codealmanac 0.2.6 → 0.2.7

package/prompts/base/purpose.md

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+# Wiki Purpose
+
+CodeAlmanac is cultivated project memory.
+
+The wiki is a deep-research cache over the project. It preserves the
+understanding that an expert agent builds after reading, tracing, comparing,
+and connecting raw inputs. Future agents should start from this reusable
+understanding instead of repeatedly reorienting from zero.
+
+The codebase is the anchor, not the boundary. The wiki may absorb code,
+sessions, docs, research, market reads, product thinking, incidents,
+conversations, external systems, laws, papers, team practices, and anything
+else that materially shapes work on the project.
+
+The page is not the raw input. The input is material to be distilled into the
+project's memory.
+
+## The Core Test
+
+A wiki change is valuable when it preserves durable, reusable project
+understanding that would be costly, useful, or risky to reconstruct later.
+
+That includes:
+
+- how the codebase works
+- what named entities mean in this project
+- how subsystems, files, commands, and external systems interact
+- what conclusions were drawn from reading docs or doing research
+- what the project currently believes about product, users, market, or design
+- what decisions, constraints, risks, and incidents should shape future work
+- what is intentionally not used or not done
+
+Do not reduce the wiki to a bug-prevention notebook. Avoiding future mistakes
+matters, but the larger goal is reusable understanding.
+
+## Project-World Map
+
+Pages may cover things outside the repo when they matter to the project.
+`stripe.md`, `postgres.md`, `claude-agent-sdk.md`,
+`anthropic-prompt-caching.md`, or `agent-tools-market.md` can all be valid
+pages.
+
+Do not copy the world. Preserve the useful understanding produced by engaging
+with the world.
+
+For an external thing, write about its role in this project:
+
+- what we use
+- what we do not use
+- what assumptions we rely on
+- what versions, APIs, contracts, or docs matter
+- what conclusions we reached
+- what pages, decisions, code, or project beliefs it connects to
+
+Pure reference material is allowed when it is reusable project memory. It still
+needs to be distilled, grounded, and connected to the project graph.
+
+## Synthesis Over Logs
+
+Prefer evolving synthesis pages over chronological logs.
+
+If an input says something about market sentiment, pricing, product
+positioning, user trust, an external dependency, or an internal subsystem,
+fold it into the durable page that tracks that idea.
+
+Create a temporal page only when the time, event, or snapshot is itself part of
+the meaning. A dated market read, incident, migration, API breaking change, or
+launch-period observation may deserve a temporal page. If you create one, also
+connect it to the synthesis page or hub it informs.
+
+The wiki is not a diary, transcript store, or progress log. It is cultivated
+project memory.
+
+## Inputs Are Starting Points
+
+Build starts from the repo corpus.
+
+Absorb starts from a concrete input: a session, file, folder, diff, document,
+research note, market read, conversation, or other context.
+
+Garden starts from the current wiki graph.
+
+In every case, the starting point is not a boundary. Inspect related code,
+wiki pages, docs, tests, history, or sources when useful. Keep the scope
+proportional to what the input reveals.

package/prompts/base/syntax.md

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+# Page Syntax And Writing Conventions
+
+Write markdown pages directly under `.almanac/pages/`. Use kebab-case slugs.
+The filename is the stable page identity.
+
+Use natural names. Prefer `stripe.md`, `postgres.md`,
+`claude-agent-sdk.md`, `agent-tools-market.md`, and
+`pricing-sensitivity.md` over genre-prefixed names such as
+`dependency-stripe.md` or `research-agent-tools-market.md`.
+
+## Frontmatter
+
+Use YAML frontmatter when it helps indexing and future agents.
+
+Common fields:
+
+```yaml
+---
+title: Human Readable Title
+topics: [topic-one, topic-two]
+files:
+  - src/path/to/file.ts
+sources:
+  - https://example.com/docs
+status: active
+verified: 2026-05-10
+external_version: "api-or-doc-version-if-relevant"
+supersedes: old-page-slug
+superseded_by: new-page-slug
+archived_at: 2026-05-10
+---
+```
+
+`title`, `topics`, `files`, `archived_at`, `supersedes`, and
+`superseded_by` are understood by current tooling. Other fields are allowed as
+durable prompt-level conventions and future index inputs.
+
+Use `files:` for repo files and folders that support the page. Use `sources:`
+for external docs, papers, URLs, transcripts, notes, market reads, research
+inputs, commits, or other non-repo material that supports the page.
+
+Do not add fields mechanically. Frontmatter should make the page more
+retrievable, grounded, or maintainable.
+
+## Wikilinks
+
+Use one `[[...]]` syntax:
+
+- `[[page-slug]]` links to another wiki page.
+- `[[src/indexer/schema.ts]]` references a repo file.
+- `[[src/indexer/]]` references a repo folder.
+- `[[other-wiki:page-slug]]` references another wiki.
+
+Disambiguation is content-based:
+
+- contains `:` before `/` means cross-wiki
+- contains `/` means file or folder
+- trailing `/` means folder
+- otherwise it is a page slug
+
+Link the first meaningful mention of a related page in a section. Do not link
+every repeated word. A page with no inbound or outbound links is suspect.
+
+## Grounding
+
+Ground non-obvious claims in code, tests, docs, sources, commits, prior wiki
+pages, or explicit user-provided context.
+
+Do not pretend uncertainty is fact. If a claim matters and cannot be grounded,
+either omit it or mark it as an open question.
+
+For external docs or research, cite the source and preserve the conclusion that
+matters to this project. Do not copy long external passages into the wiki.
+
+For code claims, prefer exact file references in `files:` and links in prose.
+For behavior claims, inspect tests when available.
+
+## Page Shape
+
+Start with a lead. The lead should stand alone: a future agent should know what
+the page is about, why it exists, and whether to keep reading.
+
+After the lead, use sections based on the page's job. Common sections include:
+
+- What it is in this project
+- Where it lives
+- How it works
+- What we use
+- What we do not use
+- Contracts and assumptions
+- Related flows
+- Current synthesis
+- Open questions
+- Verification
+- Related pages
+
+Use prose for explanation. Use bullets for real lists. Use tables only for
+structured comparison.
+
+## Style
+
+Be direct, factual, and dense. Write for future coding agents.
+
+Avoid:
+
+- generic library tutorials
+- vague claims
+- marketing prose
+- unsupported rationale
+- transcript language
+- "this file contains" summaries
+- conclusions that do not connect to future work
+
+Every edit should make the graph easier to understand, navigate, or trust.

package/prompts/operations/absorb.md

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+# Absorb Operation
+
+You are improving an existing CodeAlmanac wiki from a starting context.
+
+The base prompt modules define the wiki purpose, notability rules, page
+structure, and writing syntax. Follow them.
+
+The input may be a coding session, file, folder, diff, document, docs read,
+research note, market read, product conversation, incident, user feedback, or
+other concrete pointer. Treat that input as raw material, not as the output.
+
+## Algorithm
+
+1. Understand the starting context and what kind of input it is.
+2. Extract candidate durable learnings, conclusions, entities, changed
+   assumptions, project-world connections, risks, and synthesis updates.
+3. Inspect the current wiki for the right home before creating pages.
+4. Verify important claims against code, tests, docs, sources, git history, or
+   the provided context when useful.
+5. Prefer updating existing evolving pages over creating new pages.
+6. Create a new page only when the input reveals a durable concept that needs
+   its own anchor.
+7. Avoid temporal pages unless the date, event, or snapshot is part of the
+   meaning. If you create a temporal page, also update or link the synthesis
+   page or hub it informs.
+8. Update topics and links so the new understanding joins the graph.
+9. No-op when the input does not improve durable project memory.
+
+Do not summarize sessions, files, docs, market reads, or conversations. Distill
+their reusable project meaning.
+
+Keep changes proportional to the input. Broad restructuring is valid when the
+input reveals a real graph problem, but do not churn unrelated pages.
+
+## Helper Agents
+
+Most Absorb runs should be single-agent. If the input spans multiple
+independent areas, requires external verification, or is large enough that
+parallel investigation will materially improve quality, use helper/subagents
+for bounded research or draft fragments.
+
+The main agent owns final integration, page boundaries, topics, links, hubs,
+and final prose.

package/prompts/operations/build.md

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+# Build Operation
+
+You are building the first substantial CodeAlmanac wiki for this repository.
+
+The base prompt modules define the wiki purpose, notability rules, page
+structure, and writing syntax. Follow them.
+
+Your job is to perform a deep first construction pass. Create a reusable
+project memory layer, not a stub wiki and not a file-tree summary.
