codealmanac 0.1.10 → 0.2.1

package/dist/uninstall-FDIOBAAR.js

@@ -0,0 +1,15 @@
+#!/usr/bin/env node
+import {
+  removeImportLine,
+  runUninstall
+} from "./chunk-MX2EW5MR.js";
+import "./chunk-ZDJSJIB6.js";
+import "./chunk-447U3GQJ.js";
+import "./chunk-SSYMRT4I.js";
+import "./chunk-WRUSDYYE.js";
+import "./chunk-7JUX4ADQ.js";
+export {
+  removeImportLine,
+  runUninstall
+};
+//# sourceMappingURL=uninstall-FDIOBAAR.js.map

package/dist/uninstall-FDIOBAAR.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":[],"sourcesContent":[],"mappings":"","names":[]}

package/dist/update-RAF7QRYF.js

@@ -0,0 +1,11 @@
+#!/usr/bin/env node
+import {
+  runUpdate
+} from "./chunk-QQHIVTXT.js";
+import "./chunk-F53U6JQG.js";
+import "./chunk-WRUSDYYE.js";
+import "./chunk-7JUX4ADQ.js";
+export {
+  runUpdate
+};
+//# sourceMappingURL=update-RAF7QRYF.js.map

package/dist/update-RAF7QRYF.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":[],"sourcesContent":[],"mappings":"","names":[]}

package/dist/{wiki-IPSRRGOT.js → wiki-IGNRNLUZ.js}

@@ -4,7 +4,7 @@ import {
   findEntry,
   openIndex,
   runHealth
-} from "./chunk-3C5SY5SE.js";
+} from "./chunk-KQUVMF27.js";
 import {
   formatDuration
 } from "./chunk-4CODZRHH.js";
@@ -234,4 +234,4 @@ function countHealthProblems(jsonStdout) {
 export {
   gatherWikiChecks
 };
-//# sourceMappingURL=wiki-IPSRRGOT.js.map
+//# sourceMappingURL=wiki-IGNRNLUZ.js.map

package/hooks/almanac-capture.sh

@@ -1,8 +1,10 @@
 #!/bin/bash
 # codealmanac SessionEnd hook
 #
-# Claude Code invokes this on session end with a JSON payload on stdin:
+# Claude, Codex, and Cursor invoke this on session end/stop with JSON on stdin.
+# Common payload fields:
 #   { "session_id": "...", "transcript_path": "...", "cwd": "..." }
+# Cursor may omit cwd and provide workspace_roots instead.
 #
 # We walk upward from cwd looking for a `.almanac/` directory. If found, we
 # background `almanac capture` (so session end never waits on us) and
@@ -28,13 +30,21 @@ fi
 INPUT=$(cat)
 SESSION_ID=$(echo "$INPUT" | jq -r '.session_id // empty')
 TRANSCRIPT=$(echo "$INPUT" | jq -r '.transcript_path // empty')
-CWD=$(echo "$INPUT" | jq -r '.cwd // empty')
+CWD=$(echo "$INPUT" | jq -r '.cwd // .workspace_roots[0] // empty')
+FINAL_STATUS=$(echo "$INPUT" | jq -r '.final_status // .reason // empty')
+HOOK_EVENT=$(echo "$INPUT" | jq -r '.hook_event_name // empty')
 
 # Without a transcript or cwd there's nothing for capture to do. Don't
 # error — Claude Code doesn't care, and the user doesn't want a scary log.
 [ -z "$TRANSCRIPT" ] && exit 0
 [ -z "$CWD" ] && exit 0
 
+# Cursor passes final_status; skip aborted/failed sessions. Claude/Codex
+# payloads do not always include this, so empty remains allowed.
+if [ -n "$FINAL_STATUS" ] && [ "$FINAL_STATUS" != "completed" ] && [ "$FINAL_STATUS" != "stop" ]; then
+  exit 0
+fi
+
 # Walk up from cwd looking for a wiki. Bound the loop at the filesystem
 # root ('/') so we can't infinite-loop if cwd is weird.
 DIR="$CWD"
@@ -53,15 +63,38 @@ while [ "$DIR" != "/" ] && [ -n "$DIR" ]; do
       exit 0
     fi
 
+    run_capture() {
+      cd "$DIR" && \
+      $CMD capture "$TRANSCRIPT" --session "$SESSION_ID" --quiet \
+        > "$LOG_DIR/.capture-$SESSION_ID.log" 2>&1
+    }
+
+    # Codex Stop is turn-scoped, not session-scoped. Debounce it so an
+    # interactive session that pauses between turns doesn't run capture
+    # repeatedly. Each Stop refreshes a marker; only the last quiet marker
+    # gets to run capture after the delay.
+    if [ "$HOOK_EVENT" = "Stop" ]; then
+      DELAY="${CODEALMANAC_CAPTURE_DEBOUNCE_SECONDS:-120}"
+      MARKER="$LOG_DIR/.capture-$SESSION_ID.debounce"
+      NOW=$(date +%s)
+      echo "$NOW" > "$MARKER" || exit 0
+      (
+        sleep "$DELAY"
+        [ -f "$MARKER" ] || exit 0
+        CURRENT=$(cat "$MARKER" 2>/dev/null || true)
+        [ "$CURRENT" = "$NOW" ] || exit 0
+        run_capture
+        rm -f "$MARKER"
+      ) &
+      disown $! 2>/dev/null || true
+      exit 0
+    fi
+
     # Background the capture, redirect all output to a session-scoped log.
     # `--quiet` keeps streaming off (the log still captures the raw
     # SDK transcript); `--session` lets the capture command name its
     # own log file consistently if desired.
-    (
-      cd "$DIR" && \
-      $CMD capture "$TRANSCRIPT" --session "$SESSION_ID" --quiet \
-        > "$LOG_DIR/.capture-$SESSION_ID.log" 2>&1
-    ) &
+    ( run_capture ) &
     # Detach so the shell doesn't wait on the subprocess.
     disown $! 2>/dev/null || true
     exit 0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "codealmanac",
-  "version": "0.1.10",
+  "version": "0.2.1",
   "description": "A living wiki for codebases, maintained by AI agents. Documents what the code can't say: decisions, flows, invariants, incidents, gotchas.",
   "keywords": [
     "wiki",
@@ -23,7 +23,8 @@
   "type": "module",
   "bin": {
     "codealmanac": "./dist/codealmanac.js",
-    "almanac": "./dist/codealmanac.js"
+    "almanac": "./dist/codealmanac.js",
+    "alm": "./dist/codealmanac.js"
   },
   "files": [
     "dist",

package/dist/chunk-3C5SY5SE.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/indexer/schema.ts","../src/indexer/index.ts","../src/slug.ts","../src/topics/yaml.ts","../src/indexer/frontmatter.ts","../src/indexer/freshness.ts","../src/indexer/paths.ts","../src/indexer/topics-yaml.ts","../src/indexer/wikilinks.ts","../src/registry/index.ts","../src/commands/health.ts","../src/indexer/duration.ts","../src/indexer/resolve-wiki.ts","../src/topics/dag.ts"],"sourcesContent":["import Database from \"better-sqlite3\";\n\n/**\n * Schema DDL, applied on every open. All statements are `CREATE ... IF NOT\n * EXISTS` so this is idempotent — handy when the file already exists but\n * was written by an older version, and tolerable because the schema is\n * append-only (new tables don't collide).\n *\n * Departures from the raw spec, explained:\n *   - `page_topics.topic_slug` has no FK to `topics(slug)`. Topics are\n *     created lazily when a page declares them; a strict FK would force us\n *     to upsert topic rows before the page rows, which doesn't buy us\n *     anything in slice 2 and locks us out of slice 3's \"no explicit topic\n *     registration needed\" behavior.\n *   - `wikilinks.target_slug` / `cross_wiki_links.target_slug` also have\n *     no FK — these can be intentionally broken (unwritten target page),\n *     and `almanac health` will surface them in slice 3.\n *\n * `file_refs` carries TWO forms of each path:\n *   - `path`          — normalized + lowercased, used for GLOB/equality\n *                       queries (`--mentions`). Stable across casing\n *                       choices on macOS/Windows.\n *   - `original_path` — as-written (normalized slashes, no `./`, trailing\n *                       `/` for dirs), preserving the author's casing.\n *                       Used for filesystem stats (dead-refs on\n *                       case-sensitive filesystems like Linux) and for\n *                       user-facing display (`almanac info`).\n *\n * See also: `SCHEMA_VERSION` below and the migration logic in `openIndex`.\n */\nconst SCHEMA_DDL = `\nCREATE TABLE IF NOT EXISTS pages (\n  slug          TEXT PRIMARY KEY,\n  title         TEXT,\n  file_path     TEXT NOT NULL,\n  content_hash  TEXT NOT NULL,\n  updated_at    INTEGER NOT NULL,\n  archived_at   INTEGER,\n  superseded_by TEXT\n);\n\nCREATE TABLE IF NOT EXISTS topics (\n  slug        TEXT PRIMARY KEY,\n  title       TEXT,\n  description TEXT\n);\n\nCREATE TABLE IF NOT EXISTS page_topics (\n  page_slug  TEXT NOT NULL REFERENCES pages(slug) ON DELETE CASCADE,\n  topic_slug TEXT NOT NULL,\n  PRIMARY KEY (page_slug, topic_slug)\n);\n\nCREATE TABLE IF NOT EXISTS topic_parents (\n  child_slug  TEXT NOT NULL,\n  parent_slug TEXT NOT NULL,\n  PRIMARY KEY (child_slug, parent_slug),\n  CHECK (child_slug != parent_slug)\n);\n\nCREATE TABLE IF NOT EXISTS file_refs (\n  page_slug     TEXT NOT NULL REFERENCES pages(slug) ON DELETE CASCADE,\n  path          TEXT NOT NULL,\n  original_path TEXT NOT NULL,\n  is_dir        INTEGER NOT NULL,\n  PRIMARY KEY (page_slug, path)\n);\nCREATE INDEX IF NOT EXISTS idx_file_refs_path ON file_refs(path);\n\nCREATE TABLE IF NOT EXISTS wikilinks (\n  source_slug TEXT NOT NULL REFERENCES pages(slug) ON DELETE CASCADE,\n  target_slug TEXT NOT NULL,\n  PRIMARY KEY (source_slug, target_slug)\n);\n\nCREATE TABLE IF NOT EXISTS cross_wiki_links (\n  source_slug TEXT NOT NULL REFERENCES pages(slug) ON DELETE CASCADE,\n  target_wiki TEXT NOT NULL,\n  target_slug TEXT NOT NULL,\n  PRIMARY KEY (source_slug, target_wiki, target_slug)\n);\n\n-- NOTE: virtual FTS5 table — ON DELETE CASCADE from pages does NOT apply.\n-- The indexer must explicitly DELETE FROM fts_pages whenever it removes\n-- or replaces a page row, or we leak orphaned FTS rows.\nCREATE VIRTUAL TABLE IF NOT EXISTS fts_pages USING fts5(slug, title, content);\n`;\n\n/**\n * Bump this whenever the schema changes in a backwards-incompatible way.\n * On open we compare the stored `user_version` against this constant; if\n * it's lower, we drop the affected tables so the next `runIndexer` can\n * rebuild them. Full reindex is cheap (everything lives on disk as\n * markdown), so \"drop + recreate\" is simpler than ALTER TABLE migrations.\n *\n * Version history:\n *   1 — initial slice-2 schema\n *   2 — slice-3-review: added `file_refs.original_path`\n */\nconst SCHEMA_VERSION = 2;\n\n/**\n * Open `index.db` and apply the schema. Foreign keys are off by default in\n * SQLite; we turn them on per-connection so the ON DELETE CASCADE on\n * `pages` actually fires when we delete stale rows during incremental\n * reindex.\n *\n * We don't wrap this open in a transaction — `CREATE ... IF NOT EXISTS` is\n * safe to run repeatedly and the FTS5 virtual-table creation is already\n * atomic.\n *\n * Migration: if the DB was created by an older schema (`user_version` <\n * `SCHEMA_VERSION`), we drop the tables whose shape changed and let the\n * CREATE IF NOT EXISTS below rebuild them. The next `runIndexer` repopulates\n * from the filesystem — cheap and avoids the ALTER TABLE dance.\n */\nexport function openIndex(dbPath: string): Database.Database {\n  const db = new Database(dbPath);\n  // WAL journal mode is persistent — once set, it's recorded in the DB\n  // header and survives close/open cycles. Check first and only switch if\n  // we're not already there; this avoids a redundant pragma write on every\n  // query command.\n  const mode = db.pragma(\"journal_mode\", { simple: true });\n  if (typeof mode !== \"string\" || mode.toLowerCase() !== \"wal\") {\n    db.pragma(\"journal_mode = WAL\");\n  }\n  db.pragma(\"foreign_keys = ON\");\n\n  const rawVersion = db.pragma(\"user_version\", { simple: true });\n  const currentVersion = typeof rawVersion === \"number\" ? rawVersion : 0;\n  if (currentVersion < SCHEMA_VERSION) {\n    // Drop tables whose shape changed. `file_refs` got `original_path`\n    // as of v2; easiest to drop it entirely so CREATE IF NOT EXISTS\n    // runs with the new definition. Pages/topics/links are untouched.\n    db.exec(\"DROP TABLE IF EXISTS file_refs\");\n    // The indexer's fast-path skips pages whose content_hash matches,\n    // which means a migration-dropped `file_refs` wouldn't get\n    // repopulated until a page changed. Clear the hash column so the\n    // next reindex treats every page as changed and rebuilds its\n    // file_refs/wikilinks/cross-wiki rows. Table may not exist yet on\n    // a brand-new DB, so swallow errors.\n    try {\n      db.exec(\"UPDATE pages SET content_hash = ''\");\n    } catch {\n      // pages table didn't exist yet; the upcoming CREATE IF NOT EXISTS\n      // takes care of a fresh install.\n    }\n    db.pragma(`user_version = ${SCHEMA_VERSION}`);\n  }\n\n  db.exec(SCHEMA_DDL);\n  return db;\n}\n","import { createHash } from \"node:crypto\";\nimport { existsSync, statSync } from \"node:fs\";\nimport { readFile, utimes } from \"node:fs/promises\";\nimport { basename, join } from \"node:path\";\n\nimport fg from \"fast-glob\";\nimport type Database from \"better-sqlite3\";\n\nimport { toKebabCase } from \"../slug.js\";\nimport { titleCase } from \"../topics/yaml.js\";\nimport { firstH1, parseFrontmatter } from \"./frontmatter.js\";\nimport {\n  PAGES_GLOB,\n  pagesNewerThan,\n  topicsYamlNewerThan,\n} from \"./freshness.js\";\nimport {\n  normalizePath,\n  normalizePathPreservingCase,\n  looksLikeDir,\n} from \"./paths.js\";\nimport { openIndex } from \"./schema.js\";\nimport { applyTopicsYaml, TOPICS_YAML_FILENAME } from \"./topics-yaml.js\";\nimport { extractWikilinks } from \"./wikilinks.js\";\n\nexport interface IndexContext {\n  /** Absolute path to the repo root (the dir containing `.almanac/`). */\n  repoRoot: string;\n}\n\nexport interface IndexResult {\n  /** Pages parsed or re-parsed during this run. Zero when the DB was already up to date. */\n  changed: number;\n  /** Pages present in the DB before this run but missing from disk. */\n  removed: number;\n  /**\n   * Pages on disk at the end of this run — i.e. files that made it all the\n   * way through to the index. Skipped files (slug collisions, unreadable,\n   * un-sluggable filenames) are NOT counted here. Use `filesSeen` for the\n   * raw count of `.md` files encountered on disk.\n   *\n   * Alias retained for backwards-compat with existing tests/consumers; new\n   * code should prefer `pagesIndexed` for clarity.\n   */\n  total: number;\n  /** Pages that made it into the index. Same number as `total`. */\n  pagesIndexed: number;\n  /**\n   * Count of `.md` files found under `pages/` before any filtering. Always\n   * `>= pagesIndexed`; the difference is `filesSkipped`.\n   */\n  filesSeen: number;\n  /**\n   * Files dropped before making it into the index — slug collisions,\n   * un-sluggable filenames, or filesystem races (deleted/unreadable mid-run).\n   * Covered by stderr warnings when non-zero.\n   */\n  filesSkipped: number;\n}\n\n/**\n * The \"front door\" for query commands. Runs the indexer only if the DB is\n * missing or at least one page is newer than it. Meant to be cheap — the\n * common case is \"nothing changed, mtime check returns fast, we're done\".\n *\n * The spec is explicit: \"Reindex is implicit and invisible. If the user\n * didn't didn't explicitly run `reindex`, they shouldn't see reindex\n * output. Silent by default.\" So this function never writes to stdout;\n * warnings (slug collisions, bad frontmatter) still go to stderr.\n */\nexport async function ensureFreshIndex(ctx: IndexContext): Promise<IndexResult> {\n  const almanacDir = join(ctx.repoRoot, \".almanac\");\n  const dbPath = join(almanacDir, \"index.db\");\n  const pagesDir = join(almanacDir, \"pages\");\n\n  if (!existsSync(pagesDir)) {\n    // No pages dir = nothing to index. Open/create the DB so downstream\n    // queries can run against an empty schema rather than crashing on a\n    // missing file.\n    const db = openIndex(dbPath);\n    db.close();\n    return emptyResult();\n  }\n\n  if (\n    !existsSync(dbPath) ||\n    pagesNewerThan(pagesDir, dbPath) ||\n    topicsYamlNewerThan(almanacDir, dbPath)\n  ) {\n    return runIndexer(ctx);\n  }\n  return emptyResult();\n}\n\nfunction emptyResult(): IndexResult {\n  return {\n    changed: 0,\n    removed: 0,\n    total: 0,\n    pagesIndexed: 0,\n    filesSeen: 0,\n    filesSkipped: 0,\n  };\n}\n\n/**\n * Force a full reindex. Identical to `ensureFreshIndex` except it runs\n * the indexer unconditionally. Exposed for `almanac reindex`.\n */\nexport async function runIndexer(ctx: IndexContext): Promise<IndexResult> {\n  const almanacDir = join(ctx.repoRoot, \".almanac\");\n  const dbPath = join(almanacDir, \"index.db\");\n  const pagesDir = join(almanacDir, \"pages\");\n\n  const db = openIndex(dbPath);\n  let result: IndexResult;\n  try {\n    result = await indexPagesInto(db, pagesDir);\n    // After pages are indexed, reconcile the topics table against\n    // `.almanac/topics.yaml` (if present). `indexPagesInto` has already\n    // lazily inserted rows for every topic slug mentioned in page\n    // frontmatter with a title-cased title; `applyTopicsYaml` now\n    // promotes the declared title/description and rewrites parent edges\n    // for those topics that live in the file.