codebase-cli 2.0.0-pre.1 → 2.0.0-pre.3

package/dist/config/store.js

@@ -0,0 +1,125 @@
+import { existsSync, readFileSync } from "node:fs";
+import { homedir } from "node:os";
+import { join } from "node:path";
+import { EMPTY_CONFIG } from "./types.js";
+/**
+ * Layered config loader. Reads three files in priority order (later
+ * overrides earlier) and returns one merged Config:
+ *
+ *   1. ~/.codebase/config.json          — user defaults
+ *   2. <cwd>/.codebase/config.json      — project (committed)
+ *   3. ~/.codebase/config.local.json    — local overrides (gitignored)
+ *
+ * Merge semantics: object keys deep-merge. Arrays inside known
+ * additive keys (currently `permissions.allow` and `permissions.deny`)
+ * are concatenated and de-duplicated; arrays elsewhere are replaced.
+ *
+ * Missing files are silently empty. Malformed JSON throws ConfigError
+ * with the offending path so the user can fix it (we don't want to
+ * silently ignore typos in their settings).
+ */
+export class ConfigStore {
+    userPath;
+    projectPath;
+    localPath;
+    cached = null;
+    constructor(options = {}) {
+        const home = options.home ?? homedir();
+        const cwd = options.cwd ?? process.cwd();
+        this.userPath = join(home, ".codebase", "config.json");
+        this.projectPath = join(cwd, ".codebase", "config.json");
+        this.localPath = join(home, ".codebase", "config.local.json");
+    }
+    /** Resolved layered paths, in merge order (low → high priority). */
+    get sources() {
+        return [this.userPath, this.projectPath, this.localPath];
+    }
+    /** Force re-read on next load(). */
+    invalidate() {
+        this.cached = null;
+    }
+    load() {
+        if (this.cached)
+            return this.cached;
+        let merged = { ...EMPTY_CONFIG };
+        for (const path of this.sources) {
+            const layer = readLayer(path);
+            if (layer)
+                merged = mergeConfig(merged, layer);
+        }
+        this.cached = merged;
+        return merged;
+    }
+    /** Convenience: get the resolved permission allow patterns. */
+    allowPatterns() {
+        return this.load().permissions?.allow ?? [];
+    }
+    /** Convenience: get the resolved permission deny patterns. */
+    denyPatterns() {
+        return this.load().permissions?.deny ?? [];
+    }
+}
+export class ConfigError extends Error {
+    path;
+    constructor(message, path) {
+        super(message);
+        this.path = path;
+        this.name = "ConfigError";
+    }
+}
+function readLayer(path) {
+    if (!existsSync(path))
+        return null;
+    let raw;
+    try {
+        raw = readFileSync(path, "utf8");
+    }
+    catch {
+        return null;
+    }
+    let parsed;
+    try {
+        parsed = JSON.parse(raw);
+    }
+    catch (err) {
+        throw new ConfigError(`could not parse ${path} as JSON: ${err instanceof Error ? err.message : String(err)}`, path);
+    }
+    if (!parsed || typeof parsed !== "object" || Array.isArray(parsed)) {
+        throw new ConfigError(`${path} must contain a JSON object at the top level`, path);
+    }
+    return parsed;
+}
+/**
+ * Deep-merge two Configs. The right operand wins for scalars and
+ * non-array fields. For the additive arrays under `permissions`,
+ * concatenate + de-duplicate so users can layer rules without losing
+ * earlier-layer entries.
+ */
+export function mergeConfig(base, overlay) {
+    const out = { ...base };
+    for (const [key, value] of Object.entries(overlay)) {
+        if (key === "permissions" && isObject(value) && isObject(out.permissions)) {
+            out.permissions = mergePermissions(out.permissions, value);
+            continue;
+        }
+        out[key] = value;
+    }
+    return out;
+}
+function mergePermissions(base, overlay) {
+    const merged = { ...base, ...overlay };
+    if (overlay.allow && base.allow) {
+        merged.allow = dedupe([...base.allow, ...overlay.allow]);
+    }
+    if (overlay.deny && base.deny) {
+        merged.deny = dedupe([...base.deny, ...overlay.deny]);
+    }
+    return merged;
+}
+function isObject(v) {
+    return v !== null && typeof v === "object" && !Array.isArray(v);
+}
+function dedupe(arr) {
+    return Array.from(new Set(arr));
+}
+//# sourceMappingURL=store.js.map

package/dist/config/store.js.map

@@ -0,0 +1 @@
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package/dist/config/types.js

