codebase-context 1.6.1 → 1.6.2

package/dist/memory/store.js

@@ -55,6 +55,15 @@ export async function appendMemoryFile(memoryPath, memory) {
     await writeMemoriesFile(memoryPath, existing);
     return { status: 'added', memory };
 }
+export async function removeMemory(memoryPath, id) {
+    const existing = await readMemoriesFile(memoryPath);
+    const index = existing.findIndex((m) => m.id === id);
+    if (index === -1)
+        return { status: 'not_found' };
+    existing.splice(index, 1);
+    await writeMemoriesFile(memoryPath, existing);
+    return { status: 'removed' };
+}
 export function filterMemories(memories, filters) {
     const { category, type, query } = filters;
     let filtered = memories;

package/dist/memory/store.js.map

@@ -1 +1 @@
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package/dist/patterns/semantics.d.ts

@@ -1,3 +1,9 @@
+/**
+ * Register a set of pattern names within a category that are complementary
+ * (should appear together, not treated as conflicts).
+ * Called by framework analyzers at initialization.
+ */
+export declare function registerComplementaryPatterns(category: string, names: string[]): void;
 export declare function isComplementaryPatternConflict(category: string, primaryName: string, alternativeName: string): boolean;
 export declare function isComplementaryPatternCategory(category: string, patternNames: string[]): boolean;
 export declare function shouldSkipLegacyTestingFrameworkCategory(category: string, patterns: Record<string, any>): boolean;

package/dist/patterns/semantics.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"semantics.d.ts","sourceRoot":"","sources":["../../src/patterns/semantics.ts"],"names":[],"mappings":"AAMA,wBAAgB,8BAA8B,CAC5C,QAAQ,EAAE,MAAM,EAChB,WAAW,EAAE,MAAM,EACnB,eAAe,EAAE,MAAM,GACtB,OAAO,CAUT;AAED,wBAAgB,8BAA8B,CAAC,QAAQ,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,GAAG,OAAO,CAKhG;AAED,wBAAgB,wCAAwC,CACtD,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,GAC5B,OAAO,CAET"}
+{"version":3,"file":"semantics.d.ts","sourceRoot":"","sources":["../../src/patterns/semantics.ts"],"names":[],"mappings":"AAIA;;;;GAIG;AACH,wBAAgB,6BAA6B,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,IAAI,CAMrF;AAMD,wBAAgB,8BAA8B,CAC5C,QAAQ,EAAE,MAAM,EAChB,WAAW,EAAE,MAAM,EACnB,eAAe,EAAE,MAAM,GACtB,OAAO,CAWT;AAED,wBAAgB,8BAA8B,CAAC,QAAQ,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,GAAG,OAAO,CAIhG;AAED,wBAAgB,wCAAwC,CACtD,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,GAC5B,OAAO,CAET"}

package/dist/patterns/semantics.js

@@ -1,22 +1,38 @@
-const COMPLEMENTARY_REACTIVITY_PATTERNS = new Set(['computed', 'effect']);
+// Complementary pattern pairs are registered by analyzers at startup.
+// This keeps the core logic framework-agnostic.
+const complementaryPairs = new Map();
+/**
+ * Register a set of pattern names within a category that are complementary
+ * (should appear together, not treated as conflicts).
+ * Called by framework analyzers at initialization.
+ */
+export function registerComplementaryPatterns(category, names) {
+    const existing = complementaryPairs.get(category) ?? new Set();
+    for (const name of names) {
+        existing.add(name.trim().toLowerCase());
+    }
+    complementaryPairs.set(category, existing);
+}
 function normalizePatternName(name) {
     return name.trim().toLowerCase();
 }
 export function isComplementaryPatternConflict(category, primaryName, alternativeName) {
-    if (category !== 'reactivity')
+    const set = complementaryPairs.get(category);
+    if (!set)
         return false;
     const primary = normalizePatternName(primaryName);
     const alternative = normalizePatternName(alternativeName);
-    if (!COMPLEMENTARY_REACTIVITY_PATTERNS.has(primary))
+    if (!set.has(primary))
         return false;
-    if (!COMPLEMENTARY_REACTIVITY_PATTERNS.has(alternative))
+    if (!set.has(alternative))
         return false;
     return primary !== alternative;
 }
 export function isComplementaryPatternCategory(category, patternNames) {
-    if (category !== 'reactivity' || patternNames.length < 2)
+    const set = complementaryPairs.get(category);
+    if (!set || patternNames.length < 2)
         return false;
-    return patternNames.every((name) => COMPLEMENTARY_REACTIVITY_PATTERNS.has(normalizePatternName(name)));
+    return patternNames.every((name) => set.has(normalizePatternName(name)));
 }
 export function shouldSkipLegacyTestingFrameworkCategory(category, patterns) {
     return category === 'testingFramework' && Boolean(patterns.unitTestFramework?.primary);