+
+## Algorithm
+
+1. Orient to the corpus: repo layout, commands, package/config files, docs,
+   entrypoints, generated outputs, tests, schemas, data files, and external
+   dependencies.
+2. Build a working map of the repo from multiple angles: entities,
+   subsystems, flows, contracts, data models, operations, external systems,
+   product/project concepts, and dense clusters.
+3. Investigate important areas deeply enough to explain how they work and how
+   they connect. Tests are often the clearest source of intended behavior.
+4. Compare code against existing docs and research. Do not copy docs; preserve
+   the applied conclusions and project-specific meaning.
+5. Identify page candidates by future value. Ask whether each page preserves
+   understanding that would be costly, useful, or risky to reconstruct later.
+6. Design the initial graph: pages, topics, links, and any local hubs.
+7. Write detailed, grounded pages directly under `.almanac/pages/`.
+8. Re-read the wiki as a future agent. Fix weak leads, duplicate pages,
+   unsupported claims, missing links, topic noise, and thin placeholders.
+
+Be thorough. Create many pages when many pages are justified. Do not stay tiny
+to be safe. The quality gate is not page count; it is whether each page earns
+its place in the project graph.
+
+## Helper Agents
+
+If the provider supports helper/subagents and the repo is broad enough, use
+them for bounded investigation or draft fragments. Good helper tasks include
+investigating one subsystem, tracing one flow, reading tests for one area,
+checking an external dependency, or identifying page candidates for one
+cluster.
+
+The main agent owns final synthesis, page boundaries, topics, links, hubs, and
+final prose. Do not let helpers independently create disconnected final wiki
+structure.
+
+## Output Standard
+
+The output is a coherent `.almanac/` wiki. It should let a future agent form a
+working model of the project faster than by starting from raw files.

package/prompts/operations/garden.md

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+# Garden Operation
+
+You are improving an existing CodeAlmanac wiki as a whole graph.
+
+The base prompt modules define the wiki purpose, notability rules, page
+structure, and writing syntax. Follow them.
+
+Garden is cultivation. The goal is not to add activity; the goal is to make the
+project memory more coherent, navigable, current, and trustworthy.
+
+## Algorithm
+
+1. Inspect pages, topics, links, hubs, archived pages, supersession chains,
+   referenced files, and cited sources where useful.
+2. Find graph problems: duplicate pages, thin placeholders, stale claims,
+   missing anchors, missing links, bloated pages, confusing topics, broken
+   references, unsupported claims, disconnected temporal notes, and clusters
+   that need hubs.
+3. Prefer synthesis over logs. Fold date-stamped fragments into evolving pages
+   when chronology is not itself important.
+4. Merge overlapping pages. Split pages that now contain multiple independent
+   concepts. Archive or supersede stale pages when history still matters.
+5. Improve topic neighborhoods. Prefer stable cluster names over bookkeeping
+   labels.
+6. Create or revise hubs when a dense cluster needs reading order and
+   interpretation.
+7. Re-read edited areas as a future agent. Verify that leads, links,
+   frontmatter, and page boundaries make the graph easier to use.
+
+You may create, update, rewrite, merge, split, archive, supersede, retopic,
+relink, or create hub/index pages when that improves the wiki. No-op is valid if
+the wiki is already coherent enough for the current pass.
+
+Do not churn the wiki just to show activity. Do not rewrite unrelated pages for
+style. Make broad changes only when the graph shape justifies them.
+
+## Helper Agents
+
+If the provider supports helper/subagents and the wiki is broad enough, use
+them for bounded audits: duplicate detection, stale reference checks, topic
+cluster review, hub candidates, source grounding, or one dense area of the
+graph.
+
+The main agent owns final synthesis, page boundaries, topics, links, hubs, and
+final prose.
+
+## Output Standard
+
+The output is a more coherent `.almanac/` wiki. Every edit should make the
+project memory easier for a future coding agent to understand, navigate, or
+trust.

package/COMMERCIAL.md

@@ -1,9 +0,0 @@
-# Commercial License
-
-codealmanac is free for noncommercial use under the
-[PolyForm Noncommercial License 1.0.0](./LICENSE).
-
-Commercial use requires a separate paid commercial license from the copyright
-holder.
-
-To request a commercial license, contact Rohan Sheth.

package/dist/chunk-3E7JNMTZ.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/update/config.ts"],"sourcesContent":["import { existsSync } from \"node:fs\";\nimport { mkdir, readFile, rename, writeFile } from \"node:fs/promises\";\nimport { dirname, join } from \"node:path\";\n\nimport {\n  findNearestAlmanacDir,\n  getGlobalAlmanacDir,\n  getRepoAlmanacDir,\n} from \"../paths.js\";\n\nexport const ALL_AGENT_PROVIDER_IDS = [\"claude\", \"codex\", \"cursor\"] as const;\nexport type AgentProviderId = (typeof ALL_AGENT_PROVIDER_IDS)[number];\nexport const AGENT_PROVIDER_IDS = ALL_AGENT_PROVIDER_IDS;\nexport const DEFAULT_AGENT_PROVIDER_IDS = [\"claude\", \"codex\"] as const;\nexport type EnabledAgentProviderId =\n  (typeof DEFAULT_AGENT_PROVIDER_IDS)[number] | AgentProviderId;\n\nexport function isCursorEnabled(env: NodeJS.ProcessEnv = process.env): boolean {\n  return env.CODEALMANAC_ENABLE_CURSOR === \"1\";\n}\n\nexport function getEnabledAgentProviderIds(\n  env: NodeJS.ProcessEnv = process.env,\n): AgentProviderId[] {\n  return isCursorEnabled(env)\n    ? [...ALL_AGENT_PROVIDER_IDS]\n    : [...DEFAULT_AGENT_PROVIDER_IDS];\n}\n\nexport function isEnabledAgentProviderId(\n  value: string,\n  env: NodeJS.ProcessEnv = process.env,\n): value is AgentProviderId {\n  return getEnabledAgentProviderIds(env).includes(value as AgentProviderId);\n}\n\nexport function formatEnabledAgentProviderList(\n  env: NodeJS.ProcessEnv = process.env,\n): string {\n  return getEnabledAgentProviderIds(env).join(\", \");\n}\n\nexport function disabledAgentProviderMessage(provider: string): string {\n  if (provider === \"cursor\") {\n    return \"cursor support is disabled. Set CODEALMANAC_ENABLE_CURSOR=1 to enable experimental Cursor support.\";\n  }\n  return `${provider} support is disabled.`;\n}\n\nexport function isAgentProviderId(value: string): value is AgentProviderId {\n  return (ALL_AGENT_PROVIDER_IDS as readonly string[]).includes(value);\n}\n\nexport interface AgentConfig {\n  /** Default provider for bootstrap/capture. Default: \"claude\". */\n  default: AgentProviderId;\n  /** Optional per-provider model override. `null` means provider default. */\n  models: Partial<Record<AgentProviderId, string | null>>;\n}\n\n/**\n * `~/.almanac/config.toml` — global, cross-wiki configuration. Legacy\n * `config.json` is read and migrated forward on first normal access.\n *\n * Missing or malformed → defaults. Same tolerance as `UpdateState`:\n * the CLI must not be able to fail because this file drifted.