codebaseiq 0.2.0 → 0.3.1

package/CHANGELOG.md

@@ -9,6 +9,63 @@ names are separate packages, and no `scip-query` version is superseded in place.
 Entries at 0.20.0 and below record the predecessor package's history, retained
 for continuity; they document releases of `scip-query`, not of `codebaseiq`.
 
+## [0.3.1] — 2026-10-19
+
+### Fixes
+
+- **Large Rust workspaces can finish indexing.** Each language indexer was
+  stopped after 10 minutes, and rust-analyzer on a 15-crate Tauri workspace
+  had grown past that, so every refresh failed and `codebaseiq view` could not
+  prepare fresh evidence. The default limit is now 30 minutes.
+  `CODEBASEIQ_INDEXER_TIMEOUT_MS` still overrides it.
+- **Stopping a timed-out indexer on Windows no longer reports a cleanup
+  failure.** `taskkill /T /F` had one second to end the whole process tree,
+  which is too short for rust-analyzer with its cargo, rustc, and proc-macro
+  children, so the error ended with "Process-tree cleanup failed: spawnSync
+  taskkill.exe ETIMEDOUT". It now has ten seconds.
+
+## [0.3.0] — 2026-10-18
+
+### Changed (codebaseiq writes its own SQLite index)
+
+- **Indexing no longer needs Sourcegraph's `scip` CLI.** codebaseiq now writes
+  its SQLite index store itself instead of running `scip expt-convert`, and a
+  missing `scip` binary no longer stops a reindex. The tables, indexes, and
+  rows are unchanged: on seven real indexes from 15 KB to 160 MB, covering C#,
+  JavaScript, Python, Rust, and TypeScript, every row matched the converter's
+  output.
+- **Queries no longer read `index.scip`.** Exact occurrence call targets and
+  the Rust occurrence references and callees now decode the occurrences stored
+  in `index.db` instead of deserializing the whole `index.scip` on first use.
+  An index written by an earlier release is rebuilt in full on its next
+  refresh rather than patched, and until then those lookups report themselves
+  unavailable.
+- **The `codebaseiq-windows` package is retired.** It existed only to ship
+  `scip.exe`. New releases no longer depend on it, and the release coordinator
+  publishes a single package.
+- **Node.js 22.15 or newer is required** (previously 22.0), for the built-in
+  zstd compression the index store uses.
+
+### Breaking
+
+- `isScipInstalled`, `getScipVersion`, and `printScipInstallInstructions`
+  (`codebaseiq/runtime`) and `tryInstallScipCli` (`codebaseiq/reindex`) are
+  removed, and `CODEBASEIQ_SCIP_BIN` is no longer read. `check-deps` and
+  `setup` no longer check for a `scip` binary, and the setup report no longer
+  carries `scipCliInstalled` or a `scip-cli` step.
+- `chunks.occurrences` in `index.db` now holds codebaseiq's own encoding
+  (zstd-compressed JSON) instead of zstd-compressed SCIP protobuf. An external
+  tool that decoded the old bytes must change.
+
+### Fixes
+
+- **C# and VB solutions in a subfolder now index.** codebaseiq looked for a
+  `.sln` or project file only at the repository root, so a layout such as
+  `dotnet/App.slnx` handed scip-dotnet the root folder and indexing failed
+  with "Solution file not found". It now searches up to three folder levels
+  down, skipping hidden folders, `bin`, `obj`, and `node_modules`, and
+  recognizes `.slnx` solutions.
+
 ## [0.2.0] — 2026-10-04
 
 ### Added (reuse before writing, a trailing sentinel, and a code map)
@@ -22,12 +79,12 @@ for continuity; they document releases of `scip-query`, not of `codebaseiq`.
   (`--mode embeddings`); `--mode auto` walks the configured chain and reports
   every fallback. Results are labeled heuristic candidates, never a locator.
 - **An opt-in trailing sentinel watches agent edits** (`codebaseiq setup
-  --sentinel`). It parses each edited file directly, without waiting for a
+--sentinel`). It parses each edited file directly, without waiting for a
   reindex, and reports a new function whose body equals an existing one; at
   Stop it reports new code nothing imports or calls outside tests. It starts in
   shadow mode (logged, never shown) until a finding family passes a measured
   promotion gate (`npm run calibrate:sentinel`, `npm run
-  calibrate:sentinel-review`, then `codebaseiq setup --sentinel-live <family>`).
