code-foundry 0.22.2 → 0.23.1

package/.github/actions/setup/action.yml

@@ -206,7 +206,6 @@ runs:
         javascript_package_manager=none
         configured_package_manager=""
         config_file=.github/code-foundry.yml
-        [ -f "$config_file" ] || config_file=.github/template.yml
         if [ -f "$config_file" ]; then
           configured_package_manager="$(awk -F': ' '/^package_manager:/ {print $2; exit}' "$config_file")"
         fi
@@ -389,7 +388,7 @@ runs:
             if [ "$javascript" = true ] && task_language_needed javascript; then
               add_configured_tool node
               if { [ -f bun.lock ] || [ -f bun.lockb ] ||
-                config_file=.github/code-foundry.yml; [ -f "$config_file" ] || config_file=.github/template.yml; awk -F': ' '/^package_manager:/ {print $2; exit}' "$config_file" 2>/dev/null | grep -qx bun; }; then
+                config_file=.github/code-foundry.yml; awk -F': ' '/^package_manager:/ {print $2; exit}' "$config_file" 2>/dev/null | grep -qx bun; }; then
                 add_configured_tool bun
               fi
             fi
@@ -403,7 +402,7 @@ runs:
           javascript)
             configured_tool node && mise_tools+=(node)
             if { [ -f bun.lock ] || [ -f bun.lockb ] ||
-              config_file=.github/code-foundry.yml; [ -f "$config_file" ] || config_file=.github/template.yml; awk -F': ' '/^package_manager:/ {print $2; exit}' "$config_file" 2>/dev/null | grep -qx bun; } && configured_tool bun; then
+              config_file=.github/code-foundry.yml; awk -F': ' '/^package_manager:/ {print $2; exit}' "$config_file" 2>/dev/null | grep -qx bun; } && configured_tool bun; then
               mise_tools+=(bun)
             fi
             ;;
@@ -451,12 +450,12 @@ runs:
         (inputs.cache-installed == 'true' ||
         steps.profile.outputs.javascript_package_manager == 'pnpm' ||
         steps.profile.outputs.javascript_package_manager == 'yarn') &&
-        hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/pnpm-lock.yaml', '**/yarn.lock', '**/package-lock.json', '**/.npmrc', '**/.yarnrc*', '**/.pnpmfile.cjs', '.github/code-foundry.yml', '.github/template.yml', '.mise.toml', 'mise.lock') != ''
+        hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/pnpm-lock.yaml', '**/yarn.lock', '**/package-lock.json', '**/.npmrc', '**/.yarnrc*', '**/.pnpmfile.cjs', '.github/code-foundry.yml', '.mise.toml', 'mise.lock') != ''
       uses: actions/cache/restore@v5
       with:
         path: |
           **/node_modules
-        key: ${{ runner.os }}-javascript-installed-v3-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/pnpm-lock.yaml', '**/yarn.lock', '**/package-lock.json', '**/.npmrc', '**/.yarnrc*', '**/.pnpmfile.cjs', '.github/code-foundry.yml', '.github/template.yml', '.mise.toml', 'mise.lock') }}
+        key: ${{ runner.os }}-javascript-installed-v3-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/pnpm-lock.yaml', '**/yarn.lock', '**/package-lock.json', '**/.npmrc', '**/.yarnrc*', '**/.pnpmfile.cjs', '.github/code-foundry.yml', '.mise.toml', 'mise.lock') }}
     - name: Restore Bun dependencies
       id: javascript-bun-cache-restore
       if: >-
@@ -465,12 +464,12 @@ runs:
         inputs.cache-installed != 'false' &&
         steps.profile.outputs.javascript_dependencies == 'true' &&
         steps.profile.outputs.javascript_package_manager == 'bun' &&
-        hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/.npmrc', '.github/code-foundry.yml', '.github/template.yml', '.mise.toml', 'mise.lock') != ''
+        hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/.npmrc', '.github/code-foundry.yml', '.mise.toml', 'mise.lock') != ''
       uses: actions/cache/restore@v5
       with:
         path: |
           **/node_modules
-        key: ${{ runner.os }}-javascript-installed-v4-bun-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/.npmrc', '.github/code-foundry.yml', '.github/template.yml', '.mise.toml', 'mise.lock') }}
+        key: ${{ runner.os }}-javascript-installed-v4-bun-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/.npmrc', '.github/code-foundry.yml', '.mise.toml', 'mise.lock') }}
     - name: Detect Bun dependencies
       id: javascript-bun-dependencies
       if: >-
@@ -737,7 +736,7 @@ runs:
       with:
         path: |
           **/node_modules
-        key: ${{ runner.os }}-javascript-installed-v4-bun-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/.npmrc', '.github/code-foundry.yml', '.github/template.yml', '.mise.toml', 'mise.lock') }}
+        key: ${{ runner.os }}-javascript-installed-v4-bun-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/.npmrc', '.github/code-foundry.yml', '.mise.toml', 'mise.lock') }}
     - name: Save installed JavaScript dependencies
       if: >-
         inputs.cache-save == 'true' &&
@@ -753,7 +752,7 @@ runs:
       with:
         path: |
           **/node_modules
-        key: ${{ runner.os }}-javascript-installed-v3-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/pnpm-lock.yaml', '**/yarn.lock', '**/package-lock.json', '**/.npmrc', '**/.yarnrc*', '**/.pnpmfile.cjs', '.github/code-foundry.yml', '.github/template.yml', '.mise.toml', 'mise.lock') }}
+        key: ${{ runner.os }}-javascript-installed-v3-${{ hashFiles('**/package.json', '**/bun.lock', '**/bun.lockb', '**/pnpm-lock.yaml', '**/yarn.lock', '**/package-lock.json', '**/.npmrc', '**/.yarnrc*', '**/.pnpmfile.cjs', '.github/code-foundry.yml', '.mise.toml', 'mise.lock') }}
     - name: Save JavaScript packages
       if: >-
         inputs.cache-save == 'true' &&