\n */\nexport interface GlobalConfig {\n  /** When `false`, suppress the pre-command update-nag banner. Default: true. */\n  update_notifier: boolean;\n  /** Agent-provider settings for bootstrap/capture. */\n  agent: AgentConfig;\n}\n\nexport function defaultConfig(): GlobalConfig {\n  return {\n    update_notifier: true,\n    agent: {\n      default: \"claude\",\n      models: {\n        claude: null,\n        codex: null,\n        cursor: null,\n      },\n    },\n  };\n}\n\nexport function getConfigPath(): string {\n  return join(getGlobalAlmanacDir(), \"config.toml\");\n}\n\nexport function getLegacyConfigPath(): string {\n  return join(getGlobalAlmanacDir(), \"config.json\");\n}\n\nexport function getProjectConfigPath(cwd: string): string | null {\n  const repoRoot = findNearestAlmanacDir(cwd);\n  return repoRoot === null ? null : join(getRepoAlmanacDir(repoRoot), \"config.toml\");\n}\n\nexport type ConfigOrigin = \"default\" | \"user\" | \"project\";\n\nexport interface ConfigReadOptions {\n  path?: string;\n  cwd?: string;\n}\n\nexport interface ConfigReadResult {\n  config: GlobalConfig;\n  origins: Record<string, ConfigOrigin>;\n  raw: Record<string, unknown>;\n}\n\nexport async function readConfig(\n  input?: string | ConfigReadOptions,\n): Promise<GlobalConfig> {\n  return (await readConfigWithOrigins(input)).config;\n}\n\nexport async function readConfigWithOrigins(\n  input?: string | ConfigReadOptions,\n): Promise<ConfigReadResult> {\n  const opts = normalizeReadOptions(input);\n  if (opts.path !== undefined) {\n    const raw = await readRawConfigObject(opts.path);\n    return {\n      config: normalizeRawConfig(raw),\n      origins: originsFromRaw(raw, \"user\"),\n      raw,\n    };\n  }\n\n  const file = getConfigPath();\n  await migrateLegacyConfigIfNeeded(file);\n  const userRaw = await readRawConfigObject(file);\n  const mergedRaw = cloneJsonObject(userRaw);\n  const origins = originsFromRaw(userRaw, \"user\");\n  const projectPath = opts.cwd !== undefined ? getProjectConfigPath(opts.cwd) : null;\n  if (projectPath !== null) {\n    const projectRaw = await readRawConfigObject(projectPath);\n    applyProjectConfig(mergedRaw, projectRaw);\n    Object.assign(origins, originsFromRaw(projectRaw, \"project\", true));\n  }\n  return {\n    config: normalizeRawConfig(mergedRaw),\n    origins,\n    raw: mergedRaw,\n  };\n}\n\nfunction normalizeReadOptions(\n  input?: string | ConfigReadOptions,\n): ConfigReadOptions {\n  return typeof input === \"string\" ? { path: input } : input ?? {};\n}\n\nasync function migrateLegacyConfigIfNeeded(file: string): Promise<void> {\n  if (existsSync(file)) return;\n  const legacy = getLegacyConfigPath();\n  if (!existsSync(legacy)) return;\n  const raw = await readRawConfigObject(legacy);\n  if (Object.keys(raw).length === 0) return;\n  await writeConfig(normalizeRawConfig(raw), file);\n}\n\nfunction normalizeRawConfig(raw: Record<string, unknown>): GlobalConfig {\n  const defaults = defaultConfig();\n  const rawAgent =\n    raw.agent !== undefined &&\n    raw.agent !== null &&\n    typeof raw.agent === \"object\" &&\n    !Array.isArray(raw.agent)\n      ? (raw.agent as Partial<AgentConfig>)\n      : {};\n  const rawDefault =\n    typeof rawAgent.default === \"string\" &&\n    isAgentProviderId(rawAgent.default)\n      ? rawAgent.default\n      : defaults.agent.default;\n  const rawModels =\n    rawAgent.models !== undefined &&\n    rawAgent.models !== null &&\n    typeof rawAgent.models === \"object\" &&\n    !Array.isArray(rawAgent.models)\n      ? (rawAgent.models as Record<string, unknown>)\n      : {};\n  const models: Partial<Record<AgentProviderId, string | null>> = {\n    ...defaults.agent.models,\n  };\n  for (const id of AGENT_PROVIDER_IDS) {\n    const value = rawModels[id];\n    if (typeof value === \"string\" && value.length > 0) {\n      models[id] = value === \"default\" || value === \"null\" ? null : value;\n    } else if (value === null) {\n      models[id] = null;\n    }\n  }\n  return {\n    update_notifier:\n      typeof raw.update_notifier === \"boolean\"\n        ? raw.update_notifier\n        : defaults.update_notifier,\n    agent: {\n      default: rawDefault,\n      models,\n    },\n  };\n}\n\nfunction applyProjectConfig(\n  target: Record<string, unknown>,\n  projectRaw: Record<string, unknown>,\n): void {\n  const projectAgent =\n    projectRaw.agent !== null &&\n    typeof projectRaw.agent === \"object\" &&\n    !Array.isArray(projectRaw.agent)\n      ? projectRaw.agent as Record<string, unknown>\n      : {};\n  if (Object.keys(projectAgent).length === 0) return;\n  const targetAgent =\n    target.agent !== null &&\n    typeof target.agent === \"object\" &&\n    !Array.isArray(target.agent)\n      ? target.agent as Record<string, unknown>\n      : {};\n  target.agent = targetAgent;\n  if (typeof projectAgent.default === \"string\") {\n    targetAgent.default = projectAgent.default;\n  }\n  const projectModels =\n    projectAgent.models !== null &&\n    typeof projectAgent.models === \"object\" &&\n    !Array.isArray(projectAgent.models)\n      ? projectAgent.models as Record<string, unknown>\n      : {};\n  if (Object.keys(projectModels).length === 0) return;\n  const targetModels =\n    targetAgent.models !== null &&\n    typeof targetAgent.models === \"object\" &&\n    !Array.isArray(targetAgent.models)\n      ? targetAgent.models as Record<string, unknown>\n      : {};\n  targetAgent.models = targetModels;\n  for (const id of AGENT_PROVIDER_IDS) {\n    if (Object.prototype.hasOwnProperty.call(projectModels, id)) {\n      targetModels[id] = projectModels[id];\n    }\n  }\n}\n\nfunction originsFromRaw(\n  raw: Record<string, unknown>,\n  origin: ConfigOrigin,\n  agentOnly = false,\n): Record<string, ConfigOrigin> {\n  const origins: Record<string, ConfigOrigin> = {};\n  if (!agentOnly && Object.prototype.hasOwnProperty.call(raw, \"update_notifier\")) {\n    origins.update_notifier = origin;\n  }\n  const agent =\n    raw.agent !== null &&\n    typeof raw.agent === \"object\" &&\n    !Array.isArray(raw.agent)\n      ? raw.agent as Record<string, unknown>\n      : {};\n  if (Object.prototype.hasOwnProperty.call(agent, \"default\")) {\n    origins[\"agent.default\"] = origin;\n  }\n  const models =\n    agent.models !== null &&\n    typeof agent.models === \"object\" &&\n    !Array.isArray(agent.models)\n      ? agent.models as Record<string, unknown>\n      : {};\n  for (const id of AGENT_PROVIDER_IDS) {\n    if (Object.prototype.hasOwnProperty.call(models, id)) {\n      origins[`agent.models.${id}`] = origin;\n    }\n  }\n  return origins;\n}\n\nasync function readSingleConfig(file: string): Promise<GlobalConfig> {\n  let raw: string;\n  try {\n    raw = await readFile(file, \"utf8\");\n  } catch {\n    return defaultConfig();\n  }\n  const trimmed = raw.trim();\n  if (trimmed.length === 0) return defaultConfig();\n  try {\n    return normalizeRawConfig(parseConfigText(trimmed, file));\n  } catch {\n    return defaultConfig();\n  }\n}\n\nexport async function writeConfig(\n  config: GlobalConfig | Partial<GlobalConfig>,\n  path?: string,\n): Promise<void> {\n  const file = path ?? getConfigPath();\n  await mkdir(dirname(file), { recursive: true });\n  const current = await readSingleConfig(file);\n  const existingRaw = await readRawConfigObject(file);\n  const stored = toStoredConfigPatch(config, current, existingRaw);\n  const body = serializeConfig(stored, file);\n  const tmp = `${file}.tmp`;\n  await writeFile(tmp, body, \"utf8\");\n  await rename(tmp, file);\n}\n\nfunction normalizeConfig(config: GlobalConfig | Partial<GlobalConfig>): GlobalConfig {\n  const defaults = defaultConfig();\n  return {\n    update_notifier:\n      typeof config.update_notifier === \"boolean\"\n        ? config.update_notifier\n        : defaults.update_notifier,\n    agent: {\n      default:\n        config.agent !