+calibrate:sentinel-review`, then `codebaseiq setup --sentinel-live <family>`).
   Hooks are installed for Claude Code and Codex.
 - **`codebaseiq view` opens a local code map.** Folders and files are drawn with
   their dependencies rolled up per level, cycles flagged; clicking into a symbol

package/README.md

@@ -29,7 +29,7 @@ is complete.
 
 ## Install
 
-codebaseiq requires Node.js 22 or newer. Node.js 24 LTS is recommended.
+codebaseiq requires Node.js 22.15 or newer. Node.js 24 LTS is recommended.
 
 ```bash
 npm install -g codebaseiq

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z=n.baseContentResultAt?n.baseContentResultAt:n.baseContentAt?Q(n.baseContentAt):H({projectRoot:e.config.projectRoot,base:o,preloadPaths:O(s)}),f=Z(k,P,$,z);if(f.unavailable)return r.available=!1,r.note=`Base content unavailable: ${f.unavailable.reason}`,r;if(f.definitions.length===0)return r;let I=f.definitions.slice(0,p);f.definitions.length>p&&(r.note=`helper scoring capped at ${p} of ${f.definitions.length} new symbols`);let d=k.calleeEvidenceMap(I,{semantic:h}),q=I.filter(i=>!d.incompleteSymbolIds.has(i.symbolId)&&!d.unavailableSymbolIds.has(i.symbolId)).map(i=>({def:i,callees:B((d.rows.get(i.symbolId)??[]).map(m=>m.symbol))}));for(let i of I)!d.incompleteSymbolIds.has(i.symbolId)&&!d.unavailableSymbolIds.has(i.symbolId)||r.skipped.push({helperShortName:u(i.symbol),helperFile:i.relativePath,reason:"compiler-resolved callee evidence is incomplete or unavailable \u2014 unsafe to score"});let 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l=[...a].filter(t=>e.has(t)).sort();return l.length>0?{migrationScope:"same-scope",migrationScopeReasons:[`shares migration-scope token(s): ${l.slice(0,5).join(", ")}`]}:{migrationScope:"possible-subtype",migrationScopeReasons:["no path/name tokens shared with the helper or already migrated files"]}}var X=new Set(["app","apps","common","component","components","helper","helpers","index","lib","package","packages","page","pages","route","routes","service","services","shared","spec","src","test","tests","util","utils"]);function R(e){return x(e.replace(/\.[^.]+$/,""))}function x(e){return e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9]+/).filter(n=>n.length>1&&!X.has(n))}function Y(e,n){let o=0;for(let a of e)(n.docFreq.get(a)??0)<=n.ubiquityThreshold&&(o+=1);return o}function Z(e,n,o,a){let l=[];for(let t of e.productionCallableDefinitions({files:[...n],requireFunctionLikeSymbol:!0})){if(!n.has(t.relativePath))continue;let p=o.get(t.relativePath)??t.relativePath,c=a(p);if(c.state==="unavailable")return{definitions:[],unavailable:c};(c.state==="absent"||!new RegExp(`\\b${E(t.leaf)}\\b`).test(c.content))&&l.push(t)}return{definitions:l}}function Q(e){return n=>{let o=e(n);return o===null?{state:"absent"}:{state:"present",content:o}}}function ee(e,n){return e.all(`SELECT DISTINCT ref_d.relative_path
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z=n.baseContentResultAt?n.baseContentResultAt:n.baseContentAt?Q(n.baseContentAt):H({projectRoot:e.config.projectRoot,base:o,preloadPaths:O(s)}),f=Z(k,P,$,z);if(f.unavailable)return r.available=!1,r.note=`Base content unavailable: ${f.unavailable.reason}`,r;if(f.definitions.length===0)return r;let I=f.definitions.slice(0,p);f.definitions.length>p&&(r.note=`helper scoring capped at ${p} of ${f.definitions.length} new symbols`);let d=k.calleeEvidenceMap(I,{semantic:h}),q=I.filter(i=>!d.incompleteSymbolIds.has(i.symbolId)&&!d.unavailableSymbolIds.has(i.symbolId)).map(i=>({def:i,callees:B((d.rows.get(i.symbolId)??[]).map(m=>m.symbol))}));for(let i of I)!d.incompleteSymbolIds.has(i.symbolId)&&!d.unavailableSymbolIds.has(i.symbolId)||r.skipped.push({helperShortName:u(i.symbol),helperFile:i.relativePath,reason:"compiler-resolved callee evidence is incomplete or unavailable \u2014 unsafe to score"});let V=T(e),M,G=()=>(M??