@@ -0,0 +1,2 @@
+export const EMPTY_CONFIG = Object.freeze({});
+//# sourceMappingURL=types.js.map

package/dist/config/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/config/types.ts"],"names":[],"mappings":"AA8BA,MAAM,CAAC,MAAM,YAAY,GAAW,MAAM,CAAC,MAAM,CAAC,EAAE,CAAW,CAAC"}

package/dist/headless/run.js

@@ -1,14 +1,37 @@
 import { createAgent } from "../agent/agent.js";
 import { ConfigError } from "../agent/config.js";
+const EMPTY_USAGE = {
+    input: 0,
+    output: 0,
+    cacheRead: 0,
+    cacheWrite: 0,
+    totalTokens: 0,
+    cost: { input: 0, output: 0, cacheRead: 0, cacheWrite: 0, total: 0 },
+};
 /**
- * Run a single prompt without the TUI: stream assistant text to stdout,
- * tool activity to stderr (for diagnostic visibility without polluting
- * piped output), exit on agent_end. Designed for CI / scripting use:
- * `codebase run "summarize this repo" > out.md`.
+ * Run a single prompt without the TUI:
+ *
+ *   • text          (default) — assistant text to stdout, tool
+ *                    activity to stderr, plain text. Pipe-friendly:
+ *                    `codebase run "…" > out.md`.
+ *   • stream-json   — every AgentEvent as a JSONL line on stdout, in
+ *                    real time. Suitable for an upstream consumer
+ *                    (CI, IDE integration) that wants progress events.
+ *   • json          — buffer everything; on completion emit ONE JSON
+ *                    object with the final transcript + usage + exit
+ *                    metadata. Suitable for one-shot CI calls that
+ *                    just want the final answer + cost.
+ *
+ * In stream-json/json modes errors land in stdout as a structured
+ * event with `type: "error"` so consumers don't have to merge
+ * stdout+stderr. Setup errors (e.g. ConfigError before the loop
+ * starts) still go to stderr because they predate the JSON
+ * envelope.
  */
 export async function runHeadless(opts) {
     const out = opts.stdout ?? ((c) => process.stdout.write(c));
     const err = opts.stderr ?? ((c) => process.stderr.write(c));
+    const format = opts.outputFormat ?? "text";
     let bundle;
     try {
         bundle = createAgent({ resume: opts.resume });
@@ -18,15 +41,114 @@ export async function runHeadless(opts) {
         err(`error: ${msg}\n`);
         return 1;
     }
-    let lastStreamLen = 0;
+    const startedAt = Date.now();
     let aborted = false;
     let errored = false;
+    let errorMessage;
+    let totalUsage = { ...EMPTY_USAGE, cost: { ...EMPTY_USAGE.cost } };
+    // Always tap the event stream for usage accumulation, regardless of
+    // output format — pi-agent-core surfaces per-turn usage on
+    // message_end events; the JSON output reports the running total.
+    const usageUnsub = bundle.subscribe((event) => {
+        if (event.type !== "message_end")
+            return;
+        const candidate = event.message.usage;
+        if (candidate)
+            totalUsage = mergeUsage(totalUsage, candidate);
+    });
     const onSigInt = () => {
         aborted = true;
         bundle.agent.abort();
     };
     process.on("SIGINT", onSigInt);
-    const unsubscribe = bundle.subscribe((event) => {
+    let unsubscribe;
+    if (format === "stream-json") {
+        unsubscribe = subscribeStreamJson(bundle, out);
+    }
+    else if (format === "json") {
+        unsubscribe = () => {
+            // JSON mode buffers via the agent's own state.messages; the
+            // subscribe handler is a no-op so we don't spam stderr.
+        };
+    }
