedding, embedding);
+            results.push({
+                chunk: {
+                    filepath: row.filepath,
+                    content: row.content,
+                    score,
+                    chunkIndex: row.chunkIndex,
+                    embedding,
+                },
+                score,
+            });
+        }
+        stmt.free();
+        return results
+            .sort((a, b) => b.score - a.score)
+            .slice(0, topK)
+            .map(r => r.chunk);
+    }
+}
+//# sourceMappingURL=sqlite-embedding-repository.js.map

package/dist/infrastructure/storage/sqlite-embedding-repository.js.map

@@ -0,0 +1 @@
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package/dist/infrastructure/storage/sqlite-knowledge-graph-repository.d.ts

@@ -0,0 +1,41 @@
+/**
+ * Infrastructure: SQLiteKnowledgeGraphRepository
+ * SQLite implementation of knowledge graph storage
+ *
+ * Clean Architecture: Infrastructure Layer
+ * Pattern: Repository Pattern Implementation
+ */
+import type { IKnowledgeGraphRepository } from '../../domain/interfaces/knowledge-graph-repository.interface.js';
+import type { KnowledgeNode, KnowledgeEdge, KnowledgeGraph, NodeType, RelationshipType } from '../../domain/entities/knowledge-node.js';
+export declare class SQLiteKnowledgeGraphRepository implements IKnowledgeGraphRepository {
+    private dbPath;
+    private db;
+    constructor();
+    private getDb;
+    storeNode(node: KnowledgeNode): Promise<void>;
+    getNodeById(id: string): Promise<KnowledgeNode | null>;
+    findNodesByCodebase(codebaseId: string, limit?: number): Promise<KnowledgeNode[]>;
+    findNodesByType(codebaseId: string, type: NodeType, limit?: number): Promise<KnowledgeNode[]>;
+    searchNodes(codebaseId: string, query: string, limit?: number): Promise<KnowledgeNode[]>;
+    updateNode(node: KnowledgeNode): Promise<void>;
+    deleteNode(id: string): Promise<void>;
+    storeEdge(edge: KnowledgeEdge): Promise<void>;
+    getEdgeById(id: string): Promise<KnowledgeEdge | null>;
+    findEdgesByCodebase(codebaseId: string, limit?: number): Promise<KnowledgeEdge[]>;
+    findEdgesByType(codebaseId: string, type: RelationshipType, limit?: number): Promise<KnowledgeEdge[]>;
+    findEdgesFromNode(nodeId: string, limit?: number): Promise<KnowledgeEdge[]>;
+    findEdgesToNode(nodeId: string, limit?: number): Promise<KnowledgeEdge[]>;
+    findEdgesBetween(fromNodeId: string, toNodeId: string): Promise<KnowledgeEdge[]>;
+    updateEdge(edge: KnowledgeEdge): Promise<void>;
+    deleteEdge(id: string): Promise<void>;
+    getGraphByCodebase(codebaseId: string): Promise<KnowledgeGraph>;
+    getNeighbors(nodeId: string, direction?: 'in' | 'out' | 'both'): Promise<KnowledgeNode[]>;
+    getNodesWithinHops(nodeId: string, maxHops: number): Promise<KnowledgeNode[]>;
+    findShortestPath(fromNodeId: string, toNodeId: string): Promise<KnowledgeNode[] | null>;
+    private mapRowToNode;
+    private mapRowToEdge;
+    private executeAndMapNodes;
+    private executeAndMapEdges;
+    private saveDb;
+}
+//# sourceMappingURL=sqlite-knowledge-graph-repository.d.ts.map

package/dist/infrastructure/storage/sqlite-knowledge-graph-repository.d.ts.map

@@ -0,0 +1 @@
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package/dist/infrastructure/storage/sqlite-knowledge-graph-repository.js

