code-auditor-mcp 5.0.2 → 5.2.0

package/dist/config/defaults.js

@@ -24,22 +24,23 @@ export function getDefaultConfig() {
             '**/*.test.{ts,tsx,js,jsx}',
             '**/*.spec.{ts,tsx,js,jsx}'
         ],
-        // Note: no `outputFormats`/`outputDirectory` default. Reports are written
-        // only to an explicit CLI `--output` path (or stdout); a config default here
-        // would advertise a key that `print-config` then shows and the loader then
-        // refuses/ignores. See configLoader.ts `output-directory-refused`.
+        // Note: no `outputDirectory` default. Reports are written only to an explicit
+        // CLI `--output` path (or stdout); a config default here would advertise a key
+        // that `print-config` then shows and the loader then refuses. See
+        // configLoader.ts `output-directory-refused`.
         minSeverity: 'high',
-        failOnCritical: false,
-        showProgress: true,
-        thresholds: {
-            maxCritical: 0,
-            maxSevere: 100,
-            minHealthScore: 75
-        },
+        // Spec 11 sweep follow-up — the health-score floor, single-sourced to
+        // DEFAULT_HEALTH_SCORE_THRESHOLD (referenced, not re-declared). The removed
+        // `maxSevere`/`maxCritical`/`maxHigh` siblings are gone for good.
+        thresholds: { minHealthScore: DEFAULT_HEALTH_SCORE_THRESHOLD },
         // Spec 54 R3 — severity is urgency, not permission. There is no
         // `severityOverrides` and no `gateSeverities`: every rule is assigned on the
         // urgency axis (critical/severe/high) and every finding blocks. Per-rule
         // severity tuning disappeared with the old vocabulary.
+        // Spec 13 R1 — churn lookback window. The single default lives in
+        // DEFAULT_CHURN_CONFIG above; referencing it here (not re-declaring) is what
+        // keeps `loadConfig` and `print-config` honest about the effective value.
+        churn: DEFAULT_CHURN_CONFIG,
         // Spec 50 R5 — daemon lifecycle. Never auto-start (a background process the
         // user did not ask for); idle-exit after 5 minutes so it does not linger.
         daemon: {
@@ -91,31 +92,110 @@ export function getProjectTypeDefaults(projectType) {
 export function getEnvironmentDefaults(env) {
     switch (env) {
         case 'ci':
-            return {
-                failOnCritical: true,
-                showProgress: false
-            };
+            return {};
         case 'development':
             return {
-                showProgress: true,
                 minSeverity: 'high'
             };
         case 'production':
             return {
-                minSeverity: 'severe',
-                failOnCritical: true
+                minSeverity: 'severe'
             };
         default:
             return {};
     }
 }
+/**
+ * The value-drift colour threshold — the single source of truth for the
+ * `styles.colorDeltaE` config key (Spec 70 colour directive, item 2). The phase
+ * rule (`src/phase/rules/styles.ts`) and the legacy analyzer
+ * (`src/analyzers/universal/UniversalStylesAnalyzer.ts`) both read this symbol;
+ * the literal must not be re-declared elsewhere.
+ *
+ * `1.0` is the CIEDE2000 (ΔE00) just-noticeable difference. The CIEDE2000
+ * formula (Sharma, Wu & Dalal 2005, "The CIEDE2000 color-difference formula:
+ * Implementation notes, supplementary test data, and mathematical observations",
+ * Color Research & Application 30(1):21–30, doi:10.1002/col.20070; standardised
+ * as CIE 142-2001 / ISO/CIE 11664-6) is normalised so ΔE00 = 1.0 is the
+ * threshold of human perception: pairs with ΔE00 < 1.0 are perceptually
+ * indistinguishable ("near-identical") — exactly the drift the rule flags. The
+ * metric changed ΔE76 → ΔE00 in Spec 70 colour directive item 4; the prior ΔE76
+ * default of 2.5 was "JND-adjacent" to the ~2.3 ΔE76 JND with no written
+ * citation and does not transfer, because the ΔE00 JND is 1.0, not 2.3.
+ */
+export const DEFAULT_COLOR_DELTA_E = 1.0;
+/**
+ * The validator-package vocabulary — the single source of truth for which npm
+ * packages mark an imported identifier as validator-provenanced. Consumed by
+ * three sites (Spec 21 R4 / R3 cross-domain validator-bypass):
+ *   - `buildProvenanceContext` (`src/analyzers/provenance.ts`) — the
+ *     `validatorProvenanced` map the schema/data-access analyzers and the
+ *     CLI `map` command read;
+ *   - the migrated `cross-domain/no-validator-reachable` rule
+ *     (`src/phase/rules/crossDomain.ts`);
+ *   - the legacy `CrossDomainAnalyzer` (kept for the Spec 68 parity guard).
+ *
+ * This replaced the hand-maintained `VALIDATOR_PACKAGES` `ReadonlySet` that
+ * lived in `provenance.ts` and did the job of the deleted `validatorPackageList`
+ * config key. The list must not be re-declared elsewhere: consumers read the
+ * config key and fall back to this symbol (the `DEFAULT_COLOR_DELTA_E` pattern).
+ */
+export const DEFAULT_VALIDATOR_PACKAGES = [
+    'zod',
+    'joi',
+    'ajv',
+    'valibot',
+    'yup',
+    'superstruct',
+    'arktype',
+    '@sinclair/typebox',
+    'class-validator',
+];
+/**
+ * The git-churn lookback window — the single source of truth for the top-level
+ * `churn` config key (Spec 13 R1). The churn extractor
+ * (`src/churn/churnExtractor.ts`) reads `churnWindowMonths` from here instead of
+ * hardcoding `12`; the two extraction call sites (`deepSync` in
