code-auditor-mcp 3.9.11 → 4.0.0

package/.claude-plugin/marketplace.json

@@ -10,7 +10,7 @@
       "name": "code-auditor",
       "source": "./plugin",
       "description": "Diff-scoped code quality auditing on every edit. Indexes your codebase, enforces invariants, and feeds violations back to the agent so fixes happen inline.",
-      "version": "3.9.11",
+      "version": "4.0.0",
       "author": {
         "name": "Ben Hammond"
       },

package/CHANGELOG.md

@@ -2,6 +2,206 @@
 
 All notable changes to the Code Auditor MCP project.
 
+## [4.0.0] — 2026-09-18
+
+### Severity model recalibrated: `high` → `advisory` (Spec 54)
+
+The severity scale is three tiers — `critical`, `severe`, `advisory` — where
+`advisory` replaces `high`. `advisory` is not the bottom of a defect ladder but a
+separate class: the code is correct but does not match a convention (off-scale
+spacing, missing JSDoc, dot-import style). Rules were re-tiered across the TypeScript
+and Go analyzers so the tier now means something: `critical` is already-wrong-in-
+production (SQL injection, a tenant-isolation breach, a dropped table), `severe` is a
+real defect that has not bitten yet (an N+1 query, dead code, missing alt text),
+`advisory` is convention.
+
+**Breaking:** a consumer reading `severity: "high"` must now read `"advisory"`, and
+`--fail-on high` errors with a message naming `advisory` rather than being silently
+accepted.
+
+### Go analyzers unified under a single `go` namespace
+
+The Go subprocess reported four analyzer names (`imports`, `errors`, `goroutines`,
+`channels`) that exposed its internal structure. It now reports one `go` analyzer,
+matching how the TypeScript side keeps `solid` as a single name. The five Go rules —
+`channel-deadlock` (critical), `error-handling` and `concurrency` (severe),
+`import-organization` and `import-style` (advisory) — are registered in the rule
+registry with their re-tiered severities.
+
+**Breaking:** consumers grouping Go findings by `analyzer` must now group by `go`.
+
+### Go analyzer no longer ships a single darwin/amd64 binary to every platform
+
+The Go subprocess shipped as one prebuilt Mach-O (`darwin/amd64`). On any other
+platform/architecture that binary could not exec, and the failure collapsed into an
+empty-violation `go_analysis_skipped` — Go analysis silently did nothing everywhere but
+darwin/amd64. The runtime now inspects the binary's header and gates on it at the point
+of resolution, not just at build time, so a foreign or wrong-arch binary is caught on
+every path that reaches for it. A missing or mismatched binary triggers a rebuild from
+the shipped source, forcing `GOOS`/`GOARCH` to the host platform (an emulated amd64
+toolchain on darwin/arm64 still emits arm64). When no Go toolchain is present to rebuild,
+the run reports a named diagnostic — `go-analyzer-wrong-arch` for a foreign binary,
+`go-toolchain-missing` for an absent one, `go-analyzer-build-failed` for a build error —
+instead of an empty result.
+
+**Behavior change for non-darwin/amd64 consumers:** the first run now rebuilds the Go
+analyzer from the shipped source, which requires `go` on `PATH`. Before, those platforms
+got a silent empty result; now they get a working analyzer, or — if no Go toolchain is
+installed — a named diagnostic saying exactly what's missing. This is a new runtime
+prerequisite on that first run, not a silent change.
+
+### `next-file` cache can no longer silently drop findings
+
+Two bugs in the same class as the `end_line` NULL/one-path split-brain:
+
+- **Stale snapshot after the severity rename.** A `next-file` snapshot seeded before
+  the rename cached `high` severities that the live rank no longer recognized, so they
+  sorted to `undefined` and vanished from the advisory bucket. The snapshot is now
+  versioned (`SNAPSHOT_VERSION = 2`); a v1 snapshot is discarded and re-seeded rather
+  than reused.
+- **Unknown severity fails loudly.** `SEVERITY_RANK[v.severity]` returning `undefined`
+  was silent. Ranking now goes through `severityRank()`, which throws on an unknown
+  severity rather than dropping the finding — a finding that cannot be ranked is a bug,
+  not something to drop.
+
+### `loop-query` no longer double-fires on template-literal SQL
+
+A query site whose SQL argument was a template literal (`db.prepare(\`…\`)`) emitted
+two `loop-query` findings — one for the call node and one for the literal. The literal
+is now collapsed into the call, so one query site is one finding. A loop of seven
+`db.prepare(\`…\`)` calls reports seven findings, not fourteen.
+
+### React findings anchor to the correct line; comment-as-markup is honored
+
+React analyzer findings anchor to the component's own line rather than line 1, and JSX
+comment nodes are no longer misread as markup.
+
+### Stale-schema `unknown-table` no longer emits false criticals
+
+`unknown-table` findings from a stale schema catalog were flagged `critical`; they are
+reworded/re-tiered so a schema that has not been re-synced is not reported as a
+production-breaking defect.
+
+### Discovery respects `.gitignore` (Spec 58)
+
+`discoverFiles` now consults `git ls-files --others --ignored --exclude-standard` and
+prunes any path the repo has disowned. Previously a gitignored build cache or corpus
+directory (e.g. `corpus-expansion/`) was walked like source — 28,050 files in one case —
+inflating discovery time and analyzing files the repo explicitly disowned. Whole-ignored
+directories collapse to a single entry, so the check adds a fixed ~46 ms rather than a
+per-file cost.
+
+### Index reconciliation compares against discovery, not the filesystem
+
+The functions index previously dropped rows only when a file vanished from disk
+(`fs.access`). A file that is gitignored — still present, but no longer source — survived
+reconciliation and left stale DRY matches and a bloated scoped-run index. `bulkCleanup`
+and `deepSync` now reconcile against the discovery set, so a gitignored file is an orphan
+too, and the daemon seed passes its project root so a seeded store self-heals on the next
+full run. For an existing cache this is a one-time upgrade artifact: the first seed after
+upgrading drops the stale rows.
+
+### Style-index sync no longer shells out to `git ls-files` when there is no style work
+