@@ -0,0 +1,417 @@
+/**
+ * Infrastructure: SQLiteKnowledgeGraphRepository
+ * SQLite implementation of knowledge graph storage
+ *
+ * Clean Architecture: Infrastructure Layer
+ * Pattern: Repository Pattern Implementation
+ */
+import { readFileSync, existsSync, mkdirSync, writeFileSync } from 'fs';
+import { join, dirname } from 'path';
+import { fileURLToPath } from 'url';
+import initSqlJs from 'sql.js';
+import { randomUUID } from 'crypto';
+function getDbPath() {
+    const __filename = fileURLToPath(import.meta.url);
+    const __dirname = dirname(__filename);
+    const agentDir = join(__dirname, '../../..');
+    if (existsSync(join(agentDir, 'package.json'))) {
+        return join(agentDir, 'data', 'knowledge-graph.sqlite');
+    }
+    return join(process.cwd(), 'agent', 'data', 'knowledge-graph.sqlite');
+}
+export class SQLiteKnowledgeGraphRepository {
+    dbPath;
+    db = null;
+    constructor() {
+        this.dbPath = getDbPath();
+    }
+    async getDb() {
+        if (this.db)
+            return this.db;
+        const SQL = await initSqlJs();
+        const dbDir = dirname(this.dbPath);
+        if (!existsSync(dbDir)) {
+            mkdirSync(dbDir, { recursive: true });
+        }
+        if (existsSync(this.dbPath)) {
+            const buffer = readFileSync(this.dbPath);
+            this.db = new SQL.Database(buffer);
+        }
+        else {
+            this.db = new SQL.Database();
+        }
+        // Create nodes table
+        this.db.run(`
+      CREATE TABLE IF NOT EXISTS knowledge_nodes (
+        id TEXT PRIMARY KEY,
+        codebaseId TEXT NOT NULL,
+        type TEXT NOT NULL,
+        label TEXT NOT NULL,
+        content TEXT NOT NULL,
+        metadata TEXT,
+        createdAt INTEGER NOT NULL,
+        lastUpdated INTEGER NOT NULL
+      )
+    `);
+        // Create edges table
+        this.db.run(`
+      CREATE TABLE IF NOT EXISTS knowledge_edges (
+        id TEXT PRIMARY KEY,
+        fromNodeId TEXT NOT NULL,
+        toNodeId TEXT NOT NULL,
+        type TEXT NOT NULL,
+        weight REAL,
+        metadata TEXT,
+        createdAt INTEGER NOT NULL,
+        FOREIGN KEY (fromNodeId) REFERENCES knowledge_nodes(id),
+        FOREIGN KEY (toNodeId) REFERENCES knowledge_nodes(id)
+      )
+    `);
+        // Create indexes
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_codebase ON knowledge_nodes(codebaseId)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_type ON knowledge_nodes(codebaseId, type)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_from_node ON knowledge_edges(fromNodeId)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_to_node ON knowledge_edges(toNodeId)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_edge_type ON knowledge_edges(type)`);
+        this.db.run(`CREATE INDEX IF NOT EXISTS idx_edge_codebase ON knowledge_edges(fromNodeId, toNodeId)`);
+        return this.db;
+    }
+    async storeNode(node) {
+        const db = await this.getDb();
+        const id = node.id || randomUUID();
+        const stmt = db.prepare(`
+      INSERT OR REPLACE INTO knowledge_nodes
+      (id, codebaseId, type, label, content, metadata, createdAt, lastUpdated)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+    `);
+        stmt.run([
+            id,
+            node.codebaseId,
+            node.type,
+            node.label,
+            node.content,
+            JSON.stringify(node.metadata ?? {}),
+            node.createdAt.getTime(),
+            node.lastUpdated.getTime(),
+        ]);
+        stmt.free();
+        this.saveDb();
+    }
+    async getNodeById(id) {
+        const db = await this.getDb();
+        const stmt = db.prepare('SELECT * FROM knowledge_nodes WHERE id = ?');
+        stmt.bind([id]);
+        if (!stmt.step()) {
+            stmt.free();
+            return null;
+        }
+        const row = stmt.getAsObject();
+        stmt.free();
+        return this.mapRowToNode(row);
+    }
+    async findNodesByCodebase(codebaseId, limit = 100) {
+        const db = await this.getDb();
+        const stmt = db.prepare(`
+      SELECT * FROM knowledge_nodes
+      WHERE codebaseId = ?
+      ORDER BY lastUpdated DESC
+      LIMIT ?
+    `);
+        stmt.bind([codebaseId, limit]);
+        return this.executeAndMapNodes(stmt);
+    }
+    async findNodesByType(codebaseId, type, limit = 100) {
+        const db = await this.getDb();
+        const stmt = db.prepare(`
+      SELECT * FROM knowledge_nodes
+      WHERE codebaseId = ? AND type = ?
+      ORDER BY lastUpdated DESC
+      LIMIT ?
+    `);
+        stmt.bind([codebaseId, type, limit]);
+        return this.executeAndMapNodes(stmt);
+    }
+    async searchNodes(codebaseId, query, limit = 50) {
+        const db = await this.getDb();
+        const searchTerm = `%${query}%`;
+        const stmt = db.prepare(`