+ * `src/codeIndexDB.ts` and the CLI `hotspots` command in `src/cli.ts`) read the
+ * configured `churn` key and fall back to this symbol (the `DEFAULT_COLOR_DELTA_E`
+ * pattern). The literal must not be re-declared elsewhere.
+ *
+ * `12` months is the window `git log --since` scans for file/function churn.
+ */
+export const DEFAULT_CHURN_CONFIG = {
+    churnWindowMonths: 12,
+};
+/**
+ * The health-score pass/fail floor — the single source of truth for the
+ * `audit.health` (`mcp.ts`) and `audit_health` (`mcp-tools-shared.ts`) MCP
+ * tools' `threshold` parameter default. `calculateHealthScore` returns a 0-100
+ * score; below this floor a codebase reports `needs-attention`. Read by both
+ * tool-definition `default` fields and both handler fallbacks; the literal must
+ * not be re-declared elsewhere (the `DEFAULT_COLOR_DELTA_E` pattern).
+ *
+ * `70` is the cut below which `audit.health` reports `needs-attention`.
+ */
+export const DEFAULT_HEALTH_SCORE_THRESHOLD = 70;
+/**
+ * Resolve the health-score floor for one call. Precedence: the MCP `threshold`
+ * argument, then the configured `thresholds.minHealthScore` (read from
+ * `.codeauditor.json` by `loadMinHealthScore`), then the single default above.
+ * This is the one place the fallback is computed, so both MCP surfaces move
+ * together when the default changes. The `||` (not `??`) mirrors the historical
+ * fallback: a `0` threshold (always-pass) was — and remains — indistinguishable
+ * from "unset".
+ *
+ * @param args the MCP tool arguments carrying an optional `threshold` override
+ * @param configMin the configured `thresholds.minHealthScore` floor (if any)
+ * @returns the resolved floor, never below the single default above
+ */
+export function resolveHealthThreshold(args, configMin) {
+    return args?.threshold || configMin || DEFAULT_HEALTH_SCORE_THRESHOLD;
+}
 /**
  * Default analyzer configurations
  */
 export const DEFAULT_ANALYZER_CONFIGS = {
-    // Spec-17 R5: maxComplexity (old heuristic) deprecated; use maxMethodComplexity
-    // and classAggregateComplexity for true cyclomatic complexity.
-    //
     // AUTHORITATIVE source is DEFAULT_SOLID_CONFIG (UniversalSOLIDAnalyzer.ts) —
     // the pipeline and `--print-config` resolve from there (RUNTIME_DEFAULT_CONFIGS),
     // NOT from this copy. This namespace is exported from the library (`src/index.ts`)
@@ -126,8 +206,6 @@ export const DEFAULT_ANALYZER_CONFIGS = {
         maxMethodsPerClass: 20,
         maxLinesPerMethod: 200,
         maxParametersPerMethod: 6,
-        maxImportsPerFile: 5, // Spec 11 R3 sweep: 20 → 5 (precision-first)
-        maxComplexity: 10, // DEPRECATED — old heuristic
         maxInterfaceMembers: 25,
         // R5.1: Per-method cyclomatic complexity threshold (true McCC)
         maxMethodComplexity: 50,
@@ -165,22 +243,9 @@ export const DEFAULT_ANALYZER_CONFIGS = {
         divergence: {
             divergenceThreshold: 0.05,
             divergenceRuns: 2,
-            minPairSimilarity: 0.5,
         },
     },
     dataAccess: {
-        databasePatterns: {
-            postgres: ['pg', 'postgres', 'postgresql'],
-            mysql: ['mysql', 'mysql2'],
-            mongodb: ['mongodb', 'mongoose']
-        },
-        securityPatterns: {
-            parameterizedQueries: ['?', '$1', ':param'],
-        },
-        performanceThresholds: {
-            maxJoins: 5,
-            warnOnSelectStar: true
-        },
         // Spec 21 R3: shared detection mode — provenance-primary with name-fallback
         detection: {
             mode: 'hybrid',
@@ -230,7 +295,6 @@ export const DEFAULT_ANALYZER_CONFIGS = {
         enableTableUsageTracking: true,
         checkMissingReferences: true,
         checkNamingConventions: true,
-        detectUnusedTables: false,
         validateQueryPatterns: true,
         reportUnresolvedQueries: true,
         maxQueriesPerFunction: 1, // Spec 11 R3 sweep: 5 → 1 (precision-first)
@@ -243,11 +307,6 @@ export const DEFAULT_ANALYZER_CONFIGS = {
         detection: {
             mode: 'hybrid',
         },
-        // Spec 21 R4: validator package list for provenanced validator detection
-        validatorPackageList: [
-            'zod', 'joi', 'ajv', 'valibot', 'yup', 'superstruct', 'arktype',
-            '@sinclair/typebox', 'class-validator',
-        ],
         // Spec 29: Declarative table-source registry — Tier 2 (ORM detection).
         // Adding an ORM becomes a config entry, not code.
         tableSources: [
@@ -258,7 +317,7 @@ export const DEFAULT_ANALYZER_CONFIGS = {
     },
     // Spec 10 R3: style intelligence analyzer defaults
     styles: {
-        colorDeltaE: 2.5,
+        colorDeltaE: DEFAULT_COLOR_DELTA_E,
         scaleProperties: [
             'margin', 'margin-top', 'margin-right', 'margin-bottom', 'margin-left',
             'padding', 'padding-top', 'padding-right', 'padding-bottom', 'padding-left',
@@ -294,6 +353,9 @@ export const DEFAULT_ANALYZER_CONFIGS = {
         },
         validatorBypass: {
             validators: [],
+            // The package vocabulary for provenanced-validator detection (Spec 21 R4).
+            // Overridable via `analyzerConfigs["cross-domain"].validatorBypass.validatorPackageList`.
+            validatorPackageList: DEFAULT_VALIDATOR_PACKAGES,
             modeShare: 0.8,
             minCorpus: 20,
             depth: 3,

