code-gauge 1.14.0 → 3.0.0

package/README.md

@@ -5,7 +5,11 @@
 [![semantic-release](https://img.shields.io/badge/%20%20%F0%9F%93%A6%F0%9F%9A%80-semantic--release-e10079.svg)](https://github.com/semantic-release/semantic-release)
 [![wbfy](https://img.shields.io/badge/wbfy-18.3.0-1e90ff.svg)](https://github.com/WillBooster/shared/tree/main/packages/wbfy)
 
-A command-line tool for measuring code metrics with tree-sitter. It scans a project and reports high-risk files, functions, and React components so you can spot code that is worth refactoring. A [programmatic API](#programmatic-api) is also available.
+A command-line tool that ranks the files of a project by refactoring priority, built for AI-agent
+workflows: an agent asked to "refactor this repository" runs `code-gauge` and starts from the top of
+the list. Measurement uses tree-sitter, and the output is deliberately small — only the metrics that
+tell an agent _what to change_ are measured and reported, so nothing in the output anchors an agent
+toward out-of-scope "improvements". A [programmatic API](#programmatic-api) is also available.
 
 ## Getting started
 
@@ -18,150 +22,135 @@ npm install -g code-gauge
 code-gauge path/to/project
 ```
 
-The CLI scans JavaScript, JSX, TypeScript, TSX, Python, Go, Rust, Java, Ruby, C, and C++ files. By default it skips generated, vendor, test, and tool directories, prints a summary, and lists the highest-risk findings. TypeScript project metrics and React component classification turn on automatically when a `tsconfig.json` is found.
+The CLI scans JavaScript, JSX, TypeScript, TSX, Python, Go, Rust, Java, Ruby, C, and C++ files. By
+default it skips generated, vendor, test, and tool directories and prints the top 10 refactoring
+candidates:
 
-## Options
+```
+Measured 123 files under /path/to/project (code LOC 45678, NCSS 23456, functions 1789)
+
+Refactoring candidates (top 10 of 123):
+1. src/metrics.ts (score 2.87): worst function measure (L120-310) cognitive 42, NCSS 220, nesting 6; duplicated lines 180 (20%, shared with src/other.ts); file NCSS 1240
+...
+```
+
+## Ranking model
 
-| Option                     | Description                                                                 |
-| -------------------------- | --------------------------------------------------------------------------- |
-| `--config <path>`          | Use this config file instead of the auto-detected `code-gauge.config.json`. |
-| `--include-tests`          | Include test files and test directories.                                    |
-| `--tsconfig <path>`        | Use this `tsconfig.json` instead of the auto-detected one.                  |
-| `--max-findings <n>`       | Maximum number of findings to print (default: 20).                          |
-| `--largest-files <n>`      | List the `n` largest files by code LOC (config key: `largestFiles`).        |
-| `--json`                   | Print machine-readable JSON.                                                |
-| `--fail-on-risk`           | Exit with code 1 when any high-risk finding is reported.                    |
-| `--fail-on-error`          | Exit with code 1 when any file or directory cannot be scanned.              |
-| `--<metric>-threshold <n>` | Override a risk threshold (see below).                                      |
+Every file gets a score that is the sum of its repository-relative percentile ranks (each in `[0, 1)`)
+over three dimensions:
 
-## Risk thresholds
+- **Worst-function cognitive complexity** — the SonarSource cognitive-complexity model, the
+  measure of understanding effort with the strongest empirical support among structural metrics.
+- **Duplicated lines** — distinct lines covered by within-file duplicate blocks or cross-file
+  duplicate occurrences (Type-1/2 clones, gapped and near-miss Type-3 clones).
+- **File NCSS** — non-commenting source statements, a comment- and formatting-independent size
+  measure calibrated against PMD's `NcssCount`.
 
-A finding is reported when a measured value is **greater than or equal to** its threshold. Every threshold can be set on the command line (e.g. `--file-loc-threshold 400`) or in a config file; the command line wins over the config file, which wins over the defaults.
+Ranking is relative to the scanned project, so no absolute thresholds are involved: the top of the
+list is worth refactoring first regardless of where any cutoff would sit. Each reported file carries
+the concrete evidence (worst function with location, duplication with partner files, file size) so
+an agent can act on it directly.
 
-`code-gauge` looks for `code-gauge.config.json` by walking up from the target directory (override with `--config`). The following config reproduces every built-in default:
+## Options
+
+| Option                                     | Description                                                                     |
+| ------------------------------------------ | ------------------------------------------------------------------------------- |
+| `--config <path>`                          | Use this config file instead of the auto-detected `code-gauge.config.json`.     |
+| `--top <n>`                                | Number of top-ranked files to report (default: 10).                             |
+| `--include-tests`                          | Include test files and test directories.                                        |
+| `--json`                                   | Print machine-readable JSON.                                                    |
+| `--fail-on-error`                          | Exit with code 1 when any file or directory cannot be scanned.                  |
+| `--duplication-min-tokens <n>`             | Minimum normalized token count for a duplicate region (default 40).             |
+| `--duplication-max-gap-tokens <n>`         | Maximum token gap merged into one gapped clone group; 0 disables (default 30).  |
+| `--duplication-min-similarity-percent <n>` | Minimum similarity percent for near-miss clones; 100 = exact only (default 70). |
+
+## Configuration
+
+`code-gauge` looks for `code-gauge.config.json` by walking up from the target directory (override
+with `--config`). The following config reproduces every built-in default:
 
 ```json
 {
-  "thresholds": {
-    "fileLoc": 500,
-    "functionLoc": 120,
-    "componentLoc": 350,
-    "cognitive": 25,
-    "cyclomatic": 20,
-    "call": 50,
-    "import": 25,
-    "fanOut": 10,
-    "parameter": 8,
-    "duplicateBlock": 2,
-    "duplicationRatioPercent": 30,
-    "crossFileDuplicateBlock": 2,
-    "transitiveDependency": 25,
-    "structuralBreadth": 8,
-    "structuralCoordination": 300,
-    "stateMutation": 50,
-    "duplicateSymbolGroup": 5
-  },
   "duplication": {
     "minTokens": 40,
     "maxGapTokens": 30,
     "minSimilarityPercent": 70
   },
-  "languageThresholds": {
-    "python": { "stateMutation": 90, "structuralCoordination": 350 },
-    "ruby": { "stateMutation": 90, "structuralCoordination": 350 },
-    "react": { "import": 30 }
-  },
-  "maxFindings": 20,
+  "rank": { "top": 10 },
   "includeTests": false,
-  "failOnRisk": false,
   "failOnError": false
 }
 ```
 
-| Threshold                 | CLI flag                                 | Reports when a …                                       |
-| ------------------------- | ---------------------------------------- | ------------------------------------------------------ |
-| `fileLoc`                 | `--file-loc-threshold`                   | file's code LOC is large.                              |
-| `functionLoc`             | `--function-loc-threshold`               | function's physical LOC span is large.                 |
-| `componentLoc`            | `--component-loc-threshold`              | React component's physical LOC span is large.          |
-| `cognitive`               | `--cognitive-threshold`                  | function's cognitive complexity is high.               |
-| `cyclomatic`              | `--cyclomatic-threshold`                 | function's cyclomatic complexity is high.              |
-| `call`                    | `--call-threshold`                       | function makes many calls.                             |
-| `import`                  | `--import-threshold`                     | file has many unique import sources.                   |
-| `fanOut`                  | `--fan-out-threshold`                    | function calls many other in-file functions.           |
-| `parameter`               | `--parameter-threshold`                  | function declares many parameters.                     |
-| `duplicateBlock`          | `--duplicate-block-threshold`            | file contains copy-pasted code blocks.                 |
-| `duplicationRatioPercent` | `--duplication-ratio-percent-threshold`  | large percentage of a file's code lines is duplicated. |
-| `crossFileDuplicateBlock` | `--cross-file-duplicate-block-threshold` | file shares copy-pasted code blocks with other files.  |
-| `transitiveDependency`    | `--transitive-dependency-threshold`      | file transitively reaches many local files.            |
-| `structuralBreadth`       | `--structural-breadth-threshold`         | file coordinates many structural concerns.             |
-| `structuralCoordination`  | `--structural-coordination-threshold`    | file's structural coordination score is high.          |
-| `stateMutation`           | `--state-mutation-threshold`             | file mutates state heavily.                            |
-| `duplicateSymbolGroup`    | `--duplicate-symbol-group-threshold`     | file shares many duplicated symbols with others.       |
-
-### Per-language thresholds
-
-Some metrics distribute very differently by language or file type, so a single global threshold either
-over-flags one language or under-flags another. `languageThresholds` overrides individual thresholds for a
-profile without repeating the whole set. Each file resolves its thresholds as **base → its language profile →
-the `react` profile** (the last applies when the file contains a React component), so later profiles win.
-
-Valid profile keys are `javascript`, `jsx`, `typescript`, `tsx`, `python`, `go`, `rust`, `java`, `ruby`, `c`,
-`cpp`, and `react`. Built-in
-overrides raise `stateMutation` and `structuralCoordination` for Python and Ruby (every binding is an
-assignment, so these run far higher than in TypeScript) and raise `import` for React files (which pull in
-many components).
-Anything you specify is merged on top of the built-in overrides, so `{ "python": { "stateMutation": 8 } }`
-restores the global value for Python while keeping the other built-in adjustments.
-
-```json
-{
-  "languageThresholds": {
-    "python": { "stateMutation": 120 },
-    "react": { "componentLoc": 400, "import": 35 }
-  }
-}
-```
-
-Command-line `--<metric>-threshold` flags set the global base only; use the config file for per-language tuning.
+The command line wins over the config file, which wins over the defaults. Unknown settings are
+rejected so stale configuration fails loudly.
 
 ### Duplication detection settings
 
-The `duplication` config section (or the `--duplication-min-tokens`, `--duplication-max-gap-tokens`, and `--duplication-min-similarity-percent` flags) tunes how clones are detected rather than when they are reported:
+The `duplication` section tunes how clones are detected:
 
-- `minTokens` (default 40): minimum normalized token count for a region to count as a duplicate. Raise it to report only substantial copies; lower it to catch small ones.
-- `maxGapTokens` (default 30): copies edited in one spot split into two exact matches around the edit; adjacent matches separated by at most this many tokens are merged back into a single gapped (Type-3) clone group. `0` disables merging. Applies to within-file detection only; cross-file matching compares whole candidates. Merging changes only the grouping, not the counting: each matched fragment still counts toward `duplicateBlock`, so an edited two-fragment pair keeps counting 2.
-- `minSimilarityPercent` (default 70): blocks the exact pipeline misses are additionally compared by similarity (n-gram filtration, then token-level longest-common-subsequence verification, following NIL and NiCad), so a near-miss (Type-3) clone with scattered small edits is still reported when both blocks are at least this similar and share more than half of their content-bearing tokens (names and literal values). `100` disables near-miss detection and reports exact (Type-1/2) matches plus gapped merges only. Applies to within-file detection only; literal-dense (data-table) blocks never near-miss match. A near-miss occurrence counts all of its code lines (edited lines included) toward `duplicateLineCount`, because the whole fragment is the clone.
+- `minTokens` (default 40): minimum normalized token count for a region to count as a duplicate.
+  Raise it to report only substantial copies; lower it to catch small ones.
+- `maxGapTokens` (default 30): copies edited in one spot split into two exact matches around the
+  edit; adjacent matches separated by at most this many tokens are merged back into a single gapped
+  (Type-3) clone group. `0` disables merging. Applies to within-file detection and to cross-file
+  matching alike.
+- `minSimilarityPercent` (default 70): blocks the exact pipeline misses are additionally compared by
+  similarity (n-gram filtration, then token-level longest-common-subsequence verification, following
+  NIL and NiCad), so a near-miss (Type-3) clone with scattered small edits is still reported when
+  both blocks are at least this similar and share more than half of their content-bearing tokens.
+  `100` disables near-miss detection. Applies to within-file detection only.
 
-Custom detection settings are measured by the TypeScript backend; the native backend implements the defaults only.
+Custom detection settings are measured by the TypeScript backend; the native backend implements the
+defaults only.