package/.github/code-foundry.yml

@@ -1,12 +1,11 @@
 # Canonical Code Foundry repository configuration.
 version: 1
-template: code-foundry@latest
 profile: auto
 languages: typescript
 features: all
 package_manager: bun
 runtime_repository: 0xPlayerOne/code-foundry
-runtime_ref: v0.22.0
+runtime_ref: v0.22.2
 release_type: node
 npm_publish: true
 license: agpl-3.0-or-later

package/.github/code-foundry.yml.example

@@ -1,5 +1,5 @@
-# Copy this file to .github/code-foundry.yml, edit the values you need, and run:
-#   npx code-foundry init --config .github/code-foundry.yml
+# `npx code-foundry init` creates this file automatically. Edit it and run
+# `npx code-foundry sync` whenever you want to change the baseline.
 # Omitted keys use automatic detection and the standard defaults. See
 # docs/CONFIGURATION.md for the complete visual reference.
 

package/.github/scripts/bootstrap.sh

@@ -4,6 +4,7 @@ set -euo pipefail
 git config core.hooksPath .githooks
 
 if command -v mise >/dev/null 2>&1; then
+  mise trust --yes .mise.toml >/dev/null 2>&1 || true
   if [ -f .mise.toml ] && [ ! -f mise.lock ]; then
     if MISE_TRUSTED_CONFIG_PATHS="$PWD" mise lock >/dev/null 2>&1; then
       printf '%s\n' 'Initialized mise.lock for deterministic CI tool installs.'

package/.github/scripts/changed-files.sh

@@ -72,7 +72,7 @@ repo_foundry_pr_dependencies_unchanged() {
   while IFS= read -r file; do
     case "$file" in
       .github/workflows/security.yml|.github/scripts/security.sh|.github/scripts/changed-files.sh|\
-      .github/actions/setup/action.yml|.github/code-foundry.yml|.github/template.yml|.mise.toml|mise.lock|\
+      .github/actions/setup/action.yml|.github/code-foundry.yml|.mise.toml|mise.lock|\
       .github/security-audit-allowlist.txt)
         return 1
         ;;

package/.github/scripts/ci.sh

@@ -95,7 +95,6 @@ package_manager() {
     configured="$(bash .github/scripts/profile.sh get package_manager 2>/dev/null || true)"
   else
     config_file=.github/code-foundry.yml
-    [ -f "$config_file" ] || config_file=.github/template.yml
     if [ -f "$config_file" ]; then
       configured="$(awk -F': ' '/^package_manager:/ {print $2; exit}' "$config_file")"
     fi

package/.github/scripts/codeql-languages.sh

@@ -27,7 +27,6 @@ if [ -x .github/scripts/profile.sh ]; then
   configured="$(bash .github/scripts/profile.sh get languages 2>/dev/null || true)"
 else
   config_file=.github/code-foundry.yml
-  [ -f "$config_file" ] || config_file=.github/template.yml
   if [ -f "$config_file" ]; then
     configured="$(awk -F': ' '/^languages:/ {print $2; exit}' "$config_file")"
   fi

package/.github/scripts/doctor.sh

@@ -5,7 +5,6 @@ errors=0
 
 configured_features="all"
 config_file=.github/code-foundry.yml
-[ -f "$config_file" ] || config_file=.github/template.yml
 if [ -f "$config_file" ]; then
   configured_features="$(awk -F': ' '/^features:/ {print $2; exit}' "$config_file")"
   [ -n "$configured_features" ] || configured_features="all"

package/.github/scripts/init-repo.sh

@@ -3,7 +3,6 @@ set -euo pipefail
 
 source="${REPO_FOUNDRY_SOURCE:-https://github.com/${GITHUB_REPOSITORY_OWNER:-OWNER}/code-foundry.git}"
 ref="main"
-config_file="${REPO_FOUNDRY_CONFIG:-}"
 profile="${REPO_FOUNDRY_PROFILE:-auto}"
 protection=false
 dry_run=false
@@ -67,7 +66,6 @@ Initialize or synchronize a repository from the shared baseline.
 Options:
   --source PATH_OR_URL       Template source (default: REPO_FOUNDRY_SOURCE or GitHub owner)
   --ref REF                  Template branch or tag (default: main)
-  --config PATH              Use a .github/code-foundry.yml configuration file
   --profile NAME             auto, application, monorepo, or minimal
   --languages LIST           auto or comma-separated: typescript,rust,python,solidity
   --features LIST            all or comma-separated optional features:
@@ -97,7 +95,6 @@ while [ "$#" -gt 0 ]; do
   case "$1" in
     --source) source="${2:?missing source path or URL}"; shift 2 ;;
     --ref) ref="${2:?missing ref}"; shift 2 ;;
-    --config) config_file="${2:?missing config path}"; shift 2 ;;
     --profile) profile="${2:?missing profile}"; profile_set=true; shift 2 ;;
     --languages) languages="${2:?missing language list}"; languages_set=true; shift 2 ;;
     --features) features="${2:?missing feature list}"; features_set=true; shift 2 ;;
@@ -121,16 +118,7 @@ while [ "$#" -gt 0 ]; do
   esac
 done
 