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package/dist/constants.d.ts

@@ -9,9 +9,10 @@
  * version of whatever package.json sits next to it on disk (the defect where a
  * pre-3.9.4 binary announced itself as 3.9.9).
  */
-export declare const PACKAGE_VERSION = "5.0.2";
+export declare const PACKAGE_VERSION = "5.2.0";
 export declare const DEFAULT_PORT = 11437;
 export declare const DEFAULT_SERVER_URL = "http://localhost:11437";
 export declare const MCP_SERVER_NAME = "code-index";
+export declare const DEFAULT_RULE_REQUEST_BASE_URL = "https://www.codeauditormcp.com";
 export declare const IS_DEV_MODE: boolean;
 //# sourceMappingURL=constants.d.ts.map

package/dist/constants.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;GAEG;AAIH;;;;;;;GAOG;AACH,eAAO,MAAM,eAAe,UAAU,CAAC;AAKvC,eAAO,MAAM,YAAY,QAAQ,CAAC;AAGlC,eAAO,MAAM,kBAAkB,2BAAqC,CAAC;AAGrE,eAAO,MAAM,eAAe,eAAe,CAAC;AAK5C,eAAO,MAAM,6BAA6B,mCAAmC,CAAC;AAW9E,eAAO,MAAM,WAAW,SAAiC,CAAC"}

package/dist/constants.js

@@ -19,6 +19,10 @@ export const DEFAULT_PORT = 11437;
 export const DEFAULT_SERVER_URL = `http://localhost:${DEFAULT_PORT}`;
 // MCP server name
 export const MCP_SERVER_NAME = 'code-index';
+// Base URL of the docs site's HTTP tool API (`/api/tools/<name>`), used by the
+// `code-audit request-rule` subcommand. A default, not a contract — overridable
+// with `--endpoint`.
+export const DEFAULT_RULE_REQUEST_BASE_URL = 'https://www.codeauditormcp.com';
 // Development mode detection.
 //
 // Opt-in via an explicit `--dev` flag only. It must NOT key off `NODE_ENV` or