+      SELECT * FROM knowledge_nodes
+      WHERE codebaseId = ?
+        AND (label LIKE ? OR content LIKE ?)
+      ORDER BY lastUpdated DESC
+      LIMIT ?
+    `);
+        stmt.bind([codebaseId, searchTerm, searchTerm, limit]);
+        return this.executeAndMapNodes(stmt);
+    }
+    async updateNode(node) {
+        if (!node.id) {
+            throw new Error('Node ID required for update');
+        }
+        await this.storeNode(node); // INSERT OR REPLACE handles update
+    }
+    async deleteNode(id) {
+        const db = await this.getDb();
+        // Delete edges first (foreign key constraints)
+        const deleteEdgesStmt = db.prepare(`
+      DELETE FROM knowledge_edges
+      WHERE fromNodeId = ? OR toNodeId = ?
+    `);
+        deleteEdgesStmt.run([id, id]);
+        deleteEdgesStmt.free();
+        // Delete node
+        const deleteNodeStmt = db.prepare('DELETE FROM knowledge_nodes WHERE id = ?');
+        deleteNodeStmt.run([id]);
+        deleteNodeStmt.free();
+        this.saveDb();
+    }
+    async storeEdge(edge) {
+        const db = await this.getDb();
+        const id = edge.id || randomUUID();
+        const stmt = db.prepare(`
+      INSERT OR REPLACE INTO knowledge_edges
+      (id, fromNodeId, toNodeId, type, weight, metadata, createdAt)
+      VALUES (?, ?, ?, ?, ?, ?, ?)
+    `);
+        stmt.run([
+            id,
+            edge.fromNodeId,
+            edge.toNodeId,
+            edge.type,
+            edge.weight ?? null,
+            JSON.stringify(edge.metadata ?? {}),
+            edge.createdAt.getTime(),
+        ]);
+        stmt.free();
+        this.saveDb();
+    }
+    async getEdgeById(id) {
+        const db = await this.getDb();
+        const stmt = db.prepare('SELECT * FROM knowledge_edges WHERE id = ?');
+        stmt.bind([id]);
+        if (!stmt.step()) {
+            stmt.free();
+            return null;
+        }
+        const row = stmt.getAsObject();
+        stmt.free();
+        return this.mapRowToEdge(row);
+    }
+    async findEdgesByCodebase(codebaseId, limit = 1000) {
+        const db = await this.getDb();
+        const stmt = db.prepare(`
+      SELECT e.* FROM knowledge_edges e
+      INNER JOIN knowledge_nodes n1 ON e.fromNodeId = n1.id
+      WHERE n1.codebaseId = ?
+      ORDER BY e.createdAt DESC
+      LIMIT ?
+    `);
+        stmt.bind([codebaseId, limit]);
+        return this.executeAndMapEdges(stmt);
+    }
+    async findEdgesByType(codebaseId, type, limit = 100) {
+        const db = await this.getDb();
+        const stmt = db.prepare(`
+      SELECT e.* FROM knowledge_edges e
+      INNER JOIN knowledge_nodes n1 ON e.fromNodeId = n1.id
+      WHERE n1.codebaseId = ? AND e.type = ?
+      ORDER BY e.createdAt DESC
+      LIMIT ?
+    `);
+        stmt.bind([codebaseId, type, limit]);
+        return this.executeAndMapEdges(stmt);
+    }
+    async findEdgesFromNode(nodeId, limit = 100) {
+        const db = await this.getDb();
+        const stmt = db.prepare(`
+      SELECT * FROM knowledge_edges
+      WHERE fromNodeId = ?
+      ORDER BY createdAt DESC
+      LIMIT ?
+    `);
+        stmt.bind([nodeId, limit]);
+        return this.executeAndMapEdges(stmt);
+    }
+    async findEdgesToNode(nodeId, limit = 100) {
+        const db = await this.getDb();
+        const stmt = db.prepare(`
+      SELECT * FROM knowledge_edges
+      WHERE toNodeId = ?
+      ORDER BY createdAt DESC
+      LIMIT ?
+    `);
+        stmt.bind([nodeId, limit]);
+        return this.executeAndMapEdges(stmt);
+    }
+    async findEdgesBetween(fromNodeId, toNodeId) {
+        const db = await this.getDb();
+        const stmt = db.prepare(`
+      SELECT * FROM knowledge_edges
+      WHERE fromNodeId = ? AND toNodeId = ?
+    `);
+        stmt.bind([fromNodeId, toNodeId]);
+        return this.executeAndMapEdges(stmt);
+    }
+    async updateEdge(edge) {
+        if (!edge.id) {
+            throw new Error('Edge ID required for update');
+        }
+        await this.storeEdge(edge); // INSERT OR REPLACE handles update
+    }
+    async deleteEdge(id) {
+        const db = await this.getDb();
+        const stmt = db.prepare('DELETE FROM knowledge_edges WHERE id = ?');
+        stmt.run([id]);
+        stmt.free();
+        this.saveDb();
+    }
+    async getGraphByCodebase(codebaseId) {
+        const nodes = await this.findNodesByCodebase(codebaseId);
+        const edges = await this.findEdgesByCodebase(codebaseId);
+        // Calculate metadata
+        const nodeTypes = {};
+        const relationshipTypes = {};
+        for (const node of nodes) {
+            nodeTypes[node.type] = (nodeTypes[node.type] || 0) + 1;
+        }
+        for (const edge of edges) {
+            relationshipTypes[edge.type] = (relationshipTypes[edge.type] || 0) + 1;
+        }
+        const metadata = {