 
 ## Metrics
 
+`measureCode` reports, per file:
+
 - Physical LOC, code lines, comment-only lines, and blank lines
-- Function and class counts
-- Cyclomatic and cognitive complexity (per function and maximum), following the SonarSource cognitive-complexity specification (except its recursion increment, which is not counted) and cross-validated against PMD's Java rules
-- NCSS (non-commenting source statements, per function and per file), calibrated against PMD's `NcssCount` rule for Java and generalized to every supported language; unlike PMD, package and import declarations count (PMD counts them only with `NcssOption.COUNT_IMPORTS`), and statement-shaped content is counted uniformly in expression positions too (PMD's visitor never descends into lambdas or anonymous classes passed as call arguments, switch-expression bodies, or expression-bodied arrow cases)
-- Nesting depth
-- Intra-file call graph metrics: call counts, fan-in/fan-out, recursion, call depth, and parameter counts
-- Within-file duplication: copy-pasted blocks and statement runs matched on normalized tokens (identifiers anonymized consistently, literals by kind, and literal-dense data tables excluded unless their values also match), with adjacent matches around a small edit merged into gapped (Type-3) clone groups, plus duplicated line count and ratio
-- Cross-file duplication: copy-pasted blocks shared between files, matched with the same normalization and reported as groups with their file locations
-- File coupling (imports/exports) and cohesion (shared function identifiers)
-- Architecture metrics: transitive local dependencies, structural coordination and breadth, state mutation, and cross-file duplicate symbols
-- TypeScript type-shape metrics: annotations, aliases, interfaces, generics, unions, intersections, assertions, and conditional types
-- Halstead metrics and the maintainability index
+- Per-function cognitive complexity (following the SonarSource specification, except its recursion
+  increment, which is not counted; cross-validated against PMD's Java rules), plus the file-level
+  total and maximum
+- Per-function and per-file NCSS (non-commenting source statements), calibrated against PMD's
+  `NcssCount` rule for Java and generalized to every supported language; unlike PMD, package and
+  import declarations count, and statement-shaped content is counted uniformly in expression
+  positions too
+- Per-function and file-level nesting depth
+- Per-function parameter counts and locations (name, node type, line span)
+- Within-file duplication: copy-pasted blocks matched on normalized tokens (identifiers anonymized
+  consistently, literals by kind, and literal-dense data tables excluded unless their values also
+  match), with adjacent matches around a small edit merged into gapped (Type-3) clone groups and
+  near-miss (Type-3) clones matched by token-LCS similarity, plus duplicated line count and ratio
+- Cross-file duplication (via `measureCrossFileDuplication`): copy-pasted blocks shared between
+  files, matched with the same normalization and reported as groups with their file locations
+- Halstead base counts, vocabulary, length, volume, and effort
+
+Metrics that the validation literature shows to be weakly grounded or that invite misdirected
+"improvements" (cyclomatic complexity, call-graph fan-in/fan-out, coupling and cohesion counts,
+maintainability index, and similar) are intentionally not measured; see
+[issue #44](https://github.com/WillBooster/code-gauge/issues/44) for the rationale and references.
 
 ## Supported languages
 
-Built-in parsers cover JavaScript, JSX, TypeScript, TSX, Python, Go, Rust, Java, Ruby, C, and C++. Additional tree-sitter grammars can be registered with `TreeMeasurer.registerLanguage`.
+Built-in parsers cover JavaScript, JSX, TypeScript, TSX, Python, Go, Rust, Java, Ruby, C, and C++.
+Additional tree-sitter grammars can be registered with `TreeMeasurer.registerLanguage`.
 
 ## Native (Rust) backend
 
-Measurement is also implemented as a Rust addon that produces bit-identical metrics roughly 13x faster than the TypeScript backend (the tree-sitter grammar crates are pinned to the same versions as the npm grammar packages). With a [Rust toolchain](https://rustup.rs) installed, build it once:
+Measurement is also implemented as a Rust addon that produces bit-identical metrics roughly 13x
+faster than the TypeScript backend (the tree-sitter grammar crates are pinned to the same versions
+as the npm grammar packages). With a [Rust toolchain](https://rustup.rs) installed, build it once:
 
 ```sh
 yarn build-native
 ```
 
-`measureCode` and the CLI pick up `native/code-gauge.node` automatically and fall back to the TypeScript implementation when the addon is missing (for example, on npm installs) or when a custom language has been registered. Set `CODE_GAUGE_NATIVE=0` to force the TypeScript backend, and compare both with `yarn benchmark` (requires `yarn build` first). `isNativeBackendAvailable()` reports which backend is in use.
+`measureCode` and the CLI pick up `native/code-gauge.node` automatically and fall back to the
+TypeScript implementation when the addon is missing (for example, on npm installs) or when a custom
+language has been registered. Set `CODE_GAUGE_NATIVE=0` to force the TypeScript backend, and compare
+both with `yarn benchmark` (requires `yarn build` first). `isNativeBackendAvailable()` reports which
+backend is in use.
 
 ## Programmatic API
 
@@ -180,5 +169,5 @@ function score(value) {
   { language: 'javascript' }
 );
 
-console.log(metrics.cyclomaticComplexity);
+console.log(metrics.maxCognitiveComplexity);
 ```

package/dist/cli.cjs

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-"use strict";const e=require("./_virtual/_rolldown/runtime.cjs"),t=require("./crossFileDuplication.cjs"),n=require("./metrics.cjs"),r=require("./architectureMetrics.cjs"),i=require("./cliConfig.cjs"),a=require("./typescriptProject.cjs");let o=require("node:fs/promises"),s=require("node:os");s=e.__toESM(s,1);let c=require("node:path");c=e.__toESM(c,1);let l=require("commander");const u=new Map([[`.c`,`c`],[`.c++`,`cpp`],[`.cc`,`cpp`],[`.cjs`,`javascript`],[`.cp`,`cpp`],[`.cpp`,`cpp`],[`.tcc`,`cpp`],[`.cts`,`typescript`],[`.cxx`,`cpp`],[`.go`,`go`],[`.h`,`cpp`],[`.hh`,`cpp`],[`.hpp`,`cpp`],[`.hxx`,`cpp`],[`.java`,`java`],[`.js`,`javascript`],[`.jsx`,`jsx`],[`.mjs`,`javascript`],[`.mts`,`typescript`],[`.py`,`python`],[`.rb`,`ruby`],[`.rs`,`rust`],[`.ts`,`typescript`],[`.tsx`,`tsx`]]),d=new Set([`.agents`,`.claude`,`.cursor`,`.git`,`.next`,`.playwright-cli`,`.tox`,`.tmp`,`.turbo`,`.venv`,`.yarn`,`__fixtures__`,`__generated__`,`__pycache__`,`coverage`,`dist`,`fixtures`,`generated`,`node_modules`,`target`,`test-fixtures`,`vendor`,`venv`]),f=new Set([`__tests__`,`test`,`tests`,`spec`]),p=/(?:^test(?:[_-].*)?|\.(?:spec|test)|[_-](?:test|spec))\.[^.]+$/iu,m=/Test\.java$/u;h().catch(e=>{Q(`Error: ${$(e)}\n`),process.exitCode=1});async function h(){let e=new l.Command().name(`code-gauge`).description(`Measure code metrics and list high-risk findings.`).argument(`[target]`,`file or directory to measure`,`.`).option(`--config <path>`,`config file to use instead of the auto-detected ${i.configFileName}`).option(`--file-loc-threshold <number>`,`minimum file code LOC to report`,Y).option(`--function-loc-threshold <number>`,`minimum function physical LOC span to report`,Y).option(`--component-loc-threshold <number>`,`minimum React component physical LOC span to report`,Y).option(`--cognitive-threshold <number>`,`minimum cognitive complexity to report`,Y).option(`--cyclomatic-threshold <number>`,`minimum cyclomatic complexity to report`,Y).option(`--call-threshold <number>`,`minimum function call count to report`,Y).option(`--import-threshold <number>`,`minimum unique import sources per file to report`,Y).option(`--fan-out-threshold <number>`,`minimum intra-file fan-out per function to report`,Y).option(`--parameter-threshold <number>`,`minimum function parameter count to report`,Y).option(`--duplicate-block-threshold <number>`,`minimum count of duplicated code blocks per file to report`,Y).option(`--duplication-ratio-percent-threshold <number>`,`minimum percentage (1-100) of duplicated lines per file to report`,J).option(`--cross-file-duplicate-block-threshold <number>`,`minimum count of cross-file duplicate block groups per file to report`,Y).option(`--duplication-min-tokens <number>`,`minimum normalized token count for a duplicate region (default 40)`,Y).option(`--duplication-max-gap-tokens <number>`,`maximum token gap merged into one gapped clone group; 0 disables merging (default 30)`,ce).option(`--duplication-min-similarity-percent <number>`,`minimum similarity percent (1-100) for near-miss (Type-3) clone blocks; 100 reports exact matches only (default 70)`,J).option(`--transitive-dependency-threshold <number>`,`minimum transitively reachable local files to report`,Y).option(`--structural-breadth-threshold <number>`,`minimum structural breadth score to report`,Y).option(`--structural-coordination-threshold <number>`,`minimum structural coordination score to report`,Y).option(`--state-mutation-threshold <number>`,`minimum state mutation score to report`,Y).option(`--duplicate-symbol-group-threshold <number>`,`minimum duplicate symbol group count to report`,Y).option(`--max-findings <number>`,`maximum number of risk findings to print`,Y).option(`--largest-files <number>`,`number of largest files by code LOC to list`,Y).option(`--include-tests`,`include test files and test directories`).option(`--tsconfig <path>`,`TypeScript project file to use instead of auto-detected tsconfig.json`).option(`--json`,`print JSON output`).option(`--fail-on-error`,`exit with code 1 when files or directories cannot be scanned`).option(`--fail-on-risk`,`exit with code 1 when high-risk findings are found`);e.action(async(e,t)=>{let n=g(e),r=await i.loadConfig(t.config,await _(n)),a=i.resolveOptions(t,r),o=await v(n,a);T(o),await ne(o),await ee(o,a,n);let s=ie(o.files,o.architecture,o.crossFileDuplication,o.componentFunctionKeys,o.namedComponentFunctionKeys,a,o.displayRoot);a.json?P(o,s,a):F(n,o,s,a),(o.fatalError||a.failOnError&&o.errors.length>0||a.failOnRisk&&s.length>0)&&(process.exitCode=1)}),await e.parseAsync()}function g(e){return e===`~`?s.default.homedir():e.startsWith(`~/`)?c.default.join(s.default.homedir(),e.slice(2)):c.default.resolve(e)}async function _(e){try{return(await(0,o.stat)(e)).isDirectory()?e:c.default.dirname(e)}catch{return c.default.dirname(e)}}async function v(e,t){let n=[],r=[],i=[],a=e;try{a=await(0,o.realpath)(e)}catch{}let s=c.default.dirname(a),l;try{l=await(0,o.stat)(a)}catch(e){let t=`${X(a,s)}: ${$(e)}`;return{displayRoot:s,files:n,errors:[t],warnings:i,fatalError:t}}if(l.isFile()){let e=c.default.dirname(a),o=q(a,t,!0);if(!o){let t=`${X(a,e)}: unsupported file type`;return{displayRoot:e,files:n,errors:[t],warnings:i,fatalError:t}}let s=y(t,n,r,i,e);return await w(a,o,`single-file`,s,a),{displayRoot:e,files:n,errors:r,warnings:i}}return await S(a,y(t,n,r,i,a)),{displayRoot:a,files:n,errors:r,warnings:i}}function y(e,t,n,r,i){return{options:e,files:t,errors:n,warnings:r,visitedDirectories:new Set,visitedFiles:new Set,rootDirectory:i}}async function ee(e,t,n){if(e.fatalError||e.files.length===0)return;let r=t.tsconfig,i=r!==void 0;if(!i&&!e.files.some(({file:e})=>b(e)))return;let o=r?g(r):await 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package/dist/cli.