package/dist/constants.js.map

@@ -1 +1 @@
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+{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAEjD;;;;;;;GAOG;AACH,MAAM,CAAC,MAAM,eAAe,GAAG,OAAO,CAAC;AAEvC,uCAAuC;AACvC,iEAAiE;AACjE,wGAAwG;AACxG,MAAM,CAAC,MAAM,YAAY,GAAG,KAAK,CAAC;AAElC,qBAAqB;AACrB,MAAM,CAAC,MAAM,kBAAkB,GAAG,oBAAoB,YAAY,EAAE,CAAC;AAErE,kBAAkB;AAClB,MAAM,CAAC,MAAM,eAAe,GAAG,YAAY,CAAC;AAE5C,+EAA+E;AAC/E,gFAAgF;AAChF,qBAAqB;AACrB,MAAM,CAAC,MAAM,6BAA6B,GAAG,gCAAgC,CAAC;AAE9E,8BAA8B;AAC9B,EAAE;AACF,8EAA8E;AAC9E,gFAAgF;AAChF,yEAAyE;AACzE,8EAA8E;AAC9E,gFAAgF;AAChF,sFAAsF;AACtF,4EAA4E;AAC5E,MAAM,CAAC,MAAM,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC"}

package/dist/daemon/main.d.ts

@@ -15,7 +15,6 @@
  *   --foreground                  log state transitions to stderr instead of running silent
  *   --lsp                         also serve the LSP face over stdio
  */
-import '../native-bootstrap.js';
 export interface DaemonRunOptions {
     projectRoot: string;
     configName?: string;

package/dist/daemon/main.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"main.d.ts","sourceRoot":"","sources":["../../src/daemon/main.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;;;;GAeG;AAEH,OAAO,wBAAwB,CAAC;AAgBhC,MAAM,WAAW,gBAAgB;IAC/B,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,8EAA8E;IAC9E,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,6EAA6E;IAC7E,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED;;;;;;GAMG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CA2ElF"}
+{"version":3,"file":"main.d.ts","sourceRoot":"","sources":["../../src/daemon/main.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;;;;GAeG;AA2BH,MAAM,WAAW,gBAAgB;IAC/B,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,8EAA8E;IAC9E,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,6EAA6E;IAC7E,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED;;;;;;GAMG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CA0ElF"}

package/dist/daemon/main.js

@@ -15,7 +15,6 @@
  *   --foreground                  log state transitions to stderr instead of running silent
  *   --lsp                         also serve the LSP face over stdio
  */
-import '../native-bootstrap.js';
 import path from 'node:path';
 import { fileURLToPath } from 'node:url';
 import { realpathSync } from 'node:fs';
@@ -28,6 +27,16 @@ import { findConfigFileUp, loadConfig } from '../config/configLoader.js';
 import { PACKAGE_VERSION } from '../constants.js';
 import { parseArgs, USAGE } from './args.js';
 const DEFAULT_IDLE_TIMEOUT_MS = 5 * 60 * 1000;
+/**
+ * The `CODE_AUDITOR_DAEMON_IDLE_MS` override, or `undefined` when unset/invalid.
+ * Single read site — the idle-timeout resolution consumes this; a value that is
+ * not a positive finite number is treated as "not set" and falls through to the
+ * config/default chain.
+ */
+function daemonIdleMsFromEnv() {
+    const envMs = Number(process.env.CODE_AUDITOR_DAEMON_IDLE_MS);
+    return Number.isFinite(envMs) && envMs > 0 ? envMs : undefined;
+}
 /**
  * Run the daemon in-process, blocking until a signal / idle timeout / socket
  * `shutdown` request. Shared by the detached entry (`main.ts`'s own `main`) and
@@ -55,9 +64,7 @@ export async function runDaemonForeground(options) {
     // Idle timeout resolution: CLI arg → env → config → default.
     let idleTimeoutMs = options.idleTimeoutMs;
     if (idleTimeoutMs === undefined || !Number.isFinite(idleTimeoutMs) || idleTimeoutMs <= 0) {
-        const envMs = Number(process.env.CODE_AUDITOR_DAEMON_IDLE_MS);
-        if (Number.isFinite(envMs) && envMs > 0)
-            idleTimeoutMs = envMs;
+        idleTimeoutMs = daemonIdleMsFromEnv();
     }
     if (idleTimeoutMs === undefined || !Number.isFinite(idleTimeoutMs) || idleTimeoutMs <= 0) {
         try {