+The Tailwind config loader runs `git ls-files` to find `@theme` CSS files. It ran on every
+audit — including a diff-scoped `.ts` change where the styles sync does `changed:0` and never
+consumes the tokens. It now loads lazily, only when a file actually reaches token extraction,
+so a scoped source-file change no longer pays that subprocess.
+
+## [3.11.0] — 2026-09-18
+
+### Import specifiers are classified at emission (Spec 60.1)
+
+Every static import specifier the function-index visitor already emits is now
+classified into exactly one of five classes — `package` (not `.`/`/`-prefixed and
+no tsconfig `paths`/`@/` alias), `unresolved-alias` (matches a tsconfig `paths`
+pattern or begins with `@/`), `internal-resolved` (`.`/`/`-prefixed and
+normalization finds one existing file), `internal-broken` (`.`/`/`-prefixed and no
+existing file), or `unresolved-virtual` (matches a configured virtual module such as
+Blitz's `.blitz`) — and persisted to the `import_specifiers` table. Classification
+happens at emission in the stage-2 visitor. The classifier (`classifyImportSpecifier`)
+is a pure function that reuses `normalizePath` (now exported from `importGraph.ts`)
+and does not use `resolveDependency` — whose basename/path-segment fallback this
+spec replaces.
+
+Correction 1 fixes the corpus file set: classification answers "does this import
+resolve to a real file" independent of what the audit chooses to analyze, so it
+re-walks discovery with `ALL_EXTENSIONS` and no include/exclude narrowing rather
+than reusing the audit's narrowed `files` list — which had dropped `.json`/`.sql`
+and misclassified a real `./invariant-rules.schema.json` import as `internal-broken`.
+
+Known limits (reported, not fixed here): `export {x} from './y'` re-exports and bare
+`import './side-effect'` statements are not captured by `buildImportInfo`, so they
+produce no `import_specifiers` row.
+
+### The pinned fallback installs and invokes by absolute path, not `npx`
+
+The last-resort fallback was `npx -p code-auditor-mcp@<version> code-audit`. That form
+resolves the bin *name* against a PATH the hook does not control, so a same-named
+binary earlier in PATH — a global `code-audit`, or a volta shim — shadows the pin,
+and the "fallback" silently routes back to the stale global it was meant to replace.
+Loud (version-checked), but broken, and the user's only recourse was the manual
+update the pin existed to avoid. `resolve_code_audit` now skips `npx` for execution
+entirely: `resolve_pinned_bin` installs the exact version to a deterministic dir
+(`${XDG_CACHE_HOME:-~/.cache}/code-auditor/cli/<version>`) and emits the absolute
+`node_modules/.bin/code-audit` path, so PATH is never consulted for the bin name.
+`--ignore-scripts` is safe here (the CLI uses `node:sqlite` and ships prebuilt
+binaries) and faster. The `SessionStart` warm and `code-audit install`'s warm now
+install to the same dir, and both short-circuit when it is already populated, so a
+warm session pays no registry re-check. If the install fails (offline, registry
+error), the fallback emits a last-ditch `npx` command that `assert_compatible`
+rejects loudly — never an empty command, never a silent mis-pin.
+
+### The bundled CLI is version-checked like every other candidate
+
+`resolve_code_audit` trusted the bundled sibling (`CLAUDE_PLUGIN_ROOT/../dist/cli.js`)
+on presence alone, on the assumption that `dist/` and `plugin/` always ship together.
+That holds for npm installs and not for a marketplace checkout, where `dist/` is a
+gitignored local build that can be stale. A stale bundled sibling is now warned about
+and skipped like any other candidate, and `assert_compatible` no longer short-circuits
+it — no path is trusted without a `--version` check.
+
+### A SessionStart hook warms the pinned CLI install before the first edit
+
+A marketplace install has no lifecycle step, so `code-audit install`'s warm never ran
+on the `claude plugin install` path, and the first Write/Edit after a marketplace
+install still blocked on the pinned fallback's cold fetch. The plugin now registers a
+`SessionStart` hook (`startup|resume`) that background-warms the same pinned install,
+so the first edit is warm. It is deliberately non-blocking and silent: the install is
+`nohup`-backgrounded and returns immediately, and every failure (offline, missing
+`npm`, unreadable manifest) is a quiet no-op — a warm-the-cache nicety must never
+delay session start or complain. `--prefer-offline` makes a warm cache a pure cache
+hit (no registry re-check on every launch) while still fetching on a cold cache.
+
+## [3.10.0] — 2026-09-17
+
+### The npx fallback pins to the plugin's exact version and warms the cache
+
+The marketplace hook's last-resort path was `npx -y -p code-auditor-mcp@^3.0.0
+code-audit`. A `^` range can resolve a cached older CLI and silently drive the
+plugin with the wrong analyzer code, and on a cold cache that same npx fetch is a
+~5.7s download (the package bundles every platform's native binaries) that made the
+first Write/Edit after install block on a network fetch — the kind of apparent hang
+people disable hooks over.
+
+- `resolve_code_audit` now pins the npx fallback to the plugin's **exact** manifest
+  version (`npx -y -p code-auditor-mcp@<version> code-audit`), never a range. The
+  bundled-sibling path stays first — it is still the zero-cost path for npm installs
+  and costs nothing to keep.
+- `verify:dist` gained a guard that proves, in the environment the hook actually
+  reaches the fallback in (no other `code-audit` on PATH), the pinned npx command
+  resolves to a running CLI reporting that exact version — not assumed, demonstrated.
+- `code-audit install` now warms the npx cache for its own version, so the first
+  edit after setup is warm rather than a multi-second download. Non-fatal by design.
+
+### Stale installed CLIs are skipped, not hard failures
+
+`resolve_code_audit` now checks the `--version` of a project-local or global
+`code-audit` candidate before using it. A stale install (a mismatched version) is
+skipped with a one-line warning and resolution falls through to the pinned npx
+fetch, so a mismatched global no longer turns the hook into a hard failure.
+`assert_compatible` remains the final loud backstop on whatever resolves.
+
 ## [3.9.11] — 2026-09-15
 