== undefined && isAgentProviderId(config.agent.default)\n          ? config.agent.default\n          : defaults.agent.default,\n      models: {\n        ...defaults.agent.models,\n        ...(config.agent?.models ?? {}),\n      },\n    },\n  };\n}\n\nasync function readRawConfigObject(\n  path: string,\n): Promise<Record<string, unknown>> {\n  try {\n    return parseConfigText(await readFile(path, \"utf8\"), path);\n  } catch {\n    // Fall through to empty.\n  }\n  return {};\n}\n\nexport function parseConfigText(\n  raw: string,\n  path = \"config.toml\",\n): Record<string, unknown> {\n  const trimmed = raw.trim();\n  if (trimmed.length === 0) return {};\n  if (path.endsWith(\".json\") || trimmed.startsWith(\"{\")) {\n    const parsed = JSON.parse(trimmed) as unknown;\n    return parsed !== null && typeof parsed === \"object\" && !Array.isArray(parsed)\n      ? parsed as Record<string, unknown>\n      : {};\n  }\n  return parseTomlConfig(trimmed);\n}\n\nexport function serializeConfig(\n  raw: Record<string, unknown>,\n  path = \"config.toml\",\n): string {\n  return path.endsWith(\".json\")\n    ? `${JSON.stringify(raw, null, 2)}\\n`\n    : serializeTomlConfig(raw);\n}\n\nfunction parseTomlConfig(raw: string): Record<string, unknown> {\n  const result: Record<string, unknown> = {};\n  let section: string[] = [];\n  for (const original of raw.split(/\\r?\\n/)) {\n    const line = stripTomlComment(original).trim();\n    if (line.length === 0) continue;\n    const sectionMatch = line.match(/^\\[([A-Za-z0-9_.-]+)\\]$/);\n    if (sectionMatch !== null) {\n      section = sectionMatch[1]!.split(\".\");\n      continue;\n    }\n    const eq = line.indexOf(\"=\");\n    if (eq === -1) continue;\n    const key = line.slice(0, eq).trim();\n    const value = parseTomlValue(line.slice(eq + 1).trim());\n    setObjectPath(result, [...section, key], value);\n  }\n  return result;\n}\n\nfunction serializeTomlConfig(raw: Record<string, unknown>): string {\n  const lines: string[] = [];\n  if (typeof raw.update_notifier === \"boolean\") {\n    lines.push(`update_notifier = ${raw.update_notifier ? 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package/dist/chunk-DW32TL5W.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/commands/doctor-checks/format.ts","../src/commands/doctor-checks/install.ts","../src/commands/doctor-checks/probes.ts","../src/commands/doctor-checks/agents.ts","../src/commands/doctor-checks/updates.ts","../src/commands/doctor.ts"],"sourcesContent":["import { BLUE, BOLD, DIM, GREEN, RED, RST } from \"../../ansi.js\";\nimport type {\n  AgentDoctorCheck,\n  Check,\n  CheckStatus,\n  DoctorOptions,\n  DoctorReport,\n} from \"./types.js\";\n\nexport function formatReport(\n  report: DoctorReport,\n  options: DoctorOptions,\n): string {\n  const color = options.stdout === undefined && process.stdout.isTTY === true;\n  const lines: string[] = [];\n  lines.push(`codealmanac v${report.version}`);\n  lines.push(\"\");\n  if (report.install.length > 0) {\n    lines.push(color ? `${BOLD}## Install${RST}` : \"## Install\");\n    for (const c of report.install) {\n      lines.push(formatCheck(c, color));\n    }\n    lines.push(\"\");\n  }\n  if (report.agents.length > 0) {\n    lines.push(color ? `${BOLD}## Agents${RST}` : \"## Agents\");\n    for (const c of report.agents.map(agentToCheck)) {\n      lines.push(formatCheck(c, color));\n    }\n    lines.push(\"\");\n  }\n  if (report.updates.length > 0) {\n    lines.push(color ? `${BOLD}## Updates${RST}` : \"## Updates\");\n    for (const c of report.updates) {\n      lines.push(formatCheck(c, color));\n    }\n    lines.push(\"\");\n  }\n  if (report.wiki.length > 0) {\n    lines.push(color ? `${BOLD}## Current wiki${RST}` : \"## Current wiki\");\n    for (const c of report.wiki) {\n      lines.push(formatCheck(c, color));\n    }\n    lines.push(\"\");\n  }\n  return `${lines.join(\"\\n\")}\\n`;\n}\n\nfunction agentToCheck(agent: AgentDoctorCheck): Check {\n  const message = [\n    agent.label,\n    agent.selected ? \"(default)\" : null,\n    agent.recommended ? \"(recommended)\" : null,\n    agent.status === \"ok\" ? \"ready\" : readinessMessage(agent),\n    `model: ${agent.model ?? \"provider default\"}`,\n    agent.account,\n  ].filter((part): part is string => part !== null).join(\" \");\n  return {\n    status: agent.status,\n    key: `agents.${agent.id}`,\n    message,\n    fix: agent.fix,\n  };\n}\n\nfunction readinessMessage(agent: AgentDoctorCheck): string {\n  if (!agent.installed) return \"missing\";\n  if (!agent.authenticated) return `not ready: ${agent.detail}`;\n  return agent.detail;\n}\n\nfunction formatCheck(c: Check, color: boolean): string {\n  const { icon, tint } = iconFor(c.status, color);\n  const head = `  ${tint}${icon}${color ? RST : \"\"} ${c.message}`;\n  if (c.fix === undefined) return head;\n  const fixLine = color\n    ? `    ${DIM}${c.fix}${RST}`\n    : `    ${c.fix}`;\n  return `${head}\\n${fixLine}`;\n}\n\nfunction iconFor(\n  status: CheckStatus,\n  color: boolean,\n): { icon: string; tint: string } {\n  switch (status) {\n    case \"ok\":\n      return { icon: \"\\u2713\", tint: color ? GREEN : \"\" };\n    case \"problem\":\n      return { icon: \"\\u2717\", tint: color ? RED : \"\" };\n    case \"info\":\n      return { icon: \"\\u25c7\", tint: color ? BLUE : \"\" };\n  }\n}\n","import { existsSync } from \"node:fs\";\nimport { readFile } from \"node:fs/promises\";\nimport { homedir } from \"node:os\";\nimport path from \"node:path\";\n\nimport type { ClaudeAuthStatus } from \"../../agent/providers/claude/index.js\";\nimport {\n  hasCodexInstructions,\n  resolveCodexAgentsPath,\n} from \"../../agent/providers/codex-instructions.js\";\nimport {\n  IMPORT_LINE,\n} from \"../setup.js\";\nimport {\n  classifyInstallPath,\n  detectInstallPath,\n  probeBetterSqlite3,\n  safeCheckAuth,\n} from \"./probes.js\";\nimport type { Check, DoctorOptions } from \"./types.js\";\n\nexport async function gatherInstallChecks(\n  options: DoctorOptions,\n): Promise<Check[]> {\n  const checks: Check[] = [];\n\n  const rawPath = options.installPath ?? detectInstallPath();\n  const { installPath, isEphemeral } = classifyInstallPath(rawPath);\n  checks.push(describeInstallPath(installPath, isEphemeral));\n\n  const nodeVersion = options.nodeVersion ?? process.version;\n  const sqlite = options.sqliteProbe ?? probeBetterSqlite3();\n  checks.push({\n    status: sqlite.ok ? \"ok\" : \"problem\",\n    key: \"install.sqlite\",\n    message: sqlite.ok\n      ? `better-sqlite3 native binding OK (Node ${nodeVersion})`\n      : `better-sqlite3 native binding failed: ${sqlite.summary}`,\n    fix: sqlite.ok\n      ? undefined\n      : \"run: npm rebuild better-sqlite3 (in the install directory)\",\n  });\n\n  const auth = await safeCheckAuth(options.spawnCli);\n  checks.push(describeAuth(auth));\n\n  const settingsPath =\n    