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"cli.cjs","names":["Command","configFileName","loadConfig","resolveOptions","os","path","stat","realpath","measureTypeScriptProject","measureArchitecture","readdir","readFile","measureCode","collectDuplicationCandidates","measureCrossFileDuplication","resolveThresholds","InvalidArgumentError"],"sources":["../src/cli.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { readdir, readFile, realpath, stat } from 'node:fs/promises';\nimport os from 'node:os';\nimport path from 'node:path';\nimport { Command, InvalidArgumentError } from 'commander';\nimport { measureArchitecture, type ArchitectureFileMetrics, type ArchitectureMetrics } from './architectureMetrics.js';\nimport {\n  type CliOptions,\n  configFileName,\n  loadConfig,\n  type ResolvedOptions,\n  resolveOptions,\n  resolveThresholds,\n  type Thresholds,\n} from './cliConfig.js';\nimport { measureCrossFileDuplication, type CrossFileDuplicationMetrics } from './crossFileDuplication.js';\nimport type { CrossFileDuplicateCandidate } from './duplication.js';\nimport { collectDuplicationCandidates, measureCode } from './metrics.js';\nimport { measureTypeScriptProject, type TypeScriptProjectMetrics } from './typescriptProject.js';\nimport type { CodeMetrics, FunctionMetrics, LanguageName } from './types.js';\n\ninterface FileMetrics {\n  file: string;\n  metrics: CodeMetrics;\n  /** Cross-file duplicate candidates, collected only for directory scans. */\n  duplicationCandidates?: CrossFileDuplicateCandidate[];\n}\n\ninterface RiskTrigger {\n  /** Optional location hint (e.g. duplicated block line ranges) appended to the printed trigger. */\n  detail?: string;\n  metric: string;\n  score: number;\n  threshold: number;\n  value: number;\n}\n\ninterface RiskFinding {\n  cognitiveComplexity: number;\n  cyclomaticComplexity: number;\n  endLine?: number;\n  file: string;\n  kind: 'component' | 'file' | 'function';\n  language: LanguageName;\n  name?: string;\n  score: number;\n  startLine?: number;\n  triggers: RiskTrigger[];\n}\n\ninterface ScanResult {\n  architecture?: ArchitectureMetrics;\n  componentFunctionKeys?: Set<string>;\n  crossFileDuplication?: CrossFileDuplicationMetrics;\n  displayRoot: string;\n  errors: string[];\n  /** Non-fatal degradations (e.g. cross-file candidates unavailable); the file is still measured. */\n  warnings: string[];\n  fatalError?: string;\n  files: FileMetrics[];\n  namedComponentFunctionKeys?: Set<string>;\n  typeScriptProject?: TypeScriptProjectMetrics;\n}\n\nconst languageByExtension = new Map<string, LanguageName>([\n  ['.c', 'c'],\n  ['.c++', 'cpp'],\n  ['.cc', 'cpp'],\n  ['.cjs', 'javascript'],\n  ['.cp', 'cpp'],\n  ['.cpp', 'cpp'],\n  ['.tcc', 'cpp'],\n  ['.cts', 'typescript'],\n  ['.cxx', 'cpp'],\n  ['.go', 'go'],\n  // Headers may be C or C++; the C++ grammar parses both.\n  ['.h', 'cpp'],\n  ['.hh', 'cpp'],\n  ['.hpp', 'cpp'],\n  ['.hxx', 'cpp'],\n  ['.java', 'java'],\n  ['.js', 'javascript'],\n  ['.jsx', 'jsx'],\n  ['.mjs', 'javascript'],\n  ['.mts', 'typescript'],\n  ['.py', 'python'],\n  ['.rb', 'ruby'],\n  ['.rs', 'rust'],\n  ['.ts', 'typescript'],\n  ['.tsx', 'tsx'],\n]);\n\nconst ignoredDirectoryNames = new Set([\n  '.agents',\n  '.claude',\n  '.cursor',\n  '.git',\n  '.next',\n  '.playwright-cli',\n  '.tox',\n  '.tmp',\n  '.turbo',\n  '.venv',\n  '.yarn',\n  '__fixtures__',\n  '__generated__',\n  '__pycache__',\n  'coverage',\n  'dist',\n  'fixtures',\n  'generated',\n  'node_modules',\n  'target',\n  'test-fixtures',\n  'vendor',\n  'venv',\n]);\n\n/** Caps the `Duplicate symbols` section so large repositories do not flood the report. */\nconst maxDuplicateSymbolGroupLines = 10;\n/** Caps the `Cross-file duplicate blocks` section so large repositories do not flood the report. */\nconst maxCrossFileDuplicateGroupLines = 10;\n/** Caps how many cross-file group locations a single risk finding repeats as detail. */\nconst maxCrossFileDuplicateDetailGroups = 3;\n\nconst testDirectoryNames = new Set(['__tests__', 'test', 'tests', 'spec']);\nconst testFilePattern = /(?:^test(?:[_-].*)?|\\.(?:spec|test)|[_-](?:test|spec))\\.[^.]+$/iu;\n// JUnit tests use a case-sensitive `Test.java` suffix; case-insensitive matching would catch\n// production files like `contest.java`.\nconst javaTestFilePattern = /Test\\.java$/u;\n\n// oxlint-disable-next-line unicorn/prefer-top-level-await -- CommonJS build output cannot preserve top-level await.\nvoid main().catch((error: unknown) => {\n  writeStderr(`Error: ${formatError(error)}\\n`);\n  process.exitCode = 1;\n});\n\nasync function main(): Promise<void> {\n  const program = new Command()\n    .name('code-gauge')\n    .description('Measure code metrics and list high-risk findings.')\n    .argument('[target]', 'file or directory to measure', '.')\n    .option('--config <path>', `config file to use instead of the auto-detected ${configFileName}`)\n    .option('--file-loc-threshold <number>', 'minimum file code LOC to report', parsePositiveInteger)\n    .option('--function-loc-threshold <number>', 'minimum function physical LOC span to report', parsePositiveInteger)\n    .option(\n      '--component-loc-threshold <number>',\n      'minimum React component physical LOC span to report',\n      parsePositiveInteger\n    )\n    .option('--cognitive-threshold <number>', 'minimum cognitive complexity to report', parsePositiveInteger)\n    .option('--cyclomatic-threshold <number>', 'minimum cyclomatic complexity to report', parsePositiveInteger)\n    .option('--call-threshold <number>', 'minimum function call count to report', parsePositiveInteger)\n    .option('--import-threshold <number>', 'minimum unique import sources per file to report', parsePositiveInteger)\n    .option('--fan-out-threshold <number>', 'minimum intra-file fan-out per function to report', parsePositiveInteger)\n    .option('--parameter-threshold <number>', 'minimum function parameter count to report', parsePositiveInteger)\n    .option(\n      '--duplicate-block-threshold <number>',\n      'minimum count of duplicated code blocks per file to report',\n      parsePositiveInteger\n    )\n    .option(\n      '--duplication-ratio-percent-threshold <number>',\n      'minimum percentage (1-100) of duplicated lines per file to report',\n      parsePercentInteger\n    )\n    .option(\n      '--cross-file-duplicate-block-threshold <number>',\n      'minimum count of cross-file duplicate block groups per file to report',\n      parsePositiveInteger\n    )\n    .option(\n      '--duplication-min-tokens <number>',\n      'minimum normalized token count for a duplicate region (default 40)',\n      parsePositiveInteger\n    )\n    .option(\n      '--duplication-max-gap-tokens <number>',\n      'maximum token gap merged into one gapped clone group; 0 disables merging (default 30)',\n      parseNonNegativeInteger\n    )\n    .option(\n      '--duplication-min-similarity-percent <number>',\n      'minimum similarity percent (1-100) for near-miss (Type-3) clone blocks; 100 reports exact matches only (default 70)',\n      parsePercentInteger\n    )\n    .option(\n      '--transitive-dependency-threshold <number>',\n      'minimum transitively reachable local files to report',\n      parsePositiveInteger\n    )\n    .option(\n      '--structural-breadth-threshold <number>',\n      'minimum structural breadth score to report',\n      parsePositiveInteger\n    )\n    .option(\n      '--structural-coordination-threshold <number>',\n      'minimum structural coordination score to report',\n      parsePositiveInteger\n    )\n    .option('--state-mutation-threshold <number>', 'minimum state mutation score to report', parsePositiveInteger)\n    .option(\n      '--duplicate-symbol-group-threshold <number>',\n      'minimum duplicate symbol group count to report',\n      parsePositiveInteger\n    )\n    .option('--max-findings <number>', 'maximum number of risk findings to print', parsePositiveInteger)\n    .option('--largest-files <number>', 'number of largest files by code LOC to list', parsePositiveInteger)\n    .option('--include-tests', 'include test files and test directories')\n    .option('--tsconfig <path>', 'TypeScript project file to use instead of auto-detected tsconfig.json')\n    .option('--json', 'print JSON output')\n    .option('--fail-on-error', 'exit with code 1 when files or directories cannot be scanned')\n    .option('--fail-on-risk', 'exit with code 1 when high-risk findings are found');\n\n  program.action(async (target: string, cliOptions: CliOptions) => {\n    const resolvedTarget = resolveTarget(target);\n    const config = await loadConfig(cliOptions.config, await configSearchDirectory(resolvedTarget));\n    const options = resolveOptions(cliOptions, config);\n    const result = await scanTarget(resolvedTarget, options);\n    addCrossFileDuplication(result);\n    await addArchitectureMetrics(result);\n    await addTypeScriptProjectMetrics(result, options, resolvedTarget);\n    const risks = findRiskyFunctions(\n      result.files,\n      result.architecture,\n      result.crossFileDuplication,\n      result.componentFunctionKeys,\n      result.namedComponentFunctionKeys,\n      options,\n      result.displayRoot\n    );\n\n    if (options.json) {\n      printJson(result, risks, options);\n    } else {\n      printTextReport(resolvedTarget, result, risks, options);\n    }\n\n    if (\n      result.fatalError ||\n      (options.failOnError && result.errors.length > 0) ||\n      (options.failOnRisk && risks.length > 0)\n    ) {\n      process.exitCode = 1;\n    }\n  });\n\n  await program.parseAsync();\n}\n\nfunction resolveTarget(target: string): string {\n  if (target === '~') {\n    return os.homedir();\n  }\n\n  if (target.startsWith('~/')) {\n    return path.join(os.homedir(), target.slice(2));\n  }\n\n  return path.resolve(target);\n}\n\n/** Returns the directory from which the config file search should start (the target itself if it is a directory). */\nasync function configSearchDirectory(target: string): Promise<string> {\n  try {\n    const targetStat = await stat(target);\n    return targetStat.isDirectory() ? target : path.dirname(target);\n  } catch {\n    return path.dirname(target);\n  }\n}\n\n/** Shared state of one scan, threaded through the directory walk instead of positional plumbing. */\ninterface ScanContext {\n  options: ResolvedOptions;\n  files: FileMetrics[];\n  errors: string[];\n  warnings: string[];\n  visitedDirectories: Set<string>;\n  visitedFiles: Set<string>;\n  /** Scan root: paths are displayed relative to it, and symbolic links may not escape it. */\n  rootDirectory: string;\n}\n\nasync function scanTarget(target: string, options: ResolvedOptions): Promise<ScanResult> {\n  const files: FileMetrics[] = [];\n  const errors: string[] = [];\n  const warnings: string[] = [];\n  let canonicalTarget = target;\n  try {\n    canonicalTarget = await realpath(target);\n  } catch {\n    // stat below reports missing targets with the original path.