package/dist/daemon/main.js.map

@@ -1 +1 @@
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+{"version":3,"file":"main.js","sourceRoot":"","sources":["../../src/daemon/main.ts"],"names":[],"mappings":";AAEA;;;;;;;;;;;;;;;GAeG;AAEH,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACvC,OAAO,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AACvC,OAAO,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAC/C,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAC;AACzC,OAAO,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AACtD,OAAO,EAAE,uBAAuB,EAAE,MAAM,iBAAiB,CAAC;AAC1D,OAAO,EAAE,gBAAgB,EAAE,UAAU,EAAE,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC;AAClD,OAAO,EAAE,SAAS,EAAE,KAAK,EAAE,MAAM,WAAW,CAAC;AAE7C,MAAM,uBAAuB,GAAG,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC;AAE9C;;;;;GAKG;AACH,SAAS,mBAAmB;IAC1B,MAAM,KAAK,GAAG,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,2BAA2B,CAAC,CAAC;IAC9D,OAAO,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAC;AACjE,CAAC;AAYD;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,OAAyB;IACjE,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;IACtD,MAAM,UAAU,GAAG,uBAAuB,CAAC,WAAW,CAAC,CAAC;IACxD,MAAM,UAAU,GAAG,CAAC,CAAC,OAAO,CAAC,UAAU,CAAC;IACxC,MAAM,GAAG,GAAG,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC;IAE1B,8EAA8E;IAC9E,+EAA+E;IAC/E,wEAAwE;IACxE,4EAA4E;IAC5E,6EAA6E;IAC7E,qDAAqD;IACrD,MAAM,WAAW,GAAG,MAAM,iBAAiB,CAAC,UAAU,CAAC,CAAC;IACxD,IAAI,WAAW,IAAI,CAAC,GAAG,EAAE,CAAC;QACxB,IAAI,UAAU;YAAE,OAAO,CAAC,KAAK,CAAC,iEAAiE,CAAC,CAAC;QACjG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,6DAA6D;IAC7D,IAAI,aAAa,GAAG,OAAO,CAAC,aAAa,CAAC;IAC1C,IAAI,aAAa,KAAK,SAAS,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,CAAC,IAAI,aAAa,IAAI,CAAC,EAAE,CAAC;QACzF,aAAa,GAAG,mBAAmB,EAAE,CAAC;IACxC,CAAC;IACD,IAAI,aAAa,KAAK,SAAS,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,CAAC,IAAI,aAAa,IAAI,CAAC,EAAE,CAAC;QACzF,IAAI,CAAC;YACH,MAAM,UAAU,GAAG,MAAM,gBAAgB,CAAC,WAAW,CAAC,CAAC;YACvD,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,UAAU,EAAE,UAAU,IAAI,SAAS,EAAE,WAAW,EAAE,CAAC,CAAC;YAC1F,aAAa,GAAG,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;QAC/C,CAAC;QAAC,MAAM,CAAC;YACP,mDAAmD;QACrD,CAAC;IACH,CAAC;IACD,IAAI,aAAa,KAAK,SAAS,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,CAAC,IAAI,aAAa,IAAI,CAAC,EAAE,CAAC;QACzF,aAAa,GAAG,uBAAuB,CAAC;IAC1C,CAAC;IAED,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC;QAC1B,WAAW;QACX,UAAU,EAAE,OAAO,CAAC,UAAU;QAC9B,aAAa;QACb,OAAO,EAAE,CAAC,KAAK,EAAE,EAAE;YACjB,IAAI,UAAU;gBAAE,OAAO,CAAC,KAAK,CAAC,yBAAyB,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;QACzE,CAAC;KACF,CAAC,CAAC;IACH,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,CAAC,CAAC;IAClD,MAAM,OAAO,GAAG,GAAG,CAAC,CAAC,CAAC,IAAI,OAAO,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAE/D,yEAAyE;IACzE,uEAAuE;IACvE,8EAA8E;IAC9E,SAAS;IACT,IAAI,QAAQ,GAAG,KAAK,CAAC;IACrB,MAAM,MAAM,GAAG,KAAK,IAAmB,EAAE;QACvC,IAAI,QAAQ;YAAE,OAAO;QACrB,QAAQ,GAAG,IAAI,CAAC;QAChB,IAAI,CAAC,CAAC,WAAW,IAAI,GAAG,CAAC;YAAE,MAAM,IAAI,CAAC,IAAI,EAAE,CAAC;QAC7C,IAAI,OAAO;YAAE,OAAO,CAAC,IAAI,EAAE,CAAC;QAC5B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC,CAAC;IACF,IAAI,CAAC,EAAE,CAAC,UAAU,EAAE,GAAG,EAAE,CAAC,KAAK,MAAM,EAAE,CAAC,CAAC;IACzC,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,GAAG,EAAE,CAAC,KAAK,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC;IACzD,OAAO,CAAC,EAAE,CAAC,SAAS,EAAE,GAAG,EAAE,CAAC,KAAK,IAAI,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,CAAC;IAE3D,6EAA6E;IAC7E,+EAA+E;IAC/E,uEAAuE;IACvE,IAAI,CAAC,CAAC,WAAW,IAAI,GAAG,CAAC,EAAE,CAAC;QAC1B,MAAM,IAAI,CAAC,KAAK,EAAE,CAAC;QACnB,IAAI,UAAU;YAAE,OAAO,CAAC,KAAK,CAAC,iCAAiC,WAAW,OAAO,UAAU,EAAE,CAAC,CAAC;IACjG,CAAC;IACD,6EAA6E;IAC7E,0EAA0E;IAC1E,IAAI,OAAO;QAAE,OAAO,CAAC,KAAK,EAAE,CAAC;IAC7B,MAAM,IAAI,CAAC,KAAK,EAAE,CAAC;AACrB,CAAC;AAED,KAAK,UAAU,IAAI;IACjB,MAAM,IAAI,GAAG,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC9C,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QAC5B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IACD,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;QACjB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,eAAe,IAAI,CAAC,CAAC;QAC7C,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IACD,MAAM,mBAAmB,CAAC;QACxB,WAAW,EAAE,IAAI,CAAC,WAAW;QAC7B,UAAU,EAAE,IAAI,CAAC,UAAU;QAC3B,aAAa,EAAE,IAAI,CAAC,aAAa;QACjC,UAAU,EAAE,IAAI,CAAC,UAAU;QAC3B,GAAG,EAAE,IAAI,CAAC,GAAG;KACd,CAAC,CAAC;AACL,CAAC;AAED,8EAA8E;AAC9E,gFAAgF;AAChF,4EAA4E;AAC5E,+EAA+E;AAC/E,iEAAiE;AACjE,EAAE;AACF,4EAA4E;AAC5E,oEAAoE;AACpE,4EAA4E;AAC5E,6EAA6E;AAC7E,6EAA6E;AAC7E,4CAA4C;AAC5C,SAAS,YAAY;IACnB,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;QAAE,OAAO,KAAK,CAAC;IACnC,IAAI,CAAC;QACH,OAAO,YAAY,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,KAAK,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;IACxF,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED,IAAI,YAAY,EAAE,EAAE,CAAC;IACnB,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,GAAG,EAAE,EAAE;QACnB,OAAO,CAAC,KAAK,CAAC,8BAA8B,EAAE,GAAG,CAAC,CAAC;QACnD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC,CAAC,CAAC;AACL,CAAC"}