\n    await applyTopicsYaml(db, join(almanacDir, TOPICS_YAML_FILENAME));\n  } finally {\n    db.close();\n  }\n\n  // Bump the DB mtime to \"now\" after a successful reindex (even a no-op\n  // one). Otherwise, a page file with a future mtime (clock skew,\n  // `git checkout` preserving source mtimes) would trigger `ensureFreshIndex`\n  // on every query: the freshness check sees `page.mtime > db.mtime`,\n  // reindex runs, finds no content-hash changes, and the DB mtime stays\n  // stale — locking us into a reindex-on-every-query loop. Touching the\n  // DB mtime makes the comparison monotonic.\n  try {\n    const now = new Date();\n    await utimes(dbPath, now, now);\n  } catch {\n    // Touching mtime is a freshness optimization; failures here are\n    // non-fatal and the reindex result is still correct.\n  }\n  return result;\n}\n\ninterface ExistingRow {\n  slug: string;\n  content_hash: string;\n  file_path: string;\n}\n\nasync function indexPagesInto(\n  db: Database.Database,\n  pagesDir: string,\n): Promise<IndexResult> {\n  const files = await fg(PAGES_GLOB, {\n    cwd: pagesDir,\n    absolute: false,\n    onlyFiles: true,\n    caseSensitiveMatch: true,\n  });\n\n  // Load the current state of the index into memory so we can diff against\n  // what's on disk. This is cheap even at 10k pages (one INTEGER + two\n  // short strings per row).\n  const existingRows = db\n    .prepare<[], ExistingRow>(\"SELECT slug, content_hash, file_path FROM pages\")\n    .all();\n  const existingBySlug = new Map<string, ExistingRow>();\n  for (const row of existingRows) existingBySlug.set(row.slug, row);\n\n  // First pass: decide what to do with each file on disk. We record the\n  // intent here so the transaction below can run synchronously — mixing\n  // async file reads into a better-sqlite3 transaction doesn't work\n  // (transactions are sync).\n  const planned: Array<{\n    slug: string;\n    title: string;\n    filePath: string;\n    fullPath: string;\n    contentHash: string;\n    updatedAt: number;\n    archivedAt: number | null;\n    supersededBy: string | null;\n    topics: string[];\n    frontmatterFiles: string[];\n    wikilinks: ReturnType<typeof extractWikilinks>;\n    content: string;\n  }> = [];\n  const seenSlugs = new Set<string>();\n  let filesSkipped = 0;\n\n  for (const rel of files) {\n    const fullPath = join(pagesDir, rel);\n    const base = basename(rel, \".md\");\n    const slug = toKebabCase(base);\n    if (slug.length === 0) {\n      process.stderr.write(\n        `almanac: skipping \"${rel}\" — filename has no slug-able characters\\n`,\n      );\n      filesSkipped++;\n      continue;\n    }\n    if (slug !== base) {\n      // Filename isn't already canonical kebab-case. Warn, but still\n      // index under the canonical slug. `almanac health` (slice 3) will\n      // surface these as a proper report.\n      process.stderr.write(\n        `almanac: warning — \"${rel}\" is not canonical; indexed as slug \"${slug}\"\\n`,\n      );\n    }\n    if (seenSlugs.has(slug)) {\n      // Two files slugify to the same slug. Keep the first, skip the\n      // rest — health will flag this properly in slice 3.\n      process.stderr.write(\n        `almanac: warning — slug \"${slug}\" collides with an earlier file; skipping \"${rel}\"\\n`,\n      );\n      filesSkipped++;\n      continue;\n    }\n\n    // `fast-glob` gave us the list in one shot, but by the time we stat\n    // and read each file it can have been deleted, renamed, or swapped\n    // (editors that save via rename-swap expose this briefly). A single\n    // such race shouldn't tank the whole reindex — matches the malformed-\n    // YAML behavior (\"one bad file doesn't stop the others\"). We narrow\n    // to ENOENT/EACCES so genuine I/O failures (EIO, EMFILE, etc.) still\n    // surface.\n    let st: ReturnType<typeof statSync>;\n    let raw: string;\n    try {\n      st = statSync(fullPath);\n      raw = await readFile(fullPath, \"utf8\");\n    } catch (err: unknown) {\n      if (\n        err instanceof Error &&\n        \"code\" in err &&\n        (err.code === \"ENOENT\" || err.code === \"EACCES\")\n      ) {\n        process.stderr.write(\n          `almanac: skipping \"${rel}\" — ${err.message}\\n`,\n        );\n        filesSkipped++;\n        continue;\n      }\n      throw err;\n    }\n\n    seenSlugs.add(slug);\n    const updatedAt = Math.floor(st.mtimeMs / 1000);\n\n    // Content-hash skip: if the hash matches what's in the DB and the\n    // file path hasn't moved, we can leave this page's rows alone. This\n    // is the fast-path for \"user ran a query; one page was touched\".\n    const contentHash = hashContent(raw);\n    const existing = existingBySlug.get(slug);\n    if (\n      existing !== undefined &&\n      existing.content_hash === contentHash &&\n      existing.file_path === fullPath\n    ) {\n      continue;\n    }\n\n    const fm = parseFrontmatter(raw);\n    const title = fm.title ?? firstH1(fm.body) ?? base;\n    const links = extractWikilinks(fm.body);\n\n    planned.push({\n      slug,\n      title,\n      filePath: rel,\n      fullPath,\n      contentHash,\n      updatedAt,\n      archivedAt: fm.archived_at,\n      supersededBy: fm.superseded_by,\n      topics: fm.topics,\n      frontmatterFiles: fm.files,\n      wikilinks: links,\n      content: fm.body,\n    });\n  }\n\n  // Compute deletions: anything in the DB whose slug isn't on disk\n  // anymore (or whose file slugifies to a different slug now).\n  const toDelete: string[] = [];\n  for (const slug of existingBySlug.keys()) {\n    if (!seenSlugs.has(slug)) toDelete.push(slug);\n  }\n\n  const deleteByPage = db.prepare<[string]>(\"DELETE FROM pages WHERE slug = ?\");\n  const deleteFtsByPage = db.prepare<[string]>(\n    \"DELETE FROM fts_pages WHERE slug = ?\",\n  );\n\n  const replacePage = db.prepare<\n    [string, string, string, string, number, number | null, string | null]\n  >(\n    `INSERT INTO pages (slug, title, file_path, content_hash, updated_at, archived_at, superseded_by)\n     VALUES (?, ?, ?, ?, ?, ?, ?)\n     ON CONFLICT(slug) DO UPDATE SET\n       title         = excluded.title,\n       file_path     = excluded.file_path,\n       content_hash  = excluded.content_hash,\n       updated_at    = excluded.updated_at,\n       archived_at   = excluded.archived_at,\n       superseded_by = excluded.superseded_by`,\n  );\n\n  const deletePageTopics = db.prepare<[string]>(\n    \"DELETE FROM page_topics WHERE page_slug = ?\",\n  );\n  const insertPageTopic = db.prepare<[string, string]>(\n    \"INSERT OR IGNORE INTO page_topics (page_slug, topic_slug) VALUES (?, ?)\",\n  );\n  // Seed ad-hoc topics with a title-cased default. If the topic is\n  // later declared in `.almanac/topics.yaml`, `applyTopicsYaml` will\n  // promote the title/description to whatever the file says. We set the\n  // title here (rather than leaving NULL) so `topics list` and\n  // `health --topic` have a display name even before a user writes to\n  // topics.yaml.\n  const insertTopic = db.prepare<[string, string]>(\n    \"INSERT OR IGNORE INTO topics (slug, title) VALUES (?, ?)\",\n  );\n\n  const deleteFileRefs = db.prepare<[string]>(\n    \"DELETE FROM file_refs WHERE page_slug = ?\",\n  );\n  const insertFileRef = db.prepare<[string, string, string, number]>(\n    \"INSERT OR IGNORE INTO file_refs (page_slug, path, original_path, is_dir) VALUES (?, ?, ?, ?)\",\n  );\n\n  const deleteWikilinks = db.prepare<[string]>(\n    \"DELETE FROM wikilinks WHERE source_slug = ?\",\n  );\n  const insertWikilink = db.prepare<[string, string]>(\n    \"INSERT OR IGNORE INTO wikilinks (source_slug, target_slug) VALUES (?, ?)\",\n  );\n\n  const deleteXwiki = db.prepare<[string]>(\n    \"DELETE FROM cross_wiki_links WHERE source_slug = ?\",\n  );\n  const insertXwiki = db.prepare<[string, string, string]>(\n    \"INSERT OR IGNORE INTO cross_wiki_links (source_slug, target_wiki, target_slug) VALUES (?, ?, ?)\",\n  );\n\n  const insertFts = db.prepare<[string, string, string]>(\n    \"INSERT INTO fts_pages (slug, title, content) VALUES (?, ?, ?)\",\n  );\n\n  const apply = db.transaction(() => {\n    for (const slug of toDelete) {\n      // `fts_pages` is an FTS5 virtual table — FK cascades do NOT propagate\n      // into it, so we must delete FTS rows explicitly before relying on\n      // `DELETE FROM pages` to cascade-clean the four real tables\n      // (page_topics, file_refs, wikilinks, cross_wiki_links). If this\n      // explicit delete ever gets removed, orphaned FTS rows will show up\n      // as phantom search hits pointing at non-existent slugs.\n      deleteFtsByPage.run(slug);\n      deleteByPage.run(slug); // CASCADE cleans page_topics, file_refs, wikilinks, cross_wiki_links\n    }\n\n    for (const p of planned) {\n      // page_topics/file_refs/wikilinks/cross_wiki_links all cascade on\n      // delete, so the cleanest \"replace\" story is: delete-then-insert\n      // the per-page rows under the same transaction. Doing it this way\n      // (rather than `ON CONFLICT DO UPDATE` per row) keeps the logic\n      // uniform and makes \"remove a topic from frontmatter\" work.\n      deletePageTopics.run(p.slug);\n      deleteFileRefs.run(p.slug);\n      deleteWikilinks.run(p.slug);\n      deleteXwiki.run(p.slug);\n      // Same virtual-table reason as the deletion branch above — FTS5\n      // rows do not cascade, so clean them by hand before reinserting.\n      deleteFtsByPage.run(p.slug);\n\n      replacePage.run(\n        p.slug,\n        p.title,\n        p.fullPath,\n        p.contentHash,\n        p.updatedAt,\n        p.archivedAt,\n        p.supersededBy,\n      );\n\n      for (const topic of p.topics) {\n        const topicSlug = toKebabCase(topic);\n        if (topicSlug.length === 0) continue;\n        insertTopic.run(topicSlug, titleCase(topicSlug));\n        insertPageTopic.run(p.slug, topicSlug);\n      }\n\n      // Frontmatter `files:` — normalize each entry, inferring directness\n      // from its trailing slash. Authors who write `src/payments` (no\n      // trailing slash) are asserting a file; this matches how `[[...]]`\n      // classifies the same string. We store both the lowercased form\n      // (for `--mentions` GLOB queries) and the casing-preserving form\n      // (for dead-ref `existsSync` on case-sensitive filesystems).\n      for (const raw of p.frontmatterFiles) {\n        const isDir = looksLikeDir(raw);\n        const path = normalizePath(raw, isDir);\n        const originalPath = normalizePathPreservingCase(raw, isDir);\n        if (path.length === 0) continue;\n        insertFileRef.run(p.slug, path, originalPath, isDir ? 1 : 0);\n      }\n\n      // Inline `[[...]]` extracted from body.\n      for (const ref of p.wikilinks) {\n        switch (ref.kind) {\n          case \"page\":\n            insertWikilink.run(p.slug, ref.target);\n            break;\n          case \"file\":\n            insertFileRef.run(p.slug, ref.path, ref.originalPath, 0);\n            break;\n          case \"folder\":\n            insertFileRef.run(p.slug, ref.path, ref.originalPath, 1);\n            break;\n          case \"xwiki\":\n            insertXwiki.run(p.slug, ref.wiki, ref.target);\n            break;\n        }\n      }\n\n      insertFts.run(p.slug, p.title, p.content);\n    }\n  });\n  apply();\n\n  const pagesIndexed = seenSlugs.size;\n  return {\n    changed: planned.length,\n    removed: toDelete.length,\n    total: pagesIndexed,\n    pagesIndexed,\n    filesSeen: files.length,\n    filesSkipped,\n  };\n}\n\nfunction hashContent(raw: string): string {\n  return createHash(\"sha256\").update(raw).digest(\"hex\");\n}\n","/**\n * Canonical kebab-case slugifier used across the codebase.\n *\n * One function, three callers:\n *   - `registry/index.ts` — wiki name slugs (both auto-derived and\n *     user-supplied via `--name`)\n *   - `indexer/index.ts` — page filename → slug and topic → slug\n *   - `indexer/wikilinks.ts` — wikilink target → slug for resolution\n *\n * All three want the same behavior: lowercased, non-alphanumeric runs\n * collapse to a single hyphen, leading/trailing hyphens trimmed. Keeping\n * this in one place avoids a class of bug where an unusual input (e.g.\n * `Checkout_Flow`) produces different slugs depending on which layer\n * slugified it.\n *\n * Rules:\n *   - Lowercase\n *   - Non-alphanumeric runs collapse to a single hyphen\n *   - Leading/trailing hyphens trimmed\n */\nexport function toKebabCase(input: string): string {\n  return input\n    .toLowerCase()\n    .replace(/[^a-z0-9]+/g, \"-\")\n    .replace(/^-+|-+$/g, \"\");\n}\n","import { existsSync } from \"node:fs\";\nimport { mkdir, readFile, rename, writeFile } from \"node:fs/promises\";\nimport { dirname } from \"node:path\";\n\nimport yaml from \"js-yaml\";\n\nimport { toKebabCase } from \"../slug.js\";\n\n/**\n * One entry in `.almanac/topics.yaml` — the source of truth for topic\n * metadata (title, description, DAG parents). Pages are still the source\n * of truth for which pages belong to which topics; this file only holds\n * the topic-level attributes.\n *\n * `slug` is the canonical kebab-case key used everywhere downstream\n * (SQLite `topics.slug`, page frontmatter `topics:` entries, wikilink\n * targets). `title` is the human-readable name the user typed at create\n * time. `description` is a free-form one-liner (or null when unset).\n * `parents` is the DAG edge list — kept as an array of slugs rather than\n * a nested structure so round-tripping stays boring and a user eyeballing\n * the file can see the full graph.\n */\nexport interface TopicEntry {\n  slug: string;\n  title: string;\n  description: string | null;\n  parents: string[];\n}\n\nexport interface TopicsFile {\n  topics: TopicEntry[];\n}\n\n/**\n * Load `.almanac/topics.yaml` into a `TopicsFile`. A missing file is not\n * an error — it's the first-run state, which we treat as \"no topic\n * metadata, only whatever the pages declare in frontmatter\". Malformed\n * YAML IS an error; we surface it rather than silently clobbering the\n * user's committed source of truth.\n *\n * The return shape is always normalized — callers don't have to guard\n * for missing `topics` key, wrong types, or absent `parents` arrays.\n */\nexport async function loadTopicsFile(path: string): Promise<TopicsFile> {\n  if (!existsSync(path)) {\n    return { topics: [] };\n  }\n  let raw: string;\n  try {\n    raw = await readFile(path, \"utf8\");\n  } catch (err: unknown) {\n    if (isNodeError(err) && err.code === \"ENOENT\") {\n      return { topics: [] };\n    }\n    throw err;\n  }\n\n  const trimmed = raw.trim();\n  if (trimmed.length === 0) {\n    return { topics: [] };\n  }\n\n  let parsed: unknown;\n  try {\n    parsed = yaml.load(raw);\n  } catch (err: unknown) {\n    const message = err instanceof Error ? err.message : String(err);\n    throw new Error(`topics.yaml at ${path} is not valid YAML: ${message}`);\n  }\n\n  if (parsed === null || parsed === undefined) {\n    return { topics: [] };\n  }\n\n  if (typeof parsed !== \"object\" || Array.isArray(parsed)) {\n    throw new Error(`topics.yaml at ${path} must be a mapping`);\n  }\n\n  const obj = parsed as Record<string, unknown>;\n  const rawTopics = obj.topics;\n  if (rawTopics === undefined || rawTopics === null) {\n    return { topics: [] };\n  }\n  if (!Array.isArray(rawTopics)) {\n    throw new Error(`topics.yaml at ${path} — \"topics\" must be a list`);\n  }\n\n  const topics: TopicEntry[] = [];\n  for (const item of rawTopics) {\n    if (typeof item !== \"object\" || item === null || Array.isArray(item)) {\n      continue;\n    }\n    const entry = item as Record<string, unknown>;\n    const slugRaw = entry.slug;\n    if (typeof slugRaw !