=V.calleeIndex({minCallees:Math.min(3,l),scanLimit:g,semantic:h}),M);for(let{def:i,callees:m}of q){let b=u(i.symbol);if(m.size<l){r.skipped.push({helperShortName:b,helperFile:i.relativePath,reason:`fewer than ${l} meaningful callees \u2014 too small to score`});continue}let w=G(),N=Y(m,w);if(N===0){r.skipped.push({helperShortName:b,helperFile:i.relativePath,reason:"helper callee pattern is all project-wide infrastructure \u2014 too generic to score"});continue}let y=ee(e,i.symbolId);if(y.length===0){r.skipped.push({helperShortName:b,helperFile:i.relativePath,reason:"no references yet \u2014 covered by the new-dead check"});continue}r.helpersChecked+=1;let v=K({candidateIndex:w,changed:P,helperCallees:m,helperFile:i.relativePath,helperSymbol:i.symbol,minContainment:a,minSiteCoverage:t,migratedFiles:y});v.length!==0&&(v.sort((C,S)=>j(S.migrationScope)-j(C.migrationScope)||S.containment-C.containment||S.siteCoverage-C.siteCoverage||C.file.localeCompare(S.file)),r.findings.push({helperSymbol:i.symbol,helperShortName:b,helperFile:i.relativePath,helperShape:"specific-callee-cluster",helperCalleeCount:m.size,specificHelperCalleeCount:N,migratedFiles:y.sort(),leftovers:v.slice(0,J)}))}return r.findings.sort((i,m)=>(m.leftovers[0]?.containment??0)-(i.leftovers[0]?.containment??0)||i.helperFile.localeCompare(m.helperFile)),r.findings=r.findings.slice(0,c),r}function K(e){let n=[],o=U(e.helperSymbol,e.helperFile,e.migratedFiles),a=new Set;for(let l of e.helperCallees)for(let t of e.candidateIndex.candidateIndexesByCallee.get(l)??[])a.add(t);for(let l of a){let t=e.candidateIndex.corpus[l];if(t.symbol===e.helperSymbol||e.changed.has(t.file)||t.callees.has(e.helperSymbol))continue;let p=A(e.helperCallees,t.callees);if(p<e.minContainment)continue;let c=[...e.helperCallees].filter(s=>t.callees.has(s)),g=t.callees.size===0?0:c.length/t.callees.size;if(g<e.minSiteCoverage||!c.some(s=>(e.candidateIndex.docFreq.get(s)??0)<=e.candidateIndex.ubiquityThreshold))continue;let h=W(o,t.symbol,t.file);n.push({symbol:t.symbol,shortName:u(t.symbol),file:t.file,...h,containment:p,siteCoverage:g,uniqueSiteCalleeCount:Math.max(0,t.callees.size-c.length),sharedCallees:c.map(u).sort()})}return n}function j(e){return e==="same-scope"?2:e==="unknown"?1:0}function U(e,n,o){let a=new Set([...R(n),...x(F(e))]);for(let l of o)for(let t of R(l))a.add(t);return a}function W(e,n,o){let a=new Set([...R(o),...x(F(n))]);if(e.size===0||a.size===0)return{migrationScope:"unknown",migrationScopeReasons:["insufficient path/name tokens to infer migration scope"]};let l=[...a].filter(t=>e.has(t)).sort();return l.length>0?{migrationScope:"same-scope",migrationScopeReasons:[`shares migration-scope token(s): ${l.slice(0,5).join(", ")}`]}:{migrationScope:"possible-subtype",migrationScopeReasons:["no path/name tokens shared with the helper or already migrated files"]}}var X=new Set(["app","apps","common","component","components","helper","helpers","index","lib","package","packages","page","pages","route","routes","service","services","shared","spec","src","test","tests","util","utils"]);function R(e){return x(e.replace(/\.[^.]+$/,""))}function x(e){return e.replace(/([a-z0-9])([A-Z])/g,"$1 $2").toLowerCase().split(/[^a-z0-9]+/).filter(n=>n.length>1&&!X.has(n))}function Y(e,n){let o=0;for(let a of e)(n.docFreq.get(a)??0)<=n.ubiquityThreshold&&(o+=1);return o}function Z(e,n,o,a){let l=[];for(let t of e.productionCallableDefinitions({files:[...n],requireFunctionLikeSymbol:!0})){if(!n.has(t.relativePath))continue;let 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      FROM mentions m
      JOIN chunks c ON m.chunk_id = c.id
      JOIN documents ref_d ON c.document_id = ref_d.id
      WHERE m.symbol_id = ?