options.settingsPath ?? path.join(homedir(), \".claude\", \"settings.json\");\n  checks.push(await describeHook(settingsPath));\n\n  const claudeDir = options.claudeDir ?? path.join(homedir(), \".claude\");\n  checks.push(describeGuides(claudeDir));\n  checks.push(await describeImportLine(claudeDir));\n  const codexDir = options.codexDir ?? path.join(homedir(), \".codex\");\n  checks.push(await describeCodexInstructions(codexDir));\n\n  return checks;\n}\n\nfunction describeInstallPath(\n  installPath: string | null,\n  isEphemeral: boolean,\n): Check {\n  if (installPath === null) {\n    return {\n      status: \"problem\",\n      key: \"install.path\",\n      message: \"could not detect codealmanac install path\",\n      fix: \"reinstall with: npm install -g codealmanac\",\n    };\n  }\n  return {\n    status: isEphemeral ? \"info\" : \"ok\",\n    key: \"install.path\",\n    message: isEphemeral\n      ? `codealmanac running from ephemeral npx location: ${installPath}`\n      : `codealmanac installed at ${installPath}`,\n    fix: isEphemeral\n      ? \"run: npm install -g codealmanac  (to make the install permanent)\"\n      : undefined,\n  };\n}\n\nfunction describeAuth(auth: ClaudeAuthStatus): Check {\n  if (auth.loggedIn) {\n    if (auth.authMethod === \"apiKey\") {\n      return {\n        status: \"ok\",\n        key: \"install.auth\",\n        message: \"claude auth: ANTHROPIC_API_KEY set\",\n      };\n    }\n    const who = auth.email ?? \"Claude account\";\n    const plan =\n      auth.subscriptionType !== undefined\n        ? ` (${auth.subscriptionType} subscription)`\n        : \"\";\n    return {\n      status: \"ok\",\n      key: \"install.auth\",\n      message: `claude auth: ${who}${plan}`,\n    };\n  }\n  if (\n    process.env.ANTHROPIC_API_KEY !== undefined &&\n    process.env.ANTHROPIC_API_KEY.length > 0\n  ) {\n    return {\n      status: \"ok\",\n      key: \"install.auth\",\n      message: \"claude auth: ANTHROPIC_API_KEY set\",\n    };\n  }\n  return {\n    status: \"problem\",\n    key: \"install.auth\",\n    message: \"claude auth: not signed in\",\n    fix: \"run: claude auth login --claudeai  (or export ANTHROPIC_API_KEY)\",\n  };\n}\n\nasync function describeHook(settingsPath: string): Promise<Check> {\n  if (!existsSync(settingsPath)) {\n    return {\n      status: \"problem\",\n      key: \"install.hook\",\n      message: \"SessionEnd hook not installed\",\n      fix: \"run: almanac setup --yes\",\n    };\n  }\n  try {\n    const raw = await readFile(settingsPath, \"utf8\");\n    const parsed = JSON.parse(raw) as {\n      hooks?: {\n        SessionEnd?: {\n          command?: string;\n          hooks?: { command?: string }[];\n        }[];\n      };\n    };\n    const entries = parsed.hooks?.SessionEnd ?? [];\n    const found = entries.some((e) => {\n      if (\n        typeof e?.command === \"string\" &&\n        e.command.endsWith(\"almanac-capture.sh\")\n      ) {\n        return true;\n      }\n      if (Array.isArray(e?.hooks)) {\n        return e.hooks.some(\n          (h) =>\n            typeof h?.command === \"string\" &&\n            h.command.endsWith(\"almanac-capture.sh\"),\n        );\n      }\n      return false;\n    });\n    if (!found) {\n      return {\n        status: \"problem\",\n        key: \"install.hook\",\n        message: \"SessionEnd hook not installed\",\n        fix: \"run: almanac setup --yes\",\n      };\n    }\n    return {\n      status: \"ok\",\n      key: \"install.hook\",\n      message: `SessionEnd hook installed at ${settingsPath}`,\n    };\n  } catch (err: unknown) {\n    const msg = err instanceof Error ? err.message : String(err);\n    return {\n      status: \"problem\",\n      key: \"install.hook\",\n      message: `could not read ${settingsPath}: ${msg}`,\n      fix: \"check the file for malformed JSON\",\n    };\n  }\n}\n\nfunction describeGuides(claudeDir: string): Check {\n  const mini = path.join(claudeDir, \"codealmanac.md\");\n  const ref = path.join(claudeDir, \"codealmanac-reference.md\");\n  const haveMini = existsSync(mini);\n  const haveRef = existsSync(ref);\n  if (haveMini && haveRef) {\n    return {\n      status: \"ok\",\n      key: \"install.guides\",\n      message: `Agent guides installed (${path.basename(mini)}, ${path.basename(ref)})`,\n    };\n  }\n  const missing = [\n    haveMini ? null : \"codealmanac.md\",\n    haveRef ? null : \"codealmanac-reference.md\",\n  ].filter((s): s is string => s !== null);\n  return {\n    status: \"problem\",\n    key: \"install.guides\",\n    message: `Agent guides missing (${missing.join(\", \")})`,\n    fix: \"run: almanac setup --yes\",\n  };\n}\n\nasync function describeImportLine(claudeDir: string): Promise<Check> {\n  const claudeMd = path.join(claudeDir, \"CLAUDE.md\");\n  if (!existsSync(claudeMd)) {\n    return {\n      status: \"problem\",\n      key: \"install.import\",\n      message: \"CLAUDE.md import not present (no ~/.claude/CLAUDE.md)\",\n      fix: \"run: almanac setup --yes\",\n    };\n  }\n  try {\n    const contents = await readFile(claudeMd, \"utf8\");\n    const lines = contents.split(/\\r?\\n/).map((l) => l.trim());\n    const present = lines.some((line) => {\n      if (line === IMPORT_LINE) return true;\n      if (!line.startsWith(IMPORT_LINE)) return false;\n      const next = line[IMPORT_LINE.length];\n      return next === \" \" || next === \"\\t\";\n    });\n    if (present) {\n      return {\n        status: \"ok\",\n        key: \"install.import\",\n        message: \"CLAUDE.md import present\",\n      };\n    }\n    return {\n      status: \"problem\",\n      key: \"install.import\",\n      message: \"CLAUDE.md import line missing\",\n      fix: \"run: almanac setup --yes\",\n    };\n  } catch (err: unknown) {\n    const msg = err instanceof Error ? err.message : String(err);\n    return {\n      status: \"problem\",\n      key: \"install.import\",\n      message: `could not read ${claudeMd}: ${msg}`,\n    };\n  }\n}\n\nasync function describeCodexInstructions(codexDir: string): Promise<Check> {\n  const agentsFile = await resolveCodexAgentsPath(codexDir);\n  if (!existsSync(agentsFile)) {\n    return {\n      status: \"problem\",\n      key: \"install.codexInstructions\",\n      message: `Codex AGENTS instructions missing (${path.basename(agentsFile)} not found)`,\n      fix: \"run: almanac setup --yes\",\n    };\n  }\n  try {\n    const contents = await readFile(agentsFile, \"utf8\");\n    if (hasCodexInstructions(contents)) {\n      return {\n        status: \"ok\",\n        key: \"install.codexInstructions\",\n        message: `Codex AGENTS instructions present (${path.basename(agentsFile)})`,\n      };\n    }\n  } catch (err: unknown) {\n    const msg = err instanceof Error ? err.message : String(err);\n    return {\n      status: \"problem\",\n      key: \"install.codexInstructions\",\n      message: `could not read ${agentsFile}: ${msg}`,\n    };\n  }\n\n  return {\n    status: \"problem\",\n    key: \"install.codexInstructions\",\n    message: `Codex AGENTS instructions missing (${path.basename(agentsFile)})`,\n    fix: \"run: almanac setup --yes\",\n  };\n}\n","import { existsSync, readFileSync } from \"node:fs\";\nimport { createRequire } from \"node:module\";\nimport { homedir } from \"node:os\";\nimport path from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\n\nimport {\n  checkClaudeAuth,\n  type ClaudeAuthStatus,\n  type SpawnCliFn,\n} from \"../../agent/providers/claude/index.js\";\nimport type { SqliteProbeResult } from \"./types.js\";\n\n// Single `createRequire` instance — used by package/binding probes.