-if [ -n "$config_file" ]; then
-  [ -f "$config_file" ] || { printf 'Configuration file not found: %s\n' "$config_file" >&2; exit 1; }
-  mkdir -p .github
-  if [ "$(cd -- "$(dirname -- "$config_file")" && pwd)/$(basename -- "$config_file")" != "$(pwd)/.github/code-foundry.yml" ]; then
-    cp "$config_file" .github/code-foundry.yml
-  fi
-fi
-
 config_path=.github/code-foundry.yml
-[ -f "$config_path" ] || config_path=.github/template.yml
 if [ -f "$config_path" ]; then
   config_value() {
     awk -F': ' -v key="$1" '$1 == key { value=$2; sub(/[[:space:]]+#.*/, "", value); gsub(/^[[:space:]]+|[[:space:]]+$/, "", value); print value; exit }' "$config_path"
@@ -175,7 +163,7 @@ if [ -f "$config_path" ]; then
 fi
 
 case "$package_manager" in
-  auto|bun|pnpm|yarn|npm) ;;
+  auto|none|bun|pnpm|yarn|npm) ;;
   *) printf 'Unsupported package manager: %s\n' "$package_manager" >&2; exit 2 ;;
 esac
 case "$release_type" in
@@ -210,7 +198,7 @@ if [ -n "$license_file" ]; then sync_args+=(--license-file "$license_file"); fi
 if [ "$dry_run" = true ]; then sync_args+=(--check); else sync_args+=(--apply); fi
 if [ "$prune" = true ]; then sync_args+=(--prune); fi
 if [ "$force" = true ]; then sync_args+=(--force); fi
-bash "$sync_script" "${sync_args[@]}"
+REPO_FOUNDRY_INIT=true bash "$sync_script" "${sync_args[@]}"
 
 if [ "$dry_run" = true ]; then
   printf '%s\n' 'Dry run complete; no files were changed.'
@@ -221,7 +209,6 @@ mkdir -p .github
 config_value() {
   awk -F': ' -v key="$1" '$1 == key { value=$2; sub(/[[:space:]]+#.*/, "", value); gsub(/^[[:space:]]+|[[:space:]]+$/, "", value); print value; exit }' .github/code-foundry.yml
 }
-template_ref="$(config_value template 2>/dev/null || true)"
 profile="$(config_value profile 2>/dev/null || true)"
 languages="$(config_value languages 2>/dev/null || true)"
 features="$(config_value features 2>/dev/null || true)"
@@ -233,9 +220,6 @@ npm_publish="$(config_value npm_publish 2>/dev/null || true)"
 license="$(config_value license 2>/dev/null || true)"
 {
   printf 'version: 1\n'
-  if [ -n "$template_ref" ]; then
-    printf 'template: %s\n' "$template_ref"
-  fi
   printf 'profile: %s\n' "$profile"
   printf 'languages: %s\n' "$languages"
   printf 'features: %s\n' "$features"
@@ -263,11 +247,6 @@ license="$(config_value license 2>/dev/null || true)"
   printf 'turbo_remote: %s\n' "$turbo_remote"
 } > .github/code-foundry.yml
 
-if [ "$config_path" = .github/template.yml ] && [ -f .github/template.yml ]; then
-  rm .github/template.yml
-  printf '%s\n' 'Migrated .github/template.yml to .github/code-foundry.yml.'
-fi
-
 if [ "$bootstrap" = false ]; then
   printf '%s\n' 'Bootstrap skipped.'
   exit 0

package/.github/scripts/profile.sh

@@ -3,8 +3,7 @@ set -euo pipefail
 
 # Resolve repository settings with this precedence:
 # explicit REPO_FOUNDRY_* values (CLI callers can export them), then
-# .github/code-foundry.yml, then detected defaults. A legacy
-# .github/template.yml is accepted during migration.
+# .github/code-foundry.yml, then detected defaults.
 
 root="${REPO_FOUNDRY_ROOT:-$PWD}"
 command="detect"
@@ -33,7 +32,6 @@ done
 
 cd "$root"
 template_file=.github/code-foundry.yml
-[ -f "$template_file" ] || template_file=.github/template.yml
 
 config_value() {
   local key="$1"

package/.github/scripts/security.sh

@@ -107,7 +107,6 @@ package_manager() {
     configured="$(bash .github/scripts/profile.sh get package_manager 2>/dev/null || true)"
   else
     config_file=.github/code-foundry.yml
-    [ -f "$config_file" ] || config_file=.github/template.yml
     if [ -f "$config_file" ]; then
       configured="$(awk -F': ' '/^package_manager:/ {print $2; exit}' "$config_file")"
     fi

package/.github/scripts/sync-protection.sh

@@ -8,7 +8,6 @@ configured_features="all"
 configured_languages="auto"
 
 config_file=.github/code-foundry.yml
-[ -f "$config_file" ] || config_file=.github/template.yml
 if [ -f "$config_file" ]; then
   configured_features="$(awk -F': ' '/^features:/ {print $2; exit}' "$config_file")"
   configured_languages="$(awk -F': ' '/^languages:/ {print $2; exit}' "$config_file")"

package/.github/scripts/sync-template.sh

@@ -13,7 +13,6 @@ Options:
   --languages LIST  auto or comma-separated: typescript,rust,python,solidity
   --features LIST   all or comma-separated standard features
   --package-manager NAME  auto, bun, pnpm, yarn, or npm
-  --config PATH  Use a .github/code-foundry.yml configuration file
   --runtime-repository OWNER/REPO  Reusable workflow runtime repository
   --runtime-ref REF  Reusable workflow runtime tag or branch
   --license NAME     preserve, agpl-3.0-or-later, mit, or none
@@ -28,7 +27,6 @@ EOF
 source_ref="main"
 mode="check"
 source=""
-config_file="${REPO_FOUNDRY_CONFIG:-}"
 temp_dir=""
 profile="${REPO_FOUNDRY_PROFILE:-auto}"
 languages="${REPO_FOUNDRY_LANGUAGES:-auto}"
@@ -51,7 +49,6 @@ runtime_repository_set=false
 [ -n "${REPO_FOUNDRY_RUNTIME_REPOSITORY:-}" ] && runtime_repository_set=true
 runtime_ref_set=false
 [ -n "${REPO_FOUNDRY_RUNTIME_REF:-}" ] && runtime_ref_set=true
-template_ref=""
 release_type="${REPO_FOUNDRY_RELEASE_TYPE:-auto}"
 npm_publish="${REPO_FOUNDRY_NPM_PUBLISH:-false}"
 prune_standard="${REPO_FOUNDRY_PRUNE_STANDARD:-false}"
@@ -127,7 +124,6 @@ while [ "$#" -gt 0 ]; do
   case "$1" in
     --source) source="${2:?missing source path or URL}"; shift 2 ;;
     --ref) source_ref="${2:?missing ref}"; shift 2 ;;
-    --config) config_file="${2:?missing config path}"; shift 2 ;;
     --profile) profile="${2:?missing profile}"; profile_set=true; shift 2 ;;
     --languages) languages="${2:?missing language list}"; languages_set=true; shift 2 ;;
     --features) features="${2:?missing feature list}"; features_set=true; shift 2 ;;
@@ -146,15 +142,11 @@ while [ "$#" -gt 0 ]; do
 done
 