package/dist/dataPaths.d.ts

@@ -1,3 +1,10 @@
+/**
+ * The `CODE_AUDITOR_DATA_DIR` override, trimmed and normalized to `undefined`
+ * when unset/blank. Single read site — the path resolver and the two display
+ * surfaces (MCP startup + auto-index log) all consume this, so they can never
+ * disagree on whether a data dir was configured.
+ */
+export declare function dataDirEnv(): string | undefined;
 /**
  * Default on-disk path for the code index database.
  *
@@ -56,17 +63,6 @@ export declare function resolveDaemonLogPath(projectRoot: string): string;
  * `options.output || process.cwd()` default, wearing a different hat.
  */
 export declare function resolveMcpDevLogPath(): string;
-/**
- * Cache directory for a rebuilt Go analyzer binary. A rebuild — needed when the
- * running platform has no shipped prebuilt binary — lands here, never in
- * `dist/languages/go`, so the shipped tree stays read-only (npm/pnpm store, CI
- * caches, container layers) and the shipped artifact is never overwritten. The
- * binary filename is platform-qualified (`analyzer-<goos>-<goarch>`), so a single
- * flat dir holds every platform without collision; the OS cache root is
- * gitignored by convention and wiped by clean installs, which is exactly the
- * lifecycle a derived binary should have.
- */
-export declare function resolveGoAnalyzerCacheDir(): string;
 /**
  * OS-specific per-user config root for persistent, user-scoped state (the anonymous
  * install ID and the telemetry opt-in). Deliberately NOT the cache root above: the
@@ -77,6 +73,16 @@ export declare function resolveGoAnalyzerCacheDir(): string;
  * @returns The OS-specific per-user config directory for persistent user-scoped state.
  */
 export declare function getUserConfigRoot(): string;
+/**
+ * Discover the project root for a starting directory by walking up until a
+ * marker (`PROJECT_ROOT_MARKERS`) is found. Returns the resolved start directory
+ * when no marker is found — the caller then hashes whatever it was given, which
+ * is the correct fallback for a bare directory with no project identity.
+ *
+ * @param startDir - Directory to begin the upward search from.
+ * @returns The nearest ancestor carrying a project marker, or the resolved start.
+ */
+export declare function discoverProjectRoot(startDir: string): string;
 /** Stable per-project identifier used to scope cache/data paths. */
 export declare function projectHash(root: string): string;
 //# sourceMappingURL=dataPaths.d.ts.map