== \"string\" || slugRaw.trim().length === 0) continue;\n    const slug = toKebabCase(slugRaw);\n    if (slug.length === 0) continue;\n    const title =\n      typeof entry.title === \"string\" && entry.title.trim().length > 0\n        ? entry.title.trim()\n        : titleCase(slug);\n    const description =\n      typeof entry.description === \"string\" &&\n      entry.description.trim().length > 0\n        ? entry.description.trim()\n        : null;\n    const parents: string[] = [];\n    if (Array.isArray(entry.parents)) {\n      for (const p of entry.parents) {\n        if (typeof p === \"string\" && p.trim().length > 0) {\n          const ps = toKebabCase(p);\n          if (ps.length > 0 && ps !== slug && !parents.includes(ps)) {\n            parents.push(ps);\n          }\n        }\n      }\n    }\n    topics.push({ slug, title, description, parents });\n  }\n\n  return { topics };\n}\n\n/**\n * Write a `TopicsFile` atomically — tmp file + rename, same pattern as\n * the registry. A half-written topics.yaml would corrupt the user's\n * committed source of truth, so we never write in place.\n *\n * Ordering: topics are sorted by slug for stable diffs. Parents within\n * each entry stay in the order the caller passed them (semantically an\n * ordered list — topics.yaml is the place a user can visibly reason\n * about \"primary parent first\", even though SQLite treats them as a\n * set).\n *\n * We emit a leading comment so first-time readers know the file is\n * edited by the CLI and what its role is.\n */\nexport async function writeTopicsFile(\n  path: string,\n  file: TopicsFile,\n): Promise<void> {\n  const sorted = [...file.topics].sort((a, b) => a.slug.localeCompare(b.slug));\n  const doc = {\n    topics: sorted.map((t) => {\n      // Emit all four keys in a stable order: slug, title, description,\n      // parents. description is emitted as `null` in YAML when unset so\n      // the schema stays consistent across entries (js-yaml renders the\n      // literal word `null`, not the `~` shorthand).\n      return {\n        slug: t.slug,\n        title: t.title,\n        description: t.description,\n        parents: t.parents,\n      };\n    }),\n  };\n\n  const header =\n    `# .almanac/topics.yaml — source of truth for topic metadata.\\n` +\n    `# Managed by \\`almanac topics\\` commands. User-added comments\\n` +\n    `# between entries will be stripped on the next write (js-yaml\\n` +\n    `# doesn't round-trip comments). Edit at your own risk — or use the\\n` +\n    `# CLI (\\`almanac topics create|link|describe|rename|delete\\`)\\n` +\n    `# which preserves the structure correctly.\\n`;\n  const body = yaml.dump(doc, {\n    lineWidth: 100,\n    noRefs: true,\n    sortKeys: false,\n  });\n  const content = `${header}${body}`;\n  const tmpPath = `${path}.tmp`;\n  // mkdir parent in case `.almanac/` vanished (shouldn't, but cheap insurance)\n  const parent = dirname(path);\n  if (!existsSync(parent)) {\n    await mkdir(parent, { recursive: true });\n  }\n  await writeFile(tmpPath, content, \"utf8\");\n  await rename(tmpPath, path);\n}\n\n/**\n * Look up a topic by slug. Returns `null` when the slug is absent —\n * callers distinguish \"declared in topics.yaml\" from \"ad-hoc (only\n * appears in page frontmatter)\" based on this.\n */\nexport function findTopic(file: TopicsFile, slug: string): TopicEntry | null {\n  for (const t of file.topics) {\n    if (t.slug === slug) return t;\n  }\n  return null;\n}\n\n/**\n * Ensure a topic entry exists. If missing, inserts a minimal entry with\n * title-cased title and null description. Returns the (possibly new)\n * entry. Used by `tag`, `topics create` (with `--parent auto-creating`),\n * and `topics link` (auto-creating child/parent on demand).\n */\nexport function ensureTopic(file: TopicsFile, slug: string): TopicEntry {\n  const existing = findTopic(file, slug);\n  if (existing !== null) return existing;\n  const entry: TopicEntry = {\n    slug,\n    title: titleCase(slug),\n    description: null,\n    parents: [],\n  };\n  file.topics.push(entry);\n  return entry;\n}\n\n/**\n * Convert a slug back to a human-ish title: `auth-flow` → `Auth Flow`.\n * Used as the fallback title when the caller didn't provide one\n * (auto-creation paths, ad-hoc slugs coming from page frontmatter).\n */\nexport function titleCase(slug: string): string {\n  if (slug.length === 0) return slug;\n  return slug\n    .split(\"-\")\n    .filter((s) => s.length > 0)\n    .map((s) => `${s[0]?.toUpperCase() ?? \"\"}${s.slice(1)}`)\n    .join(\" \");\n}\n\nfunction isNodeError(err: unknown): err is NodeJS.ErrnoException {\n  return err instanceof Error && \"code\" in err;\n}\n","import yaml from \"js-yaml\";\n\nexport interface Frontmatter {\n  title?: string;\n  topics: string[];\n  files: string[];\n  archived_at: number | null;\n  superseded_by: string | null;\n  supersedes: string | null;\n  /**\n   * The body of the file with frontmatter removed, for FTS5 and H1 fallback.\n   * Always populated even when the file has no frontmatter.\n   */\n  body: string;\n}\n\n/**\n * Pull YAML frontmatter off the top of a markdown file and coerce the\n * relevant fields. Unknown fields are tolerated silently — the wiki should\n * accept fields we don't understand yet without spewing warnings at the\n * user (future slices might consume them).\n *\n * Failure modes:\n *   - No frontmatter at all → `{ topics: [], files: [], ..., body: raw }`.\n *     This is legal; a heading + prose is a valid page.\n *   - Malformed YAML → warning to stderr, treated as \"no frontmatter\". We\n *     choose not to throw so a single bad file doesn't tank a reindex.\n *\n * Note on `archived_at`: authors write this as a YAML date (`2026-04-15`),\n * which `js-yaml` parses to a JS `Date`. We also tolerate ISO-8601 strings\n * and raw numbers. Everything else gets dropped (treated as \"not\n * archived\"). Storing epoch seconds keeps `--since`/`--stale`/`archived`\n * arithmetic trivial at query time.\n */\nexport function parseFrontmatter(raw: string): Frontmatter {\n  const empty: Frontmatter = {\n    topics: [],\n    files: [],\n    archived_at: null,\n    superseded_by: null,\n    supersedes: null,\n    body: raw,\n  };\n\n  // Frontmatter fence MUST start on line 1 — a `---` partway through the\n  // document is just a horizontal rule. Be strict about the opening delim\n  // so we don't accidentally strip section headers.\n  if (!raw.startsWith(\"---\")) {\n    return empty;\n  }\n\n  // Tolerate either Unix or Windows line endings. We read the first line\n  // explicitly to confirm it's only `---` (no trailing content).\n  const match = raw.match(/^---\\r?\\n([\\s\\S]*?)\\r?\\n---\\r?\\n?([\\s\\S]*)$/);\n  if (match === null) {\n    return empty;\n  }\n\n  const yamlBody = match[1] ?? \"\";\n  const body = match[2] ?? \"\";\n\n  let parsed: unknown;\n  try {\n    parsed = yaml.load(yamlBody);\n  } catch (err: unknown) {\n    const message = err instanceof Error ? err.message : String(err);\n    process.stderr.write(`almanac: malformed frontmatter (${message})\\n`);\n    return empty;\n  }\n\n  if (parsed === null || parsed === undefined) {\n    return { ...empty, body };\n  }\n  if (typeof parsed !== \"object\" || Array.isArray(parsed)) {\n    // Someone wrote a YAML scalar or list as the document root — not a\n    // mapping, so no fields for us to extract. Treat as empty but keep the\n    // post-fence body so FTS5 still gets content.\n    return { ...empty, body };\n  }\n\n  const obj = parsed as Record<string, unknown>;\n\n  return {\n    title: coerceString(obj.title),\n    topics: coerceStringArray(obj.topics),\n    files: coerceStringArray(obj.files),\n    archived_at: coerceEpochSeconds(obj.archived_at),\n    superseded_by: coerceString(obj.superseded_by) ?? null,\n    supersedes: coerceString(obj.supersedes) ?? null,\n    body,\n  };\n}\n\n/**\n * H1 fallback for title when frontmatter has none.\n *\n * Only considers the first 40 lines of the body — any real wiki page has\n * its H1 near the top. NOTE: `String.prototype.split(sep, limit)` still\n * splits the whole string internally and then truncates; it's not an\n * early-bail iteration. For the multi-megabyte files we might see in\n * practice this is still cheap (one regex pass, no allocation per-line\n * beyond the 40 we keep), so we favor the clearer code over hand-rolled\n * line iteration.\n */\nexport function firstH1(body: string): string | undefined {\n  const lines = body.split(/\\r?\\n/, 40);\n  for (const line of lines) {\n    const m = line.match(/^#\\s+(.+?)\\s*#*\\s*$/);\n    if (m !== null) {\n      return m[1];\n    }\n  }\n  return undefined;\n}\n\nfunction coerceString(v: unknown): string | undefined {\n  if (typeof v === \"string\" && v.trim().length > 0) return v.trim();\n  return undefined;\n}\n\nfunction coerceStringArray(v: unknown): string[] {\n  if (!Array.isArray(v)) return [];\n  const out: string[] = [];\n  for (const item of v) {\n    if (typeof item === \"string\" && item.trim().length > 0) {\n      out.push(item.trim());\n    }\n  }\n  return out;\n}\n\n/**\n * Coerce a frontmatter `archived_at` value (YAML Date, ISO string, or raw\n * epoch number) into epoch seconds. Returns `null` for anything we can't\n * make sense of — pages with an unrecognizable `archived_at` are treated as\n * active rather than silently marked archived, which is the safer default.\n */\nfunction coerceEpochSeconds(v: unknown): number | null {\n  if (v instanceof Date) {\n    return Math.floor(v.getTime() / 1000);\n  }\n  if (typeof v === \"number\" && Number.isFinite(v)) {\n    return Math.floor(v);\n  }\n  if (typeof v === \"string\" && v.trim().length > 0) {\n    const t = Date.parse(v.trim());\n    if (!Number.isNaN(t)) {\n      return Math.floor(t / 1000);\n    }\n  }\n  return null;\n}\n","import { existsSync, statSync } from \"node:fs\";\nimport { join } from \"node:path\";\n\nimport fg from \"fast-glob\";\n\n// Glob is relative to `.almanac/pages/`, so this is every markdown page\n// beneath pages without repeating the `pages/` prefix.\nexport const PAGES_GLOB = \"**/*.md\";\n\n/**\n * Return true if any page file has an mtime strictly greater than the\n * index DB's mtime. This is intentionally cheap: `fast-glob` with\n * `stats: true` gives us mtimes without a second `stat` round-trip, and\n * the synchronous walk keeps the decision path simple for CLI entrypoints.\n */\nexport function pagesNewerThan(pagesDir: string, dbPath: string): boolean {\n  let dbMtime: number;\n  try {\n    dbMtime = statSync(dbPath).mtimeMs;\n  } catch {\n    return true;\n  }\n\n  const entries = fg.sync(PAGES_GLOB, {\n    cwd: pagesDir,\n    absolute: true,\n    onlyFiles: true,\n    stats: true,\n  }) as Array<{ path: string; stats?: { mtimeMs: number } }>;\n\n  for (const entry of entries) {\n    const mtime = entry.stats?.mtimeMs;\n    if (mtime !== undefined && mtime > dbMtime) return true;\n  }\n  return false;\n}\n\n/**\n * Return true if `topics.yaml` has an mtime strictly greater than the\n * index DB's mtime. Missing `topics.yaml` is legal: it means \"no topic\n * metadata yet\", not \"the index is stale\".\n */\nexport function topicsYamlNewerThan(\n  almanacDir: string,\n  dbPath: string,\n): boolean {\n  const path = join(almanacDir, \"topics.yaml\");\n  if (!existsSync(path)) return false;\n  let dbMtime: number;\n  try {\n    dbMtime = statSync(dbPath).mtimeMs;\n  } catch {\n    return true;\n  }\n  try {\n    const st = statSync(path);\n    return st.mtimeMs > dbMtime;\n  } catch {\n    return false;\n  }\n}\n","/**\n * Path normalization for the file/folder references stored in `file_refs`\n * and for the query input passed to `--mentions`.\n *\n * The same function runs over both sides so a value written at index time\n * and a value looked up at query time compare byte-for-byte. If this ever\n * drifts between writers and readers, `--mentions` starts silently missing\n * matches — apply one canonicalization, not two.\n *\n * Rules (from the spec, Correctness):\n *   - Lowercase (macOS filesystems are case-insensitive, so the wiki treats\n *     `Src/Checkout/` and `src/checkout/` as the same path)\n *   - Forward slashes only (never backslashes from Windows-authored content)\n *   - No leading `./`\n *   - Collapse redundant slashes (`src//checkout/` → `src/checkout/`)\n *   - Trailing `/` iff the caller says it's a directory\n *\n * The `isDir` flag is a signal carried alongside the path — we don't infer\n * it from the raw string here, because frontmatter `files:` entries and the\n * inline `[[...]]` classifier both decide directness themselves and pass\n * the answer in. Having one place decide and one place normalize keeps the\n * directory inference rule testable in isolation.\n */\nexport function normalizePath(raw: string, isDir: boolean): string {\n  const normalized = normalizeShape(raw, isDir);\n  return normalized.toLowerCase();\n}\n\n/**\n * Normalize shape without lowercasing — preserves the author's casing.\n * Used to store `original_path` in `file_refs` so dead-ref checks on\n * case-sensitive filesystems (Linux, `git` checkouts with core.ignorecase\n * false) stat the actual path on disk rather than a lowercased alias.\n *\n * Everything else about the result is identical to `normalizePath`:\n * forward slashes, no `./`, no duplicate slashes, trailing `/` iff\n * `isDir`. The ONLY difference is the final `.toLowerCase()` is skipped.\n */\nexport function normalizePathPreservingCase(raw: string, isDir: boolean): string {\n  return normalizeShape(raw, isDir);\n}\n\nfunction normalizeShape(raw: string, isDir: boolean): string {\n  let s = raw.trim();\n\n  // Windows-style backslashes → forward slashes. We never want to store\n  // backslashes; a path authored on Windows and checked in should match\n  // the same path authored on macOS.\n  s = s.replace(/\\\\+/g, \"/\");\n\n  // Drop a leading `./` — it's syntactic noise and authors inconsistently\n  // include it. `./src/checkout/` and `src/checkout/` must hash equal.\n  while (s.startsWith(\"./\")) s = s.slice(2);\n\n  // Collapse any run of slashes to a single slash. This also normalizes\n  // `src//checkout/` and accidental doubled slashes from string concat.\n  s = s.replace(/\\/+/g, \"/\");\n\n  // Strip any trailing slashes before re-applying the directory marker —\n  // this way we don't care if the caller fed us `src/checkout` or\n  // `src/checkout/` as a directory; we impose our own rule.\n  s = s.replace(/\\/+$/, \"\");\n\n  if (isDir) {\n    // Directories ALWAYS end with a trailing slash. This is what lets the\n    // GLOB queries distinguish `src/checkout/` (the directory) from\n    // `src/checkout` (a file with no extension) without ambiguity.\n    return `${s}/`;\n  }\n  return s;\n}\n\n/**\n * Infer `isDir` from the raw string the author wrote. Only used at the\n * point of parsing frontmatter `files:` entries and inline `[[...]]`\n * references — everywhere else, `isDir` is already known from context.\n *\n * Rule: trailing `/` (after backslash normalization) means directory.\n */\nexport function looksLikeDir(raw: string): boolean {\n  const s = raw.trim().replace(/\\\\+/g, \"/\");\n  return s.endsWith(\"/\");\n}\n","import { existsSync } from \"node:fs\";\n\nimport type Database from \"better-sqlite3\";\n\nimport { loadTopicsFile } from \"../topics/yaml.js\";\n\nexport const TOPICS_YAML_FILENAME = \"topics.yaml\";\n\n/**\n * Apply the contents of `.almanac/topics.yaml` to SQLite.\n *\n * Called at the tail of every reindex. For each entry in the file we\n * upsert a row into `topics` and rewrite that topic's parent edges.\n *\n * Important invariants:\n * - Missing `topics.yaml` is a no-op. Absence is legal and means \"no\n *   topic metadata yet\".\n * - Topics mentioned only in page frontmatter are legal ad-hoc topics.\n *   Do not delete them just because they are absent from `topics.yaml`.\n * - Stale topic rows are pruned only after upserting declared topics and\n *   collecting current `page_topics`, so `health` does not flag topics\n *   that were removed from every page after a rename/delete.