+    else {
+        unsubscribe = subscribeText(bundle, out, err);
+    }
+    try {
+        await bundle.agent.prompt(opts.prompt);
+    }
+    catch (e) {
+        errored = true;
+        errorMessage = e instanceof Error ? e.message : String(e);
+        if (format === "stream-json") {
+            out(`${JSON.stringify({ type: "error", error: errorMessage, ts: Date.now() })}\n`);
+        }
+        else if (format !== "json") {
+            err(`agent error: ${errorMessage}\n`);
+        }
+    }
+    finally {
+        unsubscribe();
+        usageUnsub();
+        process.off("SIGINT", onSigInt);
+    }
+    const exitCode = aborted ? 130 : errored ? 1 : 0;
+    if (format === "json") {
+        const payload = buildJsonResult({
+            ok: !errored && !aborted,
+            exitCode,
+            error: errorMessage,
+            messages: bundle.agent.state.messages,
+            usage: totalUsage,
+            model: { provider: bundle.model.provider, id: bundle.model.id, name: bundle.model.name },
+            source: bundle.source,
+            durationMs: Date.now() - startedAt,
+        });
+        out(`${JSON.stringify(payload)}\n`);
+    }
+    return exitCode;
+}
+function mergeUsage(a, b) {
+    return {
+        input: a.input + b.input,
+        output: a.output + b.output,
+        cacheRead: a.cacheRead + b.cacheRead,
+        cacheWrite: a.cacheWrite + b.cacheWrite,
+        totalTokens: a.totalTokens + b.totalTokens,
+        cost: {
+            input: a.cost.input + b.cost.input,
+            output: a.cost.output + b.cost.output,
+            cacheRead: a.cost.cacheRead + b.cost.cacheRead,
+            cacheWrite: a.cost.cacheWrite + b.cost.cacheWrite,
+            total: a.cost.total + b.cost.total,
+        },
+    };
+}
+function buildJsonResult(input) {
+    const lastAssistant = [...input.messages].reverse().find((m) => m.role === "assistant");
+    return {
+        ok: input.ok,
+        exitCode: input.exitCode,
+        ...(input.error ? { error: input.error } : {}),
+        model: input.model,
+        source: input.source,
+        durationMs: input.durationMs,
+        usage: input.usage,
+        messageCount: input.messages.length,
+        finalText: lastAssistant ? extractText(lastAssistant) : "",
+        messages: input.messages,
+    };
+}
+function subscribeStreamJson(bundle, out) {
+    return bundle.subscribe((event) => {
+        // One AgentEvent per line. Inject a timestamp so consumers can
+        // reason about latency without re-deriving from clock skew.
+        out(`${JSON.stringify({ ...event, ts: Date.now() })}\n`);
+    });
+}
+function subscribeText(bundle, out, err) {
+    let lastStreamLen = 0;
+    return bundle.subscribe((event) => {
         switch (event.type) {
             case "tool_execution_start":
                 err(`[${event.toolName}…]\n`);
@@ -59,20 +181,6 @@ export async function runHeadless(opts) {
                 return;
         }
     });
-    try {
-        await bundle.agent.prompt(opts.prompt);
-    }
-    catch (e) {
-        errored = true;
-        err(`agent error: ${e instanceof Error ? e.message : String(e)}\n`);
-    }
-    finally {
-        unsubscribe();
-        process.off("SIGINT", onSigInt);
-    }
-    if (aborted)
-        return 130;
-    return errored ? 1 : 0;
 }
 function extractText(message) {
     if (typeof message.content === "string")

package/dist/headless/run.js.map

@@ -1 +1 @@
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package/dist/permissions/store.js