package/dist/dataPaths.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dataPaths.d.ts","sourceRoot":"","sources":["../src/dataPaths.ts"],"names":[],"mappings":"AAKA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,yBAAyB,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,MAAM,CAWtE;AAED,2FAA2F;AAC3F,wBAAgB,uBAAuB,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,MAAM,CAEpE;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,uBAAuB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAGnE;AAED;;;;;;GAMG;AACH,wBAAgB,oBAAoB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAGhE;AAED;;;;;;;;GAQG;AACH,wBAAgB,oBAAoB,IAAI,MAAM,CAE7C;AAED;;;;;;;;;GASG;AACH,wBAAgB,yBAAyB,IAAI,MAAM,CAElD;AAkBD;;;;;;;;GAQG;AACH,wBAAgB,iBAAiB,IAAI,MAAM,CAa1C;AAmBD,oEAAoE;AACpE,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAEhD"}
+{"version":3,"file":"dataPaths.d.ts","sourceRoot":"","sources":["../src/dataPaths.ts"],"names":[],"mappings":"AAKA;;;;;GAKG;AACH,wBAAgB,UAAU,IAAI,MAAM,GAAG,SAAS,CAG/C;AAED;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,yBAAyB,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,MAAM,CActE;AAED,2FAA2F;AAC3F,wBAAgB,uBAAuB,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,MAAM,CAEpE;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,uBAAuB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAGnE;AAED;;;;;;GAMG;AACH,wBAAgB,oBAAoB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAGhE;AAED;;;;;;;;GAQG;AACH,wBAAgB,oBAAoB,IAAI,MAAM,CAE7C;AAkBD;;;;;;;;GAQG;AACH,wBAAgB,iBAAiB,IAAI,MAAM,CAa1C;AA8BD;;;;;;;;GAQG;AACH,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAe5D;AAED,oEAAoE;AACpE,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAEhD"}

package/dist/dataPaths.js

@@ -2,6 +2,16 @@ import path from 'node:path';
 import fs from 'node:fs';
 import os from 'node:os';
 import { createHash } from 'node:crypto';
+/**
+ * The `CODE_AUDITOR_DATA_DIR` override, trimmed and normalized to `undefined`
+ * when unset/blank. Single read site — the path resolver and the two display
+ * surfaces (MCP startup + auto-index log) all consume this, so they can never
+ * disagree on whether a data dir was configured.
+ */
+export function dataDirEnv() {
+    const raw = process.env.CODE_AUDITOR_DATA_DIR?.trim();
+    return raw ? raw : undefined;
+}
 /**
  * Default on-disk path for the code index database.
  *
@@ -27,14 +37,17 @@ import { createHash } from 'node:crypto';
  * @returns The on-disk path to the index database.
  */
 export function resolvePersistedIndexPath(projectRoot) {
-    const raw = process.env.CODE_AUDITOR_DATA_DIR?.trim();
+    const raw = dataDirEnv();
     if (raw) {
         if (projectRoot) {
-            return path.join(path.resolve(raw), 'projects', projectHash(projectRoot), 'index.db');
+            return path.join(path.resolve(raw), 'projects', projectHash(discoverProjectRoot(projectRoot)), 'index.db');
         }
         return path.join(path.resolve(raw), 'index.db');
     }
-    const root = path.resolve(projectRoot || process.cwd());
+    // Key on the project's own identity (its git root / package.json dir), never
+    // on where the process happened to start. Two invocations started from
+    // different directories inside one project must land on the same DB.
+    const root = discoverProjectRoot(projectRoot || process.cwd());
     return path.join(getFallbackCacheRoot(), 'projects', projectHash(root), 'index.db');
 }
 /** Directory that contains `index.db`. Optionally accepts projectRoot for scoped paths. */
@@ -80,19 +93,6 @@ export function resolveDaemonLogPath(projectRoot) {
 export function resolveMcpDevLogPath() {
     return path.join(getFallbackCacheRoot(), 'logs', 'mcp-server.log');
 }
-/**
- * Cache directory for a rebuilt Go analyzer binary. A rebuild — needed when the
- * running platform has no shipped prebuilt binary — lands here, never in
- * `dist/languages/go`, so the shipped tree stays read-only (npm/pnpm store, CI
- * caches, container layers) and the shipped artifact is never overwritten. The
- * binary filename is platform-qualified (`analyzer-<goos>-<goarch>`), so a single
- * flat dir holds every platform without collision; the OS cache root is
- * gitignored by convention and wiped by clean installs, which is exactly the
- * lifecycle a derived binary should have.
- */
-export function resolveGoAnalyzerCacheDir() {
-    return path.join(getFallbackCacheRoot(), 'go-analyzer');
-}
 /** OS-specific cache root (gitignored by convention, wiped by clean installs). */
 function getFallbackCacheRoot() {
     const xdg = process.env.XDG_CACHE_HOME?.trim();
@@ -148,6 +148,41 @@ function resolveRealPath(p) {
         return path.resolve(p);
     }
 }
+/**
+ * Project-identity markers: a directory that contains any of these is treated
+ * as a project root. Walked upward from the process start (or the `-p` path) so
+ * the cache key reflects *what* is being audited, not *where* the process was
+ * started — two invocations from different directories inside one project must
+ * land on the same database.
+ *
+ * `.git` may be a file (git worktree / submodule) or a directory.
+ */
+const PROJECT_ROOT_MARKERS = ['.git', 'package.json', 'go.mod'];
+/**
+ * Discover the project root for a starting directory by walking up until a
+ * marker (`PROJECT_ROOT_MARKERS`) is found. Returns the resolved start directory
+ * when no marker is found — the caller then hashes whatever it was given, which
+ * is the correct fallback for a bare directory with no project identity.
+ *
+ * @param startDir - Directory to begin the upward search from.
+ * @returns The nearest ancestor carrying a project marker, or the resolved start.
+ */
+export function discoverProjectRoot(startDir) {
+    let current = resolveRealPath(startDir);
+    for (;;) {
+        for (const marker of PROJECT_ROOT_MARKERS) {
+            if (fs.existsSync(path.join(current, marker))) {
+                return current;
+            }
+        }
+        const parent = path.dirname(current);
+        if (parent === current) {
+            // Reached the filesystem root with no marker — fall back to the start dir.
+            return resolveRealPath(startDir);
+        }
+        current = parent;
+    }
+}
 /** Stable per-project identifier used to scope cache/data paths. */
 export function projectHash(root) {
     return createHash('sha256').update(resolveRealPath(root)).digest('hex').substring(0, 16);