\n */\nexport async function applyTopicsYaml(\n  db: Database.Database,\n  topicsYamlPath: string,\n): Promise<void> {\n  if (!existsSync(topicsYamlPath)) return;\n  let file;\n  try {\n    file = await loadTopicsFile(topicsYamlPath);\n  } catch (err: unknown) {\n    const message = err instanceof Error ? err.message : String(err);\n    process.stderr.write(`almanac: ${message}\\n`);\n    return;\n  }\n\n  const upsertTopic = db.prepare<[string, string, string | null]>(\n    `INSERT INTO topics (slug, title, description) VALUES (?, ?, ?)\n     ON CONFLICT(slug) DO UPDATE SET\n       title = excluded.title,\n       description = excluded.description`,\n  );\n  const clearParents = db.prepare<[string]>(\n    \"DELETE FROM topic_parents WHERE child_slug = ?\",\n  );\n  const insertParent = db.prepare<[string, string]>(\n    \"INSERT OR IGNORE INTO topic_parents (child_slug, parent_slug) VALUES (?, ?)\",\n  );\n\n  // Declared means either explicitly present in topics.yaml or currently\n  // referenced by page frontmatter. Anything outside this set is stale.\n  const declared = new Set<string>();\n  for (const t of file.topics) declared.add(t.slug);\n  const adHoc = db\n    .prepare<[], { topic_slug: string }>(\n      \"SELECT DISTINCT topic_slug FROM page_topics\",\n    )\n    .all();\n  for (const r of adHoc) declared.add(r.topic_slug);\n\n  const apply = db.transaction(() => {\n    for (const t of file.topics) {\n      upsertTopic.run(t.slug, t.title, t.description);\n      clearParents.run(t.slug);\n      for (const parent of t.parents) {\n        if (parent === t.slug) continue;\n        insertParent.run(t.slug, parent);\n      }\n    }\n\n    // Prune stale topic rows + any edges attached to them last, after\n    // the upserts above have promoted declared slugs.\n    const existing = db\n      .prepare<[], { slug: string }>(\"SELECT slug FROM topics\")\n      .all();\n    const deleteTopic = db.prepare<[string]>(\"DELETE FROM topics WHERE slug = ?\");\n    const deleteEdgesByChild = db.prepare<[string]>(\n      \"DELETE FROM topic_parents WHERE child_slug = ?\",\n    );\n    const deleteEdgesByParent = db.prepare<[string]>(\n      \"DELETE FROM topic_parents WHERE parent_slug = ?\",\n    );\n    for (const r of existing) {\n      if (declared.has(r.slug)) continue;\n      deleteEdgesByChild.run(r.slug);\n      deleteEdgesByParent.run(r.slug);\n      deleteTopic.run(r.slug);\n    }\n  });\n  apply();\n}\n","import { toKebabCase } from \"../slug.js\";\nimport {\n  looksLikeDir,\n  normalizePath,\n  normalizePathPreservingCase,\n} from \"./paths.js\";\n\n/**\n * One parsed `[[...]]` reference from a page body. Classification is\n * deterministic and content-based — see `classifyWikilink` below.\n *\n * Callers dispatch on `kind`:\n *   - `page`    → row in `wikilinks`\n *   - `file`    → row in `file_refs` with `is_dir = 0`\n *   - `folder`  → row in `file_refs` with `is_dir = 1`\n *   - `xwiki`   → row in `cross_wiki_links`\n *\n * File/folder refs carry TWO forms of the path:\n *   - `path`         — lowercased (for `--mentions` lookups)\n *   - `originalPath` — as-written (for filesystem stats on case-sensitive\n *                      systems and for user-facing display)\n */\nexport type WikilinkRef =\n  | { kind: \"page\"; target: string }\n  | { kind: \"file\"; path: string; originalPath: string }\n  | { kind: \"folder\"; path: string; originalPath: string }\n  | { kind: \"xwiki\"; wiki: string; target: string };\n\n/**\n * Rules from the spec (\"Classification rules\"), applied in order:\n *\n *   1. Contains `:` before any `/`  → cross-wiki reference (`wiki:slug`)\n *   2. Contains `/`                  → file or folder reference\n *          - Trailing `/` = folder\n *          - Otherwise    = file\n *   3. Otherwise                     → page slug wikilink\n *\n * Edge cases the test suite pins down:\n *   - `[[a:b/c]]`      → xwiki (colon is before the slash, rule 1 wins)\n *   - `[[src/a:b]]`    → file (slash is before the colon, rule 2 wins)\n *   - `[[./x]]`        → the leading `./` is stripped by `normalizePath`,\n *                        so this lands in `file_refs` as `x`. A bare `./x`\n *                        with no inner slash would classify as a file.\n *   - `[[foo|display]]`→ Obsidian-style display text is stripped; we key\n *                        on the target only. A future slice could surface\n *                        display text in `almanac info`.\n */\nexport function classifyWikilink(raw: string): WikilinkRef | null {\n  // Strip Obsidian-style `|display` suffix — we don't index display text\n  // in slice 2, but we want the classifier to see the real target.\n  const pipe = raw.indexOf(\"|\");\n  let body = pipe === -1 ? raw : raw.slice(0, pipe);\n  body = body.trim();\n  if (body.length === 0) return null;\n\n  const firstColon = body.indexOf(\":\");\n  const firstSlash = body.indexOf(\"/\");\n\n  // Rule 1: cross-wiki, `wiki:slug`. Only if the colon comes before any\n  // slash — otherwise `src/urls.ts:42` (hypothetical) would wrongly\n  // classify as xwiki.\n  if (firstColon !== -1 && (firstSlash === -1 || firstColon < firstSlash)) {\n    const wiki = body.slice(0, firstColon).trim();\n    const target = body.slice(firstColon + 1).trim();\n    if (wiki.length === 0 || target.length === 0) return null;\n    return { kind: \"xwiki\", wiki, target };\n  }\n\n  // Rule 2: file or folder. The `/` may be anywhere including trailing.\n  if (firstSlash !== -1) {\n    const isDir = looksLikeDir(body);\n    const path = normalizePath(body, isDir);\n    const originalPath = normalizePathPreservingCase(body, isDir);\n    if (path.length === 0) return null;\n    return isDir\n      ? { kind: \"folder\", path, originalPath }\n      : { kind: \"file\", path, originalPath };\n  }\n\n  // Rule 3: page slug wikilink. Authors might write `Checkout Flow` or\n  // `Checkout_Flow` by accident — slugify defensively so backlinks still\n  // resolve in those cases.\n  const target = toKebabCase(body);\n  if (target.length === 0) return null;\n  return { kind: \"page\", target };\n}\n\n/**\n * Walk a markdown body and pull every `[[...]]` reference. We scan the\n * whole body rather than try to skip code blocks — the spec is explicit:\n * \"Prose outside `[[...]]` is just prose. No backtick-path heuristics, no\n * false positives from code blocks or log output.\" A `[[foo]]` inside a\n * fenced code block is still a wikilink. Authors who genuinely need a\n * literal `[[x]]` in code can escape one of the brackets.\n */\nexport function extractWikilinks(body: string): WikilinkRef[] {\n  const out: WikilinkRef[] = [];\n  const re = /\\[\\[([^\\]\\n]+)\\]\\]/g;\n  let m: RegExpExecArray | null;\n  while ((m = re.exec(body)) !== null) {\n    const ref = classifyWikilink(m[1] ?? \"\");\n    if (ref !== null) out.push(ref);\n  }\n  return out;\n}\n","import { mkdir, readFile, rename, writeFile } from \"node:fs/promises\";\nimport { dirname } from \"node:path\";\n\nimport { getGlobalAlmanacDir, getRegistryPath } from \"../paths.js\";\nimport { toKebabCase } from \"../slug.js\";\n\n// Re-export so existing import sites (`from \"../registry/index.js\"`) keep\n// working without a mechanical fan-out. The canonical home is `../slug.js`.\nexport { toKebabCase };\n\n/**\n * One entry in `~/.almanac/registry.json`.\n *\n * `name` is the canonical kebab-case slug the user types. `path` is the\n * absolute repo root (the directory that contains `.almanac/`). We store\n * absolute paths so cross-wiki resolution works regardless of the caller's\n * cwd.\n */\nexport interface RegistryEntry {\n  name: string;\n  description: string;\n  path: string;\n  registered_at: string;\n}\n\n/**\n * Read the registry file into memory.\n *\n * A missing file is not an error — it's the first-run state, which we\n * treat as an empty registry. A malformed file IS an error; we surface it\n * rather than silently clobbering the user's data.\n */\nexport async function readRegistry(): Promise<RegistryEntry[]> {\n  const path = getRegistryPath();\n  let raw: string;\n  try {\n    raw = await readFile(path, \"utf8\");\n  } catch (err: unknown) {\n    if (isNodeError(err) && err.code === \"ENOENT\") {\n      return [];\n    }\n    throw err;\n  }\n\n  const trimmed = raw.trim();\n  if (trimmed.length === 0) {\n    return [];\n  }\n\n  let parsed: unknown;\n  try {\n    parsed = JSON.parse(trimmed);\n  } catch (err: unknown) {\n    const message = err instanceof Error ? err.message : String(err);\n    throw new Error(`registry at ${path} is not valid JSON: ${message}`);\n  }\n\n  if (!Array.isArray(parsed)) {\n    throw new Error(`registry at ${path} must be a JSON array`);\n  }\n\n  // Validate every entry. We do NOT silently coerce missing `name` or\n  // `path` — an entry with `name: \"\"` would be unremovable via `--drop`\n  // and an empty `path` would match any `findEntry({ path: \"\" })` call.\n  // If someone hand-edited the registry into a bad state, surfacing the\n  // error is strictly better than limping along with corrupt data.\n  return parsed.map((item, idx) => {\n    if (typeof item !== \"object\" || item === null) {\n      throw new Error(`registry entry ${idx} is not an object`);\n    }\n    const e = item as Record<string, unknown>;\n    const name = typeof e.name === \"string\" ? e.name : \"\";\n    const path = typeof e.path === \"string\" ? e.path : \"\";\n    if (name.length === 0) {\n      throw new Error(`registry entry ${idx} is missing a non-empty \"name\"`);\n    }\n    if (path.length === 0) {\n      throw new Error(`registry entry ${idx} is missing a non-empty \"path\"`);\n    }\n    return {\n      name,\n      description: typeof e.description === \"string\" ? e.description : \"\",\n      path,\n      registered_at:\n        typeof e.registered_at === \"string\" ? e.registered_at : \"\",\n    };\n  });\n}\n\n/**\n * Persist the registry to disk. Creates `~/.almanac/` if it doesn't exist.\n *\n * We write with a trailing newline and 2-space indentation so the file is\n * diff-friendly if someone ever commits or inspects it manually.\n *\n * The write is atomic: we write to `registry.json.tmp` and then rename,\n * which is an atomic operation on every mainstream filesystem. This\n * matters because two concurrent `almanac init` (or autoregister) calls\n * from different shells would otherwise race on a partial write and\n * corrupt the file — a single `rename` means one wins cleanly and the\n * other's contents are simply dropped.\n */\nexport async function writeRegistry(entries: RegistryEntry[]): Promise<void> {\n  const path = getRegistryPath();\n  await mkdir(dirname(path), { recursive: true });\n  const body = `${JSON.stringify(entries, null, 2)}\\n`;\n  const tmpPath = `${path}.tmp`;\n  await writeFile(tmpPath, body, \"utf8\");\n  await rename(tmpPath, path);\n}\n\n/**\n * macOS (HFS+/APFS default) and Windows (NTFS default) are case-insensitive\n * but case-preserving. `/Users/x/Project` and `/Users/x/project` are the\n * same directory. We must treat them as the same registry entry, or a\n * single `almanac init` from a differently-cased cwd would duplicate the\n * row. Linux is case-sensitive — do not normalize there.\n *\n * Callers still store the original casing; only comparisons are lowercased.\n */\nfunction pathsEqual(a: string, b: string): boolean {\n  if (process.platform === \"darwin\" || process.platform === \"win32\") {\n    return a.toLowerCase() === b.toLowerCase();\n  }\n  return a === b;\n}\n\n/**\n * Add (or replace) an entry in the registry.\n *\n * Uniqueness is enforced on BOTH `name` and `path`: a repo can only appear\n * once, and a name can only refer to one repo. If either matches, we\n * replace the existing entry rather than creating a duplicate. This is\n * what makes auto-registration idempotent.\n */\nexport async function addEntry(entry: RegistryEntry): Promise<RegistryEntry[]> {\n  const existing = await readRegistry();\n  const filtered = existing.filter(\n    (e) => e.name !== entry.name && !pathsEqual(e.path, entry.path),\n  );\n  filtered.push(entry);\n  await writeRegistry(filtered);\n  return filtered;\n}\n\n/**\n * Remove an entry by name. Returns the removed entry (or `null` if none\n * matched). Only `almanac list --drop <name>` calls this — we never drop\n * automatically, even for unreachable paths.\n */\nexport async function dropEntry(name: string): Promise<RegistryEntry | null> {\n  const existing = await readRegistry();\n  const idx = existing.findIndex((e) => e.name === name);\n  if (idx === -1) {\n    return null;\n  }\n  const [removed] = existing.splice(idx, 1);\n  await writeRegistry(existing);\n  return removed ?? null;\n}\n\n/**\n * Find an entry by either name or absolute path. Used by auto-registration\n * to decide whether the current repo is already known.\n *\n * Path comparison is case-insensitive on macOS/Windows (see `pathsEqual`).\n */\nexport async function findEntry(params: {\n  name?: string;\n  path?: string;\n}): Promise<RegistryEntry | null> {\n  const entries = await readRegistry();\n  for (const entry of entries) {\n    if (params.name !== undefined && entry.name === params.name) return entry;\n    if (params.path !== undefined && pathsEqual(entry.path, params.path)) {\n      return entry;\n    }\n  }\n  return null;\n}\n\n/**\n * Ensure the global `.almanac/` directory exists. Safe to call repeatedly;\n * `mkdir recursive` is a no-op when the directory already exists.\n */\nexport async function ensureGlobalDir(): Promise<void> {\n  await mkdir(getGlobalAlmanacDir(), { recursive: true });\n}\n\nfunction isNodeError(err: unknown): err is NodeJS.ErrnoException {\n  return err instanceof Error && \"code\" in err;\n}\n","import { existsSync } from \"node:fs\";\nimport { readFile } from \"node:fs/promises\";\nimport { basename, join } from \"node:path\";\n\nimport fg from \"fast-glob\";\nimport type Database from \"better-sqlite3\";\n\nimport { BLUE, BOLD, DIM, GREEN, RED, RST } from \"../ansi.js\";\nimport { parseDuration } from \"../indexer/duration.js\";\nimport { ensureFreshIndex } from \"../indexer/index.js\";\nimport { resolveWikiRoot } from \"../indexer/resolve-wiki.js\";\nimport { openIndex } from \"../indexer/schema.js\";\nimport { findEntry } from \"../registry/index.js\";\nimport { toKebabCase } from \"../slug.js\";\nimport { subtreeInDb } from \"../topics/dag.js\";\n\n/**\n * `almanac health` — flag problems in the wiki.\n *\n * Eight independent categories, each checked against the current index\n * and filesystem. Categories never throw each other off; one failing\n * is not a reason to skip the others.\n *\n * Scoping:\n *   - `--topic <slug>` narrows every page-scoped category to pages\n *     tagged with that topic OR any descendant topic (DAG traversal).\n *     Topic-level categories (`empty_topics`) are narrowed to the\n *     subtree itself.\n *   - `--stdin` reads page slugs from stdin and limits page-scoped\n *     categories to that set.\n *\n * Output:\n *   - default: human-readable, grouped by category with counts.\n *   - `--json`: one big object, shape = `HealthReport`.\n */\n\nexport interface HealthReport {\n  orphans: { slug: string }[];\n  stale: { slug: string; days_since_update: number }[];\n  dead_refs: { slug: string; path: string }[];\n  broken_links: { source_slug: string; target_slug: string }[];\n  broken_xwiki: { source_slug: string; target_wiki: string; target_slug: string }[];\n  empty_topics: { slug: string }[];\n  empty_pages: { slug: string }[];\n  slug_collisions: { slug: string; paths: string[] }[];\n}\n\nexport interface HealthOptions {\n  cwd: string;\n  wiki?: string;\n  topic?: string;\n  stale?: string;\n  stdin?: boolean;\n  stdinInput?: string;\n  json?: boolean;\n}\n\nexport interface HealthCommandOutput {\n  stdout: string;\n  stderr: string;\n  exitCode: number;\n}\n\n/**\n * Default `--stale` window. 90 days matches the spec. Users can tune\n * with `--stale <duration>` using the shared parser.\n */\nconst DEFAULT_STALE_SECONDS = 90 * 24 * 60 * 60;\n\nexport async function runHealth(\n  options: HealthOptions,\n): Promise<HealthCommandOutput> {\n  const repoRoot = await resolveWikiRoot({ cwd: options.cwd, wiki: options.wiki });\n  await ensureFreshIndex({ repoRoot });\n\n  const almanacDir = join(repoRoot, \".almanac\");\n  const pagesDir = join(almanacDir, \"pages\");\n  const db = openIndex(join(almanacDir, \"index.db\"));\n\n  try {\n    const staleSeconds = options.stale !