 [ -n "$source" ] || { usage >&2; exit 2; }
-if [ -n "$config_file" ]; then
-  [ -f "$config_file" ] || { printf 'Configuration file not found: %s\n' "$config_file" >&2; exit 1; }
-  mkdir -p .github
-  if [ "$(cd -- "$(dirname -- "$config_file")" && pwd)/$(basename -- "$config_file")" != "$(pwd)/.github/code-foundry.yml" ]; then
-    cp "$config_file" .github/code-foundry.yml
-  fi
-fi
 config_path=.github/code-foundry.yml
-[ -f "$config_path" ] || config_path=.github/template.yml
+[ -f "$config_path" ] || [ "${REPO_FOUNDRY_INIT:-false}" = true ] || {
+  printf '%s\n' 'Missing .github/code-foundry.yml; run `npx code-foundry init` first.' >&2
+  exit 1
+}
 if [ -f "$config_path" ]; then
   config_value() {
     awk -F': ' -v key="$1" '$1 == key { value=$2; sub(/[[:space:]]+#.*/, "", value); gsub(/^[[:space:]]+|[[:space:]]+$/, "", value); print value; exit }' "$config_path"
@@ -180,7 +172,6 @@ if [ -f "$config_path" ]; then
   if [ "$runtime_ref_set" = false ]; then
     runtime_ref="$(config_value runtime_ref)"
   fi
-  template_ref="$(config_value template)"
   if [ "$release_type_set" != true ]; then
     configured_release_type="$(config_value release_type)"
     [ -n "$configured_release_type" ] && release_type="$configured_release_type"
@@ -244,7 +235,7 @@ case "$runtime_repository" in
   *) printf 'Runtime repository must be OWNER/REPO: %s\n' "$runtime_repository" >&2; exit 2 ;;
 esac
 case "$package_manager" in
-  auto|bun|pnpm|yarn|npm) ;;
+  auto|none|bun|pnpm|yarn|npm) ;;
   *) printf 'Unsupported package manager: %s\n' "$package_manager" >&2; exit 2 ;;
 esac
 validate_list language "$languages" "$valid_languages"
@@ -280,7 +271,6 @@ fi
 # Prefer an explicit CLI/environment value, then the target's saved contract,
 # then the source template's contract, and finally the stable public runtime.
 source_config="$template_root/.github/code-foundry.yml"
-[ -f "$source_config" ] || source_config="$template_root/.github/template.yml"
 if [ -z "$runtime_ref" ] && [ -f "$source_config" ]; then
   runtime_ref="$(awk -F': ' '/^runtime_ref:/ {print $2; exit}' "$source_config")"
 fi
@@ -311,11 +301,6 @@ if [ -f "$template_root/.github/scripts/profile.sh" ]; then
   npm_publish="$(printf '%s\n' "$profile_output" | awk -F= '$1 == "npm_publish" {print substr($0, index($0, "=") + 1)}')"
 fi
 
-if [ -f "$template_root/package.json" ]; then
-  template_version="$(awk -F'"' '/"version"[[:space:]]*:/ {print $4; exit}' "$template_root/package.json")"
-  [ -n "$template_version" ] && template_ref="code-foundry@$template_version"
-fi
-
 files=(
   .editorconfig
   .gitattributes
@@ -472,7 +457,6 @@ done
 source_runtime_repository=""
 source_runtime_ref=""
 source_config="$template_root/.github/code-foundry.yml"
-[ -f "$source_config" ] || source_config="$template_root/.github/template.yml"
 if [ -f "$source_config" ]; then
   source_runtime_repository="$(awk -F': ' '/^runtime_repository:/ {print $2; exit}' "$source_config")"
   source_runtime_ref="$(awk -F': ' '/^runtime_ref:/ {print $2; exit}' "$source_config")"
@@ -671,9 +655,6 @@ if [ "$mode" = "apply" ]; then
   mkdir -p .github
   {
     printf 'version: 1\n'
-    if [ -n "$template_ref" ]; then
-      printf 'template: %s\n' "$template_ref"
-    fi
     printf 'profile: %s\n' "$profile"
     printf 'languages: %s\n' "$languages"
     printf 'features: %s\n' "$features"
@@ -702,10 +683,6 @@ if [ "$mode" = "apply" ]; then
       printf 'license_file: %s\n' "$license_file"
     fi
   } > .github/code-foundry.yml
-  if [ "$config_path" = .github/template.yml ] && [ -f .github/template.yml ]; then
-    rm .github/template.yml
-    printf '%s\n' 'Migrated .github/template.yml to .github/code-foundry.yml.'
-  fi
 fi
 
 if [ "$prune" = true ]; then

package/.github/workflows/reusable-release.yml

@@ -48,7 +48,6 @@ jobs:
             npm_publish="$(bash .github/scripts/profile.sh get npm_publish)"
           else
             config_file=.github/code-foundry.yml
-            [ -f "$config_file" ] || config_file=.github/template.yml
             release_type="$(awk -F': ' '/^release_type:/ {print $2; exit}' "$config_file" 2>/dev/null || true)"
             npm_publish="$(awk -F': ' '/^npm_publish:/ {print $2; exit}' "$config_file" 2>/dev/null || true)"
           fi