 ### SQL assembled in a variable is no longer read as table-free

package/dist/analyzers/analyzerUtils.js

@@ -146,7 +146,7 @@ export function filterViolationsBySeverity(violations, minSeverity) {
     if (!minSeverity) {
         return violations;
     }
-    const severityOrder = { critical: 3, severe: 2, high: 1 };
+    const severityOrder = { critical: 3, severe: 2, advisory: 1 };
     const minLevel = severityOrder[minSeverity] || 0;
     return violations.filter(v => severityOrder[v.severity] >= minLevel);
 }
@@ -158,7 +158,7 @@ export function filterViolationsBySeverity(violations, minSeverity) {
 export function sortViolations(violations) {
     return violations.sort((a, b) => {
         // Sort by severity first
-        const severityOrder = { critical: 3, severe: 2, high: 1 };
+        const severityOrder = { critical: 3, severe: 2, advisory: 1 };
         const severityDiff = severityOrder[b.severity] - severityOrder[a.severity];
         if (severityDiff !== 0)
             return severityDiff;

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package/dist/analyzers/applicability.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"applicability.d.ts","sourceRoot":"","sources":["../../src/analyzers/applicability.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAEH,MAAM,WAAW,iBAAiB;IAChC,UAAU,EAAE,OAAO,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB;;;;;;OAMG;IACH,IAAI,CAAC,EAAE,eAAe,GAAG,aAAa,CAAC;CACxC;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6BG;AACH,eAAO,MAAM,mBAAmB,EAAE,aAAa,CAAC,MAAM,CAKrD,CAAC;AAEF;;;;;GAKG;AACH,wBAAgB,+BAA+B,CAC7C,QAAQ,EAAE,OAAO,EACjB,SAAS,EAAE,MAAM,GAChB,GAAG,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAWhC;AAUD;;;;;;GAMG;AACH,MAAM,WAAW,qBAAqB;IACpC,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,MAAM,EACd,gBAAgB,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,EACrD,UAAU,EAAE,MAAM,EAAE,GAAG,SAAS,GAC/B,iBAAiB,GAAG,IAAI,CAS1B"}
+{"version":3,"file":"applicability.d.ts","sourceRoot":"","sources":["../../src/analyzers/applicability.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAEH,MAAM,WAAW,iBAAiB;IAChC,UAAU,EAAE,OAAO,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB;;;;;;OAMG;IACH,IAAI,CAAC,EAAE,eAAe,GAAG,aAAa,CAAC;CACxC;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6BG;AACH,eAAO,MAAM,mBAAmB,EAAE,aAAa,CAAC,MAAM,CAMrD,CAAC;AAEF;;;;;GAKG;AACH,wBAAgB,+BAA+B,CAC7C,QAAQ,EAAE,OAAO,EACjB,SAAS,EAAE,MAAM,GAChB,GAAG,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAWhC;AAUD;;;;;;GAMG;AACH,MAAM,WAAW,qBAAqB;IACpC,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,MAAM,EACd,gBAAgB,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,EACrD,UAAU,EAAE,MAAM,EAAE,GAAG,SAAS,GAC/B,iBAAiB,GAAG,IAAI,CAS1B"}

package/dist/analyzers/applicability.js

@@ -49,6 +49,7 @@ export const WHOLE_PROGRAM_RULES = [
     'cross-domain/read-never-written',
     'cross-domain/no-validator-reachable',
     'unknown-table',
+    'stale-table-reference',
 ];
 /**