        AND m.role != 1
        ${e.pathExclusionsFor("ref_d")}`,n).map(a=>a.relative_path)}export{le as a};
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+//# sourceMappingURL=chunk-53ELMZRF.js.map

package/dist/{chunk-OJFLPVBP.js → chunk-57OPIQFM.js}

@@ -1,2 +1,2 @@
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-//# sourceMappingURL=chunk-OJFLPVBP.js.map
+import{a as O,b as T,c as y,f as I,g as G,i as $,l as Y,m as q,n as K}from"./chunk-KLX6NSWT.js";import{Y as _}from"./chunk-G7GVV2TV.js";import{a as N}from"./chunk-GV2CEZCW.js";import{g as U,k as P,l as h,n as z,p as E,w as g}from"./chunk-7GAK2F3H.js";import{a as J,d as f}from"./chunk-3LCDIREB.js";var ue={references:$,referenceMap:Y,referenceEvidenceMap:q,callerMap:(e,i)=>I(e).callerMap(i),calleeMap:X,calleeEvidenceMap:Q};function X(e,i,r={}){return Q(e,i,r).rows}function Q(e,i,r={}){let a=J(),o=new Map,l=G(e,i),n=[],c=[],m=0,p=0,d=0,w=0,R=0,H=0,k=0,S=new Set,v=new Set;for(let{definition:t,callees:s}of l.hits)R+=1,o.set(t.symbolId,s),s.length>0&&(H+=1,k+=s.length);let u=Z(e,l.hits);if(u.entries.length>0&&f("semantic.callees.prefetch-cache-write",()=>E(e,u.entries),()=>({entries:u.entries.length,sourceMissing:u.sourceMissing,skippedUnsupportedLanguage:u.skippedUnsupportedLanguage})),f("semantic.callees.cache-scan",()=>{for(let[t,s]of O(l.misses)){if(!y(t)){a&&(m+=s.length);continue}let j=g(e,t);if(!j){a&&(p+=s.length),c.push(...s);continue}let A=h(e,t,j),D=V(e,t);if(!D){c.push(...s);continue}let W=z(e,t,A,D);for(let M of s){let L=W.get(M.symbol)??null;if(L!==null){let B=te(L);if(B){a&&(d+=1),o.set(M.symbolId,B);continue}a&&(w+=1)}n.push({def:M,contentHash:A,depsDigest:D})}}},()=>({definitions:i.length,skippedUnsupportedLanguage:m,sourceMissing:p,cacheHits:d,parseFailures:w,misses:n.length,unkeyed:c.length,inMemoryHits:R,inMemoryRows:H,inMemoryCalleeCount:k,resultRows:o.size})),n.length===0&&c.length===0)return{rows:o,incompleteSymbolIds:S,unavailableSymbolIds:v};let x=[...c,...n.map(t=>t.def)],F=0,C=f("semantic.callees.compute-misses",()=>{let t=K(e,x,r.resolveProvider);for(let s of t.incompleteSymbolIds)S.add(s);for(let s of t.unavailableSymbolIds)v.add(s);return F=t.rows.size,t.rows},()=>({definitions:x.length,misses:n.length,unkeyed:c.length,rows:F}));for(let[t,s]of C)o.set(t,s);let b=n.filter(t=>C.has(t.def.symbolId)&&I(e).capability("semantic-callees",t.def.relativePath).available).map(t=>({relativePath:t.def.relativePath,symbol:t.def.symbol,contentHash:t.contentHash,depsDigest:t.depsDigest,payload:JSON.stringify(C.get(t.def.symbolId)??[])}));return b.length>0?f("semantic.callees.cache-write",()=>E(e,b),()=>({entries:b.length})):f("semantic.callees.cache-write-skip",()=>{},()=>({reason:"provider-unavailable",misses:n.length})),{rows:o,incompleteSymbolIds:S,unavailableSymbolIds:v}}function Z(e,i){let r=[],a=new Map,o=0,l=0;for(let{definition:n,callees:c}of i){if(!y(n.relativePath)){l+=1;continue}if(!a.has(n.relativePath)){let p=g(e,n.relativePath),d=p?V(e,n.relativePath):null;a.set(n.relativePath,p&&d?