\nconst req = createRequire(import.meta.url);\n\n/**\n * Detect where codealmanac is installed by walking up from the running\n * module until we find a `package.json` whose `name` is `codealmanac`.\n */\nexport function detectInstallPath(): string | null {\n  try {\n    const here = fileURLToPath(import.meta.url);\n    let dir = path.dirname(here);\n    for (let i = 0; i < 6; i++) {\n      const pkgPath = path.join(dir, \"package.json\");\n      if (existsSync(pkgPath)) {\n        try {\n          const raw = readFileSync(pkgPath, \"utf-8\");\n          const pkg = JSON.parse(raw) as { name?: unknown };\n          if (pkg.name === \"codealmanac\") return dir;\n        } catch {\n          // ignore — keep walking\n        }\n      }\n      const parent = path.dirname(dir);\n      if (parent === dir) break;\n      dir = parent;\n    }\n    return null;\n  } catch {\n    return null;\n  }\n}\n\n/**\n * Classify the detected install path as permanent or ephemeral.\n * Ephemeral locations (npm npx cache, pnpm dlx cache, /tmp/) are valid\n * installs but will disappear when the cache is evicted or the machine\n * reboots. Doctor reports them as `info` rather than `ok`.\n */\nexport function classifyInstallPath(\n  raw: string | null,\n): { installPath: string | null; isEphemeral: boolean } {\n  if (raw === null) return { installPath: null, isEphemeral: false };\n  const home = homedir();\n  const ephemeralPrefixes = [\n    path.join(home, \".npm\", \"_npx\"),\n    path.join(home, \".local\", \"share\", \"pnpm\", \"dlx\"),\n    \"/tmp/\",\n    \"/var/folders/\",\n  ];\n  const isEphemeral = ephemeralPrefixes.some((p) => raw.startsWith(p));\n  return { installPath: raw, isEphemeral };\n}\n\n/**\n * Probe the better-sqlite3 native binding by opening an in-memory DB.\n */\nexport function probeBetterSqlite3(): SqliteProbeResult {\n  try {\n    // eslint-disable-next-line @typescript-eslint/no-var-requires\n    const Database = req(\"better-sqlite3\") as typeof import(\"better-sqlite3\");\n    const db = new Database(\":memory:\");\n    db.close();\n    return { ok: true, summary: \"native binding loads cleanly\" };\n  } catch (err: unknown) {\n    const msg = err instanceof Error ? err.message : String(err);\n    const firstLine = msg.split(\"\\n\")[0] ?? msg;\n    return { ok: false, summary: firstLine };\n  }\n}\n\nexport async function safeCheckAuth(\n  spawnCli?: SpawnCliFn,\n): Promise<ClaudeAuthStatus> {\n  try {\n    return await checkClaudeAuth(spawnCli);\n  } catch {\n    return { loggedIn: false };\n  }\n}\n\nexport function readPackageVersion(): string | null {\n  const candidates = [\n    \"../../../package.json\",\n    \"../../package.json\",\n    \"../package.json\",\n  ];\n  for (const candidate of candidates) {\n    try {\n      const pkg = req(candidate) as { version?: unknown };\n      if (typeof pkg.version === \"string\" && pkg.version.length > 0) {\n        return pkg.version;\n      }\n    } catch {\n      // Fall through to the next runtime layout candidate.\n    }\n  }\n  return null;\n}\n","import { buildProviderSetupView } from \"../../agent/provider-view.js\";\nimport { checkClaudeAuth } from \"../../agent/providers/claude/index.js\";\nimport type { ProviderStatus } from \"../../agent/types.js\";\nimport { isCursorEnabled } from \"../../update/config.js\";\nimport type { AgentDoctorCheck, DoctorOptions } from \"./types.js\";\n\nexport async function gatherAgentChecks(\n  options: DoctorOptions,\n): Promise<AgentDoctorCheck[]> {\n  const view = await buildProviderSetupView({\n    spawnCli: options.spawnCli,\n    statuses:\n      options.providerStatuses ??\n      (options.spawnCli === undefined\n        ? undefined\n        : await injectedProviderStatuses(options)),\n  });\n  return view.choices.map((choice) => {\n    return {\n      status: choice.ready ? \"ok\" : \"problem\",\n      id: choice.id,\n      label: choice.label,\n      readiness: choice.readiness,\n      selected: choice.selected,\n      recommended: choice.recommended,\n      installed: choice.installed,\n      authenticated: choice.authenticated,\n      model: choice.effectiveModel,\n      providerDefaultModel: choice.providerDefaultModel,\n      configuredModel: choice.configuredModel,\n      account: choice.account,\n      detail: choice.detail,\n      fix: choice.fixCommand ?? undefined,\n    };\n  });\n}\n\nasync function injectedProviderStatuses(\n  options: DoctorOptions,\n): Promise<ProviderStatus[]> {\n  const auth = await checkClaudeAuth(options.spawnCli);\n  const hasApiKey =\n    process.env.ANTHROPIC_API_KEY !== undefined &&\n    process.env.ANTHROPIC_API_KEY.length > 0;\n  const claudeReady = auth.loggedIn || hasApiKey;\n  const statuses: ProviderStatus[] = [\n    {\n      id: \"claude\",\n      installed: true,\n      authenticated: claudeReady,\n      detail: claudeReady\n        ? auth.email ?? (hasApiKey ? \"ANTHROPIC_API_KEY set\" : \"logged in\")\n        : \"not logged in\",\n    },\n    {\n      id: \"codex\",\n      installed: false,\n      authenticated: false,\n      detail: \"codex status not injected\",\n    },\n  ];\n  if (isCursorEnabled()) {\n    statuses.push({\n      id: \"cursor\",\n      installed: false,\n      authenticated: false,\n      detail: \"cursor-agent status not injected\",\n    });\n  }\n  return statuses;\n}\n","import { readConfig } from \"../../update/config.js\";\nimport { readStateForDoctor } from \"../../update/schedule.js\";\nimport { isNewer } from \"../../update/semver.js\";\nimport { formatDuration } from \"./duration.js\";\nimport type { Check, DoctorOptions } from \"./types.js\";\n\nexport async function gatherUpdateChecks(\n  options: DoctorOptions,\n  installedVersion: string,\n): Promise<Check[]> {\n  const checks: Check[] = [];\n  const state = readStateForDoctor(options.updateStatePath);\n  const config = await readConfig(options.updateConfigPath);\n\n  if (state === null || state.latest_version.length === 0) {\n    checks.push({\n      status: \"info\",\n      key: \"update.status\",\n      message: `on ${installedVersion}; no update check has run yet`,\n      fix: \"run: almanac update --check\",\n    });\n  } else if (isNewer(state.latest_version, installedVersion)) {\n    const dismissed = state.dismissed_versions.includes(state.latest_version)\n      ? \" (dismissed — run `almanac update` to install anyway)\"\n      : \"\";\n    checks.push({\n      status: \"problem\",\n      key: \"update.status\",\n      message:\n        `${state.latest_version} available (you're on ${installedVersion})${dismissed}`,\n      fix: \"run: almanac update\",\n    });\n  } else {\n    checks.push({\n      status: \"ok\",\n      key: \"update.status\",\n      message: `on latest (${installedVersion})`,\n    });\n  }\n\n  if (state !== null && state.last_check_at > 0) {\n    const now = (options.now?.() ?? new Date()).getTime();\n    const ageMs = now - state.last_check_at * 1000;\n    const failedSuffix =\n      state.last_fetch_failed_at !