package/CHANGELOG.md

@@ -1,5 +1,19 @@
 # Changelog
 
+## [0.23.1](https://github.com/0xPlayerOne/code-foundry/compare/v0.23.0...v0.23.1) (2026-07-28)
+
+
+### Bug Fixes
+
+* support repositories without package managers ([a126945](https://github.com/0xPlayerOne/code-foundry/commit/a126945d259875763ce89ddb3c0dbc182b74bb76))
+
+## [0.23.0](https://github.com/0xPlayerOne/code-foundry/compare/v0.22.2...v0.23.0) (2026-07-28)
+
+
+### Features
+
+* simplify initialization and synchronization ([9f4643e](https://github.com/0xPlayerOne/code-foundry/commit/9f4643e854a262eb923a4fe84ddb986c3f1bdf77))
+
 ## [0.22.2](https://github.com/0xPlayerOne/code-foundry/compare/v0.22.1...v0.22.2) (2026-07-28)
 
 

package/README.md

@@ -18,25 +18,20 @@ Run this from the root of a repository:
 npx code-foundry init
 ```
 
-Useful variants:
+Initialization is repository-aware. It detects supported languages, package
+manager, profile, release strategy, and required mise tools, then writes the
+resolved choices to `.github/code-foundry.yml`.
 
 ```bash
-# Choose languages and the package manager
-npx code-foundry init --languages typescript,python --package-manager bun
-
-# Choose a license
-npx code-foundry init --license mit
-
-# Preview without changing files
-npx code-foundry init --dry-run
+# Review or change the generated configuration, then render it
+npx code-foundry sync
 ```
 
 For an existing installation, use `npx code-foundry sync`. Run
 `npx code-foundry doctor` to inspect the resulting repository configuration.
 
-If `.github/code-foundry.yml` already exists, initialization uses it automatically.
-You can also supply a different file with `--config PATH`; after changing the
-file, run `npx code-foundry sync` to render the selected configuration.
+If `.github/code-foundry.yml` already exists, `init` uses it as the repository
+contract. For normal updates, edit that file and run `npx code-foundry sync`.
 
 ## What it installs
 
@@ -56,31 +51,15 @@ preserved and can coexist with the standard baseline.
 
 ## Configuration
 
-Initialization is flag-driven. The most important options are:
-
-```text
---profile auto|application|monorepo|minimal
---languages auto|typescript,rust,python,solidity
---features all|ci,codeql,security,test,draft-pr,release-pr,release,dependabot
---package-manager auto|bun|pnpm|yarn|npm
---runtime-repository OWNER/REPO
---runtime-ref TAG_OR_BRANCH
---release-type auto|node|python|rust|simple|none
---license agpl-3.0-or-later|mit|preserve|none
---license-file PATH
-```
-
-The selected profile is saved in `.github/code-foundry.yml`. Explicit flags take
-precedence over `REPO_FOUNDRY_*` environment/repository variables, which take
-precedence over that file and automatic detection. See
+The generated configuration is the one place to control the baseline. See
 [Configuration reference](docs/CONFIGURATION.md) for the visual configuration
 guide and [Initialization and synchronization](docs/INITIALIZATION.md) for
-the safety and precedence rules.
+the two-command workflow.
 
 New repositories default to AGPL-3.0-or-later. Synchronization preserves an
 existing license unless a replacement is explicitly selected. Authored
 documentation, application files, custom workflows, and existing `.mise.toml`
-files are preserved by default; use `--force` or `--prune` only intentionally.
+files are preserved by default.
 
 ## Workflow model
 

package/docs/CONFIGURATION.md

@@ -1,26 +1,26 @@
 # Configuration reference
 
-`.github/code-foundry.yml` is the repository's single Code Foundry control plane.
-Initialize from it with:
+Code Foundry has one repository-owned control plane: `.github/code-foundry.yml`.
 
 ```bash
-npx code-foundry init --config .github/code-foundry.yml
+npx code-foundry init
 ```
 
-After initialization, edit the file and run `npx code-foundry sync` to render
-the selected callers and refresh the local baseline. Existing authored files
-and custom workflows remain protected.
+Initialization detects the repository and writes a fully resolved configuration.
+Edit that file directly, then run `npx code-foundry sync`.
 
 ## Configuration flow
 