{contentHash:h(e,n.relativePath,p),depsDigest:d}:null)}let m=a.get(n.relativePath);if(!m){o+=1;continue}r.push({relativePath:n.relativePath,symbol:n.symbol,contentHash:m.contentHash,depsDigest:m.depsDigest,payload:JSON.stringify(c)})}return{entries:r,sourceMissing:o,skippedUnsupportedLanguage:l}}var ee="typescript-callees-v3-incomplete-scan";function V(e,i){let r=y(i);if(r==="typescript")return _(e,i,ee)?.key??null;let a=ie(e,i);return r==="rust"?P(JSON.stringify({kind:"semantic-callees",language:r,engine:T(e.config.projectRoot),positionMapping:"nearby-leaf-v2-callsite-line",depsDigest:a})):a}function te(e){try{return JSON.parse(e)}catch{return null}}var ne=U("semantic-deps-digest",{clearGroups:["whole-project","source-file"]});function ie(e,i){return ne.get(e,i,()=>{let a=[...N(e).get(i)??[]].sort().map(o=>`${o}:${h(e,o,g(e,o))}`);return P(a.join("|"))})}export{ue as a};
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package/dist/{chunk-2E6BTWER.js → chunk-5CR4U5X2.js}

@@ -1,4 +1,4 @@
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       COUNT(*) AS ref_count,
       COUNT(DISTINCT ref_d.id) AS file_count,
@@ -23,4 +23,4 @@ import{a as u}from"./chunk-OJFLPVBP.js";import{f as d}from"./chunk-57KEZDPT.js";
     GROUP BY gs.id
     ORDER BY ref_count DESC
     LIMIT ?`,...c,l).filter(s=>!e.isIgnored(s.defined_in)).map(s=>({symbol:s.symbol,shortName:r(s.symbol),refCount:s.ref_count,fileCount:s.file_count,definedIn:s.defined_in,basis:"scip-cross-file-mentions",countUnit:"reference-occurrences"}));return o.length>0?{rows:o,coverage:{semanticEvidence:{enabled:!1,status:"disabled",incompleteSymbolCount:0,unavailableSymbolCount:0}}}:p(e,t,l)}function I(e,i={}){return b(e,i)}function p(e,i,l){let t=a(e,{scope:i}).filter(o=>!e.isIgnored(o.relativePath)),n=d(e,t,{limit:500,semanticEvidence:u}),c=t.filter(o=>!n.incompleteSymbolIds.has(o.symbolId)&&!n.unavailableSymbolIds.has(o.symbolId)).map(o=>y(o,n.rows.get(o.symbolId)??[])).filter(o=>o.refCount>0).sort((o,s)=>s.refCount-o.refCount||s.fileCount-o.fileCount).slice(0,l),m=n.incompleteSymbolIds.size>0&&n.unavailableSymbolIds.size>0?"incomplete-and-unavailable":n.incompleteSymbolIds.size>0?"incomplete":n.unavailableSymbolIds.size>0?"unavailable":"complete";return{rows:c,coverage:{semanticEvidence:{enabled:!0,status:m,incompleteSymbolCount:n.incompleteSymbolIds.size,unavailableSymbolCount:n.unavailableSymbolIds.size}}}}function y(e,i){let l=i.filter(t=>t.file!==e.relativePath);return{symbol:e.symbol,shortName:r(e.symbol),refCount:l.length,fileCount:new Set(l.map(t=>t.file)).size,definedIn:e.relativePath,basis:"source-backed-incoming-evidence",countUnit:"distinct-incoming-evidence-rows"}}export{b as a,f as b,I as c};
-//# sourceMappingURL=chunk-2E6BTWER.js.map
+//# sourceMappingURL=chunk-5CR4U5X2.js.map

package/dist/{chunk-IYBIBMPF.js → chunk-5FWR5HLG.js}

@@ -1,4 +1,4 @@