package/dist/dataPaths.js.map

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package/dist/hookLog.d.ts

@@ -0,0 +1,54 @@
+/**
+ * Hook-log reader — the read half of the hook's write-only diagnostic log.
+ *
+ * The PostToolUse/SessionStart hooks (`plugin/scripts/hook-*.sh`) and the
+ * bootstrap guard in `plugin/hooks/hooks.json` write status records to the hook
+ * log that `hook_log_dir()`/`hook_log_file()` in hook-common.sh compute. Until
+ * this module existed, nothing read that log — a hook that stopped enqueueing
+ * (e.g. `CLAUDE_PLUGIN_ROOT` unset) was invisible to the explicit audit, the
+ * exact silent-disable the 4.1.0 guard was removed to escape. This module is
+ * the single shared reader both the CLI and MCP audit entry points call, so a
+ * live "hook not running" condition surfaces as a top-level notice rather than
+ * vanishing into a write-only log.
+ *
+ * The path here is deliberately NOT `getFallbackCacheRoot()`: that resolves to
+ * `~/Library/Caches/code-auditor` on macOS, while the bash hooks always use the
+ * Linux-style `${XDG_CACHE_HOME:-$HOME/.cache}` convention regardless of
+ * platform. The writer and reader must agree, so the tail and file name are
+ * single-sourced: `HOOK_LOG_DIR_TAIL`/`HOOK_LOG_FILE` are imported from
+ * `hookLogPath.generated.ts`, which `scripts/write-hook-log-path.mjs` generates
+ * from the same source as `plugin/scripts/hook-log-path.sh` (the file the bash
+ * writer sources) — the two languages can never drift.
+ *
+ * Contract (fail-open): an absent, unreadable, or malformed log yields no
+ * notice and never throws — the reader must not change the audit exit code.
+ */
+/** The hook-log directory, mirroring hook-common.sh's `hook_log_dir()`. */
+export declare function resolveHookLogDir(): string;
+/** The hook-log file path, mirroring hook-common.sh's `hook_log_file()`. */
+export declare function resolveHookLogPath(): string;
+/** A live "hook not running" condition, when one is unresolved. */
+export interface HookNotice {
+    /** The newest unresolved condition record's message, verbatim. */
+    condition: string;
+    /** The full user-facing notice: the condition plus the stale-findings
+     *  consequence, so the CLI and MCP share one wording. */
+    message: string;
+}
+/**
+ * Read the hook log and report a live "hook not running" condition, if any.
+ *
+ * "Live" is decided by record order, not a time window: a condition is live
+ * when the newest `HOOK NOT RUNNING` record is newer than the newest `HOOK RAN`
+ * record — or no `HOOK RAN` record exists at all. A successful hook run since
+ * the condition resolves it.
+ *
+ * Fail-open: an absent, unreadable, or malformed log yields `null` (no notice)
+ * and never throws.
+ *
+ * @returns The live "hook not running" notice, or `null` when the log is
+ *   absent/unreadable/malformed or the latest `HOOK RAN` record resolves the
+ *   newest condition.
+ */
+export declare function readHookNotice(): HookNotice | null;
+//# sourceMappingURL=hookLog.d.ts.map

package/dist/hookLog.d.ts.map

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