package/dist/patterns/semantics.js.map

@@ -1 +1 @@
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+{"version":3,"file":"semantics.js","sourceRoot":"","sources":["../../src/patterns/semantics.ts"],"names":[],"mappings":"AAAA,sEAAsE;AACtE,gDAAgD;AAChD,MAAM,kBAAkB,GAA6B,IAAI,GAAG,EAAE,CAAC;AAE/D;;;;GAIG;AACH,MAAM,UAAU,6BAA6B,CAAC,QAAgB,EAAE,KAAe;IAC7E,MAAM,QAAQ,GAAG,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,IAAI,GAAG,EAAU,CAAC;IACvE,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC,CAAC;IAC1C,CAAC;IACD,kBAAkB,CAAC,GAAG,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;AAC7C,CAAC;AAED,SAAS,oBAAoB,CAAC,IAAY;IACxC,OAAO,IAAI,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;AACnC,CAAC;AAED,MAAM,UAAU,8BAA8B,CAC5C,QAAgB,EAChB,WAAmB,EACnB,eAAuB;IAEvB,MAAM,GAAG,GAAG,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC7C,IAAI,CAAC,GAAG;QAAE,OAAO,KAAK,CAAC;IAEvB,MAAM,OAAO,GAAG,oBAAoB,CAAC,WAAW,CAAC,CAAC;IAClD,MAAM,WAAW,GAAG,oBAAoB,CAAC,eAAe,CAAC,CAAC;IAE1D,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC;QAAE,OAAO,KAAK,CAAC;IACpC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,WAAW,CAAC;QAAE,OAAO,KAAK,CAAC;IAExC,OAAO,OAAO,KAAK,WAAW,CAAC;AACjC,CAAC;AAED,MAAM,UAAU,8BAA8B,CAAC,QAAgB,EAAE,YAAsB;IACrF,MAAM,GAAG,GAAG,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC7C,IAAI,CAAC,GAAG,IAAI,YAAY,CAAC,MAAM,GAAG,CAAC;QAAE,OAAO,KAAK,CAAC;IAClD,OAAO,YAAY,CAAC,KAAK,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAC3E,CAAC;AAED,MAAM,UAAU,wCAAwC,CACtD,QAAgB,EAChB,QAA6B;IAE7B,OAAO,QAAQ,KAAK,kBAAkB,IAAI,OAAO,CAAC,QAAQ,CAAC,iBAAiB,EAAE,OAAO,CAAC,CAAC;AACzF,CAAC"}

package/dist/preflight/evidence-lock.d.ts

@@ -44,6 +44,8 @@ interface BuildEvidenceLockInput {
         memory: string;
     }>;
     patternConflicts?: PatternConflict[];
+    /** When search quality is low_confidence, evidence lock MUST block edits. */
+    searchQualityStatus?: 'ok' | 'low_confidence';
 }
 export declare function buildEvidenceLock(input: BuildEvidenceLockInput): EvidenceLock;
 export {};

package/dist/preflight/evidence-lock.d.ts.map

@@ -1 +1 @@
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package/dist/preflight/evidence-lock.js

@@ -78,7 +78,7 @@ export function buildEvidenceLock(input) {
     let nextAction;
     if (status === 'block') {
         nextAction =
-            'Broaden the query or run refresh_index, then retry with intent="edit" to collect stronger evidence.';
+            'Broaden the query or run refresh_index, then retry to collect stronger evidence before editing.';
     }
     else if (status === 'warn') {
         nextAction = 'Proceed cautiously and confirm at least one golden file before editing.';
@@ -116,10 +116,24 @@ export function buildEvidenceLock(input) {
                 'Evidence is contradictory or insufficient. Resolve pattern conflicts or gather more context before editing.';
         }
     }
+    // Hard gate: low search quality overrides everything.
+    // If retrieval is bad, we CANNOT claim readiness regardless of evidence counts.
+    // Surface low-confidence guidance so callers see the actual reason edits are blocked.
+    if (input.searchQualityStatus === 'low_confidence') {
+        if (status === 'pass')
+            status = 'warn';
+        nextAction = 'Search quality is low. Refine query or add concrete symbols before editing.';
+        if (!gaps.includes('Search quality is low')) {
+            gaps.push('Search quality is low — evidence may be unreliable');
+        }
+    }
+    const readyToEdit = status === 'pass' &&
+        (!epistemicStress || !epistemicStress.abstain) &&
+        input.searchQualityStatus !== 'low_confidence';
     return {
         mode: 'triangulated',
         status,
-        readyToEdit: status === 'pass' && (!epistemicStress || !epistemicStress.abstain),
+        readyToEdit,
         score,
         sources,
         ...(gaps.length > 0 && { gaps }),