 ```text
-code-foundry.yml
-    |
-    +--> profile and language detection
-    +--> enabled standard workflow callers
-    +--> runtime repository and ref
-    +--> workflow runner selection
-    +--> release, license, cache, and coverage policy
+repository manifests and source
+            |
+            v
+  .github/code-foundry.yml
+            |
+            +--> mise and environment setup
+            +--> standard workflow callers
+            +--> runtime repository and version
+            +--> release, license, cache, and coverage policy
 ```
 
 ## Core settings
@@ -28,60 +28,25 @@ code-foundry.yml
 | Key | Values | Purpose |
 | --- | --- | --- |
 | `profile` | `auto`, `application`, `monorepo`, `minimal` | Repository shape |
-| `languages` | `auto` or comma-separated languages | Toolchain and CodeQL scope |
-| `package_manager` | `auto`, `bun`, `pnpm`, `yarn`, `npm` | Locked JavaScript setup |
-| `features` | `all` or comma-separated names | Standard callers to install |
-| `prune_standard` | `true` or `false` | Remove disabled standard callers on sync |
-| `runtime_repository` | `OWNER/REPO` or blank | Reusable workflow source |
+| `languages` | detected list | TypeScript, Rust, Python, Solidity |
+| `package_manager` | `bun`, `pnpm`, `yarn`, `npm`, `none` | JavaScript setup |
+| `features` | `all` or a list | Standard workflow callers |
+| `prune_standard` | `true` or `false` | Remove disabled standard callers |
+| `runtime_repository` | `OWNER/REPO` | Reusable workflow source |
 | `runtime_ref` | tag or branch | Reusable workflow version |
-| `release_type` | `auto`, `node`, `python`, `rust`, `simple`, `none` | Release Please strategy |
+| `release_type` | `node`, `python`, `rust`, `simple`, `none` | Release strategy |
 | `npm_publish` | `true` or `false` | Opt into npm publication |
-| `license` | license name, `preserve`, `none` | License generation policy |
-| `license_file` | path | Optional exact license source |
+| `license` | license name, `preserve`, `none` | License policy |
+| `runner` fields | GitHub runner names | Per-workflow runner policy |
 
-Supported languages are TypeScript, Rust, Python, and Solidity. Supported
-features are `ci`, `codeql`, `security`, `test`, `draft-pr`, `release-pr`,
-`release`, and `dependabot`.
+Supported features are `ci`, `codeql`, `security`, `test`, `draft-pr`,
+`release-pr`, `release`, and `dependabot`.
 
-## Workflow runners
+## Editing workflow
 
-Each caller can select its default runner without editing workflow YAML:
+`init` creates the file and renders the baseline. `sync` reads the file and
+refreshes standard files from the configured runtime. Generated callers are
+short and replaceable; custom workflows and project documentation are kept.
 
-| Key | Default | Controls |
-| --- | --- | --- |
-| `runner` | `ubuntu-latest` | Shared fallback |
-| `unit_runner` | `ubuntu-slim` | Unit tests |
-| `ci_runner` | `ubuntu-latest` | Format, lint, type-check, build |
-| `test_runner` | `ubuntu-latest` | Integration, E2E, smoke |
-| `security_runner` | `ubuntu-slim` | Profile and dependency security jobs |
-| `codeql_runner` | `ubuntu-latest` | CodeQL detection and analyzers |
-| `pr_runner` | `ubuntu-slim` | Draft and Release PR automation |
-| `release_runner` | `ubuntu-slim` | Release and package publication |
-
-Use the full runner for native toolchains, browsers, or measured dependency
-workloads. Use `ubuntu-slim` for lightweight orchestration and small projects.
-
-## Performance and quality
-
-| Key | Default | Purpose |
-| --- | --- | --- |
-| `cache_packages` | `auto` | Package-store caching policy |
-| `cache_build` | `auto` | Build-cache policy |
-| `coverage_minimum` | `80` | Shared Bun/Python coverage target |
-| `turbo_remote` | `auto` | Turborepo remote-cache policy |
-
-Turborepo remote caching still requires the repository secret `TURBO_TOKEN` and
-the variable `TURBO_TEAM`; the file controls policy, not credentials.
-
-## Precedence
-
-The resolved value order is:
-
-```text
-explicit CLI flag -> REPO_FOUNDRY_* variable -> code-foundry.yml -> detection/default
-```
-
-Use variables for temporary CI overrides. Keep durable repository policy in
-`.github/code-foundry.yml` so humans and agents have one discoverable source of
-truth. The example file is a commented starter guide; it is intentionally not
-a second generated configuration.
+The generated configuration includes all defaults so humans and agents can
+understand the repository without memorizing flags or environment variables.

package/docs/INITIALIZATION.md

@@ -1,67 +1,42 @@
 # Initialization and synchronization
 
-## Commands
+## The two-command workflow
 
-Run the package from a repository root:
+Run these commands from a repository root:
 
 ```bash
-npx code-foundry init [options]
-npx code-foundry sync [options]
+npx code-foundry init
+npx code-foundry sync
 npx code-foundry doctor
 ```
 
-When `.github/code-foundry.yml` already exists, `init` treats it as the primary
-configuration and does not replace its values with CLI defaults. To use another
-file, pass it explicitly:
+`init` detects supported languages, package manager, repository profile,
+release strategy, mise tools, and standard features. It writes the resolved
+choices to `.github/code-foundry.yml`, initializes the local environment, and
+renders the standard baseline.
 
-```bash
-npx code-foundry init --config ./configs/code-foundry.yml
-```
-
-The file is copied to `.github/code-foundry.yml`, normalized, and used to render
-the standard callers. Later edits can be applied with `npx code-foundry sync`.
-
-Use `--dry-run` to preview changes. Use `--no-bootstrap` when the repository is
-being initialized in CI or on a machine without mise. Run
-`bash .github/scripts/bootstrap.sh` later to install tools, enable hooks, and
-run the repository doctor.
-
-## Profiles and features
+After reviewing or editing the configuration, run `sync` to apply it. Sync can
+be run at any time to pull in a newer runtime configured by `runtime_ref`.
 
-Supported languages are `typescript`, `rust`, `python`, and `solidity`.
-`--languages auto` detects them from manifests and source files. Profiles are
-`auto`, `application`, `monorepo`, and `minimal`.
+## Detection
 
-Standard features are `ci`, `codeql`, `security`, `test`, `draft-pr`,
-`release-pr`, `release`, and `dependabot`. `all` enables every standard
-feature. `--prune` removes disabled standard workflows only; it never removes
-custom workflows.
+Supported languages are TypeScript, Rust, Python, and Solidity. Detection uses
+manifests, lockfiles, source extensions, workspace metadata, and existing
+project scripts. The generated values are explicit, so later syncs are stable
+until a maintainer changes the file.
 
 ## Runtime selection
 
-Reusable workflow callers require a literal repository and ref. By default,
-the initializer derives the runtime repository from the source template. Use
-these options for a fork or a staged runtime:
-
-```bash
-npx code-foundry init \
-  --runtime-repository OWNER/REPO \
-  --runtime-ref v1.2.3
-```
-
-Both values are persisted in `.github/code-foundry.yml` and rendered into the
-standard callers. `REPO_FOUNDRY_RUNTIME_REPOSITORY` and
-`REPO_FOUNDRY_RUNTIME_REF` provide equivalent environment/repository-variable
-overrides.
+Workflow callers use `runtime_repository` and `runtime_ref` from
+`.github/code-foundry.yml`. Change those values directly for a fork or staged
+runtime, then run sync.
 
-## Safety rules
+## Preservation rules
 
-Synchronization preserves authored README and policy documents, existing
-`.mise.toml` selections, application code, custom workflows, and repository
-documentation. Existing licenses are preserved unless a license or license
-file is explicitly selected. Use `--force` only when intentionally refreshing
-protected standard documents.
+Sync updates standard Code Foundry files only. It preserves application code,
+authored documentation, existing `.mise.toml` selections, and custom workflows
+such as deployment, search, Slither, or monitoring workflows.
 
-The initializer generates `.github/code-foundry.yml` as the repository-owned
-configuration contract. Keep project-specific settings there rather than
-editing generated workflow callers by hand.
+The environment bootstrap installs or reuses mise-managed tools, enables the
+repository hooks, and runs the repository doctor. Re-run
+`bash .github/scripts/bootstrap.sh` if local tools need to be repaired.

package/docs/WORKFLOWS.md

@@ -58,7 +58,8 @@ Use the initializer's protection helper after reviewing the repository's
 enabled features:
 