+            nodeCount: nodes.length,
+            edgeCount: edges.length,
+            nodeTypes,
+            relationshipTypes,
+        };
+        return {
+            codebaseId,
+            nodes,
+            edges,
+            metadata,
+            createdAt: nodes.length > 0 ? nodes[0].createdAt : new Date(),
+            lastUpdated: nodes.length > 0 ? nodes[nodes.length - 1].lastUpdated : new Date(),
+        };
+    }
+    async getNeighbors(nodeId, direction = 'both') {
+        const db = await this.getDb();
+        const nodeIds = new Set();
+        if (direction === 'out' || direction === 'both') {
+            const outEdges = await this.findEdgesFromNode(nodeId);
+            outEdges.forEach(edge => nodeIds.add(edge.toNodeId));
+        }
+        if (direction === 'in' || direction === 'both') {
+            const inEdges = await this.findEdgesToNode(nodeId);
+            inEdges.forEach(edge => nodeIds.add(edge.fromNodeId));
+        }
+        const neighbors = [];
+        for (const id of nodeIds) {
+            const node = await this.getNodeById(id);
+            if (node) {
+                neighbors.push(node);
+            }
+        }
+        return neighbors;
+    }
+    async getNodesWithinHops(nodeId, maxHops) {
+        const visited = new Set();
+        const result = [];
+        const queue = [{ nodeId, hops: 0 }];
+        while (queue.length > 0) {
+            const { nodeId: currentId, hops } = queue.shift();
+            if (visited.has(currentId) || hops > maxHops) {
+                continue;
+            }
+            visited.add(currentId);
+            const node = await this.getNodeById(currentId);
+            if (node) {
+                result.push(node);
+            }
+            if (hops < maxHops) {
+                const neighbors = await this.getNeighbors(currentId);
+                for (const neighbor of neighbors) {
+                    if (neighbor.id && !visited.has(neighbor.id)) {
+                        queue.push({ nodeId: neighbor.id, hops: hops + 1 });
+                    }
+                }
+            }
+        }
+        return result;
+    }
+    async findShortestPath(fromNodeId, toNodeId) {
+        // BFS to find shortest path
+        const visited = new Set();
+        const queue = [{ nodeId: fromNodeId, path: [fromNodeId] }];
+        while (queue.length > 0) {
+            const { nodeId: currentId, path } = queue.shift();
+            if (visited.has(currentId)) {
+                continue;
+            }
+            visited.add(currentId);
+            if (currentId === toNodeId) {
+                // Found path, return nodes
+                const nodes = [];
+                for (const id of path) {
+                    const node = await this.getNodeById(id);
+                    if (node) {
+                        nodes.push(node);
+                    }
+                }
+                return nodes;
+            }
+            const neighbors = await this.getNeighbors(currentId, 'out');
+            for (const neighbor of neighbors) {
+                if (neighbor.id && !visited.has(neighbor.id)) {
+                    queue.push({ nodeId: neighbor.id, path: [...path, neighbor.id] });
+                }
+            }
+        }
+        return null; // No path found
+    }
+    mapRowToNode(row) {
+        return {
+            id: row.id,
+            codebaseId: row.codebaseId,
+            type: row.type,
+            label: row.label,
+            content: row.content,
+            metadata: JSON.parse(row.metadata ?? '{}'),
+            createdAt: new Date(row.createdAt),
+            lastUpdated: new Date(row.lastUpdated),
+        };
+    }
+    mapRowToEdge(row) {
+        return {
+            id: row.id,
+            fromNodeId: row.fromNodeId,
+            toNodeId: row.toNodeId,
+            type: row.type,
+            weight: row.weight ?? undefined,
+            metadata: JSON.parse(row.metadata ?? '{}'),
+            createdAt: new Date(row.createdAt),
+        };
+    }
+    executeAndMapNodes(stmt) {
+        const nodes = [];
+        while (stmt.step()) {
+            nodes.push(this.mapRowToNode(stmt.getAsObject()));
+        }
+        stmt.free();
+        return nodes;
+    }
+    executeAndMapEdges(stmt) {
+        const edges = [];
+        while (stmt.step()) {
+            edges.push(this.mapRowToEdge(stmt.getAsObject()));
+        }
+        stmt.free();
+        return edges;
+    }
+    saveDb() {
+        if (!this.db)
+            return;
+        const data = this.db.export();
+        const buffer = Buffer.from(data);
+        writeFileSync(this.dbPath, buffer);
+    }
+}
+//# sourceMappingURL=sqlite-knowledge-graph-repository.js.map

package/dist/infrastructure/storage/sqlite-knowledge-graph-repository.js.map

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