== undefined\n      ? parseDuration(options.stale)\n      : DEFAULT_STALE_SECONDS;\n\n    const scope = resolveScope(db, options);\n\n    const report: HealthReport = {\n      orphans: findOrphans(db, scope),\n      stale: findStale(db, scope, staleSeconds),\n      dead_refs: await findDeadRefs(db, scope, repoRoot),\n      broken_links: findBrokenLinks(db, scope),\n      broken_xwiki: await findBrokenXwiki(db, scope),\n      empty_topics: findEmptyTopics(db, scope),\n      empty_pages: await findEmptyPages(db, scope, pagesDir),\n      slug_collisions: await findSlugCollisions(pagesDir),\n    };\n\n    if (options.json === true) {\n      return {\n        stdout: `${JSON.stringify(report, null, 2)}\\n`,\n        stderr: \"\",\n        exitCode: 0,\n      };\n    }\n\n    return {\n      stdout: formatReport(report),\n      stderr: \"\",\n      exitCode: 0,\n    };\n  } finally {\n    db.close();\n  }\n}\n\ninterface HealthScope {\n  /** When non-null, restrict page-scoped checks to these slugs. */\n  pages: Set<string> | null;\n  /** When non-null, restrict topic-scoped checks to these slugs. */\n  topics: Set<string> | null;\n}\n\n/**\n * Compute the active page/topic scope from `--topic` and `--stdin`\n * flags. Both null = no restriction (report everything).\n */\nfunction resolveScope(db: Database.Database, options: HealthOptions): HealthScope {\n  let pages: Set<string> | null = null;\n  let topics: Set<string> | null = null;\n\n  if (options.topic !== undefined) {\n    const rootSlug = toKebabCase(options.topic);\n    if (rootSlug.length > 0) {\n      const subtree = subtreeInDb(db, rootSlug);\n      topics = new Set(subtree);\n      const placeholders = subtree.map(() => \"?\").join(\", \");\n      const rows = db\n        .prepare<unknown[], { page_slug: string }>(\n          `SELECT DISTINCT page_slug FROM page_topics\n           WHERE topic_slug IN (${placeholders})`,\n        )\n        .all(...subtree);\n      pages = new Set(rows.map((r) => r.page_slug));\n    }\n  }\n\n  if (options.stdin === true && options.stdinInput !== undefined) {\n    const stdinPages = new Set<string>();\n    for (const line of options.stdinInput.split(/\\r?\\n/)) {\n      const s = line.trim();\n      if (s.length > 0) stdinPages.add(s);\n    }\n    // Intersect with any existing topic-scoped set.\n    if (pages === null) pages = stdinPages;\n    else {\n      const out = new Set<string>();\n      for (const s of stdinPages) if (pages.has(s)) out.add(s);\n      pages = out;\n    }\n  }\n\n  return { pages, topics };\n}\n\nfunction inPageScope(scope: HealthScope, slug: string): boolean {\n  if (scope.pages === null) return true;\n  return scope.pages.has(slug);\n}\n\n// ─────────────────────────────────────────────────────────────────────\n// individual checks\n// ─────────────────────────────────────────────────────────────────────\n\n/**\n * Pages with zero `topics:`. Archived pages are exempt — the spec\n * excludes them from search by default and they're inherently\n * \"retired\", not \"abandoned\".\n */\nfunction findOrphans(\n  db: Database.Database,\n  scope: HealthScope,\n): { slug: string }[] {\n  const rows = db\n    .prepare<[], { slug: string }>(\n      `SELECT p.slug FROM pages p\n       WHERE p.archived_at IS NULL\n         AND NOT EXISTS (\n           SELECT 1 FROM page_topics pt WHERE pt.page_slug = p.slug\n         )\n       ORDER BY p.slug`,\n    )\n    .all();\n  return rows.filter((r) => inPageScope(scope, r.slug));\n}\n\n/**\n * Active pages whose `updated_at` is older than `staleSeconds`. We\n * report `days_since_update` rather than a raw timestamp because the\n * spec's example output (\"old-architecture (124 days)\") shows that.\n */\nfunction findStale(\n  db: Database.Database,\n  scope: HealthScope,\n  staleSeconds: number,\n): { slug: string; days_since_update: number }[] {\n  const now = Math.floor(Date.now() / 1000);\n  const threshold = now - staleSeconds;\n  const rows = db\n    .prepare<[number], { slug: string; updated_at: number }>(\n      `SELECT slug, updated_at FROM pages\n       WHERE archived_at IS NULL AND updated_at < ?\n       ORDER BY updated_at ASC`,\n    )\n    .all(threshold);\n  return rows\n    .filter((r) => inPageScope(scope, r.slug))\n    .map((r) => ({\n      slug: r.slug,\n      days_since_update: Math.floor((now - r.updated_at) / (60 * 60 * 24)),\n    }));\n}\n\n/**\n * `file_refs` whose target paths no longer exist on disk. We `stat`\n * each referenced path, relative to the repo root, and report misses.\n *\n * Only checks active pages — archived pages are allowed to reference\n * files that have since been deleted (that's often why they were\n * archived in the first place).\n *\n * We stat the `original_path` (author's casing) rather than the\n * lowercased `path` — on case-sensitive filesystems like Linux, stat\n * of a lowercased alias of `src/Dockerfile` returns ENOENT even\n * though the file exists. macOS and Windows are case-insensitive so\n * either form resolves there; using the original consistently means\n * the code behaves identically on every host.\n */\nasync function findDeadRefs(\n  db: Database.Database,\n  scope: HealthScope,\n  repoRoot: string,\n): Promise<{ slug: string; path: string }[]> {\n  const rows = db\n    .prepare<\n      [],\n      { slug: string; path: string; original_path: string; is_dir: number }\n    >(\n      `SELECT p.slug, r.path, r.original_path, r.is_dir\n       FROM file_refs r\n       JOIN pages p ON p.slug = r.page_slug\n       WHERE p.archived_at IS NULL\n       ORDER BY p.slug, r.path`,\n    )\n    .all();\n  const out: { slug: string; path: string }[] = [];\n  for (const r of rows) {\n    if (!inPageScope(scope, r.slug)) continue;\n    const abs = join(repoRoot, r.original_path);\n    if (!existsSync(abs)) {\n      // Surface the author's casing in the report — matches what's in\n      // the user's frontmatter/wikilink, which is what they'll search\n      // for when fixing the miss.\n      out.push({ slug: r.slug, path: r.original_path });\n    }\n  }\n  return out;\n}\n\n/**\n * Wikilinks whose target slug has no row in `pages`. Every other\n * page-scoped check filters archived source pages out; this one and\n * `findBrokenXwiki` follow the same rule so the report doesn't flag\n * broken links from pages that have been retired.\n */\nfunction findBrokenLinks(\n  db: Database.Database,\n  scope: HealthScope,\n): { source_slug: string; target_slug: string }[] {\n  const rows = db\n    .prepare<[], { source_slug: string; target_slug: string }>(\n      `SELECT w.source_slug, w.target_slug\n       FROM wikilinks w\n       JOIN pages src ON src.slug = w.source_slug\n       LEFT JOIN pages tgt ON tgt.slug = w.target_slug\n       WHERE tgt.slug IS NULL AND src.archived_at IS NULL\n       ORDER BY w.source_slug, w.target_slug`,\n    )\n    .all();\n  return rows.filter((r) => inPageScope(scope, r.source_slug));\n}\n\n/**\n * Cross-wiki links whose target wiki isn't registered OR whose path\n * is unreachable. Per the plan we stop at \"wiki unregistered or path\n * missing\" — walking into the other wiki's `index.db` to check the\n * slug exists is explicitly out of scope for slice 3 (documented in\n * the plan). A follow-up slice can deepen this.\n */\nasync function findBrokenXwiki(\n  db: Database.Database,\n  scope: HealthScope,\n): Promise<{ source_slug: string; target_wiki: string; target_slug: string }[]> {\n  const rows = db\n    .prepare<\n      [],\n      { source_slug: string; target_wiki: string; target_slug: string }\n    >(\n      // Same archived-source filter as `findBrokenLinks`. Retired pages\n      // shouldn't spam the report with links to wikis that may have\n      // been intentionally retired too.\n      `SELECT x.source_slug, x.target_wiki, x.target_slug\n       FROM cross_wiki_links x\n       JOIN pages src ON src.slug = x.source_slug\n       WHERE src.archived_at IS NULL\n       ORDER BY x.source_slug, x.target_wiki, x.target_slug`,\n    )\n    .all();\n  const out: { source_slug: string; target_wiki: string; target_slug: string }[] = [];\n  // Cache the registry lookup so we only resolve each wiki once.\n  const reachableCache = new Map<string, boolean>();\n  for (const r of rows) {\n    if (!inPageScope(scope, r.source_slug)) continue;\n    let ok = reachableCache.get(r.target_wiki);\n    if (ok === undefined) {\n      const entry = await findEntry({ name: r.target_wiki });\n      ok = entry !== null && existsSync(join(entry.path, \".almanac\"));\n      reachableCache.set(r.target_wiki, ok);\n    }\n    if (!ok) {\n      out.push({\n        source_slug: r.source_slug,\n        target_wiki: r.target_wiki,\n        target_slug: r.target_slug,\n      });\n    }\n  }\n  return out;\n}\n\n/** Topics with zero pages. */\nfunction findEmptyTopics(\n  db: Database.Database,\n  scope: HealthScope,\n): { slug: string }[] {\n  const rows = db\n    .prepare<[], { slug: string }>(\n      `SELECT t.slug FROM topics t\n       WHERE NOT EXISTS (\n         SELECT 1 FROM page_topics pt WHERE pt.topic_slug = t.slug\n       )\n       ORDER BY t.slug`,\n    )\n    .all();\n  if (scope.topics === null) return rows;\n  return rows.filter((r) => scope.topics!.has(r.slug));\n}\n\n/**\n * Pages whose body is effectively empty — only frontmatter, maybe a\n * heading, no prose. \"Empty\" = after dropping frontmatter and heading\n * lines, the remaining non-blank non-whitespace content is < 40\n * characters. This matches the test from the plan: \"a page with only\n * frontmatter + heading is empty; with a paragraph it's not.\"\n *\n * Archived pages are exempt — deliberately minimal archive stubs\n * shouldn't be flagged.\n */\nasync function findEmptyPages(\n  db: Database.Database,\n  scope: HealthScope,\n  pagesDir: string,\n): Promise<{ slug: string }[]> {\n  const rows = db\n    .prepare<[], { slug: string; file_path: string }>(\n      `SELECT slug, file_path FROM pages\n       WHERE archived_at IS NULL\n       ORDER BY slug`,\n    )\n    .all();\n  const out: { slug: string }[] = [];\n  for (const r of rows) {\n    if (!inPageScope(scope, r.slug)) continue;\n    let raw: string;\n    try {\n      raw = await readFile(r.file_path, \"utf8\");\n    } catch {\n      continue;\n    }\n    // Strip frontmatter if present.\n    const m = raw.match(/^---\\r?\\n[\\s\\S]*?\\r?\\n---\\r?\\n?([\\s\\S]*)$/);\n    const body = m !== null ? (m[1] ?? \"\") : raw;\n    // \"Empty\" = after dropping frontmatter, heading lines, and blank\n    // lines, nothing non-trivial remains. A single-line wikilink or\n    // one-sentence paragraph counts as content; a page with only a\n    // heading (or a heading + whitespace) does not.\n    //\n    // `pagesDir` is accepted for parity with future content-resolution\n    // checks (e.g., resolving includes); referenced so lint doesn't\n    // complain about an unused parameter.\n    void pagesDir;\n    const hasSubstance = body\n      .split(/\\r?\\n/)\n      .some((l) => {\n        const t = l.trim();\n        if (t.length === 0) return false;\n        if (t.startsWith(\"#\")) return false;\n        return true;\n      });\n    if (!hasSubstance) {\n      out.push({ slug: r.slug });\n    }\n  }\n  return out;\n}\n\n/**\n * Walk `.almanac/pages/` and group filenames by their kebab-cased\n * slug. Any slug with >1 filename is a collision. We rescan rather\n * than reading a persisted table — indexing surfaces collisions only\n * as warnings, so a dedicated rescan gives us a definitive answer\n * without adding a new table.\n */\nasync function findSlugCollisions(\n  pagesDir: string,\n): Promise<{ slug: string; paths: string[] }[]> {\n  if (!existsSync(pagesDir)) return [];\n  const files = await fg(\"**/*.md\", {\n    cwd: pagesDir,\n    absolute: false,\n    onlyFiles: true,\n    caseSensitiveMatch: true,\n  });\n  const bySlug = new Map<string, string[]>();\n  for (const rel of files) {\n    const slug = toKebabCase(basename(rel, \".md\"));\n    if (slug.length === 0) continue;\n    const list = bySlug.get(slug) ?? [];\n    list.push(rel);\n    bySlug.set(slug, list);\n  }\n  const out: { slug: string; paths: string[] }[] = [];\n  for (const [slug, paths] of bySlug.entries()) {\n    if (paths.length > 1) {\n      out.push({ slug, paths: paths.sort() });\n    }\n  }\n  out.sort((a, b) => a.slug.localeCompare(b.slug));\n  return out;\n}\n\n// ─────────────────────────────────────────────────────────────────────\n// pretty-print\n// ─────────────────────────────────────────────────────────────────────\n\nfunction formatReport(r: HealthReport): string {\n  const sections: string[] = [];\n  sections.push(\n    section(\n      \"orphans\",\n      r.orphans.length,\n      r.orphans.map((o) => `  ${BLUE}${o.slug}${RST}`),\n    ),\n  );\n  sections.push(\n    section(\n      \"stale\",\n      r.stale.length,\n      r.stale.map((s) => `  ${BLUE}${s.slug}${RST}     ${DIM}(${s.days_since_update} days)${RST}`),\n    ),\n  );\n  sections.push(\n    section(\n      \"dead-refs\",\n      r.dead_refs.length,\n      r.dead_refs.map((d) => `  ${BLUE}${d.slug}${RST}  references ${d.path} ${DIM}(missing)${RST}`),\n    ),\n  );\n  sections.push(\n    section(\n      \"broken-links\",\n      r.broken_links.length,\n      r.broken_links.map(\n        (b) => `  ${BLUE}${b.source_slug}${RST} → ${b.target_slug} ${DIM}(target does not exist)${RST}`,\n      ),\n    ),\n  );\n  sections.push(\n    section(\n      \"broken-xwiki\",\n      r.broken_xwiki.length,\n      r.broken_xwiki.map(\n        (b) =>\n          `  ${BLUE}${b.source_slug}${RST} → ${b.target_wiki}:${b.target_slug} ${DIM}(wiki unregistered or unreachable)${RST}`,\n      ),\n    ),\n  );\n  sections.push(\n    section(\n      \"empty-topics\",\n      r.empty_topics.length,\n      r.empty_topics.map((e) => `  ${BLUE}${e.slug}${RST}`),\n    ),\n  );\n  sections.push(\n    section(\n      \"empty-pages\",\n      r.empty_pages.length,\n      r.empty_pages.map((e) => `  ${BLUE}${e.slug}${RST}`),\n    ),\n  );\n  sections.push(\n    section(\n      \"slug-collisions\",\n      r.slug_collisions.length,\n      r.slug_collisions.map((c) => `  ${BLUE}${c.slug}${RST}: ${c.paths.join(\", \")}`),\n    ),\n  );\n  return `${sections.join(\"\\n\\n\")}\\n`;\n}\n\nfunction section(label: string, count: number, lines: string[]): string {\n  if (count === 0) return `${BOLD}${label}${RST} ${GREEN}(0): (ok)${RST}`;\n  return `${BOLD}${label}${RST} ${RED}(${count})${RST}:\\n${lines.join(\"\\n\")}`;\n}\n","/**\n * Parse a compact duration string of the form `<N><unit>` into seconds.\n *\n * Accepted units (from the spec, `--since` / `--stale`):\n *   - `m` — minutes\n *   - `h` — hours\n *   - `d` — days\n *   - `w` — weeks\n *\n * Examples: `2w` → 1209600, `30d` → 2592000, `12h` → 43200.\n *\n * Anything else throws — the CLI surfaces the error with the usual\n * `almanac: <message>` prefix, which is clearer than silently treating\n * `2weeks` or `30 days` as zero.\n */\nexport function parseDuration(input: string): number {\n  const trimmed = input.trim();\n  const m = trimmed.match(/^(\\d+)([mhdw])$/);\n  if (m === null) {\n    throw new Error(\n      `invalid duration \"${input}\" (expected Nw, Nd, Nh, or Nm — e.g. 2w, 30d)`,\n    );\n  }\n  const n = Number.parseInt(m[1] ?? \"0\", 10);\n  const unit = m[2];\n  switch (unit) {\n    case \"m\":\n      return n * 60;\n    case \"h\":\n      return n * 60 * 60;\n    case \"d\":\n      return n * 60 * 60 * 24;\n    case \"w\":\n      return n * 60 * 60 * 24 * 7;\n    default:\n      // Unreachable — regex pins the unit — but satisfies exhaustiveness.\n      throw new Error(`invalid duration unit \"${unit ?? \"\"}\"`);\n  }\n}\n","import { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\n\nimport { findNearestAlmanacDir } from \"../paths.js\";\nimport { findEntry } from \"../registry/index.js\";\n\n/**\n * Figure out which repo root a query command should run against.