 ```bash
-bash .github/scripts/init-repo.sh --protection
+Use the repository's GitHub settings or the maintainer's branch-protection
+automation to apply required checks after initialization.
 ```
 
 Keep strict status checks, linear history, and conversation resolution enabled.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "code-foundry",
-  "version": "0.22.2",
+  "version": "0.23.1",
   "description": "A fast, language-aware repository factory for agent-ready workflows, testing, security, and release automation.",
   "type": "module",
   "license": "AGPL-3.0-or-later",

package/src/cli.mjs

@@ -10,31 +10,19 @@ const packageRoot = resolve(fileURLToPath(new URL('..', import.meta.url)))
 const usage = `code-foundry — initialize and maintain agent-ready repositories
 
 Usage:
-  code-foundry init [options]
-  code-foundry sync [options]
-  code-foundry doctor [--target PATH]
+  npx code-foundry init [--target PATH]
+  npx code-foundry sync [--target PATH]
+  npx code-foundry doctor [--target PATH]
 
-Init/sync options:
-  --target PATH             Repository directory (default: current directory)
-  --source PATH_OR_URL      Template source override
-  --ref REF                 Template branch or tag (default: main)
-  --config PATH             Use a .github/code-foundry.yml configuration file
-  --profile NAME            auto, application, monorepo, or minimal
-  --languages LIST          auto or typescript,rust,python,solidity
-  --features LIST           all or ci,codeql,security,test,draft-pr,release-pr,release,dependabot
-  --package-manager NAME    auto, bun, pnpm, yarn, or npm
-  --runtime-repository OWNER/REPO  Reusable workflow runtime repository
-  --runtime-ref REF          Reusable workflow runtime tag or branch
-  --release-type NAME        auto, node, python, rust, simple, or none
-  --license NAME             agpl-3.0-or-later, mit, preserve, or none
-  --license-file PATH        Use an exact custom license file
-  --npm-publish              Enable npm publication in the release workflow
-  --dry-run                 Preview changes without writing files
-  --force                   Replace protected standard docs/templates
-  --prune                   Remove disabled standard workflows
-  --protection              Synchronize main branch protections (init only)
-  --no-bootstrap            Skip mise/hooks/doctor bootstrap after init
-  -h, --help                Show this help
+The repository configuration lives in .github/code-foundry.yml.
+init detects the repository, creates that file, and renders the baseline.
+sync reads it and refreshes standard files from the configured runtime.
+
+Options:
+  --target PATH   Repository directory (default: current directory)
+  --dry-run       Preview changes without writing files
+  --force         Replace protected standard documents
+  -h, --help      Show this help
 `
 
 function fail(message) {
@@ -44,55 +32,7 @@ function fail(message) {
 
 function parseArgs(argv) {
   const command = argv[0] && !argv[0].startsWith('-') ? argv.shift() : 'init'
-  const options = {
-    target: process.cwd(),
-    source: packageRoot,
-    ref: 'main',
-    config: process.env.REPO_FOUNDRY_CONFIG || '',
-    profile: process.env.REPO_FOUNDRY_PROFILE || 'auto',
-    languages: process.env.REPO_FOUNDRY_LANGUAGES || 'auto',
-    features: process.env.REPO_FOUNDRY_FEATURES || 'all',
-    packageManager: process.env.REPO_FOUNDRY_PACKAGE_MANAGER || 'auto',
-    // Leave this empty unless the caller explicitly selects a runtime. The
-    // initializer can then derive the runtime from --source, which keeps
-    // organization forks plug-and-play.
-    runtimeRepository: process.env.REPO_FOUNDRY_RUNTIME_REPOSITORY || '',
-    runtimeRef: process.env.REPO_FOUNDRY_RUNTIME_REF || '',
-    releaseType: process.env.REPO_FOUNDRY_RELEASE_TYPE || 'auto',
-    license: process.env.REPO_FOUNDRY_LICENSE || (command === 'init' ? 'agpl-3.0-or-later' : 'preserve'),
-    licenseFile: process.env.REPO_FOUNDRY_LICENSE_FILE || '',
-    npmPublish: process.env.REPO_FOUNDRY_NPM_PUBLISH === 'true',
-    languagesSet: false,
-    featuresSet: false,
-    profileSet: Boolean(process.env.REPO_FOUNDRY_PROFILE),
-    packageManagerSet: Boolean(process.env.REPO_FOUNDRY_PACKAGE_MANAGER),
-    runtimeRepositorySet: Boolean(process.env.REPO_FOUNDRY_RUNTIME_REPOSITORY),
-    runtimeRefSet: Boolean(process.env.REPO_FOUNDRY_RUNTIME_REF),
-    releaseTypeSet: Boolean(process.env.REPO_FOUNDRY_RELEASE_TYPE),
-    licenseSet: Boolean(process.env.REPO_FOUNDRY_LICENSE),
-    licenseFileSet: Boolean(process.env.REPO_FOUNDRY_LICENSE_FILE),
-    npmPublishSet: Boolean(process.env.REPO_FOUNDRY_NPM_PUBLISH),
-    dryRun: false,
-    prune: false,
-    force: false,
-    protection: false,
-    bootstrap: true,
-  }
-  const values = new Map([
-    ['--target', 'target'],
-    ['--source', 'source'],
-    ['--ref', 'ref'],
-    ['--config', 'config'],
-    ['--profile', 'profile'],
-    ['--languages', 'languages'],
-    ['--features', 'features'],
-    ['--package-manager', 'packageManager'],
-    ['--runtime-repository', 'runtimeRepository'],