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+import{d as q}from"./chunk-T75DS2E6.js";import{a as S,c as ne,d as F}from"./chunk-YT4DVWUV.js";import{a as k,c as ee,d as te}from"./chunk-RCIGX23V.js";import{a as j,f as O,i as I}from"./chunk-R2NOK63J.js";import{ca as J,da as Z}from"./chunk-UQYQBLJX.js";import{createHash as xe}from"crypto";import{existsSync as Le,mkdirSync as De}from"fs";import{dirname as re,join as ke}from"path";import V from"better-sqlite3";var Fe="evidence.db";var we=["source-facts","callable-units","definition-exclusions","doc-path-tokens","react-component-behavior-profiles"],M=new Set(we),Re=25e4,Ae=512*1024*1024,Pe=6e4,N=new WeakMap;te({name:"evidence-connections",close:se});var je=S("evidence-content-hash",{clearGroups:["whole-project","source-file"]}),Oe=S("evidence-project-fingerprint",{clearGroups:["whole-project"]}),f="evidence-v1",_="version NOT LIKE 'evidence-%'";function ie(e){return xe("sha256").update(e).digest("hex")}function Ct(e,n,t){return je.get(e,n,()=>ie(t))}function ae(e){return Oe.get(e,"current",()=>{try{if(!e.generation.metadataRaw)return null;let n=q(e.generation.metadataRaw);if(n.kind!=="legacy"&&n.kind!=="supported"||!n.capabilities.usableForEvidenceCache)return null;let t=n.metadata,r=[...t.indexedLanguages??[]].sort();return ie(JSON.stringify({fingerprint:t.fingerprint,indexedLanguages:r,status:t.status}))}catch(n){return y("project fingerprint unavailable",n),null}})}function y(e,n){process.env.CODEBASEIQ_DEBUG&&console.error(`evidence-cache: ${e}: ${n instanceof Error?n.message:String(n)}`)}function m(e){if(N.has(e))return N.get(e)??null;let n=null;try{let t=new V(k(ke(re(e.config.dbPath),Fe)));t.pragma("journal_mode = WAL"),t.pragma("busy_timeout = 5000"),t.pragma("synchronous = NORMAL"),t.exec(`
       CREATE TABLE IF NOT EXISTS file_evidence (
         kind TEXT NOT NULL,
         relative_path TEXT NOT NULL,
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@@ -1,2 +1,2 @@
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package/dist/{chunk-NTRW52UR.js → chunk-5MPBSFZH.js}

@@ -1,2 +1,2 @@
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u(i,t,{query:g,domain:"react-component",basis:"jsx-structure",symbolA:e=>e.componentA,symbolB:e=>e.componentB,evidenceBuckets:e=>[["component",e.sharedComponents],["tag",e.sharedNativeTags],["prop",e.sharedProps],["event",e.sharedEvents],["binding",e.sharedBindings]]})}function u(i,t,e){return e.query(i,t).filter(n=>n.fileA!==n.fileB).filter(n=>e.acceptPair?.(n)??!0).map(n=>({domain:e.domain,basis:e.basis,symbolA:e.symbolA(n),fileA:n.fileA,symbolB:e.symbolB(n),fileB:n.fileB,similarity:n.similarity,sharedEvidence:G(...e.evidenceBuckets(n)),sharedCallees:[]}))}function L(i,t){return u(i,t,{query:F,domain:"react-hook",basis:"react-behavior",symbolA:e=>e.componentA,symbolB:e=>e.componentB,acceptPair:w,evidenceBuckets:e=>[["hook",e.sharedHooks],["react-hook",e.sharedReactHooks],["effect",e.sharedEffects],["state",e.sharedState],["request",e.sharedRequests],["handler",e.sharedHandlers],["action",e.sharedHandlerVerbs]]})}var I=new 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