@@ -1,4 +1,80 @@
 import { shellNeedsPermission } from "../tools/permission.js";
+/**
+ * Convert a permission pattern's arg-glob portion into a regex.
+ * `*` → `.*`, `?` → `.`, everything else escaped. Anchored.
+ */
+function compileGlob(glob) {
+    const escaped = glob
+        .replace(/[.+^${}()|[\]\\]/g, "\\$&")
+        .replace(/\*/g, ".*")
+        .replace(/\?/g, ".");
+    return new RegExp(`^${escaped}$`);
+}
+/**
+ * Pull the "primary string arg" from a tool-call args object. This
+ * is the value users typically want to glob against — the shell
+ * command, the file path, the URL, etc. Falls back to the JSON
+ * stringification so unknown tools still match in some way.
+ */
+function primaryArgString(toolName, args) {
+    const a = (args ?? {});
+    const pick = (k) => (typeof a[k] === "string" ? a[k] : "");
+    switch (toolName) {
+        case "shell":
+            return pick("command") || pick("cmd");
+        case "read_file":
+        case "write_file":
+        case "edit_file":
+        case "multi_edit":
+        case "notebook_edit":
+            return pick("path") || pick("file_path");
+        case "list_files":
+            return pick("path");
+        case "glob":
+        case "grep":
+            return pick("pattern");
+        case "web_fetch":
+            return pick("url");
+        case "web_search":
+            return pick("query");
+        default:
+            try {
+                return JSON.stringify(args);
+            }
+            catch {
+                return "";
+            }
+    }
+}
+/**
+ * Compile a config-supplied list of `tool` or `tool:glob` patterns.
+ * Returns a matcher closure; the closure returns true when the tool
+ * call matches any pattern in the list.
+ */
+function compileMatcher(patterns) {
+    if (patterns.length === 0)
+        return () => false;
+    const compiled = patterns.map((pattern) => {
+        const colonIdx = pattern.indexOf(":");
+        if (colonIdx < 0) {
+            return { tool: pattern, regex: null };
+        }
+        const tool = pattern.slice(0, colonIdx);
+        const glob = pattern.slice(colonIdx + 1);
+        return { tool, regex: compileGlob(glob) };
+    });
+    return (toolName, args) => {
+        for (const { tool, regex } of compiled) {
+            if (tool !== toolName)
+                continue;
+            if (!regex)
+                return true;
+            if (regex.test(primaryArgString(toolName, args)))
+                return true;
+        }
+        return false;
+    };
+}
 /**
  * Tools that never need a permission prompt. The full read-only set
  * (audit-flagged "read-only allowlist" from permission.go) plus the task
@@ -26,14 +102,26 @@ const ALWAYS_ALLOWED = new Set([
     // Memory tools are user-context, not destructive code edits — auto-allow.
     "save_memory",
     "read_memory",
+    // `config` is read-only.
+    "config",
 ]);
 /**
  * Per-agent-instance permission store. Used by the agent's
  * beforeToolCall hook to decide whether to allow, prompt, or block.
  *
- * Trust state is in-memory and session-scoped — restarting the CLI
- * resets all per-tool/global trust. Persisting trust across sessions
- * lands in Phase 6 (config) so users can choose what to remember.
+ * Decision order, highest priority first:
+ *   1. config-supplied deny patterns       → block immediately
+ *   2. session-scoped "trust-all" response → allow
+ *   3. session-scoped "trust-tool" response → allow for that tool
+ *   4. built-in ALWAYS_ALLOWED read-only set → allow
+ *   5. config-supplied allow patterns      → allow
+ *   6. shell-/git-branch-specific read heuristics → allow
+ *   7. otherwise → prompt the user
+ *
+ * Trust state from interactive responses is in-memory (session-only).
+ * Persisting it across sessions is what the config layer is for —
+ * users can promote a session-scoped trust to a config entry by
+ * editing ~/.codebase/config.json.
  */
 export class PermissionStore {
     trustAll = false;
@@ -41,9 +129,19 @@ export class PermissionStore {
     queue = [];
     listeners = new Set();
     counter = 0;
+    matchAllow;
+    matchDeny;
+    constructor(options = {}) {
+        this.matchAllow = compileMatcher(options.allowPatterns ?? []);
+        this.matchDeny = compileMatcher(options.denyPatterns ?? []);
+    }
     async evaluate(toolName, args) {
+        if (this.matchDeny(toolName, args))
+            return "block";
         if (this.shouldAutoAllow(toolName, args))
             return "allow";
+        if (this.matchAllow(toolName, args))
+            return "allow";
         return new Promise((resolve) => {
             const request = {
                 id: `perm-${++this.counter}`,