\n  }\n\n  const fallbackDisplayRoot = path.dirname(canonicalTarget);\n  let targetStat;\n\n  try {\n    targetStat = await stat(canonicalTarget);\n  } catch (error) {\n    const fatalError = `${formatPath(canonicalTarget, fallbackDisplayRoot)}: ${formatError(error)}`;\n    return { displayRoot: fallbackDisplayRoot, files, errors: [fatalError], warnings, fatalError };\n  }\n\n  if (targetStat.isFile()) {\n    const displayRoot = path.dirname(canonicalTarget);\n    const language = getLanguage(canonicalTarget, options, true);\n    if (!language) {\n      const fatalError = `${formatPath(canonicalTarget, displayRoot)}: unsupported file type`;\n      return { displayRoot, files, errors: [fatalError], warnings, fatalError };\n    }\n\n    const context = makeScanContext(options, files, errors, warnings, displayRoot);\n    await measureFile(canonicalTarget, language, 'single-file', context, canonicalTarget);\n    return { displayRoot, files, errors, warnings };\n  }\n\n  await scanDirectory(canonicalTarget, makeScanContext(options, files, errors, warnings, canonicalTarget));\n  return { displayRoot: canonicalTarget, files, errors, warnings };\n}\n\nfunction makeScanContext(\n  options: ResolvedOptions,\n  files: FileMetrics[],\n  errors: string[],\n  warnings: string[],\n  rootDirectory: string\n): ScanContext {\n  return { options, files, errors, warnings, visitedDirectories: new Set(), visitedFiles: new Set(), rootDirectory };\n}\n\nasync function addTypeScriptProjectMetrics(\n  result: ScanResult,\n  options: ResolvedOptions,\n  resolvedTarget: string\n): Promise<void> {\n  if (result.fatalError) {\n    return;\n  }\n  if (result.files.length === 0) {\n    return;\n  }\n\n  const explicitConfigFile = options.tsconfig;\n  const isExplicitConfig = explicitConfigFile !== undefined;\n  if (!isExplicitConfig && !result.files.some(({ file }) => isTypeScriptProjectCandidateFile(file))) {\n    return;\n  }\n\n  const configFile = explicitConfigFile ? resolveTarget(explicitConfigFile) : await findNearestTsconfig(resolvedTarget);\n  if (!configFile) {\n    return;\n  }\n\n  try {\n    result.typeScriptProject = await measureTypeScriptProject(\n      configFile,\n      result.files.map(({ file }) => file)\n    );\n    result.componentFunctionKeys = new Set(\n      result.typeScriptProject.reactComponentFunctions.map((component) =>\n        functionLocationKey(component.file, component.startLine, component.startColumn)\n      )\n    );\n    result.namedComponentFunctionKeys = new Set(\n      result.typeScriptProject.reactComponentFunctions.flatMap((component) =>\n        component.name ? [functionNameLocationKey(component.file, component.name, component.startLine)] : []\n      )\n    );\n  } catch (error) {\n    if (isExplicitConfig) {\n      result.errors.push(`${formatPath(configFile, result.displayRoot)}: ${formatError(error)}`);\n    }\n  }\n}\n\nfunction isTypeScriptProjectCandidateFile(file: string): boolean {\n  return ['.cjs', '.cts', '.js', '.jsx', '.mjs', '.mts', '.ts', '.tsx'].includes(path.extname(file));\n}\n\nasync function findNearestTsconfig(target: string): Promise<string | undefined> {\n  const targetStat = await stat(target);\n  let currentDirectory = targetStat.isDirectory() ? target : path.dirname(target);\n  while (true) {\n    const configFile = path.join(currentDirectory, 'tsconfig.json');\n    if (await fileExists(configFile)) {\n      return configFile;\n    }\n\n    const parentDirectory = path.dirname(currentDirectory);\n    if (parentDirectory === currentDirectory) {\n      return undefined;\n    }\n    currentDirectory = parentDirectory;\n  }\n}\n\nasync function fileExists(file: string): Promise<boolean> {\n  try {\n    const fileStat = await stat(file);\n    return fileStat.isFile();\n  } catch {\n    return false;\n  }\n}\n\nasync function addArchitectureMetrics(result: ScanResult): Promise<void> {\n  if (result.fatalError) {\n    return;\n  }\n\n  try {\n    result.architecture = measureArchitecture(\n      result.files.map(({ file, metrics }) => ({ file, metrics })),\n      result.displayRoot\n    );\n  } catch (error) {\n    result.errors.push(`architecture metrics: ${formatError(error)}`);\n  }\n}\n\nasync function scanDirectory(directory: string, context: ScanContext): Promise<void> {\n  let resolvedDirectory;\n  try {\n    resolvedDirectory = await realpath(directory);\n  } catch (error) {\n    context.errors.push(`${formatPath(directory, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  if (!isWithinDirectory(resolvedDirectory, context.rootDirectory)) {\n    return;\n  }\n\n  if (context.visitedDirectories.has(resolvedDirectory)) {\n    return;\n  }\n  context.visitedDirectories.add(resolvedDirectory);\n\n  let entries;\n  try {\n    entries = await readdir(directory, { withFileTypes: true });\n  } catch (error) {\n    context.errors.push(`${formatPath(directory, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  for (const entry of entries) {\n    const entryPath = path.join(directory, entry.name);\n    if (entry.isSymbolicLink()) {\n      await scanSymbolicLink(entry.name, entryPath, context);\n      continue;\n    }\n\n    if (entry.isDirectory()) {\n      if (shouldSkipDirectory(entry.name, context.options)) {\n        continue;\n      }\n      await scanDirectory(entryPath, context);\n      continue;\n    }\n\n    if (entry.isFile()) {\n      await measureScannableFile(entryPath, context);\n    }\n  }\n}\n\nasync function scanSymbolicLink(name: string, entryPath: string, context: ScanContext): Promise<void> {\n  let resolvedPath;\n  try {\n    resolvedPath = await realpath(entryPath);\n  } catch (error) {\n    context.errors.push(`${formatPath(entryPath, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  if (!isWithinDirectory(resolvedPath, context.rootDirectory)) {\n    return;\n  }\n\n  let entryStat;\n  try {\n    entryStat = await stat(entryPath);\n  } catch (error) {\n    context.errors.push(`${formatPath(entryPath, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  if (entryStat.isDirectory()) {\n    if (\n      shouldSkipDirectory(name, context.options) ||\n      shouldSkipDirectory(path.basename(resolvedPath), context.options)\n    ) {\n      return;\n    }\n    await scanDirectory(entryPath, context);\n    return;\n  }\n\n  if (entryStat.isFile()) {\n    await measureScannableFile(entryPath, context, resolvedPath, resolvedPath);\n  }\n}\n\nasync function measureScannableFile(\n  file: string,\n  context: ScanContext,\n  languageFile = file,\n  realFile?: string\n): Promise<void> {\n  const language = getLanguage(languageFile, context.options);\n  if (language) {\n    await measureFile(file, language, 'directory', context, realFile);\n  }\n}\n\nasync function measureFile(\n  file: string,\n  language: LanguageName,\n  mode: 'single-file' | 'directory',\n  context: ScanContext,\n  realFile?: string\n): Promise<void> {\n  try {\n    const resolvedFile = realFile ?? (await realpath(file));\n    if (context.visitedFiles.has(resolvedFile)) {\n      return;\n    }\n    context.visitedFiles.add(resolvedFile);\n\n    const code = await readFile(file, 'utf8');\n    const measureOptions = { language, duplication: context.options.duplication };\n    const fileMetrics: FileMetrics = { file, metrics: measureCode(code, measureOptions) };\n    // Only directory scans compare files against each other; a single-file target has no peers.\n    // Candidate collection failing (it always parses with the JavaScript binding, which can give\n    // up where the native backend measured fine) must not discard the measured metrics.\n    if (mode === 'directory') {\n      try {\n        fileMetrics.duplicationCandidates = collectDuplicationCandidates(code, measureOptions);\n      } catch (error) {\n        // A warning, not an error: the file's metrics are complete, only its participation in\n        // cross-file matching is lost, so it is not \"skipped\" and must not fail --fail-on-error.\n        context.warnings.push(\n          `${formatPath(file, context.rootDirectory)}: cross-file duplication candidates unavailable: ${formatError(error)}`\n        );\n      }\n    }\n    context.files.push(fileMetrics);\n  } catch (error) {\n    context.errors.push(`${formatPath(file, context.rootDirectory)}: ${formatError(error)}`);\n  }\n}\n\n/** Runs after the scan so every measured file's candidates participate. */\nfunction addCrossFileDuplication(result: ScanResult): void {\n  if (result.fatalError || result.files.length < 2) {\n    return;\n  }\n  const sourceFiles = result.files.flatMap(({ file, duplicationCandidates }) =>\n    duplicationCandidates ? [{ file: formatPath(file, result.displayRoot), candidates: duplicationCandidates }] : []\n  );\n  if (sourceFiles.length < 2) {\n    return;\n  }\n  result.crossFileDuplication = measureCrossFileDuplication(sourceFiles);\n}\n\nfunction findRiskyFunctions(\n  files: FileMetrics[],\n  architecture: ArchitectureMetrics | undefined,\n  crossFileDuplication: CrossFileDuplicationMetrics | undefined,\n  componentFunctionKeys: Set<string> | undefined,\n  namedComponentFunctionKeys: Set<string> | undefined,\n  options: ResolvedOptions,\n  displayRoot: string\n): RiskFinding[] {\n  const architectureByFile = new Map(architecture?.files.map((file) => [file.file, file]));\n  const findings = files.flatMap(({ file, metrics }) => {\n    const isReactFile = metrics.functions.some(\n      (fn) => fn.returnsJsx || isReactComponent(file, fn, componentFunctionKeys, namedComponentFunctionKeys)\n    );\n    const thresholds = resolveThresholds(options, metrics.language, isReactFile);\n    return [\n      ...findRiskyFileMetrics(\n        file,\n        metrics,\n        architectureByFile.get(formatPath(file, displayRoot)),\n        crossFileDuplication,\n        thresholds,\n        displayRoot\n      ),\n      ...metrics.functions.flatMap((fn) =>\n        findRiskyFunctionMetrics(\n          file,\n          metrics.language,\n          fn,\n          thresholds,\n          displayRoot,\n          componentFunctionKeys,\n          namedComponentFunctionKeys\n        )\n      ),\n    ];\n  });\n\n  findings.sort(compareRiskFindings);\n  return findings;\n}\n\nfunction findRiskyFileMetrics(\n  file: string,\n  metrics: CodeMetrics,\n  architecture: ArchitectureFileMetrics | undefined,\n  crossFileDuplication: CrossFileDuplicationMetrics | undefined,\n  thresholds: Thresholds,\n  displayRoot: string\n): RiskFinding[] {\n  const triggers: RiskTrigger[] = [];\n  const formattedFile = formatPath(file, displayRoot);\n  addTrigger(triggers, 'file LOC', metrics.lines.code, thresholds.fileLoc);\n  addTrigger(triggers, 'import sources', metrics.coupling.importSourceCount, thresholds.import);\n  const duplicateBlockDetail = formatDuplicateBlockGroups(metrics.duplication.duplicateBlockGroups);\n  addTrigger(\n    triggers,\n    'duplicated blocks',\n    metrics.duplication.duplicateBlockCount,\n    thresholds.duplicateBlock,\n    duplicateBlockDetail\n  );\n  // Maximal-region selection deliberately compresses adjacent clones into few blocks, so severity\n  // must track line coverage, not the block count. Flooring compares like the unrounded ratio\n  // against the integer threshold (29.5% must not trigger a >= 30 threshold). The block ranges are\n  // repeated as detail because this trigger can fire alone, and a percentage without locations is\n  // not actionable.\n  addTrigger(\n    triggers,\n    'duplicated lines (%)',\n    Math.floor(metrics.duplication.duplicationRatio * 100),\n    thresholds.duplicationRatioPercent,\n    duplicateBlockDetail\n  );\n  if (crossFileDuplication) {\n    // Object.hasOwn: a file named like an Object.prototype member must not read an inherited value.\n    addTrigger(\n      triggers,\n      'cross-file duplicated blocks',\n      Object.hasOwn(crossFileDuplication.duplicateBlockGroupCountByFile, formattedFile)\n        ? (crossFileDuplication.duplicateBlockGroupCountByFile[formattedFile] ?? 