  * Build the `notApplicable` verdicts that suppress the whole-program rule class

package/dist/analyzers/applicability.js.map

@@ -1 +1 @@
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+{"version":3,"file":"applicability.js","sourceRoot":"","sources":["../../src/analyzers/applicability.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAeH;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6BG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAA0B;IACxD,iCAAiC;IACjC,iCAAiC;IACjC,qCAAqC;IACrC,eAAe;IACf,uBAAuB;CACxB,CAAC;AAEF;;;;;GAKG;AACH,MAAM,UAAU,+BAA+B,CAC7C,QAAiB,EACjB,SAAiB;IAEjB,MAAM,GAAG,GAAG,IAAI,GAAG,EAA6B,CAAC;IACjD,IAAI,CAAC,QAAQ;QAAE,OAAO,GAAG,CAAC;IAC1B,KAAK,MAAM,MAAM,IAAI,mBAAmB,EAAE,CAAC;QACzC,GAAG,CAAC,GAAG,CAAC,MAAM,EAAE;YACd,UAAU,EAAE,KAAK;YACjB,IAAI,EAAE,eAAe;YACrB,MAAM,EAAE,2DAA2D,SAAS,UAAU;SACvF,CAAC,CAAC;IACL,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED;;;;;GAKG;AACH,MAAM,0BAA0B,GAAG,CAAC,QAAQ,EAAE,WAAW,EAAE,iBAAiB,EAAE,cAAc,CAAC,CAAC;AAc9F;;;;;;;;;;;;;GAaG;AACH,MAAM,UAAU,yBAAyB,CACvC,MAAc,EACd,gBAAqD,EACrD,UAAgC;IAEhC,IAAI,MAAM,KAAK,oBAAoB,EAAE,CAAC;QACpC,OAAO,qCAAqC,CAAC,gBAAgB,EAAE,UAAU,CAAC,CAAC;IAC7E,CAAC;IACD,MAAM,gBAAgB,GAAG,iBAAiB,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IACvD,IAAI,gBAAgB,KAAK,SAAS,EAAE,CAAC;QACnC,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,EAAE,gBAAgB,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC;IAC9E,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,iBAAiB,GAAgC,IAAI,GAAG,CAAC;IAC7D,sEAAsE;IACtE,kEAAkE;IAClE,CAAC,mBAAmB,EAAE,0IAA0I,CAAC;IACjK,CAAC,kBAAkB,EAAE,gJAAgJ,CAAC;IACtK,CAAC,iBAAiB,EAAE,kFAAkF,CAAC;IACvG,CAAC,mBAAmB,EAAE,kFAAkF,CAAC;IACzG,CAAC,iBAAiB,EAAE,yHAAyH,CAAC;IAC9I,CAAC,eAAe,EAAE,uFAAuF,CAAC;IAE1G,iFAAiF;IACjF,CAAC,YAAY,EAAE,wGAAwG,CAAC;IAExH,4FAA4F;IAC5F,CAAC,gBAAgB,EAAE,iGAAiG,CAAC;IACrH,CAAC,qBAAqB,EAAE,+FAA+F,CAAC;IACxH,CAAC,kBAAkB,EAAE,4FAA4F,CAAC;CACnH,CAAC,CAAC;AAEH;;;;GAIG;AACH,SAAS,qCAAqC,CAC5C,gBAAqD,EACrD,UAAgC;IAEhC,0EAA0E;IAC1E,MAAM,eAAe,GAAc,gBAAgB,EAAE,eAAwC,IAAI,EAAE,CAAC;IACpG,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC;QAAE,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;IAE5D,MAAM,gBAAgB,GACnB,gBAAgB,EAAE,gBAAyC,IAAI,0BAA0B,CAAC;IAC7F,MAAM,OAAO,GACV,gBAAgB,EAAE,OAAe,IAAI,EAAE,CAAC;IAE3C,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEpF,kFAAkF;IAClF,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;QAC7B,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,IAAI,EAAE,EAAE,CAAC;YACxC,KAAK,MAAM,MAAM,IAAI,KAAK,CAAC,OAAO,IAAI,EAAE,EAAE,CAAC;gBACzC,IAAI,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,CAAC,EAAE,CAAC;oBACzD,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;gBAC9B,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;IAED,oFAAoF;IACpF,IAAI,UAAU,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,EAAE,CAAC;QACxE,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;IAC9B,CAAC;IAED,OAAO;QACL,UAAU,EAAE,KAAK;QACjB,MAAM,EAAE,iDAAiD;KAC1D,CAAC;AACJ,CAAC"}