package/dist/permissions/store.js.map

@@ -1 +1 @@
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package/dist/tools/config.js

@@ -0,0 +1,74 @@
+import { Type } from "typebox";
+import { ConfigStore } from "../config/store.js";
+const Params = Type.Object({
+    path: Type.Optional(Type.String({
+        description: "Dotted path to read a single value (e.g. `permissions.allow`). Omit to return the whole merged config.",
+    })),
+});
+const DESCRIPTION = `Read the merged codebase-cli config (user defaults + project overrides + local overrides).
+
+The config has three layers, merged later-wins for scalars, additive-merge for permission patterns:
+  1. ~/.codebase/config.json          — user defaults
+  2. <cwd>/.codebase/config.json      — project, committed
+  3. ~/.codebase/config.local.json    — local override, gitignored
+
+Useful for: checking which permission allowlists are active, reading user-set theme/model preferences, debugging why a tool was/wasn't auto-allowed.
+
+This tool is read-only. To change config, edit the JSON files directly or ask the user to run a slash command.`;
+export function createConfig(ctx) {
+    return {
+        name: "config",
+        label: "Config",
+        description: DESCRIPTION,
+        parameters: Params,
+        executionMode: "parallel",
+        execute: async (_toolCallId, params) => {
+            const store = new ConfigStore({ cwd: ctx.cwd });
+            const merged = store.load();
+            const value = params.path ? readPath(merged, params.path) : merged;
+            const formatted = JSON.stringify(value, null, 2);
+            return {
+                content: [
+                    {
+                        type: "text",
+                        text: params.path
+                            ? `${params.path}:\n${formatted}`
+                            : `merged config (sources: ${store.sources.join(", ")}):\n${formatted}`,
+                    },
+                ],
+                details: {
+                    path: params.path,
+                    sources: store.sources,
+                    value,
+                },
+            };
+        },
+    };
+}
+/**
+ * Resolve a dotted path against an object. Missing intermediate keys
+ * yield `undefined`. Array indices via numeric segments are supported
+ * (`messages.3.content`).
+ */
+function readPath(obj, path) {
+    const segments = path.split(".").filter((s) => s.length > 0);
+    let current = obj;
+    for (const seg of segments) {
+        if (current === null || current === undefined)
+            return undefined;
+        if (Array.isArray(current)) {
+            const idx = Number.parseInt(seg, 10);
+            if (Number.isNaN(idx))
+                return undefined;
+            current = current[idx];
+            continue;
+        }
+        if (typeof current === "object") {
+            current = current[seg];
+            continue;
+        }
+        return undefined;
+    }
+    return current;
+}
+//# sourceMappingURL=config.js.map