0)\n        : 0,\n      thresholds.crossFileDuplicateBlock,\n      formatCrossFileDuplicateDetail(crossFileDuplication, formattedFile)\n    );\n  }\n  if (architecture) {\n    const hasFileScaleRisk = metrics.lines.code >= 100 || architecture.directLocalDependencyCount >= 8;\n    if (hasFileScaleRisk) {\n      addTrigger(\n        triggers,\n        'transitive local dependencies',\n        architecture.transitiveLocalDependencyCount,\n        thresholds.transitiveDependency\n      );\n    }\n    if (\n      triggers.length > 0 ||\n      architecture.directLocalDependencyCount >= 8 ||\n      architecture.structuralCoordination.score >= thresholds.structuralCoordination\n    ) {\n      addTrigger(triggers, 'structural breadth', architecture.structuralBreadthScore, thresholds.structuralBreadth);\n    }\n    addTrigger(\n      triggers,\n      'structural coordination',\n      architecture.structuralCoordination.score,\n      thresholds.structuralCoordination\n    );\n    addTrigger(\n      triggers,\n      'state mutation',\n      architecture.structuralCoordination.stateMutationScore,\n      thresholds.stateMutation\n    );\n    addTrigger(\n      triggers,\n      'duplicate symbol groups',\n      architecture.duplicateSymbolGroupCount,\n      thresholds.duplicateSymbolGroup\n    );\n  }\n  if (triggers.length === 0) {\n    return [];\n  }\n\n  return [\n    {\n      file: formattedFile,\n      language: metrics.language,\n      kind: 'file',\n      cyclomaticComplexity: metrics.cyclomaticComplexity,\n      cognitiveComplexity: metrics.cognitiveComplexity,\n      triggers,\n      score: maxTriggerScore(triggers),\n    },\n  ];\n}\n\nfunction findRiskyFunctionMetrics(\n  file: string,\n  language: LanguageName,\n  fn: FunctionMetrics,\n  thresholds: Thresholds,\n  displayRoot: string,\n  componentFunctionKeys?: Set<string>,\n  namedComponentFunctionKeys?: Set<string>\n): RiskFinding[] {\n  const loc = fn.endLine - fn.startLine + 1;\n  const isComponent = isReactComponent(file, fn, componentFunctionKeys, namedComponentFunctionKeys);\n  const kind = isComponent ? 'component' : 'function';\n  const triggers: RiskTrigger[] = [];\n  addTrigger(triggers, 'cognitive complexity', fn.cognitiveComplexity, thresholds.cognitive);\n  addTrigger(triggers, 'cyclomatic complexity', fn.cyclomaticComplexity, thresholds.cyclomatic);\n  addTrigger(triggers, isComponent ? 'component LOC' : 'function LOC', loc, getLocThreshold(isComponent, thresholds));\n  addTrigger(triggers, 'function calls', fn.callCount, thresholds.call);\n  addTrigger(triggers, 'fan-out', fn.fanOut, thresholds.fanOut);\n  addTrigger(triggers, 'parameters', fn.parameterCount, thresholds.parameter);\n  if (triggers.length === 0) {\n    return [];\n  }\n\n  return [\n    {\n      file: formatPath(file, displayRoot),\n      language,\n      kind,\n      name: fn.name ?? '<anonymous>',\n      startLine: fn.startLine,\n      endLine: fn.endLine,\n      cyclomaticComplexity: fn.cyclomaticComplexity,\n      cognitiveComplexity: fn.cognitiveComplexity,\n      triggers,\n      score: maxTriggerScore(triggers),\n    },\n  ];\n}\n\nfunction addTrigger(triggers: RiskTrigger[], metric: string, value: number, threshold: number, detail?: string): void {\n  if (value < threshold) {\n    return;\n  }\n\n  triggers.push({ metric, value, threshold, score: value / threshold, detail });\n}\n\n/** Formats the cross-file groups a file participates in as `12-34 ~ b.ts:56-78; ...` (capped). */\nfunction formatCrossFileDuplicateDetail(\n  crossFileDuplication: CrossFileDuplicationMetrics,\n  formattedFile: string\n): string | undefined {\n  const involved = crossFileDuplication.groups.filter((group) => group.files.includes(formattedFile));\n  if (involved.length === 0) {\n    return undefined;\n  }\n  const formatted = involved\n    .slice(0, maxCrossFileDuplicateDetailGroups)\n    .map((group) =>\n      group.occurrences\n        .map(({ file, startLine, endLine }) =>\n          file === formattedFile ? `${startLine}-${endLine}` : `${file}:${startLine}-${endLine}`\n        )\n        .join(' ~ ')\n    )\n    .join('; ');\n  const truncatedSuffix = involved.length > maxCrossFileDuplicateDetailGroups ? '; ...' : '';\n  return `${formatted}${truncatedSuffix}`;\n}\n\n/** Formats duplicated block groups as `12-34 ~ 56-78; 90-99 ~ 100-109` (copies joined by ` ~ `, groups by `; `). */\nfunction formatDuplicateBlockGroups(groups: { endLine: number; startLine: number }[][]): string | undefined {\n  if (groups.length === 0) {\n    return undefined;\n  }\n\n  return groups.map((group) => group.map(({ startLine, endLine }) => `${startLine}-${endLine}`).join(' ~ ')).join('; ');\n}\n\nfunction isReactComponent(\n  file: string,\n  fn: FunctionMetrics,\n  componentFunctionKeys: Set<string> | undefined,\n  namedComponentFunctionKeys: Set<string> | undefined\n): boolean {\n  return (\n    componentFunctionKeys?.has(functionLocationKey(file, fn.startLine, fn.startColumn)) ||\n    (fn.name ? namedComponentFunctionKeys?.has(functionNameLocationKey(file, fn.name, fn.startLine)) : false) ||\n    false\n  );\n}\n\nfunction getLocThreshold(isComponent: boolean, thresholds: Thresholds): number {\n  return isComponent ? thresholds.componentLoc : thresholds.functionLoc;\n}\n\nfunction functionLocationKey(file: string, startLine: number, startColumn: number): string {\n  return `${path.resolve(file)}:${startLine}:${startColumn}`;\n}\n\nfunction functionNameLocationKey(file: string, name: string, startLine: number): string {\n  return `${path.resolve(file)}:${name}:${startLine}`;\n}\n\nfunction maxTriggerScore(triggers: RiskTrigger[]): number {\n  return Math.max(...triggers.map((trigger) => trigger.score));\n}\n\nfunction compareRiskFindings(left: RiskFinding, right: RiskFinding): number {\n  return (\n    right.score - left.score ||\n    left.file.localeCompare(right.file) ||\n    (left.startLine ?? 0) - (right.startLine ?? 0) ||\n    (left.endLine ?? 0) - (right.endLine ?? 0) ||\n    left.kind.localeCompare(right.kind)\n  );\n}\n\nfunction printJson(result: ScanResult, risks: RiskFinding[], options: ResolvedOptions): void {\n  const summary = summarize(result.files);\n  const reportedRisks = risks.slice(0, options.maxFindings);\n  writeStdout(\n    JSON.stringify(\n      {\n        summary,\n        thresholds: options.thresholds,\n        profileThresholds: options.profileThresholds,\n        totalRisks: risks.length,\n        truncated: reportedRisks.length < risks.length,\n        largestFiles:\n          options.largestFiles > 0\n            ? findLargestFiles(result.files, options.largestFiles, result.displayRoot)\n            : undefined,\n        architecture: result.architecture,\n        crossFileDuplication: result.crossFileDuplication,\n        typeScriptProject: result.typeScriptProject,\n        risks: reportedRisks,\n        errors: result.errors,\n        warnings: result.warnings,\n      },\n      undefined,\n      2\n    ) + '\\n'\n  );\n}\n\nfunction printTextReport(target: string, result: ScanResult, risks: RiskFinding[], options: ResolvedOptions): void {\n  if (result.fatalError) {\n    writeStderr(`Error: ${result.fatalError}\\n`);\n    return;\n  }\n\n  const { thresholds } = options;\n  const summary = summarize(result.files);\n  writeStdout(`Measured ${summary.fileCount} files under ${target}\\n`);\n  writeStdout(\n    `LOC ${summary.linesOfCode}, NCSS ${summary.ncssCount}, functions ${summary.functionCount}, max cyclomatic ${summary.maxCyclomaticComplexity}, max cognitive ${summary.maxCognitiveComplexity}\\n`\n  );\n  writeStdout(\n    `Calls ${summary.callCount}, internal edges ${summary.internalCallCount}, max call depth ${summary.maxCallDepth}, imports ${summary.importSourceCount}, exports ${summary.exportCount}\\n`\n  );\n  writeStdout(\n    `Type annotations ${summary.typeAnnotationCount}, type aliases ${summary.typeAliasCount}, interfaces ${summary.interfaceCount}, avg cohesion ${summary.averageFunctionIdentifierOverlap.toFixed(2)}\\n`\n  );\n  if (result.architecture) {\n    writeStdout(`${formatArchitectureMetrics(result.architecture)}\\n`);\n  }\n  if (result.typeScriptProject) {\n    writeStdout(`${formatTypeScriptProjectMetrics(result.typeScriptProject)}\\n`);\n  }\n  writeStdout(\n    `Risk thresholds: file LOC >= ${thresholds.fileLoc}, function LOC >= ${thresholds.functionLoc}, component LOC >= ${thresholds.componentLoc}, cognitive >= ${thresholds.cognitive}, cyclomatic >= ${thresholds.cyclomatic}, calls >= ${thresholds.call}, imports >= ${thresholds.import}, fan-out >= ${thresholds.fanOut}, parameters >= ${thresholds.parameter}, duplicated blocks >= ${thresholds.duplicateBlock}, duplicated lines (%) >= ${thresholds.duplicationRatioPercent}, cross-file duplicated blocks >= ${thresholds.crossFileDuplicateBlock}\\n`\n  );\n  const profileOverrides = formatProfileOverrides(options.profileThresholds);\n  if (profileOverrides) {\n    writeStdout(`Per-language overrides: ${profileOverrides}\\n`);\n  }\n\n  if (risks.length === 0) {\n    writeStdout('No high-risk findings found.\\n');\n  } else {\n    const reportedRisks = risks.slice(0, options.maxFindings);\n    const totalSuffix = risks.length > reportedRisks.length ? ` of ${risks.length}` : '';\n    writeStdout(`\\nHigh-risk findings (top ${reportedRisks.length}${totalSuffix}):\\n`);\n    for (const risk of reportedRisks) {\n      writeStdout(`${formatRiskLocation(risk)} ${formatRiskName(risk)} ${formatRiskMetrics(risk)}\\n`);\n    }\n  }\n\n  const crossFileGroups = result.crossFileDuplication?.groups ?? [];\n  if (crossFileGroups.length > 0) {\n    const reportedGroups = crossFileGroups.slice(0, maxCrossFileDuplicateGroupLines);\n    const totalSuffix = crossFileGroups.length > reportedGroups.length ? ` of ${crossFileGroups.length}` : '';\n    writeStdout(`\\nCross-file duplicate blocks (top ${reportedGroups.length}${totalSuffix}):\\n`);\n    for (const group of reportedGroups) {\n      writeStdout(\n        `${group.tokenCount} tokens: ${group.occurrences\n          .map(({ file, startLine, endLine }) => `${file}:${startLine}-${endLine}`)\n          .join(', ')}\\n`\n      );\n    }\n  }\n\n  const duplicateSymbolGroups = result.architecture?.duplicateSymbolGroups ?? [];\n  if (duplicateSymbolGroups.length > 0) {\n    const reportedGroups = duplicateSymbolGroups\n      .toSorted((left, right) => right.files.length - left.files.length || left.name.localeCompare(right.name))\n      .slice(0, maxDuplicateSymbolGroupLines);\n    const totalSuffix =\n      duplicateSymbolGroups.length > reportedGroups.length ? ` of ${duplicateSymbolGroups.length}` : '';\n    writeStdout(`\\nDuplicate symbols (top ${reportedGroups.length}${totalSuffix}):\\n`);\n    for (const group of reportedGroups) {\n      writeStdout(\n        `${group.name}: ${group.declarations.map((declaration) => `${declaration.file}:${declaration.line}`).join(', ')}\\n`\n      );\n    }\n  }\n\n  if (options.largestFiles > 0) {\n    const largestFiles = findLargestFiles(result.files, options.largestFiles, result.displayRoot);\n    writeStdout(`\\nLargest files by code LOC (top ${largestFiles.length}):\\n`);\n    for (const { file, codeLoc } of largestFiles) {\n      writeStdout(`${file} (code LOC ${codeLoc})\\n`);\n    }\n  }\n\n  if (result.warnings.length > 0) {\n    writeStderr(`\\nDegraded ${result.warnings.length} files (measured, but excluded from cross-file matching):\\n`);\n    for (const warning of result.warnings.slice(0, 10)) {\n      