package/dist/analyzers/cross-language/DependencyGraphBuilder.d.ts

@@ -190,7 +190,7 @@ interface ReferenceIndex {
 }
 export interface DependencyIssue {
     type: 'circular-dependency' | 'tight-coupling' | 'hub-nodes' | 'orphaned-nodes';
-    severity: 'critical' | 'severe' | 'high';
+    severity: 'critical' | 'severe' | 'advisory';
     description: string;
     affectedNodes: string[];
     impact: 'high' | 'medium' | 'low';

package/dist/analyzers/cross-language/DependencyGraphBuilder.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"DependencyGraphBuilder.d.ts","sourceRoot":"","sources":["../../../src/analyzers/cross-language/DependencyGraphBuilder.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EACL,eAAe,EACf,cAAc,EACd,cAAc,EACd,eAAe,EACf,iBAAiB,EACjB,mBAAmB,EACnB,cAAc,EACf,MAAM,8BAA8B,CAAC;AAEtC,MAAM,WAAW,mBAAmB;IAClC,2BAA2B,CAAC,EAAE,OAAO,CAAC;IACtC,2BAA2B,CAAC,EAAE,OAAO,CAAC;IACtC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,gBAAgB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC5B,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,gBAAgB,CAAC,EAAE,OAAO,CAAC;CAC5B;AAMD,cAAM,0BAA0B;IAC9B,SAAS,CAAC,QAAQ,EAAE,mBAAmB,EAAE,CAAM;IAC/C,SAAS,CAAC,UAAU,EAAE,cAAc,EAAE,CAAM;IAC5C,SAAS,CAAC,OAAO,EAAE,mBAAmB,CAAC;IAEvC,YAAY,OAAO,GAAE,mBAAwB,EAS5C;IAED;;OAEG;IACH,SAAS,CAAC,WAAW,CAAC,UAAU,EAAE,cAAc,EAAE,EAAE,KAAK,EAAE,cAAc,EAAE,GAAG,cAAc,EAAE,CAY7F;IAED;;OAEG;IACH,SAAS,CAAC,mBAAmB,CAAC,MAAM,EAAE,mBAAmB,GAAG,MAAM,CAmBjE;IAED;;OAEG;IACH,SAAS,CAAC,sBAAsB,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAqB3E;IAED;;OAEG;IACH,SAAS,CAAC,kBAAkB,CAAC,KAAK,EAAE,cAAc,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAW3E;IAED;;OAEG;IACH,SAAS,CAAC,gCAAgC,CAAC,UAAU,EAAE,cAAc,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAW9F;IAED;;;;;;;;OAQG;IACH,SAAS,CAAC,iBAAiB,CACzB,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,EAC9B,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC9B,MAAM,CAsBR;IAED;;;;;;;;;OASG;IACH,SAAS,CAAC,gCAAgC,CAAC,KAAK,EAAE,cAAc,EAAE,EAAE,KAAK,EAAE,cAAc,EAAE,GAAG,MAAM,CAwCnG;IAED;;OAEG;IACH,SAAS,CAAC,0BAA0B,CAAC,KAAK,EAAE,eAAe,GAAG;QAAE,KAAK,EAAE,MAAM,EAAE,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE,EAAE,CA4CpG;IAED;;;;;;;OAOG;IACH,SAAS,CAAC,YAAY,CAAC,KAAK,EAAE,eAAe,GAAG,KAAK,CAAC;QAAE,IAAI,EAAE,cAAc,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC,CAqBjG;IAED;;;;;;;;;;OAUG;IACH,SAAS,CAAC,iBAAiB,CAAC,KAAK,EAAE,eAAe,EAAE,KAAK,EAAE,cAAc,GAAG,cAAc,EAAE,CA6B3F;IAED;;OAEG;IACH,SAAS,CAAC,oBAAoB,CAAC,KAAK,EAAE,eAAe,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,CA2BxF;IAED;;OAEG;IACH,SAAS,CAAC,uBAAuB,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,MAAM,CAQ9D;IAED;;OAEG;IACH,SAAS,CAAC,UAAU,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAS9C;CACF;AAMD,cAAM,+BAAgC,SAAQ,0BAA0B;IACtE;;OAEG;IACH,SAAS,CAAC,cAAc,CAAC,QAAQ,EAAE,mBAAmB,EAAE,GAAG,mBAAmB,EAAE,CAkB/E;IAED;;OAEG;IACH,SAAS,CAAC,WAAW,CAAC,QAAQ,EAAE,mBAAmB,EAAE,GAAG,cAAc,EAAE,CAYvE;IAED;;OAEG;IACH,SAAS,CAAC,gBAAgB,CAAC,MAAM,EAAE,mBAAmB,GAAG,MAAM,CAK9D;IAED;;OAEG;IACH,SAAS,CAAC,YAAY,CAAC,KAAK,EAAE,cAAc,EAAE,EAAE,KAAK,EAAE,cAAc,EAAE,GAAG,eAAe,EAAE,CA+C1F;IAED;;OAEG;IACH,SAAS,CAAC,gBAAgB,CACxB,KAAK,EAAE,cAAc,EAAE,EACvB,KAAK,EAAE,cAAc,EAAE,EACvB,MAAM,EAAE,eAAe,EAAE,GACxB,iBAAiB,CAenB;IAED;;OAEG;IACH,SAAS,CAAC,qBAAqB,CAC7B,QAAQ,EAAE,MAAM,EAAE,EAClB,QAAQ,EAAE,mBAAmB,EAAE,EAC/B,UAAU,EAAE,cAAc,EAAE,EAC5B,QAAQ,EAAE,MAAM,GACf,mBAAmB,EAAE,CAuBvB;IAED;;OAEG;IACH,SAAS,CAAC,sBAAsB,CAAC,KAAK,EAAE,cAAc,EAAE,GAAG,IAAI,CAM9D;CACF;AAMD;;GAEG;AACH,qBAAa,sBAAuB,SAAQ,+BAA+B;IACzE;;;;;OAKG;IACG,UAAU,CACd,QAAQ,EAAE,mBAAmB,EAAE,EAC/B,UAAU,EAAE,cAAc,EAAE,GAC3B,OAAO,CAAC,eAAe,CAAC,CAgC1B;IAED;;;;;;;OAOG;IACG,aAAa,CACjB,eAAe,EAAE,MAAM,EAAE,EACzB,QAAQ,EAAE,mBAAmB,EAAE,EAC/B,UAAU,EAAE,cAAc,EAAE,EAC5B,KAAK,GAAE,MAAU,GAChB,OAAO,CAAC,eAAe,CAAC,CAS1B;IAED;;;;OAIG;IACG,uBAAuB,CAAC,KAAK,EAAE,eAAe,GAAG,OAAO,CAAC;QAC7D,WAAW,EAAE,MAAM,CAAC;QACpB,MAAM,EAAE,eAAe,EAAE,CAAC;QAC1B,WAAW,EAAE,oBAAoB,EAAE,CAAC;KACrC,CAAC,CAgBD;IAED,2EAA2E;IAC3E,OAAO,CAAC,gBAAgB;IAcxB,iFAAiF;IACjF,OAAO,CAAC,kBAAkB;IAgB1B,iCAAiC;IACjC,OAAO,CAAC,cAAc;IActB;;;;;;;;;OASG;IACH,OAAO,CAAC,qBAAqB;IA+B7B,sCAAsC;IACtC,OAAO,CAAC,iBAAiB;IAczB,8DAA8D;IAC9D,OAAO,CAAC,WAAW;CAkBpB;AAsBD,gFAAgF;AAChF,UAAU,cAAc;IACtB,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC;IACjC,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC;CACvC;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,qBAAqB,GAAG,gBAAgB,GAAG,WAAW,GAAG,gBAAgB,CAAC;IAChF,QAAQ,EAAE,UAAU,GAAG,QAAQ,GAAG,UAAU,CAAC;IAC7C,WAAW,EAAE,MAAM,CAAC;IACpB,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,MAAM,EAAE,MAAM,GAAG,QAAQ,GAAG,KAAK,CAAC;IAClC,6FAA6F;IAC7F,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACnC;AAED,MAAM,WAAW,oBAAoB;IACnC,IAAI,EAAE,cAAc,GAAG,iBAAiB,GAAG,wBAAwB,GAAG,gBAAgB,CAAC;IACvF,QAAQ,EAAE,MAAM,GAAG,QAAQ,GAAG,KAAK,CAAC;IACpC,WAAW,EAAE,MAAM,CAAC;IACpB,cAAc,EAAE,MAAM,CAAC;IACvB,sEAAsE;IACtE,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;CAC1B"}