package/dist/tools/config.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/tools/config.ts"],"names":[],"mappings":"AACA,OAAO,EAAe,IAAI,EAAE,MAAM,SAAS,CAAC;AAC5C,OAAO,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAGjD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC;IAC1B,IAAI,EAAE,IAAI,CAAC,QAAQ,CAClB,IAAI,CAAC,MAAM,CAAC;QACX,WAAW,EACV,wGAAwG;KACzG,CAAC,CACF;CACD,CAAC,CAAC;AAUH,MAAM,WAAW,GAAG;;;;;;;;;+GAS2F,CAAC;AAEhH,MAAM,UAAU,YAAY,CAAC,GAAgB;IAC5C,OAAO;QACN,IAAI,EAAE,QAAQ;QACd,KAAK,EAAE,QAAQ;QACf,WAAW,EAAE,WAAW;QACxB,UAAU,EAAE,MAAM;QAClB,aAAa,EAAE,UAAU;QACzB,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,EAAE;YACtC,MAAM,KAAK,GAAG,IAAI,WAAW,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC;YAChD,MAAM,MAAM,GAAG,KAAK,CAAC,IAAI,EAAE,CAAC;YAC5B,MAAM,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;YACnE,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;YACjD,OAAO;gBACN,OAAO,EAAE;oBACR;wBACC,IAAI,EAAE,MAAM;wBACZ,IAAI,EAAE,MAAM,CAAC,IAAI;4BAChB,CAAC,CAAC,GAAG,MAAM,CAAC,IAAI,MAAM,SAAS,EAAE;4BACjC,CAAC,CAAC,2BAA2B,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,SAAS,EAAE;qBACxE;iBACD;gBACD,OAAO,EAAE;oBACR,IAAI,EAAE,MAAM,CAAC,IAAI;oBACjB,OAAO,EAAE,KAAK,CAAC,OAAO;oBACtB,KAAK;iBACL;aACD,CAAC;QACH,CAAC;KACD,CAAC;AACH,CAAC;AAED;;;;GAIG;AACH,SAAS,QAAQ,CAAC,GAAY,EAAE,IAAY;IAC3C,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAC7D,IAAI,OAAO,GAAY,GAAG,CAAC;IAC3B,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;QAC5B,IAAI,OAAO,KAAK,IAAI,IAAI,OAAO,KAAK,SAAS;YAAE,OAAO,SAAS,CAAC;QAChE,IAAI,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;YAC5B,MAAM,GAAG,GAAG,MAAM,CAAC,QAAQ,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;YACrC,IAAI,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC;gBAAE,OAAO,SAAS,CAAC;YACxC,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;YACvB,SAAS;QACV,CAAC;QACD,IAAI,OAAO,OAAO,KAAK,QAAQ,EAAE,CAAC;YACjC,OAAO,GAAI,OAAmC,CAAC,GAAG,CAAC,CAAC;YACpD,SAAS;QACV,CAAC;QACD,OAAO,SAAS,CAAC;IAClB,CAAC;IACD,OAAO,OAAO,CAAC;AAChB,CAAC"}

package/dist/tools/dispatch-agent.js

@@ -58,6 +58,15 @@ export function createDispatchAgent(ctx) {
             const toolsUsed = [];
             let lastAssistantText = "";
             let usage = EMPTY_USAGE;
+            let success = false;
+            await ctx.hooks?.dispatch("SubagentStart", {
+                event: "SubagentStart",
+                workingDir: ctx.cwd,
+                // dispatch_agent currently only ships a read-only subagent type;
+                // when planAgent / generalAgent variants land we'll surface them.
+                subagentType: "read-only",
+                subagentPrompt: params.task,
+            }, parentSignal);
             const subagent = ctx.spawnSubagent({
                 systemPrompt: subagentSystemPrompt(params.task, ctx.cwd),
                 tools: buildSubagentTools(ctx),
@@ -90,6 +99,7 @@ export function createDispatchAgent(ctx) {
             });
             try {
                 await subagent.prompt(params.task);
+                success = true;
             }
             catch (err) {
                 if (parentSignal?.aborted)
@@ -103,6 +113,12 @@ export function createDispatchAgent(ctx) {
             finally {
                 unsubscribe();
                 parentSignal?.removeEventListener("abort", onParentAbort);
+                await ctx.hooks?.dispatch("SubagentStop", {
+                    event: "SubagentStop",
+                    workingDir: ctx.cwd,
+                    subagentType: "read-only",
+                    subagentSuccess: success,
+                }, parentSignal);
             }
             const finalText = lastAssistantText || "(subagent completed without producing a summary)";
             const summary = maxTurnsReached

package/dist/tools/dispatch-agent.js.map

@@ -1 +1 @@
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