writeStderr(`- ${warning}\\n`);\n    }\n    if (result.warnings.length > 10) {\n      writeStderr(`- ... ${result.warnings.length - 10} more\\n`);\n    }\n  }\n\n  if (result.errors.length > 0) {\n    writeStderr(`\\nSkipped ${result.errors.length} files or directories:\\n`);\n    for (const error of result.errors.slice(0, 10)) {\n      writeStderr(`- ${error}\\n`);\n    }\n    if (result.errors.length > 10) {\n      writeStderr(`- ... ${result.errors.length - 10} more\\n`);\n    }\n  }\n}\n\nfunction findLargestFiles(\n  files: FileMetrics[],\n  count: number,\n  displayRoot: string\n): { file: string; codeLoc: number }[] {\n  return files\n    .map(({ file, metrics }) => ({ file: formatPath(file, displayRoot), codeLoc: metrics.lines.code }))\n    .toSorted((left, right) => right.codeLoc - left.codeLoc || left.file.localeCompare(right.file))\n    .slice(0, count);\n}\n\nfunction formatProfileOverrides(profileThresholds: ResolvedOptions['profileThresholds']): string {\n  return Object.entries(profileThresholds)\n    .map(\n      ([profile, overrides]) =>\n        `${profile} { ${Object.entries(overrides)\n          .map(([metric, value]) => `${metric} ${value}`)\n          .join(', ')} }`\n    )\n    .join('; ');\n}\n\nfunction formatRiskLocation(risk: RiskFinding): string {\n  return risk.startLine === undefined || risk.endLine === undefined\n    ? risk.file\n    : `${risk.file}:${risk.startLine}-${risk.endLine}`;\n}\n\nfunction formatRiskName(risk: RiskFinding): string {\n  return risk.name ? `${risk.kind} ${risk.name}` : risk.kind;\n}\n\nfunction formatRiskMetrics(risk: RiskFinding): string {\n  const triggerText = risk.triggers\n    .map(\n      (trigger) =>\n        `${trigger.metric} ${formatMetricValue(trigger.value)} >= ${formatMetricValue(trigger.threshold)}${trigger.detail ? ` [${trigger.detail}]` : ''}`\n    )\n    .join(', ');\n  return `(${triggerText}; cyclomatic ${risk.cyclomaticComplexity}, cognitive ${risk.cognitiveComplexity})`;\n}\n\nfunction formatMetricValue(value: number): string {\n  return Number.isInteger(value) ? String(value) : value.toFixed(2);\n}\n\nfunction formatArchitectureMetrics(metrics: ArchitectureMetrics): string {\n  const maxStateMutationScore = Math.max(\n    0,\n    ...metrics.files.map((file) => file.structuralCoordination.stateMutationScore)\n  );\n  return `Architecture max reachable files ${metrics.maxTransitiveLocalDependencyCount}, max structural breadth ${metrics.maxStructuralBreadthScore}, max structural coordination ${metrics.maxStructuralCoordinationScore}, max state mutation ${maxStateMutationScore}, duplicate symbol groups ${metrics.duplicateSymbolGroups.length}`;\n}\n\nfunction formatTypeScriptProjectMetrics(metrics: TypeScriptProjectMetrics): string {\n  return `TypeScript project root files ${metrics.rootFileCount}, measured roots ${metrics.measuredRootFileCount}, semantic diagnostics ${metrics.semanticDiagnosticCount}, resolved calls ${metrics.resolvedCallExpressionCount}/${metrics.callExpressionCount} (${(metrics.resolvedCallExpressionRatio * 100).toFixed(1)}%)`;\n}\n\nfunction summarize(files: FileMetrics[]): {\n  fileCount: number;\n  functionCount: number;\n  linesOfCode: number;\n  maxCognitiveComplexity: number;\n  maxCyclomaticComplexity: number;\n  ncssCount: number;\n  callCount: number;\n  internalCallCount: number;\n  maxCallDepth: number;\n  importSourceCount: number;\n  relativeImportCount: number;\n  externalImportCount: number;\n  exportCount: number;\n  averageFunctionIdentifierOverlap: number;\n  typeAnnotationCount: number;\n  typeAliasCount: number;\n  interfaceCount: number;\n  genericParameterCount: number;\n} {\n  let functionCount = 0;\n  let linesOfCode = 0;\n  let maxCyclomaticComplexity = 0;\n  let maxCognitiveComplexity = 0;\n  let ncssCount = 0;\n  let callCount = 0;\n  let internalCallCount = 0;\n  let maxCallDepth = 0;\n  let importSourceCount = 0;\n  let relativeImportCount = 0;\n  let externalImportCount = 0;\n  let exportCount = 0;\n  let cohesionTotal = 0;\n  let typeAnnotationCount = 0;\n  let typeAliasCount = 0;\n  let interfaceCount = 0;\n  let genericParameterCount = 0;\n\n  for (const file of files) {\n    functionCount += file.metrics.functionCount;\n    linesOfCode += file.metrics.lines.code;\n    maxCyclomaticComplexity = Math.max(maxCyclomaticComplexity, file.metrics.maxCyclomaticComplexity);\n    maxCognitiveComplexity = Math.max(maxCognitiveComplexity, file.metrics.maxCognitiveComplexity);\n    ncssCount += file.metrics.ncssCount;\n    callCount += file.metrics.callGraph.callCount;\n    internalCallCount += file.metrics.callGraph.internalCallCount;\n    maxCallDepth = Math.max(maxCallDepth, file.metrics.callGraph.maxCallDepth);\n    importSourceCount += file.metrics.coupling.importSourceCount;\n    relativeImportCount += file.metrics.coupling.relativeImportCount;\n    externalImportCount += file.metrics.coupling.externalImportCount;\n    exportCount += file.metrics.coupling.exportCount;\n    cohesionTotal += file.metrics.cohesion.averageFunctionIdentifierOverlap;\n    typeAnnotationCount += file.metrics.typeComplexity.typeAnnotationCount;\n    typeAliasCount += file.metrics.typeComplexity.typeAliasCount;\n    interfaceCount += file.metrics.typeComplexity.interfaceCount;\n    genericParameterCount += file.metrics.typeComplexity.genericParameterCount;\n  }\n\n  return {\n    fileCount: files.length,\n    functionCount,\n    linesOfCode,\n    maxCyclomaticComplexity,\n    maxCognitiveComplexity,\n    ncssCount,\n    callCount,\n    internalCallCount,\n    maxCallDepth,\n    importSourceCount,\n    relativeImportCount,\n    externalImportCount,\n    exportCount,\n    averageFunctionIdentifierOverlap: files.length === 0 ? 0 : cohesionTotal / files.length,\n    typeAnnotationCount,\n    typeAliasCount,\n    interfaceCount,\n    genericParameterCount,\n  };\n}\n\nfunction shouldSkipDirectory(name: string, options: ResolvedOptions): boolean {\n  if (ignoredDirectoryNames.has(name)) {\n    return true;\n  }\n\n  if (options.includeTests) {\n    return false;\n  }\n\n  return testDirectoryNames.has(name);\n}\n\nfunction isWithinDirectory(candidate: string, directory: string): boolean {\n  const relative = path.relative(directory, candidate);\n  return relative === '' || (relative !== '..' && !relative.startsWith(`..${path.sep}`) && !path.isAbsolute(relative));\n}\n\nfunction getLanguage(file: string, options: ResolvedOptions, explicitTarget = false): LanguageName | undefined {\n  const lowerFile = file.toLowerCase();\n  if (\n    !explicitTarget &&\n    (lowerFile.endsWith('.d.ts') ||\n      lowerFile.endsWith('.d.mts') ||\n      lowerFile.endsWith('.d.cts') ||\n      lowerFile.endsWith('.min.js') ||\n      lowerFile.endsWith('.pnp.cjs'))\n  ) {\n    return undefined;\n  }\n\n  if (\n    !explicitTarget &&\n    !options.includeTests &&\n    (testFilePattern.test(path.basename(file)) || javaTestFilePattern.test(path.basename(file)))\n  ) {\n    return undefined;\n  }\n\n  // GCC treats an uppercase `.C` as C++; lowercasing first would misparse it with the C grammar.\n  if (path.extname(file) === '.C') {\n    return 'cpp';\n  }\n\n  return languageByExtension.get(path.extname(lowerFile));\n}\n\nfunction parsePercentInteger(value: string): number {\n  const parsed = parsePositiveInteger(value);\n  if (parsed > 100) {\n    throw new InvalidArgumentError('Expected an integer between 1 and 100.');\n  }\n  return parsed;\n}\n\nfunction parseNonNegativeInteger(value: string): number {\n  if (!/^\\d+$/u.test(value)) {\n    throw new InvalidArgumentError('Expected a non-negative integer.');\n  }\n\n  const parsed = Number(value);\n  if (!Number.isSafeInteger(parsed) || parsed < 0) {\n    throw new InvalidArgumentError('Expected a non-negative integer.');\n  }\n  return parsed;\n}\n\nfunction parsePositiveInteger(value: string): number {\n  if (!/^[1-9]\\d*$/u.test(value)) {\n    throw new InvalidArgumentError('Expected a positive integer.');\n  }\n\n  const parsed = Number(value);\n  if (!Number.isSafeInteger(parsed) || parsed < 1) {\n    throw new InvalidArgumentError('Expected a positive integer.');\n  }\n  return parsed;\n}\n\nfunction formatPath(file: string, base: string): string {\n  return path.relative(base, file) || path.basename(file);\n}\n\nfunction writeStdout(message: string): void {\n  process.stdout.write(message);\n}\n\nfunction writeStderr(message: string): void {\n  process.stderr.write(message);\n}\n\nfunction formatError(error: unknown): string {\n  return error instanceof Error ? error.message : 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+{"version":3,"file":"cli.cjs","names":["Command","configFileName","loadConfig","resolveOptions","os","path","stat","realpath","readdir","readFile","measureCode","collectCrossFileDuplicationFileData","measureCrossFileDuplication","InvalidArgumentError"],"sources":["../src/cli.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { readdir, readFile, realpath, stat } from 'node:fs/promises';\nimport os from 'node:os';\nimport path from 'node:path';\nimport { Command, InvalidArgumentError } from 'commander';\nimport { type CliOptions, configFileName, loadConfig, type ResolvedOptions, resolveOptions } from './cliConfig.js';\nimport { measureCrossFileDuplication, type CrossFileDuplicationMetrics } from './crossFileDuplication.js';\nimport type { CrossFileDuplicationFileData } from './duplication.js';\nimport { collectCrossFileDuplicationFileData, measureCode } from './metrics.js';\nimport type { CodeMetrics, FunctionMetrics, LanguageName } from './types.js';\n\ninterface FileMetrics {\n  file: string;\n  metrics: CodeMetrics;\n  /** Cross-file duplicate candidates and token/statement data, collected only for directory scans. */\n  duplicationCandidates?: CrossFileDuplicationFileData;\n}\n\ninterface ScanResult {\n  crossFileDuplication?: CrossFileDuplicationMetrics;\n  displayRoot: string;\n  errors: string[];\n  /** Non-fatal degradations (e.g. cross-file candidates unavailable); the file is still measured. */\n  warnings: string[];\n  fatalError?: string;\n  files: FileMetrics[];\n}\n\n/** The worst (highest-cognitive-complexity) function of a file, reported as the ranking evidence. */\ninterface WorstFunction {\n  name: string;\n  startLine: number;\n  endLine: number;\n  cognitiveComplexity: number;\n  ncss: number;\n  nestingDepth: number;\n}\n\n/**\n * One ranked refactoring candidate. The score is the sum of the file's repo-relative percentile\n * ranks (each in [0, 1)) over three dimensions: worst-function cognitive complexity, duplicated\n * lines (within-file and cross-file combined), and file NCSS. Ranking is relative to the scanned\n * project, so no absolute threshold is involved.\n */\ninterface RankedFile {\n  file: string;\n  score: number;\n  worstFunction?: WorstFunction;\n  /** Distinct lines covered by within-file duplicate blocks or cross-file duplicate occurrences. */\n  duplicatedLineCount: number;\n  /** duplicatedLineCount / code lines (0 when the file has no code). */\n  duplicatedLineRatio: number;\n  /** Other files sharing cross-file duplicate blocks; filled only for the reported top files. */\n  crossFilePartners: string[];\n  ncss: number;\n  codeLines: number;\n}\n\nconst languageByExtension = new Map<string, LanguageName>([\n  ['.c', 'c'],\n  ['.c++', 'cpp'],\n  ['.cc', 'cpp'],\n  ['.cjs', 'javascript'],\n  ['.cp', 'cpp'],\n  ['.cpp', 'cpp'],\n  ['.tcc', 'cpp'],\n  ['.cts', 'typescript'],\n  ['.cxx', 'cpp'],\n  ['.go', 'go'],\n  // Headers may be C or C++; the C++ grammar parses both.