package/dist/analyzers/cross-language/DependencyGraphBuilder.js

@@ -316,7 +316,7 @@ class DependencyGraphBuilderCore {
                 case 'severe':
                     score -= 10;
                     break;
-                case 'high':
+                case 'advisory':
                     score -= 5;
                     break;
             }
@@ -588,7 +588,7 @@ export class DependencyGraphBuilder extends DependencyGraphBuilderTraversal {
         const label = (ids) => ids.map(id => idToName.get(id) ?? id);
         const clusters = this.findTightlyCoupledClusters(graph);
         this.recordCheck(sink, clusters.length, clusters.flatMap(c => c.nodes), {
-            issueType: 'tight-coupling', severity: 'high', impact: 'medium',
+            issueType: 'tight-coupling', severity: 'severe', impact: 'medium',
             issueDesc: () => clusters.map(c => `${label(c.nodes).join(', ')} (${(c.coupling * 100).toFixed(0)}%)`).join('; '),
             suggestionType: 'reduce-coupling', priority: 'medium',
             suggestionDesc: 'Reduce coupling between modules using interfaces and abstractions',
@@ -602,7 +602,7 @@ export class DependencyGraphBuilder extends DependencyGraphBuilderTraversal {
     recordHubCheck(sink, graph) {
         const hubNodes = this.findHubNodes(graph);
         this.recordCheck(sink, hubNodes.length, hubNodes.map(h => h.node.id), {
-            issueType: 'hub-nodes', severity: 'high', impact: 'medium',
+            issueType: 'hub-nodes', severity: 'severe', impact: 'medium',
             issueDesc: () => hubNodes.map(h => `${h.node.name} (${h.outDegree})`).join(', '),
             suggestionType: 'split-responsibilities', priority: 'medium',
             suggestionDesc: 'Split large modules to reduce their dependency burden',

package/dist/analyzers/cross-language/DependencyGraphBuilder.js.map

@@ -1 +1 @@
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package/dist/analyzers/crossDomain/CrossDomainAnalyzer.d.ts

@@ -15,8 +15,8 @@
  *   R4 — Coverage by Importance:
  *     cross-domain/uncovered-risk        — Top-risk function with no test coverage
  *
- * Findings emit at `severe` (read-never-written, no-validator-reachable) or
- * `high` (written-never-read, multi-table-write, uncovered-risk) severity.
+ * Findings emit at `severe` (read-never-written, no-validator-reachable,
+ * written-never-read, multi-table-write) or `advisory` (uncovered-risk) severity.
  * Higher tiers require Spec 11 R5 recalibration bars (precision ≥ 0.95
  * AND judged-true ≥ 0.90) on real-corpus evidence.
  */

package/dist/analyzers/crossDomain/CrossDomainAnalyzer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CrossDomainAnalyzer.d.ts","sourceRoot":"","sources":["../../../src/analyzers/crossDomain/CrossDomainAnalyzer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAKH,OAAO,KAAK,EAAE,cAAc,EAAoD,MAAM,gBAAgB,CAAC;AACvG,OAAO,EAAE,iBAAiB,EAAE,MAAM,sCAAsC,CAAC;AAmQzE;;GAEG;AACH,qBAAa,mBAAoB,SAAQ,iBAAiB;IACxD,QAAQ,CAAC,IAAI,kBAAiB;IAC9B,QAAQ,CAAC,WAAW,sFACiE;IACrF,QAAQ,CAAC,QAAQ,kBAAkB;IAEnC;;;;;;;;OAQG;IACG,OAAO,CACX,KAAK,EAAE,MAAM,EAAE,EACf,MAAM,GAAE,GAAQ,EAChB,OAAO,GAAE,GAAQ,GAChB,OAAO,CAAC,cAAc,CAAC,CA8BzB;IAED,+DAA+D;IAC/D,OAAO,CAAC,YAAY;IA+BpB,sDAAsD;IACtD,OAAO,CAAC,kBAAkB;IAU1B,yCAAyC;IACnC,UAAU,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAEjC;CACF"}
+{"version":3,"file":"CrossDomainAnalyzer.d.ts","sourceRoot":"","sources":["../../../src/analyzers/crossDomain/CrossDomainAnalyzer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAKH,OAAO,KAAK,EAAE,cAAc,EAAoD,MAAM,gBAAgB,CAAC;AACvG,OAAO,EAAE,iBAAiB,EAAE,MAAM,sCAAsC,CAAC;AA4RzE;;GAEG;AACH,qBAAa,mBAAoB,SAAQ,iBAAiB;IACxD,QAAQ,CAAC,IAAI,kBAAiB;IAC9B,QAAQ,CAAC,WAAW,sFACiE;IACrF,QAAQ,CAAC,QAAQ,kBAAkB;IAEnC;;;;;;;;OAQG;IACG,OAAO,CACX,KAAK,EAAE,MAAM,EAAE,EACf,MAAM,GAAE,GAAQ,EAChB,OAAO,GAAE,GAAQ,GAChB,OAAO,CAAC,cAAc,CAAC,CA8BzB;IAED,+DAA+D;IAC/D,OAAO,CAAC,YAAY;IA+BpB,sDAAsD;IACtD,OAAO,CAAC,kBAAkB;IAU1B,yCAAyC;IACnC,UAAU,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAEjC;CACF"}