package/dist/preflight/evidence-lock.js.map

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package/dist/types/index.d.ts

@@ -22,6 +22,8 @@ export interface FrameworkAnalyzer {
     summarize?(chunk: CodeChunk): string;
     /** Priority - higher number = higher priority (default: 50) */
     readonly priority: number;
+    /** Get a regex to extract a code snippet for a detected pattern (optional) */
+    getSnippetPattern?(category: string, name: string): RegExp | null;
 }
 export interface AnalysisResult {
     filePath: string;

package/dist/types/index.d.ts.map

@@ -1 +1 @@
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package/dist/utils/dependency-detection.d.ts

@@ -14,5 +14,6 @@ export declare function readPackageJson(rootPath: string): Promise<Record<string
  * categorize a dependency based on the known list
  */
 export declare function categorizeDependency(name: string): Dependency['category'];
-export { scanWorkspacePackageJsons, detectWorkspaceType, aggregateWorkspaceDependencies, normalizePackageVersion, WorkspacePackageJson, WorkspaceType } from './workspace-detection.js';
+export { scanWorkspacePackageJsons, detectWorkspaceType, aggregateWorkspaceDependencies, normalizePackageVersion } from './workspace-detection.js';
+export type { WorkspacePackageJson, WorkspaceType } from './workspace-detection.js';
 //# sourceMappingURL=dependency-detection.d.ts.map

package/dist/utils/dependency-detection.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"dependency-detection.d.ts","sourceRoot":"","sources":["../../src/utils/dependency-detection.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,UAAU,IAAI,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAEnE,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,gBAAgB,CAAC,UAAU,CAAC,CAAC;CACxC;AAED;;;GAGG;AACH,eAAO,MAAM,kBAAkB,EAAE,MAAM,CAAC,MAAM,EAAE,UAAU,CAAC,UAAU,CAAC,CA6DrE,CAAC;AAEF,wBAAsB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAcvF;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,MAAM,GAAG,UAAU,CAAC,UAAU,CAAC,CAczE;AAGD,OAAO,EACL,yBAAyB,EACzB,mBAAmB,EACnB,8BAA8B,EAC9B,uBAAuB,EACxB,MAAM,0BAA0B,CAAC;AAClC,YAAY,EAAE,oBAAoB,EAAE,aAAa,EAAE,MAAM,0BAA0B,CAAC"}

package/dist/utils/dependency-detection.js.map

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package/docs/capabilities.md