-    ['--runtime-ref', 'runtimeRef'],
-    ['--release-type', 'releaseType'],
-    ['--license', 'license'],
-    ['--license-file', 'licenseFile'],
-  ])
+  const options = { target: process.cwd(), dryRun: false, force: false }
 
   while (argv.length) {
     const arg = argv.shift()
@@ -100,28 +40,13 @@ function parseArgs(argv) {
       console.log(usage)
       process.exit(0)
     }
-    if (values.has(arg)) {
+    if (arg === '--target') {
       const value = argv.shift()
-      if (!value || value.startsWith('-')) fail(`${arg} requires a value`)
-      options[values.get(arg)] = value
-      if (arg === '--languages') options.languagesSet = true
-      if (arg === '--features') options.featuresSet = true
-      if (arg === '--profile') options.profileSet = true
-      if (arg === '--package-manager') options.packageManagerSet = true
-      if (arg === '--runtime-repository') options.runtimeRepositorySet = true
-      if (arg === '--runtime-ref') options.runtimeRefSet = true
-      if (arg === '--release-type') options.releaseTypeSet = true
-      if (arg === '--license') options.licenseSet = true
-      if (arg === '--license-file') options.licenseFileSet = true
-      continue
-    }
-    if (arg === '--dry-run') options.dryRun = true
+      if (!value || value.startsWith('-')) fail('--target requires a path')
+      options.target = value
+    } else if (arg === '--dry-run') options.dryRun = true
     else if (arg === '--force') options.force = true
-    else if (arg === '--prune') options.prune = true
-    else if (arg === '--protection') options.protection = true
-    else if (arg === '--no-bootstrap') options.bootstrap = false
-    else if (arg === '--npm-publish') { options.npmPublish = true; options.npmPublishSet = true }
-    else fail(`unknown option: ${arg}`)
+    else fail(`unknown option: ${arg}; run --help for the supported options`)
   }
 
   return { command, options }
@@ -142,51 +67,20 @@ function run(script, args, target) {
 function main() {
   const { command, options } = parseArgs(process.argv.slice(2))
   const target = resolve(options.target)
-  const common = ['--source', options.source, '--ref', options.ref]
-  if (options.config) common.push('--config', options.config)
-  if (options.profileSet) common.push('--profile', options.profile)
-  if (options.languagesSet) common.push('--languages', options.languages)
-  if (options.featuresSet) common.push('--features', options.features)
-  if (options.packageManagerSet) common.push('--package-manager', options.packageManager)
-  if (options.runtimeRepositorySet) common.push('--runtime-repository', options.runtimeRepository)
-  if (options.runtimeRefSet) common.push('--runtime-ref', options.runtimeRef)
-  if (options.releaseTypeSet) common.push('--release-type', options.releaseType)
-  if (options.licenseSet) common.push('--license', options.license)
-  if (options.licenseFileSet && options.licenseFile) common.push('--license-file', options.licenseFile)
-  if (options.prune) common.push('--prune')
-  if (options.force) common.push('--force')
+  const common = ['--source', packageRoot, '--ref', 'main']
   if (options.dryRun) common.push('--check')
   else common.push('--apply')
+  if (options.force) common.push('--force')
 
   if (command === 'init') {
-    const initArgs = [
-      '--source', options.source,
-      '--ref', options.ref,
-    ]
-    if (options.profileSet) initArgs.push('--profile', options.profile)
-    if (options.languagesSet) initArgs.push('--languages', options.languages)
-    if (options.featuresSet) initArgs.push('--features', options.features)
-    if (options.packageManagerSet) initArgs.push('--package-manager', options.packageManager)
-    if (options.releaseTypeSet) initArgs.push('--release-type', options.releaseType)
-    if (options.licenseSet) initArgs.push('--license', options.license)
-    if (options.config) initArgs.push('--config', options.config)
-    if (options.runtimeRepositorySet) initArgs.push('--runtime-repository', options.runtimeRepository)
-    if (options.runtimeRefSet) initArgs.push('--runtime-ref', options.runtimeRef)
-    if (options.licenseFileSet && options.licenseFile) initArgs.push('--license-file', options.licenseFile)
-    if (options.protection) initArgs.push('--protection')
+    const initArgs = ['--source', packageRoot, '--ref', 'main']
     if (options.dryRun) initArgs.push('--dry-run')
-    if (options.prune) initArgs.push('--prune')
     if (options.force) initArgs.push('--force')
-    if (options.npmPublishSet && options.npmPublish) initArgs.push('--npm-publish')
-    if (!options.bootstrap) initArgs.push('--no-bootstrap')
     run('init-repo.sh', initArgs, target)
-  } else if (command === 'sync') {
-    run('sync-template.sh', common, target)
-  } else if (command === 'doctor') {
-    run('doctor.sh', [], target)
-  } else {
-    fail(`unknown command: ${command}`)
   }
+  else if (command === 'sync') run('sync-template.sh', common, target)
+  else if (command === 'doctor') run('doctor.sh', [], target)
+  else fail(`unknown command: ${command}`)
 }
 
 main()