== undefined &&\n      state.last_fetch_failed_at === state.last_check_at\n        ? \" (last attempt failed — will retry next invocation)\"\n        : \"\";\n    checks.push({\n      status: \"info\",\n      key: \"update.last_check\",\n      message: `last checked: ${formatDuration(ageMs)} ago${failedSuffix}`,\n    });\n  } else {\n    checks.push({\n      status: \"info\",\n      key: \"update.last_check\",\n      message: \"last checked: never\",\n    });\n  }\n\n  checks.push({\n    status: \"info\",\n    key: \"update.notifier\",\n    message: `update notifier: ${config.update_notifier ? \"enabled\" : \"disabled\"}`,\n    fix: config.update_notifier\n      ? undefined\n      : \"run: almanac config set update_notifier true\",\n  });\n\n  if (state !== null && state.dismissed_versions.length > 0) {\n    checks.push({\n      status: \"info\",\n      key: \"update.dismissed\",\n      message: `dismissed versions: ${state.dismissed_versions.join(\", \")}`,\n    });\n  }\n\n  return checks;\n}\n","import { formatReport } from \"./doctor-checks/format.js\";\nimport { gatherInstallChecks } from \"./doctor-checks/install.js\";\nimport { readPackageVersion } from \"./doctor-checks/probes.js\";\nimport type {\n  Check,\n  CheckStatus,\n  AgentDoctorCheck,\n  DoctorOptions,\n  DoctorReport,\n  DoctorResult,\n  SqliteProbeResult,\n} from \"./doctor-checks/types.js\";\nimport { gatherAgentChecks } from \"./doctor-checks/agents.js\";\nimport { gatherUpdateChecks } from \"./doctor-checks/updates.js\";\n\nexport type {\n  Check,\n  CheckStatus,\n  DoctorOptions,\n  DoctorReport,\n  DoctorResult,\n  SqliteProbeResult,\n};\n\n/**\n * `almanac doctor` — install + wiki health report.\n *\n * Separate from `almanac health` (which checks graph integrity of a\n * specific wiki). `doctor` answers the \"is this install even set up\n * correctly?\" question that users hit when first trying the tool or when\n * sessions silently stop getting captured.\n *\n * This file is the command composition root. The section-specific probes\n * and formatting live in `doctor-checks/` so each durable fact has one\n * obvious owner.\n */\nexport async function runDoctor(\n  options: DoctorOptions,\n): Promise<DoctorResult> {\n  const version =\n    options.versionOverride ?? readPackageVersion() ?? \"unknown\";\n\n  const install: Check[] = options.wikiOnly === true\n    ? []\n    : await gatherInstallChecks(options);\n\n  const agents: AgentDoctorCheck[] = options.wikiOnly === true\n    ? []\n    : await gatherAgentChecks(options);\n\n  const updates: Check[] = options.wikiOnly === true\n    ? []\n    : await gatherUpdateChecks(options, version);\n\n  const wiki: Check[] = options.installOnly === true\n    ? []\n    : await safeGatherWikiChecks(options);\n\n  const report: DoctorReport = { version, install, agents, updates, wiki };\n\n  if (options.json === true) {\n    return {\n      stdout: `${JSON.stringify(report, null, 2)}\\n`,\n      stderr: \"\",\n      exitCode: 0,\n    };\n  }\n\n  return {\n    stdout: formatReport(report, options),\n    stderr: \"\",\n    exitCode: 0,\n  };\n}\n\nasync function safeGatherWikiChecks(\n  options: DoctorOptions,\n): Promise<Check[]> {\n  try {\n    const { gatherWikiChecks } = await import(\"./doctor-checks/wiki.js\");\n    return await gatherWikiChecks(options);\n  } catch (err: unknown) {\n    const msg = err instanceof Error ? err.message : String(err);\n    return [\n      {\n        status: \"problem\",\n        key: \"wiki.checks\",\n        message: `could not run wiki checks: ${msg.split(\"\\n\")[0] ?? msg}`,\n        fix: \"run: npm rebuild better-sqlite3 (in the install directory)\",\n      },\n    ];\n  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package/dist/chunk-GPFVEF6V.js.map

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-{"version":3,"sources":["../src/commands/agents.ts"],"sourcesContent":["import {\n  buildProviderSetupView,\n  parseAgentSelection,\n  type ProviderReadiness,\n} from \"../agent/provider-view.js\";\nimport {\n  disabledAgentProviderMessage,\n  formatEnabledAgentProviderList,\n  isAgentProviderId,\n  isEnabledAgentProviderId,\n  readConfig,\n  writeConfig,\n  type AgentProviderId,\n} from \"../update/config.js\";\n\nexport interface AgentsResult {\n  stdout: string;\n  stderr: string;\n  exitCode: number;\n}\n\nexport async function runAgentsList(): Promise<AgentsResult> {\n  const view = await buildProviderSetupView();\n  const lines = [\"codealmanac agents\\n\"];\n  for (const choice of view.choices) {\n    const selected = choice.selected ? \"*\" : \" \";\n    const recommended = choice.recommended ? \"recommended\" : \"\";\n    const model = choice.effectiveModel ?? \"provider default\";\n    const detail = choice.account ?? choice.fixCommand ?? choice.detail;\n    lines.push(\n      [\n        selected,\n        choice.label.padEnd(6),\n        readinessLabel(choice.readiness).padEnd(15),\n        recommended.padEnd(11),\n        `model: ${model}`.padEnd(31),\n        detail,\n      ].join(\" \").trimEnd(),\n    );\n  }\n  lines.push(\n    `\\nUse: almanac agents use <${formatEnabledAgentProviderList().replaceAll(\", \", \"|\")}>`,\n    \"Set model: almanac agents model <provider> <model>\",\n  );\n  return { stdout: `${lines.join(\"\\n\")}\\n`, stderr: \"\", exitCode: 0 };\n}\n\nexport async function runAgentsDoctor(): Promise<AgentsResult> {\n  const view = await buildProviderSetupView();\n  const lines = [\"codealmanac agent doctor\\n\"];\n  for (const choice of view.choices) {\n    lines.push(`${choice.ready ? \"✓\" : \"✗\"} ${choice.label}`);\n    lines.push(`  status: ${readinessLabel(choice.readiness)}`);\n    lines.push(`  model: ${choice.effectiveModel ?? \"provider default\"}`);\n    if (choice.account !== null) {\n      lines.push(`  account: ${choice.account}`);\n    } else if (choice.detail.length > 0) {\n      lines.push(`  detail: ${choice.detail}`);\n    }\n    if (choice.fixCommand !== null) lines.push(`  fix: ${choice.fixCommand}`);\n    lines.push(\"\");\n  }\n  return { stdout: `${lines.join(\"\\n\").trimEnd()}\\n`, stderr: \"\", exitCode: 0 };\n}\n\nexport interface SetDefaultAgentOptions {\n  provider: string;\n}\n\nexport async function runSetDefaultAgent(\n  opts: SetDefaultAgentOptions,\n): Promise<AgentsResult> {\n  return setDefaultAgent(opts);\n}\n\nexport async function runDeprecatedSetDefaultAgent(\n  opts: SetDefaultAgentOptions,\n): Promise<AgentsResult> {\n  return withDeprecation(\n    await setDefaultAgent(opts),\n    \"almanac set default-agent <provider>\",\n    \"almanac agents use <provider>\",\n  );\n}\n\nexport async function runAgentsUse(opts: SetDefaultAgentOptions): Promise<AgentsResult> {\n  return setDefaultAgent(opts);\n}\n\nasync function setDefaultAgent(\n  opts: SetDefaultAgentOptions,\n): Promise<AgentsResult> {\n  const parsed = parseAgentSelection(opts.provider);\n  if (parsed.provider === null) {\n    return {\n      stdout: \"\",\n      stderr:\n        `almanac: unknown agent '${opts.provider}'. ` +\n        `Expected one of: ${formatEnabledAgentProviderList()}.