\n  ['.h', 'cpp'],\n  ['.hh', 'cpp'],\n  ['.hpp', 'cpp'],\n  ['.hxx', 'cpp'],\n  ['.java', 'java'],\n  ['.js', 'javascript'],\n  ['.jsx', 'jsx'],\n  ['.mjs', 'javascript'],\n  ['.mts', 'typescript'],\n  ['.py', 'python'],\n  ['.rb', 'ruby'],\n  ['.rs', 'rust'],\n  ['.ts', 'typescript'],\n  ['.tsx', 'tsx'],\n]);\n\nconst ignoredDirectoryNames = new Set([\n  '.agents',\n  '.claude',\n  '.cursor',\n  '.git',\n  '.next',\n  '.playwright-cli',\n  '.tox',\n  '.tmp',\n  '.turbo',\n  '.venv',\n  '.yarn',\n  '__fixtures__',\n  '__generated__',\n  '__pycache__',\n  'coverage',\n  'dist',\n  'fixtures',\n  'generated',\n  'node_modules',\n  'target',\n  'test-fixtures',\n  'vendor',\n  'venv',\n]);\n\n/** Caps how many cross-file partners a ranked file lists so the report stays scannable. */\nconst maxCrossFilePartners = 3;\n\nconst testDirectoryNames = new Set(['__tests__', 'test', 'tests', 'spec']);\nconst testFilePattern = /(?:^test(?:[_-].*)?|\\.(?:spec|test)|[_-](?:test|spec))\\.[^.]+$/iu;\n// JUnit tests use a case-sensitive `Test.java` suffix; case-insensitive matching would catch\n// production files like `contest.java`.\nconst javaTestFilePattern = /Test\\.java$/u;\n\n// oxlint-disable-next-line unicorn/prefer-top-level-await -- CommonJS build output cannot preserve top-level await.\nvoid main().catch((error: unknown) => {\n  writeStderr(`Error: ${formatError(error)}\\n`);\n  process.exitCode = 1;\n});\n\nasync function main(): Promise<void> {\n  const program = new Command()\n    .name('code-gauge')\n    .description('Rank the files of a project by refactoring priority.')\n    .argument('[target]', 'file or directory to measure', '.')\n    .option('--config <path>', `config file to use instead of the auto-detected ${configFileName}`)\n    .option('--top <number>', 'number of top-ranked files to report (default: 10)', parsePositiveInteger)\n    .option(\n      '--duplication-min-tokens <number>',\n      'minimum normalized token count for a duplicate region (default 40)',\n      parsePositiveInteger\n    )\n    .option(\n      '--duplication-max-gap-tokens <number>',\n      'maximum token gap merged into one gapped clone group; 0 disables merging (default 30)',\n      parseNonNegativeInteger\n    )\n    .option(\n      '--duplication-min-similarity-percent <number>',\n      'minimum similarity percent (1-100) for near-miss (Type-3) clone blocks; 100 reports exact matches only (default 70)',\n      parsePercentInteger\n    )\n    .option('--include-tests', 'include test files and test directories')\n    .option('--json', 'print JSON output')\n    .option('--fail-on-error', 'exit with code 1 when files or directories cannot be scanned');\n\n  program.action(async (target: string, cliOptions: CliOptions) => {\n    const resolvedTarget = resolveTarget(target);\n    const config = await loadConfig(cliOptions.config, await configSearchDirectory(resolvedTarget));\n    const options = resolveOptions(cliOptions, config);\n    const result = await scanTarget(resolvedTarget, options);\n    addCrossFileDuplication(result, options);\n    const rankedFiles = rankFiles(result, options.top);\n\n    if (options.json) {\n      printJson(result, rankedFiles, options);\n    } else {\n      printTextReport(resolvedTarget, result, rankedFiles, options);\n    }\n\n    if (result.fatalError || (options.failOnError && result.errors.length > 0)) {\n      process.exitCode = 1;\n    }\n  });\n\n  await program.parseAsync();\n}\n\nfunction resolveTarget(target: string): string {\n  if (target === '~') {\n    return os.homedir();\n  }\n\n  if (target.startsWith('~/')) {\n    return path.join(os.homedir(), target.slice(2));\n  }\n\n  return path.resolve(target);\n}\n\n/** Returns the directory from which the config file search should start (the target itself if it is a directory). */\nasync function configSearchDirectory(target: string): Promise<string> {\n  try {\n    const targetStat = await stat(target);\n    return targetStat.isDirectory() ? target : path.dirname(target);\n  } catch {\n    return path.dirname(target);\n  }\n}\n\n/** Shared state of one scan, threaded through the directory walk instead of positional plumbing. */\ninterface ScanContext {\n  options: ResolvedOptions;\n  files: FileMetrics[];\n  errors: string[];\n  warnings: string[];\n  visitedDirectories: Set<string>;\n  visitedFiles: Set<string>;\n  /** Scan root: paths are displayed relative to it, and symbolic links may not escape it. */\n  rootDirectory: string;\n}\n\nasync function scanTarget(target: string, options: ResolvedOptions): Promise<ScanResult> {\n  const files: FileMetrics[] = [];\n  const errors: string[] = [];\n  const warnings: string[] = [];\n  let canonicalTarget = target;\n  try {\n    canonicalTarget = await realpath(target);\n  } catch {\n    // stat below reports missing targets with the original path.\n  }\n\n  const fallbackDisplayRoot = path.dirname(canonicalTarget);\n  let targetStat;\n\n  try {\n    targetStat = await stat(canonicalTarget);\n  } catch (error) {\n    const fatalError = `${formatPath(canonicalTarget, fallbackDisplayRoot)}: ${formatError(error)}`;\n    return { displayRoot: fallbackDisplayRoot, files, errors: [fatalError], warnings, fatalError };\n  }\n\n  if (targetStat.isFile()) {\n    const displayRoot = path.dirname(canonicalTarget);\n    const language = getLanguage(canonicalTarget, options, true);\n    if (!language) {\n      const fatalError = `${formatPath(canonicalTarget, displayRoot)}: unsupported file type`;\n      return { displayRoot, files, errors: [fatalError], warnings, fatalError };\n    }\n\n    const context = makeScanContext(options, files, errors, warnings, displayRoot);\n    await measureFile(canonicalTarget, language, 'single-file', context, canonicalTarget);\n    return { displayRoot, files, errors, warnings };\n  }\n\n  await scanDirectory(canonicalTarget, makeScanContext(options, files, errors, warnings, canonicalTarget));\n  return { displayRoot: canonicalTarget, files, errors, warnings };\n}\n\nfunction makeScanContext(\n  options: ResolvedOptions,\n  files: FileMetrics[],\n  errors: string[],\n  warnings: string[],\n  rootDirectory: string\n): ScanContext {\n  return { options, files, errors, warnings, visitedDirectories: new Set(), visitedFiles: new Set(), rootDirectory };\n}\n\nasync function scanDirectory(directory: string, context: ScanContext): Promise<void> {\n  let resolvedDirectory;\n  try {\n    resolvedDirectory = await realpath(directory);\n  } catch (error) {\n    context.errors.push(`${formatPath(directory, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  if (!isWithinDirectory(resolvedDirectory, context.rootDirectory)) {\n    return;\n  }\n\n  if (context.visitedDirectories.has(resolvedDirectory)) {\n    return;\n  }\n  context.visitedDirectories.add(resolvedDirectory);\n\n  let entries;\n  try {\n    entries = await readdir(directory, { withFileTypes: true });\n  } catch (error) {\n    context.errors.push(`${formatPath(directory, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  for (const entry of entries) {\n    const entryPath = path.join(directory, entry.name);\n    if (entry.isSymbolicLink()) {\n      await scanSymbolicLink(entry.name, entryPath, context);\n      continue;\n    }\n\n    if (entry.isDirectory()) {\n      if (shouldSkipDirectory(entry.name, context.options)) {\n        continue;\n      }\n      await scanDirectory(entryPath, context);\n      continue;\n    }\n\n    if (entry.isFile()) {\n      await measureScannableFile(entryPath, context);\n    }\n  }\n}\n\nasync function scanSymbolicLink(name: string, entryPath: string, context: ScanContext): Promise<void> {\n  let resolvedPath;\n  try {\n    resolvedPath = await realpath(entryPath);\n  } catch (error) {\n    context.errors.push(`${formatPath(entryPath, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  if (!isWithinDirectory(resolvedPath, context.rootDirectory)) {\n    return;\n  }\n\n  let entryStat;\n  try {\n    entryStat = await stat(entryPath);\n  } catch (error) {\n    context.errors.push(`${formatPath(entryPath, context.rootDirectory)}: ${formatError(error)}`);\n    return;\n  }\n\n  if (entryStat.isDirectory()) {\n    if (\n      shouldSkipDirectory(name, context.options) ||\n      shouldSkipDirectory(path.basename(resolvedPath), context.options)\n    ) {\n      return;\n    }\n    await scanDirectory(entryPath, context);\n    return;\n  }\n\n  if (entryStat.isFile()) {\n    await measureScannableFile(entryPath, context, resolvedPath, resolvedPath);\n  }\n}\n\nasync function measureScannableFile(\n  file: string,\n  context: ScanContext,\n  languageFile = file,\n  realFile?: string\n): Promise<void> {\n  const language = getLanguage(languageFile, context.options);\n  if (language) {\n    await measureFile(file, language, 'directory', context, realFile);\n  }\n}\n\nasync function measureFile(\n  file: string,\n  language: LanguageName,\n  mode: 'single-file' | 'directory',\n  context: ScanContext,\n  realFile?: string\n): Promise<void> {\n  try {\n    const resolvedFile = realFile ?? (await realpath(file));\n    if (context.visitedFiles.has(resolvedFile)) {\n      return;\n    }\n    context.visitedFiles.add(resolvedFile);\n\n    const code = await readFile(file, 'utf8');\n    const measureOptions = { language, duplication: context.options.duplication };\n    const fileMetrics: FileMetrics = { file, metrics: measureCode(code, measureOptions) };\n    // Only directory scans compare files against each other; a single-file target has no peers.\n    // Candidate collection failing (it always parses with the JavaScript binding, which can give\n    // up where the native backend measured fine) must not discard the measured metrics.\n    if (mode === 'directory') {\n      try {\n        fileMetrics.duplicationCandidates = collectCrossFileDuplicationFileData(code, measureOptions);\n      } catch (error) {\n        // A warning, not an error: the file's metrics are complete, only its participation in\n        // cross-file matching is lost, so it is not \"skipped\" and must not fail --fail-on-error.\n        context.warnings.push(\n          `${formatPath(file, context.rootDirectory)}: cross-file duplication candidates unavailable: ${formatError(error)}`\n        );\n      }\n    }\n    context.files.push(fileMetrics);\n  } catch (error) {\n    context.errors.push(`${formatPath(file, context.rootDirectory)}: ${formatError(error)}`);\n  }\n}\n\n/** Runs after the scan so every measured file's candidates participate. */\nfunction addCrossFileDuplication(result: ScanResult, options: ResolvedOptions): void {\n  if (result.fatalError || result.files.length < 2) {\n    return;\n  }\n  const sourceFiles = result.files.flatMap(({ file, duplicationCandidates }) =>\n    duplicationCandidates ? [{ file: formatPath(file, result.displayRoot), ...duplicationCandidates }] : []\n  );\n  if (sourceFiles.length < 2) {\n    return;\n  }\n  result.crossFileDuplication = measureCrossFileDuplication(sourceFiles, options.duplication);\n}\n\nfunction rankFiles(result: ScanResult, top: number): RankedFile[] {\n  const candidates = result.files.map(({ file, metrics }) => {\n    const formattedFile = formatPath(file, result.displayRoot);\n    const duplicatedLines = collectDuplicatedLines(metrics, result.crossFileDuplication, formattedFile);\n    return {\n      file: formattedFile,\n      worstFunction: findWorstFunction(metrics.functions),\n      duplicatedLineCount: duplicatedLines.size,\n      duplicatedLineRatio: metrics.lines.code === 0 ? 