\n *\n * Two modes, in order of precedence:\n *   1. `--wiki <name>`  — look it up in the global registry. Fails\n *      explicitly if the name isn't registered or its path has gone\n *      missing (unmounted drive, deleted repo). No silent fallback, which\n *      would hide the real problem from the user.\n *   2. default — walk up from `cwd` like git does. Fails if we're not\n *      inside a `.almanac/` repo.\n *\n * Returns the absolute path to the repo root (the directory containing\n * `.almanac/`).\n *\n * NOTE (spec contract, not yet implemented): when `--all` lands in a\n * future slice, it must silently skip wikis whose paths have gone\n * unreachable — the asymmetry with `--wiki <name>` is deliberate.\n * Explicit lookup is loud about failures (user named a specific wiki);\n * bulk `--all` is quiet (user asked \"whatever's available\"). Don't\n * unify the error behavior when adding `--all`.\n */\nexport async function resolveWikiRoot(params: {\n  cwd: string;\n  wiki?: string;\n}): Promise<string> {\n  if (params.wiki !== undefined) {\n    const entry = await findEntry({ name: params.wiki });\n    if (entry === null) {\n      throw new Error(`no registered wiki named \"${params.wiki}\"`);\n    }\n    if (!existsSync(join(entry.path, \".almanac\"))) {\n      throw new Error(\n        `wiki \"${params.wiki}\" path is unreachable (${entry.path})`,\n      );\n    }\n    return entry.path;\n  }\n\n  const nearest = findNearestAlmanacDir(params.cwd);\n  if (nearest === null) {\n    throw new Error(\n      \"no .almanac/ found in this directory or any parent; run `almanac bootstrap` first\",\n    );\n  }\n  return nearest;\n}\n","import type Database from \"better-sqlite3\";\n\nimport type { TopicsFile } from \"./yaml.js\";\n\n/**\n * Depth cap for all recursive traversals of the topics DAG. Belt and\n * suspenders alongside the `CHECK (child_slug != parent_slug)` on the\n * `topic_parents` table — even if a cycle somehow slipped into the data\n * (hand-edited `topics.yaml`, past bug), the CTE can't runaway.\n *\n * 32 is chosen as \"deeper than any real human-authored taxonomy will\n * ever go\". A 32-level topic hierarchy is absurd; anything hitting this\n * cap is almost certainly a cycle.\n */\nexport const DAG_DEPTH_CAP = 32;\n\n/**\n * Given a `topics.yaml` in memory, compute the set of ancestors of a\n * given slug (not including the slug itself). Used by `topics link`\n * to check whether a proposed edge would create a cycle.\n *\n * Running off the in-memory file lets `link` validate BEFORE touching\n * either the DB or the YAML, so a refusal doesn't leave half the state\n * mutated. Depth-capped with the same constant as the SQLite CTE.\n */\nexport function ancestorsInFile(\n  file: TopicsFile,\n  slug: string,\n): Set<string> {\n  // Build a child → parents map once.\n  const parentsOf = new Map<string, string[]>();\n  for (const t of file.topics) {\n    parentsOf.set(t.slug, t.parents);\n  }\n  const ancestors = new Set<string>();\n  // BFS, depth-capped. We stop descending when we've hit the cap or\n  // revisit an already-seen node (self-loop defense).\n  let frontier: string[] = parentsOf.get(slug) ?? [];\n  let depth = 0;\n  while (frontier.length > 0 && depth < DAG_DEPTH_CAP) {\n    const next: string[] = [];\n    for (const node of frontier) {\n      if (ancestors.has(node)) continue;\n      ancestors.add(node);\n      const ps = parentsOf.get(node);\n      if (ps !== undefined) next.push(...ps);\n    }\n    frontier = next;\n    depth += 1;\n  }\n  return ancestors;\n}\n\n/**\n * Return all descendants of a given topic slug via the SQLite\n * `topic_parents` table. Depth-capped at `DAG_DEPTH_CAP`.\n *\n * Used by `topics show --descendants` to expand a topic's page list\n * through its subtopics. The query is a canonical recursive CTE; we\n * `UNION` (not `UNION ALL`) so cycles in the data don't spin forever.\n */\nexport function descendantsInDb(\n  db: Database.Database,\n  slug: string,\n): string[] {\n  const rows = db\n    .prepare<[string, number], { slug: string }>(\n      `WITH RECURSIVE desc(slug, depth) AS (\n         SELECT child_slug, 1 FROM topic_parents WHERE parent_slug = ?\n         UNION\n         SELECT tp.child_slug, d.depth + 1\n         FROM topic_parents tp\n         JOIN desc d ON tp.parent_slug = d.slug\n         WHERE d.depth < ?\n       )\n       SELECT DISTINCT slug FROM desc ORDER BY slug`,\n    )\n    .all(slug, DAG_DEPTH_CAP)\n    .map((r) => r.slug);\n  return rows;\n}\n\n/**\n * Return the subtree rooted at `slug` (the slug itself + all\n * descendants). Convenience wrapper used by `health --topic` to scope\n * reports through the DAG.\n */\nexport function subtreeInDb(db: Database.Database, slug: string): string[] {\n  return [slug, ...descendantsInDb(db, 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package/dist/chunk-3LC55TG6.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/commands/setup.ts","../src/agent/auth.ts","../src/commands/setup/install-path.ts","../src/commands/setup/next-steps.ts"],"sourcesContent":["import { existsSync } from \"node:fs\";\nimport {\n  copyFile,\n  mkdir,\n  readFile,\n  writeFile,\n} from \"node:fs/promises\";\nimport { createRequire } from \"node:module\";\nimport { homedir } from \"node:os\";\nimport path from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\n\nimport {\n  checkClaudeAuth,\n  type ClaudeAuthStatus,\n  type SpawnCliFn,\n  UNAUTHENTICATED_MESSAGE,\n} from \"../agent/auth.js\";\nimport { runHookInstall } from \"./hook.js\";\nimport {\n  detectCurrentInstallPath,\n  detectEphemeral,\n  spawnGlobalInstall,\n} from \"./setup/install-path.js\";\nimport {\n  countExistingPages,\n  printNextSteps,\n} from \"./setup/next-steps.js\";\n\n/**\n * `codealmanac setup` — the MCP-style branded TUI that runs when a user\n * invokes the bare `codealmanac` binary (or `almanac setup` / `codealmanac\n * setup` explicitly).\n *\n * Model: `mcp-ts/src/setup.ts` from openalmanac. Same ASCII banner + badge\n * + step-indicator style, same interactive + `--yes` + non-interactive\n * modes.\n *\n * Three things get installed:\n *\n *   1. The `SessionEnd` hook in `~/.claude/settings.json` (delegated to\n *      `runHookInstall` from `./hook.ts`).\n *   2. The short \"how to use codealmanac\" guide at\n *      `~/.claude/codealmanac.md`, sourced from `guides/mini.md` in the\n *      package.\n *   3. The full reference at `~/.claude/codealmanac-reference.md`,\n *      sourced from `guides/reference.md`.\n *   4. An `@~/.claude/codealmanac.md` import line in `~/.claude/CLAUDE.md`\n *      so Claude Code picks up the short guide globally.\n *\n * Everything is idempotent — running setup again is safe. `--skip-hook`\n * and `--skip-guides` opt out of the individual installs. `--yes` or a\n * non-TTY stdin skips all prompts and installs everything.\n */\n\nexport interface SetupOptions {\n  /** Install everything without prompting. */\n  yes?: boolean;\n  /** Don't install the SessionEnd hook. */\n  skipHook?: boolean;\n  /** Don't install the CLAUDE.md guides. */\n  skipGuides?: boolean;\n\n  // ─── Injection points (tests only) ────────────────────────────────\n  /** Override the subprocess spawner for `claude auth status`. */\n  spawnCli?: SpawnCliFn;\n  /** Override `~/.claude/settings.json` path. */\n  settingsPath?: string;\n  /** Override the bundled hook script path. */\n  hookScriptPath?: string;\n  /** Override the stable hooks directory for the hook script copy. */\n  stableHooksDir?: string;\n  /** Override `~/.claude/` dir for guide install. */\n  claudeDir?: string;\n  /** Override the directory containing `mini.md` / `reference.md`. */\n  guidesDir?: string;\n  /** Override interactivity; defaults to `process.stdin.isTTY`. */\n  isTTY?: boolean;\n  /** Stdout sink; defaults to `process.stdout`. */\n  stdout?: NodeJS.WritableStream;\n  /**\n   * Override the install-path probe result. When `null` the probe is\n   * bypassed (tests that don't care about the ephemeral-path step).\n   * When a string it's treated as the detected install path.\n   */\n  installPath?: string | null;\n  /**\n   * Override the npm global install spawner (tests inject a no-op to\n   * avoid actually spawning npm during CI).\n   */\n  spawnGlobalInstall?: () => Promise<void>;\n}\n\nexport interface SetupResult {\n  stdout: string;\n  stderr: string;\n  exitCode: number;\n}\n\n// ─── ANSI helpers ────────────────────────────────────────────────────\n\nconst RST = \"\\x1b[0m\";\nconst DIM = \"\\x1b[2m\";\nconst WHITE_BOLD = \"\\x1b[1;37m\";\nconst BLUE = \"\\x1b[38;5;75m\";\nconst ACCENT_BG = \"\\x1b[48;5;252m\\x1b[38;5;16m\";\n\nconst GRADIENT = [\n  \"\\x1b[38;5;255m\",\n  \"\\x1b[38;5;253m\",\n  \"\\x1b[38;5;251m\",\n  \"\\x1b[38;5;249m\",\n  \"\\x1b[38;5;246m\",\n  \"\\x1b[38;5;243m\",\n];\n\n// `codealmanac` 11-letter ASCII banner. Chosen for tasteful rendering —\n// same banner used in the MCP setup wizard design, retooled letters for\n// the word \"codealmanac\". Each glyph is 6 lines tall.\n//\n// If you tweak this, keep it to ≤80 visual columns wide so it fits in\n// narrow terminals (80 cols is the classic default).\nconst LOGO_LINES = [\n  \"  ___ ___  ___  ___   _   _    __  __   _   _  _   _   ___ \",\n  \" / __/ _ \\\\|   \\\\| __| /_\\\\ | |  |  \\\\/  | /_\\\\ | \\\\| | /_\\\\ / __|\",\n  \"| (_| (_) | |) | _| / _ \\\\| |__| |\\\\/| |/ _ \\\\| .` |/ _ \\\\ (__ \",\n  \" \\\\___\\\\___/|___/|___/_/ \\\\_\\\\____|_|  |_/_/ \\\\_\\\\_|\\\\_/_/ \\\\_\\\\___|\",\n  \"                                                           \",\n  \"        a living wiki for codebases, for your agent         \",\n];\n\nconst BAR = `  ${DIM}\\u2502${RST}`;\n\nfunction printBanner(out: NodeJS.WritableStream): void {\n  out.write(\"\\n\");\n  for (let i = 0; i < LOGO_LINES.length; i++) {\n    const color = GRADIENT[Math.min(i, GRADIENT.length - 1)] ?? \"\";\n    out.write(`${color}${LOGO_LINES[i]}${RST}\\n`);\n  }\n  out.write(`\\n${WHITE_BOLD}  Install the hook + agent guides${RST}\\n`);\n}\n\nfunction printBadge(out: NodeJS.WritableStream): void {\n  out.write(`\\n   ${ACCENT_BG} codealmanac ${RST}\\n\\n`);\n}\n\nfunction stepDone(out: NodeJS.WritableStream, msg: string): void {\n  out.write(`  ${BLUE}\\u25c7${RST}  ${msg}\\n`);\n}\n\nfunction stepActive(out: NodeJS.WritableStream, msg: string): void {\n  out.write(`  ${BLUE}\\u25c6${RST}  ${msg}\\n`);\n}\n\nfunction stepSkipped(out: NodeJS.WritableStream, msg: string): void {\n  out.write(`  ${DIM}\\u25cb  ${msg}${RST}\\n`);\n}\n\n// ─── Entry point ─────────────────────────────────────────────────────\n\nexport async function runSetup(\n  options: SetupOptions = {},\n): Promise<SetupResult> {\n  const out = options.stdout ?? process.stdout;\n  const isTTY =\n    options.isTTY ?? (process.stdin.isTTY === true);\n  const interactive = isTTY && options.yes !== true;\n\n  // No-op fast path. When the caller explicitly skipped every install\n  // step, rendering the full banner + step markers + \"Setup complete\"\n  // box is actively misleading — nothing was actually set up. Emit a\n  // single terse line and exit so the user gets honest feedback and\n  // piped callers (CI, scripts) don't parse through nine lines of ANSI\n  // to conclude nothing happened.\n  if (options.skipHook === true && options.skipGuides === true) {\n    out.write(\n      \"codealmanac: nothing to install — use --help to see what setup does\\n\",\n    );\n    return { stdout: \"\", stderr: \"\", exitCode: 0 };\n  }\n\n  printBanner(out);\n  printBadge(out);\n\n  // Step 1: auth status. We report what we find; we don't block. The user\n  // can still install the hook + guides without being logged in — they'll\n  // hit the auth wall on first `capture`, not on setup.\n  const auth = await safeCheckAuth(options.spawnCli);\n  reportAuth(out, auth);\n  out.write(BAR + \"\\n\");\n\n  // Step 1b: ephemeral install detection. When codealmanac was invoked via\n  // `npx codealmanac` (no prior `npm i -g`), the binary lives inside an\n  // npx cache directory or pnpm store that can be evicted at any time.\n  // `almanac` is also not on PATH, so the user can't use it after setup.\n  //\n  // When we detect an ephemeral location, we offer (or, on --yes, perform)\n  // a `npm install -g codealmanac` to make the install permanent.\n  //\n  // This is Bug #2 from codealmanac-known-bugs.md.\n  const ephem = options.installPath !== undefined\n    ? (options.installPath !== null\n        ? detectEphemeral(options.installPath)\n        : false)\n    : detectEphemeral(detectCurrentInstallPath());\n  if (ephem) {\n    let globalAction: InstallDecision = \"install\";\n    if (interactive) {\n      globalAction = await confirm(\n        out,\n        `Running from an ephemeral npx location. Install globally so 'almanac' stays on PATH?`,\n        true,\n      );\n    }\n    if (globalAction === \"install\") {\n      stepActive(out, \"Installing codealmanac globally…\");\n      try {\n        await (options.spawnGlobalInstall ?? spawnGlobalInstall)();\n        stepDone(out, \"codealmanac installed globally (almanac now on PATH)\");\n      } catch (err: unknown) {\n        const msg = err instanceof Error ? err.message : String(err);\n        stepActive(out, `Global install failed: ${msg}`);\n        out.write(\n          `  ${DIM}You can retry manually: npm install -g codealmanac${RST}\\n`,\n        );\n      }\n    } else {\n      stepSkipped(\n        out,\n        `Global install ${DIM}skipped — almanac will not be on PATH after this session${RST}`,\n      );\n    }\n    out.write(BAR + \"\\n\");\n  }\n\n  // Step 2: install the hook (default yes).\n  let hookAction: InstallDecision = \"install\";\n  if (options.skipHook === true) {\n    hookAction = \"skip\";\n  } else if (interactive) {\n    hookAction = await confirm(\n      out,\n      \"Install the SessionEnd hook so capture runs at the end of every Claude Code session?\",\n      true,\n    );\n  }\n\n  let hookResultLine = \"\";\n  if (hookAction === \"install\") {\n    const res = await runHookInstall({\n      settingsPath: options.settingsPath,\n      hookScriptPath: options.hookScriptPath,\n      stableHooksDir: options.stableHooksDir,\n    });\n    if (res.exitCode !== 0) {\n      stepActive(out, `SessionEnd hook: ${res.stderr.trim()}`);\n      return {\n        stdout: \"\",\n        stderr: res.stderr,\n        exitCode: res.exitCode,\n      };\n    }\n    hookResultLine = res.stdout.includes(\"already installed\")\n      ? `SessionEnd hook ${DIM}already installed${RST}`\n      : `SessionEnd hook installed`;\n    stepDone(out, hookResultLine);\n  } else {\n    stepSkipped(out, `SessionEnd hook ${DIM}skipped${RST}`);\n  }\n  out.write(BAR + \"\\n\");\n\n  // Step 3: install the guides.\n  let guidesAction: InstallDecision = \"install\";\n  if (options.skipGuides === true) {\n    guidesAction = \"skip\";\n  } else if (interactive) {\n    guidesAction = await confirm(\n      out,\n      \"Install the codealmanac usage guides into ~/.claude/ and import them from CLAUDE.md?\",\n      true,\n    );\n  }\n\n  let guidesSummary: string;\n  if (guidesAction === \"install\") {\n    try {\n      const summary = await installGuides({\n        claudeDir: options.claudeDir ?? path.join(homedir(), \".claude\"),\n        guidesDir: options.guidesDir ?? resolveGuidesDir(),\n      });\n      guidesSummary = summary.anyChanges\n        ? `Guides installed (${summary.filesWritten.join(\", \")})`\n        : `Guides ${DIM}already installed${RST}`;\n      stepDone(out, guidesSummary);\n    } catch (err: unknown) {\n      const msg = err instanceof Error ? err.message : String(err);\n      return {\n        stdout: \"\",\n        stderr: `almanac: guide install failed: ${msg}\\n`,\n        exitCode: 1,\n      };\n    }\n  } else {\n    stepSkipped(out, `Guides ${DIM}skipped${RST}`);\n  }\n  out.write(BAR + \"\\n\");\n\n  stepDone(out, `${BLUE}Setup complete${RST}`);\n  out.write(\"\\n\");\n\n  // Detect whether the current working directory is inside a repo that\n  // already has a wiki with pages. This fixes Bug #6 from\n  // codealmanac-known-bugs.md: Engineer B clones a repo that already has\n  // `.almanac/pages/` (committed by Engineer A) and gets told to run\n  // `almanac bootstrap`, which is wrong — the wiki already exists.