\\n`,\n      exitCode: 1,\n    };\n  }\n  const provider = parsed.provider;\n  if (!isEnabledAgentProviderId(provider)) {\n    return disabledProviderResult(provider);\n  }\n  const config = await readConfig();\n  const next = {\n    ...config,\n    agent: {\n      ...config.agent,\n      default: provider,\n      models:\n        parsed.model === undefined\n          ? config.agent.models\n          : {\n              ...config.agent.models,\n              [provider]: parsed.model,\n            },\n    },\n  };\n  await writeConfig(next);\n  return {\n    stdout:\n      parsed.model === undefined\n        ? `codealmanac: default agent set to ${provider}.\\n`\n        : `codealmanac: default agent set to ${provider}; ${provider} model set to ${parsed.model}.\\n`,\n    stderr: \"\",\n    exitCode: 0,\n  };\n}\n\nexport async function runSetAgentModel(opts: {\n  provider: string;\n  model?: string;\n  defaultModel?: boolean;\n}): Promise<AgentsResult> {\n  return setProviderModel(opts);\n}\n\nexport async function runDeprecatedSetAgentModel(opts: {\n  provider: string;\n  model?: string;\n  defaultModel?: boolean;\n}): Promise<AgentsResult> {\n  return withDeprecation(\n    await setProviderModel(opts),\n    \"almanac set model <provider> <model>\",\n    \"almanac agents model <provider> <model>\",\n  );\n}\n\nexport async function runAgentsModel(opts: {\n  provider: string;\n  model?: string;\n  defaultModel?: boolean;\n}): Promise<AgentsResult> {\n  return setProviderModel(opts);\n}\n\nasync function setProviderModel(opts: {\n  provider: string;\n  model?: string;\n  defaultModel?: boolean;\n}): Promise<AgentsResult> {\n  if (!isAgentProviderId(opts.provider)) {\n    return {\n      stdout: \"\",\n      stderr:\n        `almanac: unknown agent '${opts.provider}'. ` +\n        `Expected one of: ${formatEnabledAgentProviderList()}.\\n`,\n      exitCode: 1,\n    };\n  }\n  if (!isEnabledAgentProviderId(opts.provider)) {\n    return disabledProviderResult(opts.provider);\n  }\n  if (\n    opts.defaultModel !== true &&\n    (opts.model === undefined || opts.model.length === 0)\n  ) {\n    return {\n      stdout: \"\",\n      stderr:\n        `almanac: missing model for ${opts.provider}. ` +\n        \"Pass a model id or --default.\\n\",\n      exitCode: 1,\n    };\n  }\n  const provider = opts.provider as AgentProviderId;\n  const config = await readConfig();\n  const model = normalizeRequestedModel(opts);\n  await writeConfig({\n    ...config,\n    agent: {\n      ...config.agent,\n      models: {\n        ...config.agent.models,\n        [provider]: model,\n      },\n    },\n  });\n  return {\n    stdout:\n      model === null\n        ? `codealmanac: ${provider} model reset to provider default.\\n`\n        : `codealmanac: ${provider} model set to ${model}.\\n`,\n    stderr: \"\",\n    exitCode: 0,\n  };\n}\n\nfunction normalizeRequestedModel(opts: {\n  provider: string;\n  model?: string;\n  defaultModel?: boolean;\n}): string | null {\n  if (opts.defaultModel === true) return null;\n  if (opts.model === undefined || opts.model.length === 0) return null;\n  if (opts.model === \"default\" || opts.model === \"null\") return null;\n  return opts.model;\n}\n\nfunction disabledProviderResult(provider: string): AgentsResult {\n  return {\n    stdout: \"\",\n    stderr: `almanac: ${disabledAgentProviderMessage(provider)}\\n`,\n    exitCode: 1,\n  };\n}\n\nfunction readinessLabel(readiness: ProviderReadiness): string {\n  switch (readiness) {\n    case \"ready\":\n      return \"ready\";\n    case \"missing\":\n      return \"missing\";\n    case \"not-authenticated\":\n      return \"not ready\";\n  }\n}\n\nfunction withDeprecation(\n  result: AgentsResult,\n  oldUsage: string,\n  newUsage: string,\n): AgentsResult {\n  return {\n    ...result,\n    stderr:\n      `almanac: warning: \\`${oldUsage}\\` is deprecated; use \\`${newUsage}\\`.\\n` +\n      result.stderr,\n  };\n}\n"],"mappings":";;;;;;;;;;;;;;;AAqBA,eAAsB,gBAAuC;AAC3D,QAAM,OAAO,MAAM,uBAAuB;AAC1C,QAAM,QAAQ,CAAC,sBAAsB;AACrC,aAAW,UAAU,KAAK,SAAS;AACjC,UAAM,WAAW,OAAO,WAAW,MAAM;AACzC,UAAM,cAAc,OAAO,cAAc,gBAAgB;AACzD,UAAM,QAAQ,OAAO,kBAAkB;AACvC,UAAM,SAAS,OAAO,WAAW,OAAO,cAAc,OAAO;AAC7D,UAAM;AAAA,MACJ;AAAA,QACE;AAAA,QACA,OAAO,MAAM,OAAO,CAAC;AAAA,QACrB,eAAe,OAAO,SAAS,EAAE,OAAO,EAAE;AAAA,QAC1C,YAAY,OAAO,EAAE;AAAA,QACrB,UAAU,KAAK,GAAG,OAAO,EAAE;AAAA,QAC3B;AAAA,MACF,EAAE,KAAK,GAAG,EAAE,QAAQ;AAAA,IACtB;AAAA,EACF;AACA,QAAM;AAAA,IACJ;AAAA,2BAA8B,+BAA+B,EAAE,WAAW,MAAM,GAAG,CAAC;AAAA,IACpF;AAAA,EACF;AACA,SAAO,EAAE,QAAQ,GAAG,MAAM,KAAK,IAAI,CAAC;AAAA,GAAM,QAAQ,IAAI,UAAU,EAAE;AACpE;AAEA,eAAsB,kBAAyC;AAC7D,QAAM,OAAO,MAAM,uBAAuB;AAC1C,QAAM,QAAQ,CAAC,4BAA4B;AAC3C,aAAW,UAAU,KAAK,SAAS;AACjC,UAAM,KAAK,GAAG,OAAO,QAAQ,WAAM,QAAG,IAAI,OAAO,KAAK,EAAE;AACxD,UAAM,KAAK,aAAa,eAAe,OAAO,SAAS,CAAC,EAAE;AAC1D,UAAM,KAAK,YAAY,OAAO,kBAAkB,kBAAkB,EAAE;AACpE,QAAI,OAAO,YAAY,MAAM;AAC3B,YAAM,KAAK,cAAc,OAAO,OAAO,EAAE;AAAA,IAC3C,WAAW,OAAO,OAAO,SAAS,GAAG;AACnC,YAAM,KAAK,aAAa,OAAO,MAAM,EAAE;AAAA,IACzC;AACA,QAAI,OAAO,eAAe,KAAM,OAAM,KAAK,UAAU,OAAO,UAAU,EAAE;AACxE,UAAM,KAAK,EAAE;AAAA,EACf;AACA,SAAO,EAAE,QAAQ,GAAG,MAAM,KAAK,IAAI,EAAE,QAAQ,CAAC;AAAA,GAAM,QAAQ,IAAI,UAAU,EAAE;AAC9E;AAMA,eAAsB,mBACpB,MACuB;AACvB,SAAO,gBAAgB,IAAI;AAC7B;AAEA,eAAsB,6BACpB,MACuB;AACvB,SAAO;AAAA,IACL,MAAM,gBAAgB,IAAI;AAAA,IAC1B;AAAA,IACA;AAAA,EACF;AACF;AAEA,eAAsB,aAAa,MAAqD;AACtF,SAAO,gBAAgB,IAAI;AAC7B;AAEA,eAAe,gBACb,MACuB;AACvB,QAAM,SAAS,oBAAoB,KAAK,QAAQ;AAChD,MAAI,OAAO,aAAa,MAAM;AAC5B,WAAO;AAAA,MACL,QAAQ;AAAA,MACR,QACE,2BAA2B,KAAK,QAAQ,uBACpB,+BAA+B,CAAC;AAAA;AAAA,MACtD,UAAU;AAAA,IACZ;AAAA,EACF;AACA,QAAM,WAAW,OAAO;AACxB,MAAI,CAAC,yBAAyB,QAAQ,GAAG;AACvC,WAAO,uBAAuB,QAAQ;AAAA,EACxC;AACA,QAAM,SAAS,MAAM,WAAW;AAChC,QAAM,OAAO;AAAA,IACX,GAAG;AAAA,IACH,OAAO;AAAA,MACL,GAAG,OAAO;AAAA,MACV,SAAS;AAAA,MACT,QACE,OAAO,UAAU,SACb,OAAO,MAAM,SACb;AAAA,QACE,GAAG,OAAO,MAAM;AAAA,QAChB,CAAC,QAAQ,GAAG,OAAO;AAAA,MACrB;AAAA,IACR;AAAA,EACF;AACA,QAAM,YAAY,IAAI;AACtB,SAAO;AAAA,IACL,QACE,OAAO,UAAU,SACb,qCAAqC,QAAQ;AAAA,IAC7C,qCAAqC,QAAQ,KAAK,QAAQ,iBAAiB,OAAO,KAAK;AAAA;AAAA,IAC7F,QAAQ;AAAA,IACR,UAAU;AAAA,EACZ;AACF;AAEA,eAAsB,iBAAiB,MAIb;AACxB,SAAO,iBAAiB,IAAI;AAC9B;AAEA,eAAsB,2BAA2B,MAIvB;AACxB,SAAO;AAAA,IACL,MAAM,iBAAiB,IAAI;AAAA,IAC3B;AAAA,IACA;AAAA,EACF;AACF;AAEA,eAAsB,eAAe,MAIX;AACxB,SAAO,iBAAiB,IAAI;AAC9B;AAEA,eAAe,iBAAiB,MAIN;AACxB,MAAI,CAAC,kBAAkB,KAAK,QAAQ,GAAG;AACrC,WAAO;AAAA,MACL,QAAQ;AAAA,MACR,QACE,2BAA2B,KAAK,QAAQ,uBACpB,+BAA+B,CAAC;AAAA;AAAA,MACtD,UAAU;AAAA,IACZ;AAAA,EACF;AACA,MAAI,CAAC,yBAAyB,KAAK,QAAQ,GAAG;AAC5C,WAAO,uBAAuB,KAAK,QAAQ;AAAA,EAC7C;AACA,MACE,KAAK,iBAAiB,SACrB,KAAK,UAAU,UAAa,KAAK,MAAM,WAAW,IACnD;AACA,WAAO;AAAA,MACL,QAAQ;AAAA,MACR,QACE,8BAA8B,KAAK,QAAQ;AAAA;AAAA,MAE7C,UAAU;AAAA,IACZ;AAAA,EACF;AACA,QAAM,WAAW,KAAK;AACtB,QAAM,SAAS,MAAM,WAAW;AAChC,QAAM,QAAQ,wBAAwB,IAAI;AAC1C,QAAM,YAAY;AAAA,IAChB,GAAG;AAAA,IACH,OAAO;AAAA,MACL,GAAG,OAAO;AAAA,MACV,QAAQ;AAAA,QACN,GAAG,OAAO,MAAM;AAAA,QAChB,CAAC,QAAQ,GAAG;AAAA,MACd;AAAA,IACF;AAAA,EACF,CAAC;AACD,SAAO;AAAA,IACL,QACE,UAAU,OACN,gBAAgB,QAAQ;AAAA,IACxB,gBAAgB,QAAQ,iBAAiB,KAAK;AAAA;AAAA,IACpD,QAAQ;AAAA,IACR,UAAU;AAAA,EACZ;AACF;AAEA,SAAS,wBAAwB,MAIf;AAChB,MAAI,KAAK,iBAAiB,KAAM,QAAO;AACvC,MAAI,KAAK,UAAU,UAAa,KAAK,MAAM,WAAW,EAAG,QAAO;AAChE,MAAI,KAAK,UAAU,aAAa,KAAK,UAAU,OAAQ,QAAO;AAC9D,SAAO,KAAK;AACd;AAEA,SAAS,uBAAuB,UAAgC;AAC9D,SAAO;AAAA,IACL,QAAQ;AAAA,IACR,QAAQ,YAAY,6BAA6B,QAAQ,CAAC;AAAA;AAAA,IAC1D,UAAU;AAAA,EACZ;AACF;AAEA,SAAS,eAAe,WAAsC;AAC5D,UAAQ,WAAW;AAAA,IACjB,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,EACX;AACF;AAEA,SAAS,gBACP,QACA,UACA,UACc;AACd,SAAO;AAAA,IACL,GAAG;AAAA,IACH,QACE,uBAAuB,QAAQ,2BAA2B,QAAQ;AAAA,IAClE,OAAO;AAAA,EACX;AACF;","names":[]}