@@ -1,75 +1,92 @@
-# Capabilities Reference
-
-Technical reference for what `codebase-context` ships today. For the user-facing overview, see [README.md](../README.md).
-
-## Tool Surface
-
-10 MCP tools + 1 optional resource (`codebase://context`).
-
-### Core Tools
-
-| Tool | Input | Output |
-| --- | --- | --- |
-| `search_codebase` | `query`, optional `intent`, `limit`, `filters` | Ranked results with enrichment. Preflight card when `intent` is `edit`/`refactor`/`migrate`. |
-| `get_team_patterns` | optional `category` | Pattern frequencies, trends, golden files, conflicts |
-| `get_component_usage` | `name` (import source) | Files importing the given package/module |
-| `remember` | `type`, `category`, `memory`, `reason` | Persists to `.codebase-context/memory.json` |
-| `get_memory` | optional `category`, `type`, `query`, `limit` | Memories with confidence decay scoring |
-
-### Utility Tools
-
-| Tool | Purpose |
-| --- | --- |
-| `get_codebase_metadata` | Framework, dependencies, project stats |
-| `get_style_guide` | Style rules from project documentation |
-| `detect_circular_dependencies` | Import cycles in the file graph |
-| `refresh_index` | Full or incremental re-index + git memory extraction |
-| `get_indexing_status` | Index state, progress, last stats |
-
-## Retrieval Pipeline
-
-Ordered by execution:
-
-1. **Intent classification** — EXACT_NAME (for symbols), CONCEPTUAL, FLOW, CONFIG, WIRING. Sets keyword/semantic weight ratio.
-2. **Query expansion** — bounded domain term expansion for conceptual queries.
-3. **Dual retrieval** — keyword (Fuse.js) + semantic (local embeddings or OpenAI).
-4. **RRF fusion** — Reciprocal Rank Fusion (k=60) across all retrieval channels.
-5. **Structure-aware boosting** — import centrality, composition root boost, path overlap, definition demotion for action queries.
-6. **Contamination control** — test file filtering for non-test queries.
-7. **File deduplication** — best chunk per file.
-8. **Stage-2 reranking** — cross-encoder (`Xenova/ms-marco-MiniLM-L-6-v2`) triggers when the score between the top files are very close. CPU-only, top-10 bounded.
-9. **Result enrichment** — pattern momentum (`trend`/`patternWarning`), relationships (`importedBy`/`imports`/`testedIn`/`lastModified`), related memories, search quality assessment.
-
-## Preflight Card (Edit Intent)
-
-Returned when search `intent` is `edit`, `refactor`, or `migrate`:
-
-- `riskLevel`: low / medium / high (based on circular deps + impact breadth + failure memories)
-- `confidence`: fresh / aging / stale (based on index age)
-- `evidenceLock`: triangulated score (0-100) from code + patterns + memories, with `readyToEdit` boolean
-- `epistemicStress`: triggers (pattern conflicts, stale memories, thin evidence), abstain signal
-- `preferredPatterns` / `avoidPatterns`: from team pattern analysis with adoption % and trend
-- `goldenFiles`: top exemplar files by modern pattern density
-- `impactCandidates`: files importing the result files (from import graph)
-- `failureWarnings`: recent failure memories related to the query
-- `patternConflicts`: when two patterns in the same category are both > 20% adoption
-
-## Memory System
-
-- 4 types: `convention`, `decision`, `gotcha`, `failure`
-- Confidence decay: conventions never decay, decisions 180-day half-life, gotchas/failures 90-day half-life
-- Stale threshold: memories below 30% confidence are flagged
-- Git auto-extraction: conventional commits from last 90 days
-- Surface locations: `search_codebase` results, `get_team_patterns` responses, preflight cards
-
-## Indexing
-
-- Initial: full scan → chunking → embedding → vector DB (LanceDB) + keyword index (Fuse.js)
-- Incremental: SHA-256 manifest diffing, selective embed/delete, full intelligence regeneration
-- Auto-heal: corrupted index triggers automatic full re-index on next search
-- Storage: `.codebase-context/` directory (memory.json + generated files)
-
-## Analyzers
-
-- **Angular**: signals, standalone components, control flow syntax, lifecycle hooks, DI patterns, component metadata
-- **Generic**: 30+ languages — TypeScript, JavaScript, Python, Java, Kotlin, C/C++, C#, Go, Rust, PHP, Ruby, Swift, Scala, Shell, config/markup formats
+# Capabilities Reference
+
+Technical reference for what `codebase-context` ships today. For the user-facing overview, see [README.md](../README.md).
+
+## Tool Surface
+
+10 MCP tools + 1 optional resource (`codebase://context`).
+
+### Core Tools
+
+| Tool | Input | Output |
+| --- | --- | --- |
+| `search_codebase` | `query`, optional `intent`, `limit`, `filters`, `includeSnippets` | Ranked results (`file`, `summary`, `score`, `type`, `trend`, `patternWarning`) + `searchQuality` (with `hint` when low confidence) + `preflight` ({ready, reason}). Snippets opt-in. |