\n  const existingPageCount = countExistingPages(process.cwd());\n  printNextSteps(out, existingPageCount);\n\n  return { stdout: \"\", stderr: \"\", exitCode: 0 };\n}\n\n// ─── Auth reporting ──────────────────────────────────────────────────\n\nasync function safeCheckAuth(\n  spawnCli?: SpawnCliFn,\n): Promise<ClaudeAuthStatus> {\n  try {\n    return await checkClaudeAuth(spawnCli);\n  } catch {\n    return { loggedIn: false };\n  }\n}\n\nfunction reportAuth(\n  out: NodeJS.WritableStream,\n  auth: ClaudeAuthStatus,\n): void {\n  if (auth.loggedIn) {\n    const who = auth.email ?? \"Claude account\";\n    const plan =\n      auth.subscriptionType !== undefined\n        ? ` ${DIM}(${auth.subscriptionType})${RST}`\n        : \"\";\n    stepDone(out, `Claude auth: ${WHITE_BOLD}${who}${RST}${plan}`);\n    return;\n  }\n  if (\n    process.env.ANTHROPIC_API_KEY !== undefined &&\n    process.env.ANTHROPIC_API_KEY.length > 0\n  ) {\n    stepDone(out, `Claude auth: ${WHITE_BOLD}ANTHROPIC_API_KEY${RST} set`);\n    return;\n  }\n  // Not blocking — just report and show the two paths.\n  stepActive(out, `Claude auth: ${DIM}not signed in${RST}`);\n  for (const line of UNAUTHENTICATED_MESSAGE.split(\"\\n\")) {\n    out.write(`  ${DIM}\\u2502   ${line}${RST}\\n`);\n  }\n}\n\n// ─── Guide installation ──────────────────────────────────────────────\n\ninterface InstallGuidesOptions {\n  claudeDir: string;\n  guidesDir: string;\n}\n\ninterface InstallGuidesResult {\n  anyChanges: boolean;\n  filesWritten: string[];\n}\n\n/**\n * Copy the two guide files into `~/.claude/` and append an `@import`\n * line to `~/.claude/CLAUDE.md`. Every step is idempotent:\n *\n *   - Guide files are compared by bytes before we write. If the content\n *     matches the bundled version, we skip (so `setup` doesn't cause a\n *     spurious mtime bump on every invocation).\n *   - The import line is appended only if `CLAUDE.md` doesn't already\n *     contain the exact `@~/.claude/codealmanac.md` token on a line by\n *     itself. We don't try to parse the file — any mention of the token\n *     on a non-comment line is treated as \"already present\".\n *\n * Returns a summary the caller uses to decide whether to say \"installed\"\n * or \"already installed\" in the TUI.\n */\nasync function installGuides(\n  options: InstallGuidesOptions,\n): Promise<InstallGuidesResult> {\n  await mkdir(options.claudeDir, { recursive: true });\n\n  const srcMini = path.join(options.guidesDir, \"mini.md\");\n  const srcRef = path.join(options.guidesDir, \"reference.md\");\n  if (!existsSync(srcMini)) {\n    throw new Error(`missing bundled guide: ${srcMini}`);\n  }\n  if (!existsSync(srcRef)) {\n    throw new Error(`missing bundled guide: ${srcRef}`);\n  }\n\n  const destMini = path.join(options.claudeDir, \"codealmanac.md\");\n  const destRef = path.join(options.claudeDir, \"codealmanac-reference.md\");\n\n  const miniChanged = await copyIfChanged(srcMini, destMini);\n  const refChanged = await copyIfChanged(srcRef, destRef);\n\n  const claudeMd = path.join(options.claudeDir, \"CLAUDE.md\");\n  const importChanged = await ensureImport(claudeMd);\n\n  const filesWritten: string[] = [];\n  if (miniChanged) filesWritten.push(\"codealmanac.md\");\n  if (refChanged) filesWritten.push(\"codealmanac-reference.md\");\n  if (importChanged) filesWritten.push(\"CLAUDE.md\");\n\n  return { anyChanges: filesWritten.length > 0, filesWritten };\n}\n\nasync function copyIfChanged(src: string, dest: string): Promise<boolean> {\n  const srcBytes = await readFile(src);\n  if (existsSync(dest)) {\n    try {\n      const destBytes = await readFile(dest);\n      if (srcBytes.equals(destBytes)) return false;\n    } catch {\n      // Fall through to write.\n    }\n  }\n  await copyFile(src, dest);\n  return true;\n}\n\n/** The exact import line we manage. Changing this requires updating\n * uninstall too. */\nexport const IMPORT_LINE = \"@~/.claude/codealmanac.md\";\n\n/**\n * Append the import line to `~/.claude/CLAUDE.md` if it isn't already\n * present. Creates the file if absent. Returns true when we wrote, false\n * when the line was already there.\n *\n * We match on `@~/.claude/codealmanac.md` appearing on any non-empty\n * line (trimmed). This catches both the bare line we write and any\n * user-edited variant (comments, trailing whitespace). We deliberately\n * do NOT try to repair a user who deleted the newline — that's their\n * file to shape.\n */\nasync function ensureImport(claudeMdPath: string): Promise<boolean> {\n  let existing = \"\";\n  if (existsSync(claudeMdPath)) {\n    existing = await readFile(claudeMdPath, \"utf8\");\n  }\n  if (hasImportLine(existing)) return false;\n\n  const sep =\n    existing.length === 0 ? \"\" : existing.endsWith(\"\\n\") ? \"\\n\" : \"\\n\\n\";\n  const body = `${existing}${sep}${IMPORT_LINE}\\n`;\n  await writeFile(claudeMdPath, body, \"utf8\");\n  return true;\n}\n\nexport function hasImportLine(contents: string): boolean {\n  // Match line-starts-with-token rather than exact-line equality so a\n  // user who annotated the import line (`@~/.claude/codealmanac.md #\n  // codealmanac`) doesn't cause us to re-append a duplicate below.\n  // The trailing-character check rules out accidental matches on a\n  // longer line like `@~/.claude/codealmanac.md-extra`.\n  const lines = contents.split(/\\r?\\n/).map((l) => l.trim());\n  return lines.some((line) => {\n    if (line === IMPORT_LINE) return true;\n    if (!line.startsWith(IMPORT_LINE)) return false;\n    const next = line[IMPORT_LINE.length];\n    return next === \" \" || next === \"\\t\";\n  });\n}\n\n// ─── Interactive prompt ──────────────────────────────────────────────\n\ntype InstallDecision = \"install\" | \"skip\";\n\n/**\n * Minimal `[Y/n]` prompt. No raw mode, no cursor — just readline. The\n * MCP setup uses a fancy arrow-key TUI for multi-choice; we only have\n * binary decisions here, so a line-reader prompt is clearer and doesn't\n * fight with the step-indicator rendering above it.\n */\nfunction confirm(\n  out: NodeJS.WritableStream,\n  question: string,\n  defaultYes: boolean,\n): Promise<InstallDecision> {\n  return new Promise((resolve) => {\n    const hint = defaultYes ? \"[Y/n]\" : \"[y/N]\";\n    out.write(`  ${BLUE}\\u25c6${RST}  ${question} ${DIM}${hint}${RST} `);\n\n    let buf = \"\";\n    const onData = (chunk: Buffer): void => {\n      buf += chunk.toString(\"utf8\");\n      const nl = buf.indexOf(\"\\n\");\n      if (nl === -1) return;\n      process.stdin.removeListener(\"data\", onData);\n      process.stdin.pause();\n\n      const answer = buf.slice(0, nl).trim().toLowerCase();\n      const accepted =\n        answer.length === 0\n          ? defaultYes\n          : answer === \"y\" || answer === \"yes\";\n      resolve(accepted ? \"install\" : \"skip\");\n    };\n\n    process.stdin.resume();\n    process.stdin.on(\"data\", onData);\n  });\n}\n\n// ─── Guides path resolution ──────────────────────────────────────────\n\n/**\n * Locate `guides/` relative to the installed package. Mirrors\n * `resolvePromptsDir` from `src/agent/prompts.ts`.\n *\n * Two runtime layouts to handle:\n *\n *   1. **Bundled dist.** `dist/codealmanac.js` → walk one level up →\n *      `guides/`.\n *   2. **Source (tests / tsx).** `src/commands/setup.ts` → walk two\n *      levels up → `guides/`.\n *\n * We also try `createRequire` to resolve the package root from the\n * `codealmanac/package.json` manifest, as a belt-and-suspenders fallback\n * for unusual install layouts (monorepo hoisting, etc.). That path is\n * only exercised when the direct walk-up fails.\n */\nexport function resolveGuidesDir(): string {\n  const here = path.dirname(fileURLToPath(import.meta.url));\n  const candidates = [\n    path.resolve(here, \"..\", \"guides\"), // dist layout\n    path.resolve(here, \"..\", \"..\", \"guides\"), // src layout\n    path.resolve(here, \"..\", \"..\", \"..\", \"guides\"),\n  ];\n  for (const dir of candidates) {\n    if (looksLikeGuidesDir(dir)) return dir;\n  }\n  // Fallback: resolve via the package.json of the currently-running\n  // codealmanac. createRequire lets us ask Node's resolver rather than\n  // guessing at directory layouts.\n  try {\n    const require = createRequire(import.meta.url);\n    const pkgJson = require.resolve(\"codealmanac/package.json\");\n    const guides = path.join(path.dirname(pkgJson), \"guides\");\n    if (looksLikeGuidesDir(guides)) return guides;\n  } catch {\n    // Ignore — we'll throw with the candidate list below.\n  }\n  throw new Error(\n    \"could not locate bundled guides/ directory. Tried:\\n\" +\n      candidates.map((c) => `  - ${c}`).join(\"\\n\"),\n  );\n}\n\nfunction looksLikeGuidesDir(dir: string): boolean {\n  return existsSync(path.join(dir, \"mini.md\"));\n}\n","import { spawn, spawnSync, type ChildProcess } from \"node:child_process\";\nimport { createRequire } from \"node:module\";\nimport { dirname, join } from \"node:path\";\n\n/**\n * Claude auth gate — accepts either an active Claude subscription login\n * OR an `ANTHROPIC_API_KEY` environment variable.\n *\n * Claude Code owns subscription OAuth credentials. Users who are logged in\n * via `claude auth login --claudeai` should be able to run bootstrap/capture\n * without exporting an API key. Conversely, users on pay-per-token API keys\n * shouldn't be required to go through the OAuth flow.\n *\n * Current Claude Agent SDK packages no longer ship the old private\n * `cli.js` entrypoint, so the primary probe is the public Claude Code CLI:\n * `claude auth status --json`. We keep the SDK `cli.js` probe as a legacy\n * fallback for older SDK layouts.\n */\n\nexport interface ClaudeAuthStatus {\n  loggedIn: boolean;\n  email?: string;\n  subscriptionType?: string;\n  authMethod?: string;\n}\n\nexport interface SpawnedProcess {\n  stdout: { on: (event: \"data\", cb: (data: Buffer | string) => void) => void };\n  stderr: { on: (event: \"data\", cb: (data: Buffer | string) => void) => void };\n  on: (event: \"close\" | \"error\", cb: (arg: number | null | Error) => void) => void;\n  kill: (signal?: string) => void;\n}\n\n/**\n * The subprocess spawner is injectable so tests can replace it with a\n * fake that emits canned JSON without touching the filesystem.\n */\nexport type SpawnCliFn = (args: string[]) => SpawnedProcess;\n\nconst AUTH_TIMEOUT_MS = 10_000;\n\n/**\n * Resolve the installed Claude Code executable from PATH. The Agent SDK can\n * accept this path via `pathToClaudeCodeExecutable`, and the auth probe uses\n * the same binary so CodeAlmanac agrees with `claude auth status`.\n */\nexport function resolveClaudeExecutable(): string | undefined {\n  const result = spawnSync(\"sh\", [\"-lc\", \"command -v claude\"], {\n    encoding: \"utf8\",\n  });\n  if (result.status !== 0) return undefined;\n  const found = result.stdout.trim().split(\"\\n\")[0]?.trim();\n  return found !== undefined && found.length > 0 ? found : undefined;\n}\n\n/**\n * Resolve legacy `cli.js` from older `@anthropic-ai/claude-agent-sdk`\n * installs. SDK 0.2.129+ no longer ships this file; callers must treat\n * failure as expected and fall back to the public `claude` binary.\n */\nfunction resolveCliJsPath(): string {\n  const require = createRequire(import.meta.url);\n  const entry = require.resolve(\"@anthropic-ai/claude-agent-sdk\");\n  return join(dirname(entry), \"cli.js\");\n}\n\n/**\n * Default subprocess spawner for production use — invokes the installed\n * Claude Code CLI.\n */\nexport const defaultSpawnCli: SpawnCliFn = (args: string[]) => {\n  const command = resolveClaudeExecutable() ?? \"claude\";\n  const child = spawn(command, args, {\n    stdio: [\"ignore\", \"pipe\", \"pipe\"],\n  });\n  return child as unknown as SpawnedProcess;\n};\n\nexport const legacySdkSpawnCli: SpawnCliFn = (args: string[]) => {\n  const cliPath = resolveCliJsPath();\n  const child = spawn(process.execPath, [cliPath, ...args], {\n    stdio: [\"ignore\", \"pipe\", \"pipe\"],\n  });\n  return child as unknown as SpawnedProcess;\n};\n\n/**\n * Check whether the user is authenticated via Claude subscription OAuth.\n *\n * Spawns `claude auth status --json`, falling back to the legacy SDK CLI\n * layout when available. On any failure (spawn error, non-JSON stdout,\n * non-zero exit, timeout) we return `{ loggedIn: false }` rather than\n * propagating the error — the caller will fall back to the\n * `ANTHROPIC_API_KEY` path and, if that's also missing, produce a clean\n * two-option error message.\n *\n * The 10s timeout guards against the CLI hanging on a broken network or\n * keychain prompt. In practice `auth status` is a cheap local read.\n */\nexport async function checkClaudeAuth(\n  spawnCli: SpawnCliFn = defaultSpawnCli,\n): Promise<ClaudeAuthStatus> {\n  if (spawnCli === defaultSpawnCli) {\n    const status = await checkClaudeAuthWith(defaultSpawnCli);\n    if (status.loggedIn) return status;\n    return await checkClaudeAuthWith(legacySdkSpawnCli);\n  }\n  return await checkClaudeAuthWith(spawnCli);\n}\n\nasync function checkClaudeAuthWith(\n  spawnCli: SpawnCliFn,\n): Promise<ClaudeAuthStatus> {\n  let child: SpawnedProcess;\n  try {\n    child = spawnCli([\"auth\", \"status\", \"--json\"]);\n  } catch {\n    return { loggedIn: false };\n  }\n\n  return new Promise<ClaudeAuthStatus>((resolve) => {\n    let stdout = \"\";\n    let stderr = \"\";\n    let settled = false;\n\n    const settle = (value: ClaudeAuthStatus): void => {\n      if (settled) return;\n      settled = true;\n      clearTimeout(timer);\n      resolve(value);\n    };\n\n    const timer = setTimeout(() => {\n      try {\n        child.kill(\"SIGTERM\");\n      } catch {\n        // Kill can fail if the process already exited; nothing we can do.\n      }\n      settle({ loggedIn: false });\n    }, AUTH_TIMEOUT_MS);\n\n    child.stdout.on(\"data\", (data) => {\n      stdout += data.toString();\n    });\n    child.stderr.on(\"data\", (data) => {\n      stderr += data.toString();\n    });\n\n    child.on(\"error\", () => {\n      settle({ loggedIn: false });\n    });\n\n    child.on(\"close\", (code) => {\n      // The SDK writes `{\"loggedIn\": false, ...}` to stdout with a zero\n      // exit code when the user isn't signed in, so we only reject on\n      // non-zero + empty stdout. An empty stdout with zero exit (shouldn't\n      // happen in practice) also fails safely to `loggedIn: false`.\n      if (code !== 0 && stdout.trim().length === 0) {\n        // `stderr` isn't surfaced to the user here — the caller's error\n        // message covers both auth paths — but it would be captured by\n        // `stderr` if we ever wanted to log it for debugging.\n        void stderr;\n        settle({ loggedIn: false });\n        return;\n      }\n      try {\n        settle(parseClaudeAuthStatus(stdout.trim()));\n      } catch {\n        settle({ loggedIn: false });\n      }\n    });\n  });\n}\n\nfunction parseClaudeAuthStatus(raw: string): ClaudeAuthStatus {\n  const parsed = JSON.parse(raw) as Record<string, unknown>;\n  const loggedIn = parsed.loggedIn === true;\n  const out: ClaudeAuthStatus = { loggedIn };\n  if (typeof parsed.email === \"string\") out.email = parsed.email;\n  if (typeof parsed.subscriptionType === \"string\") {\n    out.subscriptionType = parsed.subscriptionType;\n  }\n  if (typeof parsed.authMethod === \"string\") {\n    out.authMethod = parsed.authMethod;\n  }\n  return out;\n}\n\n/**\n * Human-readable error when neither auth path is available. The text is\n * deliberately verbose — users hitting this wall for the first time\n * deserve both options in front of them, not a terse hint.\n */\nexport const UNAUTHENTICATED_MESSAGE =\n  \"not authenticated to Claude.\\n\\n\" +\n  \"Option 1 — use your Claude subscription (Pro/Max):\\n\" +\n  \"  claude auth login --claudeai\\n\\n\" +\n  \"Option 2 — use a pay-per-token API key:\\n\" +\n  \"  Get one at https://console.anthropic.com\\n\" +\n  \"  export ANTHROPIC_API_KEY=sk-ant-...