0 : duplicatedLines.size / metrics.lines.code,\n      crossFilePartners: [] as string[],\n      ncss: metrics.ncssCount,\n      codeLines: metrics.lines.code,\n    };\n  });\n\n  const cognitivePercentile = makePercentile(candidates.map((c) => c.worstFunction?.cognitiveComplexity ?? 0));\n  const duplicationPercentile = makePercentile(candidates.map((c) => c.duplicatedLineCount));\n  const ncssPercentile = makePercentile(candidates.map((c) => c.ncss));\n\n  const ranked = candidates\n    .map((candidate) => ({\n      ...candidate,\n      score:\n        cognitivePercentile(candidate.worstFunction?.cognitiveComplexity ?? 0) +\n        duplicationPercentile(candidate.duplicatedLineCount) +\n        ncssPercentile(candidate.ncss),\n    }))\n    .toSorted(\n      (left, right) => right.score - left.score || right.ncss - left.ncss || left.file.localeCompare(right.file)\n    );\n  // Partner evidence is attached only to the files that will be reported: expanding partners for\n  // every scanned file first would retain TH(F^2) strings when one clone group spans F files, and\n  // rescanning all groups per file would be O(files x groups) on the post-scan ranking step.\n  attachCrossFilePartners(ranked.slice(0, top), result.crossFileDuplication);\n  return ranked;\n}\n\n/** One pass over the groups fills the reported files' partner lists (other files sharing a group). */\nfunction attachCrossFilePartners(\n  reportedFiles: RankedFile[],\n  crossFileDuplication: CrossFileDuplicationMetrics | undefined\n): void {\n  if (!crossFileDuplication) {\n    return;\n  }\n  const partnersByFile = new Map(reportedFiles.map((ranked) => [ranked.file, new Set<string>()]));\n  for (const group of crossFileDuplication.groups) {\n    for (const file of group.files) {\n      const partners = partnersByFile.get(file);\n      if (!partners) {\n        continue;\n      }\n      for (const partner of group.files) {\n        if (partner !== file) {\n          partners.add(partner);\n        }\n      }\n    }\n  }\n  for (const ranked of reportedFiles) {\n    ranked.crossFilePartners = [...(partnersByFile.get(ranked.file) ?? [])].toSorted();\n  }\n}\n\n/**\n * Percentile rank within the scanned project: the fraction of files with a strictly smaller\n * value, in [0, 1). Relative ranking needs no absolute threshold, which sidesteps the metric\n * calibration problem entirely — the top of the list is worth refactoring first regardless of\n * where any cutoff would sit.\n */\nfunction makePercentile(values: number[]): (value: number) => number {\n  const sorted = values.toSorted((left, right) => left - right);\n  return (value: number) => {\n    let low = 0;\n    let high = sorted.length;\n    while (low < high) {\n      const middle = (low + high) >> 1;\n      if ((sorted[middle] as number) < value) {\n        low = middle + 1;\n      } else {\n        high = middle;\n      }\n    }\n    return sorted.length === 0 ? 0 : low / sorted.length;\n  };\n}\n\n/** The highest-cognitive-complexity function; NCSS breaks ties so the larger body is reported. */\nfunction findWorstFunction(functions: FunctionMetrics[]): WorstFunction | undefined {\n  let worst: FunctionMetrics | undefined;\n  for (const fn of functions) {\n    if (\n      !worst ||\n      fn.cognitiveComplexity > worst.cognitiveComplexity ||\n      (fn.cognitiveComplexity === worst.cognitiveComplexity && fn.ncss > worst.ncss)\n    ) {\n      worst = fn;\n    }\n  }\n  if (!worst) {\n    return undefined;\n  }\n  return {\n    name: worst.name ?? '<anonymous>',\n    startLine: worst.startLine,\n    endLine: worst.endLine,\n    cognitiveComplexity: worst.cognitiveComplexity,\n    ncss: worst.ncss,\n    nestingDepth: worst.nestingDepth,\n  };\n}\n\n/**\n * Distinct 1-based code lines covered by within-file or cross-file duplicated content. Both\n * sources expose the exact lines carrying matched tokens (never block bounding ranges, which\n * would over-count comment/blank lines and the unmatched gap of a merged clone), so the union is\n * a subset of the file's code lines and the derived ratio can never exceed 1.\n */\nfunction collectDuplicatedLines(\n  metrics: CodeMetrics,\n  crossFileDuplication: CrossFileDuplicationMetrics | undefined,\n  formattedFile: string\n): Set<number> {\n  const lines = new Set(metrics.duplication.duplicateLineNumbers);\n  // Object.hasOwn: a file named like an Object.prototype member must not read an inherited value.\n  const crossFileLines =\n    crossFileDuplication && Object.hasOwn(crossFileDuplication.duplicateLineNumbersByFile, formattedFile)\n      ? (crossFileDuplication.duplicateLineNumbersByFile[formattedFile] ?? [])\n      : [];\n  for (const line of crossFileLines) {\n    lines.add(line);\n  }\n  return lines;\n}\n\nfunction printJson(result: ScanResult, rankedFiles: RankedFile[], options: ResolvedOptions): void {\n  const reportedFiles = rankedFiles.slice(0, options.top);\n  writeStdout(\n    JSON.stringify(\n      {\n        summary: summarize(result.files),\n        totalRankedFiles: rankedFiles.length,\n        truncated: reportedFiles.length < rankedFiles.length,\n        files: reportedFiles,\n        errors: result.errors,\n        warnings: result.warnings,\n      },\n      undefined,\n      2\n    ) + '\\n'\n  );\n}\n\nfunction printTextReport(\n  target: string,\n  result: ScanResult,\n  rankedFiles: RankedFile[],\n  options: ResolvedOptions\n): void {\n  if (result.fatalError) {\n    writeStderr(`Error: ${result.fatalError}\\n`);\n    return;\n  }\n\n  const summary = summarize(result.files);\n  writeStdout(\n    `Measured ${summary.fileCount} files under ${target} (code LOC ${summary.linesOfCode}, NCSS ${summary.ncssCount}, functions ${summary.functionCount})\\n`\n  );\n\n  if (rankedFiles.length === 0) {\n    writeStdout('No measurable files found.\\n');\n  } else {\n    const reportedFiles = rankedFiles.slice(0, options.top);\n    const totalSuffix = rankedFiles.length > reportedFiles.length ? ` of ${rankedFiles.length}` : '';\n    writeStdout(`\\nRefactoring candidates (top ${reportedFiles.length}${totalSuffix}):\\n`);\n    for (const [index, ranked] of reportedFiles.entries()) {\n      writeStdout(`${index + 1}. ${formatRankedFile(ranked)}\\n`);\n    }\n  }\n\n  if (result.warnings.length > 0) {\n    writeStderr(`\\nDegraded ${result.warnings.length} files (measured, but excluded from cross-file matching):\\n`);\n    for (const warning of result.warnings.slice(0, 10)) {\n      writeStderr(`- ${warning}\\n`);\n    }\n    if (result.warnings.length > 10) {\n      writeStderr(`- ... ${result.warnings.length - 10} more\\n`);\n    }\n  }\n\n  if (result.errors.length > 0) {\n    writeStderr(`\\nSkipped ${result.errors.length} files or directories:\\n`);\n    for (const error of result.errors.slice(0, 10)) {\n      writeStderr(`- ${error}\\n`);\n    }\n    if (result.errors.length > 10) {\n      writeStderr(`- ... ${result.errors.length - 10} more\\n`);\n    }\n  }\n}\n\n/** One ranked file as a single line: the location, the evidence, and where the duplication points. */\nfunction formatRankedFile(ranked: RankedFile): string {\n  const reasons: string[] = [];\n  if (ranked.worstFunction) {\n    const fn = ranked.worstFunction;\n    reasons.push(\n      `worst function ${fn.name} (L${fn.startLine}-${fn.endLine}) cognitive ${fn.cognitiveComplexity}, NCSS ${fn.ncss}, nesting ${fn.nestingDepth}`\n    );\n  }\n  if (ranked.duplicatedLineCount > 0) {\n    const partnersSuffix =\n      ranked.crossFilePartners.length > 0\n        ? `, shared with ${ranked.crossFilePartners.slice(0, maxCrossFilePartners).join(', ')}${ranked.crossFilePartners.length > maxCrossFilePartners ? ', ...' : ''}`\n        : '';\n    reasons.push(\n      `duplicated lines ${ranked.duplicatedLineCount} (${Math.round(ranked.duplicatedLineRatio * 100)}%${partnersSuffix})`\n    );\n  }\n  reasons.push(`file NCSS ${ranked.ncss}`);\n  return `${ranked.file} (score ${ranked.score.toFixed(2)}): ${reasons.join('; ')}`;\n}\n\nfunction summarize(files: FileMetrics[]): {\n  fileCount: number;\n  functionCount: number;\n  linesOfCode: number;\n  maxCognitiveComplexity: number;\n  ncssCount: number;\n} {\n  let functionCount = 0;\n  let linesOfCode = 0;\n  let maxCognitiveComplexity = 0;\n  let ncssCount = 0;\n\n  for (const file of files) {\n    functionCount += file.metrics.functions.length;\n    linesOfCode += file.metrics.lines.code;\n    maxCognitiveComplexity = Math.max(maxCognitiveComplexity, file.metrics.maxCognitiveComplexity);\n    ncssCount += file.metrics.ncssCount;\n  }\n\n  return { fileCount: files.length, functionCount, linesOfCode, maxCognitiveComplexity, ncssCount };\n}\n\nfunction shouldSkipDirectory(name: string, options: ResolvedOptions): boolean {\n  if (ignoredDirectoryNames.has(name)) {\n    return true;\n  }\n\n  if (options.includeTests) {\n    return false;\n  }\n\n  return testDirectoryNames.has(name);\n}\n\nfunction isWithinDirectory(candidate: string, directory: string): boolean {\n  const relative = path.relative(directory, candidate);\n  return relative === '' || (relative !== '..' && !relative.startsWith(`..${path.sep}`) && !path.isAbsolute(relative));\n}\n\nfunction getLanguage(file: string, options: ResolvedOptions, explicitTarget = false): LanguageName | undefined {\n  const lowerFile = file.toLowerCase();\n  if (\n    !explicitTarget &&\n    (lowerFile.endsWith('.d.ts') ||\n      lowerFile.endsWith('.d.mts') ||\n      lowerFile.endsWith('.d.cts') ||\n      lowerFile.endsWith('.min.js') ||\n      lowerFile.endsWith('.pnp.cjs'))\n  ) {\n    return undefined;\n  }\n\n  if (\n    !explicitTarget &&\n    !options.includeTests &&\n    (testFilePattern.test(path.basename(file)) || javaTestFilePattern.test(path.basename(file)))\n  ) {\n    return undefined;\n  }\n\n  // GCC treats an uppercase `.C` as C++; lowercasing first would misparse it with the C grammar.\n  if (path.extname(file) === '.C') {\n    return 'cpp';\n  }\n\n  return languageByExtension.get(path.extname(lowerFile));\n}\n\nfunction parsePercentInteger(value: string): number {\n  const parsed = parsePositiveInteger(value);\n  if (parsed > 100) {\n    throw new InvalidArgumentError('Expected an integer between 1 and 100.');\n  }\n  return parsed;\n}\n\nfunction parseNonNegativeInteger(value: string): number {\n  if (!/^\\d+$/u.test(value)) {\n    throw new InvalidArgumentError('Expected a non-negative integer.');\n  }\n\n  const parsed = Number(value);\n  if (!Number.isSafeInteger(parsed) || parsed < 0) {\n    throw new InvalidArgumentError('Expected a non-negative integer.');\n  }\n  return parsed;\n}\n\nfunction parsePositiveInteger(value: string): number {\n  if (!/^[1-9]\\d*$/u.test(value)) {\n    throw new InvalidArgumentError('Expected a positive integer.');\n  }\n\n  const parsed = Number(value);\n  if (!Number.isSafeInteger(parsed) || parsed < 1) {\n    throw new InvalidArgumentError('Expected a positive integer.');\n  }\n  return parsed;\n}\n\nfunction formatPath(file: string, base: string): string {\n  return path.relative(base, file) || path.basename(file);\n}\n\nfunction writeStdout(message: string): void {\n  process.stdout.write(message);\n}\n\nfunction writeStderr(message: string): void {\n  process.stderr.write(message);\n}\n\nfunction formatError(error: unknown): string {\n  return error instanceof Error ? error.message : 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