+| `get_team_patterns` | optional `category` | Pattern frequencies, trends, golden files, conflicts |
+| `get_component_usage` | `name` (import source) | Files importing the given package/module |
+| `remember` | `type`, `category`, `memory`, `reason` | Persists to `.codebase-context/memory.json` |
+| `get_memory` | optional `category`, `type`, `query`, `limit` | Memories with confidence decay scoring |
+
+### Utility Tools
+
+| Tool | Purpose |
+| --- | --- |
+| `get_codebase_metadata` | Framework, dependencies, project stats |
+| `get_style_guide` | Style rules from project documentation |
+| `detect_circular_dependencies` | Import cycles in the file graph |
+| `refresh_index` | Full or incremental re-index + git memory extraction |
+| `get_indexing_status` | Index state, progress, last stats |
+
+## Retrieval Pipeline
+
+Ordered by execution:
+
+1. **Intent classification** — EXACT_NAME (for symbols), CONCEPTUAL, FLOW, CONFIG, WIRING. Sets keyword/semantic weight ratio.
+2. **Query expansion** — bounded domain term expansion for conceptual queries.
+3. **Dual retrieval** — keyword (Fuse.js) + semantic (local embeddings or OpenAI).
+4. **RRF fusion** — Reciprocal Rank Fusion (k=60) across all retrieval channels.
+5. **Structure-aware boosting** — import centrality, composition root boost, path overlap, definition demotion for action queries.
+6. **Contamination control** — test file filtering for non-test queries.
+7. **File deduplication** — best chunk per file.
+8. **Stage-2 reranking** — cross-encoder (`Xenova/ms-marco-MiniLM-L-6-v2`) triggers when the score between the top files are very close. CPU-only, top-10 bounded.
+9. **Result enrichment** — compact type (`componentType:layer`), pattern momentum (`trend` Rising/Declining only, Stable omitted), `patternWarning`, condensed relationships (`importedByCount`/`hasTests`), related memories (capped to 3), search quality assessment with `hint` when low confidence.
+
+### Defaults
+
+- **Chunk size**: 50 lines, 0 overlap
+- **Reranker trigger**: activates when top-3 results are within 0.08 score of each other
+- **Embedding model**: Granite (`ibm-granite/granite-embedding-30m-english`, 8192 token context) via `@huggingface/transformers` v3
+- **Vector DB**: LanceDB with cosine distance
+
+## Preflight (Edit Intent)
+
+Returned as `preflight` when search `intent` is `edit`, `refactor`, or `migrate`. Also returned for default searches when intelligence is available.
+
+Output: `{ ready: boolean, reason?: string }`
+
+- `ready`: whether evidence is sufficient to proceed with edits
+- `reason`: when `ready` is false, explains why (e.g., "Search quality is low", "Insufficient pattern evidence")
+
+### How `ready` is determined
+
+1. **Evidence triangulation** — scores code match (45%), pattern alignment (30%), and memory support (25%). Needs combined score ≥ 40 to pass.
+2. **Epistemic stress check** — if pattern conflicts, stale memories, or thin evidence are detected, `ready` is set to false with an abstain signal.
+3. **Search quality gate** — if `searchQuality.status` is `low_confidence`, `ready` is forced to false regardless of evidence scores. This prevents the "confidently wrong" problem where evidence counts look good but retrieval quality is poor.
+
+### Internal analysis (not in output, used to compute `ready`)
+
+- Risk level from circular deps + impact breadth + failure memories
+- Preferred/avoid patterns from team pattern analysis
+- Golden files by pattern density
+- Impact candidates from import graph
+- Failure warnings from related memories
+- Pattern conflicts when two patterns in the same category are both > 20% adoption
+
+## Memory System
+
+- 4 types: `convention`, `decision`, `gotcha`, `failure`
+- Confidence decay: conventions never decay, decisions 180-day half-life, gotchas/failures 90-day half-life
+- Stale threshold: memories below 30% confidence are flagged
+- Git auto-extraction: conventional commits from last 90 days
+- Surface locations: `search_codebase` results (as `relatedMemories`), `get_team_patterns` responses, preflight analysis
+
+## Indexing
+
+- Initial: full scan → chunking (50 lines, 0 overlap) → embedding → vector DB (LanceDB) + keyword index (Fuse.js)
+- Incremental: SHA-256 manifest diffing, selective embed/delete, full intelligence regeneration
+- Auto-heal: corrupted index triggers automatic full re-index on next search
+- Storage: `.codebase-context/` directory (memory.json + generated files)
+
+## Analyzers
+
+- **Angular**: signals, standalone components, control flow syntax, lifecycle hooks, DI patterns, component metadata
+- **Generic**: 30+ languages — TypeScript, JavaScript, Python, Java, Kotlin, C/C++, C#, Go, Rust, PHP, Ruby, Swift, Scala, Shell, config/markup formats