\\n\\n\" +\n  \"Verify with: claude auth status\";\n\n/**\n * Assert that at least one auth path is satisfied. Prefers subscription\n * auth (fewer surprises for Claude Pro/Max users) but accepts\n * `ANTHROPIC_API_KEY` as a fallback. 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Not \"loggedIn\"\n    // in the OAuth sense, but the SDK will pick up the env var and\n    // succeed — so we return a status that tells bootstrap/capture the\n    // gate is open.\n    return { loggedIn: true, authMethod: \"apiKey\" };\n  }\n  const err = new Error(UNAUTHENTICATED_MESSAGE);\n  (err as { code?: string }).code = \"CLAUDE_AUTH_MISSING\";\n  throw err;\n}\n\n// Internal re-export — helps keep the public type surface minimal while\n// still letting tests import the `ChildProcess` shape when needed.\nexport type { ChildProcess };\n","import { execFile } from \"node:child_process\";\nimport { createRequire } from \"node:module\";\nimport { homedir } from \"node:os\";\nimport path from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\n\n/**\n * Return the directory of the currently-running codealmanac install by\n * walking up from this module's file to the nearest `package.json` whose\n * `name` is `codealmanac`. 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package/dist/chunk-AXFPUHBN.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/update/config.ts","../src/update/semver.ts","../src/update/state.ts","../src/update/check.ts"],"sourcesContent":["import { mkdir, readFile, rename, writeFile } from \"node:fs/promises\";\nimport { dirname, join } from \"node:path\";\n\nimport { getGlobalAlmanacDir } from \"../paths.js\";\n\n/**\n * `~/.almanac/config.json` — global, cross-wiki configuration. Today\n * the only field is `update_notifier` (on/off toggle for the pre-command\n * banner); designed as an object so we can add more knobs without\n * breaking users who already have the file on disk.\n *\n * Missing or malformed → defaults. Same tolerance as `UpdateState`:\n * the CLI must not be able to fail because this file drifted.\n */\nexport interface GlobalConfig {\n  /** When `false`, suppress the pre-command update-nag banner. Default: true. */\n  update_notifier: boolean;\n}\n\nexport function defaultConfig(): GlobalConfig {\n  return { update_notifier: true };\n}\n\nexport function getConfigPath(): string {\n  return join(getGlobalAlmanacDir(), \"config.json\");\n}\n\nexport async function readConfig(path?: string): Promise<GlobalConfig> {\n  const file = path ?? getConfigPath();\n  let raw: string;\n  try {\n    raw = await readFile(file, \"utf8\");\n  } catch {\n    return defaultConfig();\n  }\n  const trimmed = raw.trim();\n  if (trimmed.length === 0) return defaultConfig();\n  try {\n    const parsed = JSON.parse(trimmed) as Partial<GlobalConfig>;\n    return {\n      update_notifier:\n        typeof parsed.update_notifier === \"boolean\"\n          ? parsed.update_notifier\n          : true,\n    };\n  } catch {\n    return defaultConfig();\n  }\n}\n\nexport async function writeConfig(\n  config: GlobalConfig,\n  path?: string,\n): Promise<void> {\n  const file = path ?? getConfigPath();\n  await mkdir(dirname(file), { recursive: true });\n  const body = `${JSON.stringify(config, null, 2)}\\n`;\n  const tmp = `${file}.tmp`;\n  await writeFile(tmp, body, \"utf8\");\n  await rename(tmp, file);\n}\n","/**\n * Tiny semver comparator for update-version checks. We do NOT take a\n * dependency on `semver` — we only need a subset (compare two\n * well-formed `x.y.z` strings, optionally with a pre-release tag), and\n * adding a 400KB install for six lines of logic isn't a good trade.\n *\n * What we handle:\n *   - Numeric `major.minor.patch` with or without a `-pre` tag.\n *   - Missing parts default to 0 (`1.2` → `1.2.0`).\n *   - Leading `v` is stripped.\n *\n * What we don't handle:\n *   - Build metadata (`+sha.abcd`) — ignored.\n *   - Pre-release precedence rules beyond \"tagged < untagged at same\n *     numeric triple\". Good enough for codealmanac's linear release\n *     cadence; if we ever publish `-rc.1` vs `-rc.2` and care which\n *     comes first, revisit.\n */\n\ninterface Parsed {\n  major: number;\n  minor: number;\n  patch: number;\n  /** Empty string = no pre-release (counts as \"higher\" than a pre-release at the same triple). */\n  pre: string;\n}\n\nfunction parse(v: string): Parsed | null {\n  const trimmed = v.trim().replace(/^v/i, \"\");\n  // Strip build metadata (everything from the first `+`).\n  const noBuild = trimmed.split(\"+\")[0] ?? \"\";\n  // Split off pre-release tag.\n  const dashAt = noBuild.indexOf(\"-\");\n  const core = dashAt === -1 ? noBuild : noBuild.slice(0, dashAt);\n  const pre = dashAt === -1 ? \"\" : noBuild.slice(dashAt + 1);\n\n  const parts = core.split(\".\").map((p) => Number.parseInt(p, 10));\n  if (parts.length === 0 || parts.some((n) => !Number.isFinite(n) || n < 0)) {\n    return null;\n  }\n  return {\n    major: parts[0] ?? 0,\n    minor: parts[1] ?? 0,\n    patch: parts[2] ?? 0,\n    pre,\n  };\n}\n\n/**\n * Return `true` iff `latest` > `installed`. Returns `false` on unparseable\n * input rather than throwing — a bad version string must not be able to\n * crash the CLI's every-command banner path.\n */\nexport function isNewer(latest: string, installed: string): boolean {\n  const a = parse(latest);\n  const b = parse(installed);\n  if (a === null || b === null) return false;\n\n  if (a.major !== b.major) return a.major > b.major;\n  if (a.minor !== b.minor) return a.minor > b.minor;\n  if (a.patch !== b.patch) return a.patch > b.patch;\n\n  // Same numeric triple. Empty pre-release beats a tagged pre-release\n  // (1.2.3 > 1.2.3-rc.1). Two tagged pre-releases compare lexically.\n  if (a.pre === b.pre) return false;\n  if (a.pre === \"\" && b.pre !== \"\") return true;\n  if (a.pre !== \"\" && b.pre === \"\") return false;\n  return a.pre > b.pre;\n}\n","import { mkdir, readFile, rename, writeFile } from \"node:fs/promises\";\nimport { dirname, join } from \"node:path\";\n\nimport { getGlobalAlmanacDir } from \"../paths.js\";\n\n/**\n * `~/.almanac/update-state.json` — the only piece of persistent state\n * the update system owns. Written by the background check worker (once\n * per 24h) and by `almanac update` / `almanac update --dismiss`; read\n * by the pre-command banner, `almanac doctor`, and the check path to\n * decide whether 24h have elapsed since the last check.\n *\n * Format is a single flat object with no schema version: fields are\n * only ever added (and read with defaults), never removed or reshaped.\n * If we ever need a breaking migration, the file is trivially\n * regenerable — the worst case is a single extra registry round-trip.\n *\n * Corruption handling: every read path tolerates missing or malformed\n * JSON as \"no state\" (empty defaults). We never propagate a parse\n * error up to the CLI banner, because a corrupt state file must not\n * be able to break every invocation.\n */\nexport interface UpdateState {\n  /** Unix epoch seconds of the last registry query. */\n  last_check_at: number;\n  /** The codealmanac version running when we last wrote state. */\n  installed_version: string;\n  /** The newest version the registry has published at last check. */\n  latest_version: string;\n  /** Versions the user dismissed via `almanac update --dismiss`. */\n  dismissed_versions: string[];\n  /**\n   * Epoch seconds of the last registry fetch attempt that FAILED. Used\n   * by the check scheduler to back off (one failure shouldn't hammer\n   * the registry on every command) — reads tolerate a missing field.\n   */\n  last_fetch_failed_at?: number;\n}\n\nexport function emptyState(): UpdateState {\n  return {\n    last_check_at: 0,\n    installed_version: \"\",\n    latest_version: \"\",\n    dismissed_versions: [],\n  };\n}\n\nexport function getStatePath(): string {\n  return join(getGlobalAlmanacDir(), \"update-state.json\");\n}\n\n/**\n * Read the state file. Missing, empty, or malformed → empty state.\n * We deliberately swallow all errors here: the update system is\n * best-effort, and a read failure must not break any command.\n */\nexport async function readState(path?: string): Promise<UpdateState> {\n  const file = path ?? getStatePath();\n  let raw: string;\n  try {\n    raw = await readFile(file, \"utf8\");\n  } catch {\n    return emptyState();\n  }\n  const trimmed = raw.trim();\n  if (trimmed.length === 0) return emptyState();\n  try {\n    const parsed = JSON.parse(trimmed) as Partial<UpdateState>;\n    return {\n      last_check_at:\n        typeof parsed.last_check_at === \"number\" ? parsed.last_check_at : 0,\n      installed_version:\n        typeof parsed.installed_version === \"string\"\n          ? parsed.installed_version\n          : \"\",\n      latest_version:\n        typeof parsed.latest_version === \"string\" ? parsed.latest_version : \"\",\n      dismissed_versions: Array.isArray(parsed.dismissed_versions)\n        ? parsed.dismissed_versions.filter(\n            (v): v is string => typeof v === \"string\" && v.length > 0,\n          )\n        : [],\n      last_fetch_failed_at:\n        typeof parsed.last_fetch_failed_at === \"number\"\n          ? parsed.last_fetch_failed_at\n          : undefined,\n    };\n  } catch {\n    return emptyState();\n  }\n}\n\n/**\n * Write the state file atomically (tmp + rename). Makes the concurrent\n * \"two commands ran their update checks at once\" race safe — one rename\n * wins, the other is dropped. Creates `~/.almanac/` if missing.\n */\nexport async function writeState(\n  state: UpdateState,\n  path?: string,\n): Promise<void> {\n  const file = path ?? getStatePath();\n  await mkdir(dirname(file), { recursive: true });\n  const body = `${JSON.stringify(state, null, 2)}\\n`;\n  const tmp = `${file}.tmp`;\n  await writeFile(tmp, body, \"utf8\");\n  await rename(tmp, file);\n}\n","import { createRequire } from \"node:module\";\n\nimport { readState, writeState, type UpdateState } from \"./state.js\";\n\n/**\n * Background update check. Called by the detached worker (`--internal-\n * check-updates`) after any normal command exits; also reachable via\n * `almanac update --check` for a synchronous \"am I current?\" readout.\n *\n * Contract:\n *   - Reads `~/.almanac/update-state.json` if present.\n *   - If the last check is older than `cacheSeconds` (default 24h), queries\n *     the npm registry for `codealmanac`'s `dist-tags.latest` and writes a\n *     new state file.\n *   - Network timeout is 3s: registry flakes must not prevent a check\n *     cycle on the next invocation.\n *   - All errors are swallowed; the returned state is always a usable\n *     snapshot (possibly the old one when the fetch failed).\n *\n * The fetch function is injectable. Tests pass a stub; production uses\n * the native `globalThis.fetch`. No dependency on `node-fetch`.\n */\n\nexport interface CheckOptions {\n  /** Override the installed version (prod: read from package.json). */\n  installedVersion?: string;\n  /** Cache window; no registry call if last check is newer than this. */\n  cacheSeconds?: number;\n  /** Network timeout in ms (default 3000). */\n  timeoutMs?: number;\n  /** Clock. Tests inject to make \"24h ago\" deterministic. */\n  now?: () => number;\n  /** Fetch function (default `globalThis.fetch`). */\n  fetchFn?: typeof fetch;\n  /** Override the state file path (tests point it at a tmpdir). */\n  statePath?: string;\n  /** Force a registry call regardless of the cache. Used by `update --check`. */\n  force?: boolean;\n}\n\nexport interface CheckResult {\n  /** The state after the check (either refreshed or unchanged). */\n  state: UpdateState;\n  /** True when a registry call actually happened this run. */\n  fetched: boolean;\n  /** True when the registry call failed (network / timeout / parse). */\n  fetchFailed: boolean;\n}\n\nconst DEFAULT_CACHE_SECONDS = 24 * 60 * 60;\nconst DEFAULT_TIMEOUT_MS = 3000;\nconst REGISTRY_URL = \"https://registry.npmjs.org/codealmanac\";\n\nexport async function checkForUpdate(\n  opts: CheckOptions = {},\n): Promise<CheckResult> {\n  const now = opts.now ?? (() => Math.floor(Date.now() / 1000));\n  const cacheSeconds = opts.cacheSeconds ?? DEFAULT_CACHE_SECONDS;\n  const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;\n  const fetchFn = opts.fetchFn ?? globalThis.fetch;\n  const installed = opts.installedVersion ?? readInstalledVersion();\n\n  const state = await readState(opts.statePath);\n\n  // Cache gate. Skip the registry call when the previous check is\n  // fresh enough, unless `force: true` (used by `update --check` so\n  // the user can see real-time status without waiting out the window).\n  if (\n    !opts.force &&\n    state.last_check_at > 0 &&\n    now() - state.last_check_at < cacheSeconds\n  ) {\n    return { state, fetched: false, fetchFailed: false };\n  }\n\n  // Query the registry with a hard timeout. `AbortController` is the\n  // idiomatic Node 20+ way to bound a fetch; `setTimeout` fires abort,\n  // `clearTimeout` cancels if fetch resolves first.\n  let latest: string | null = null;\n  let failed = false;\n  try {\n    const ac = new AbortController();\n    const timer = setTimeout(() => ac.abort(), timeoutMs);\n    try {\n      const res = await fetchFn(REGISTRY_URL, {\n        signal: ac.signal,\n        headers: { accept: \"application/json\" },\n      });\n      if (!res.ok) {\n        failed = true;\n      } else {\n        const body = (await res.json()) as {\n          [\"dist-tags\"]?: { latest?: unknown };\n        };\n        const tag = body[\"dist-tags\"]?.latest;\n        if (typeof tag === \"string\" && tag.length > 0) {\n          latest = tag;\n        } else {\n          failed = true;\n        }\n      }\n    } finally {\n      clearTimeout(timer);\n    }\n  } catch {\n    failed = true;\n  }\n\n  if (failed || latest === null) {\n    // Record the failure but DON'T clobber the previous latest_version —\n    // an offline check shouldn't make us forget that 0.1.6 is out.\n    const next: UpdateState = {\n      ...state,\n      // We still bump last_check_at on a failed attempt; without this,\n      // every subsequent command would re-try the registry. A one-shot\n      // retry on the next invocation is enough; sustained failure gets\n      // retried on the 24h cadence like a success.\n      last_check_at: now(),\n      installed_version: installed,\n      last_fetch_failed_at: now(),\n    };\n    try {\n      await writeState(next, opts.statePath);\n    } catch {\n      // Even the state write failed (permissions, disk full). Return\n      // whatever we have — the CLI doesn't care.\n    }\n    return { state: next, fetched: true, fetchFailed: true };\n  }\n\n  const next: UpdateState = {\n    last_check_at: now(),\n    installed_version: installed,\n    latest_version: latest,\n    dismissed_versions: state.dismissed_versions,\n    // Clear the failure marker on success.\n    last_fetch_failed_at: undefined,\n  };\n  try {\n    await writeState(next, opts.statePath);\n  } catch {\n    // Silent — same rationale as above.\n  }\n  return { state: next, fetched: true, fetchFailed: false };\n}\n\n/**\n * Read the `version` field from `package.json`. Matches the same\n * lookup strategy as `readPackageVersion` in `cli.ts` and `doctor.ts`;\n * duplicated here to keep the update module self-contained and to\n * avoid a circular import at CLI startup.\n */\nfunction readInstalledVersion(): string {\n  try {\n    const require = createRequire(import.meta.url);\n    const pkg = require(\"../../package.json\") as { version?: unknown };\n    if (typeof pkg.version === \"string\" && pkg.version.length > 0) {\n      return pkg.version;\n    }\n  } catch {\n    // Fall through.\n  }\n  try {\n    const require = createRequire(import.meta.url);\n    const pkg = require(\"../package.json\") as { version?: unknown };\n    if (typeof pkg.version === \"string\" && pkg.version.length > 0) {\n      return pkg.version;\n    }\n  } catch {\n    // Fall through.\n  }\n  return 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