package/dist/analyzers/crossDomain/CrossDomainAnalyzer.js

@@ -15,8 +15,8 @@
  *   R4 — Coverage by Importance:
  *     cross-domain/uncovered-risk        — Top-risk function with no test coverage
  *
- * Findings emit at `severe` (read-never-written, no-validator-reachable) or
- * `high` (written-never-read, multi-table-write, uncovered-risk) severity.
+ * Findings emit at `severe` (read-never-written, no-validator-reachable,
+ * written-never-read, multi-table-write) or `advisory` (uncovered-risk) severity.
  * Higher tiers require Spec 11 R5 recalibration bars (precision ≥ 0.95
  * AND judged-true ≥ 0.90) on real-corpus evidence.
  */
@@ -26,6 +26,26 @@ import { UniversalAnalyzer } from '../../languages/UniversalAnalyzer.js';
 import { parseFile } from '../../languages/adapterBridge.js';
 import { VALIDATOR_PACKAGES } from '../provenance.js';
 import { makeVisitorStatus } from '../../pipeline.js';
+/**
+ * Amendment A — schema_usage identity is a coordinate, not a name. The display
+ * label for a row is the declaration name when present, else a coordinate
+ * fallback (`fn:<line>:<column>`) for anonymous handlers, else `top-level`.
+ * Mirrors `functionIdentityLabel` in the schema analyzer; kept local here
+ * because the cross-domain analyzer is SQL-only and does not import the AST
+ * helper.
+ *
+ * A top-level row carries its own coordinate (`function_name = 'top-level'` and a
+ * non-null `function_start_line`/`function_start_column`), so the coordinate —
+ * not the `top-level` sentinel — is the label: two top-level usages in the same
+ * file stay distinct instead of collapsing into one absent-coordinate bucket.
+ */
+function usageIdentityLabel(functionName, startLine, startColumn) {
+    if (startLine == null)
+        return 'top-level';
+    if (functionName === 'top-level')
+        return `fn:${startLine}:${startColumn}`;
+    return functionName ?? `fn:${startLine}:${startColumn}`;
+}
 /** Chunked IN-clause bound (SQLite max host params, conservative). */
 const SQLITE_MAX_VARIABLES = 900;
 function resolveFileScope(config) {
@@ -258,7 +278,7 @@ function detectWrittenNeverRead(indexHandle, scope) {
     const violations = [];
     const fp = scope.apply('file_path');
     const rows = indexHandle
-        .query(`SELECT DISTINCT table_name, file_path, function_name, line, usage_type
+        .query(`SELECT DISTINCT table_name, file_path, function_name, function_start_line, function_start_column, line, usage_type
        FROM schema_usage
        WHERE usage_type IN ('insert', 'update', 'delete', 'create')
          ${fp.clause}
@@ -277,11 +297,11 @@ function detectWrittenNeverRead(indexHandle, scope) {
             file: row.file_path,
             line: row.line,
             column: 0,
-            severity: 'high',
+            severity: 'severe',
             message: `Table '${row.table_name}' is written (${row.usage_type}) but never read (SELECT). Consider removing unused writes or adding read paths.`,
             rule: 'cross-domain/written-never-read',
             analyzer: ANALYZER_NAME,
-            functionName: row.function_name,
+            functionName: usageIdentityLabel(row.function_name, row.function_start_line, row.function_start_column),
         });
     }
     return violations;
@@ -296,7 +316,7 @@ function detectReadNeverWritten(indexHandle, scope) {
     const violations = [];
     const fp = scope.apply('file_path');
     const rows = indexHandle
-        .query(`SELECT DISTINCT table_name, file_path, function_name, line, usage_type
+        .query(`SELECT DISTINCT table_name, file_path, function_name, function_start_line, function_start_column, line, usage_type
        FROM schema_usage
        WHERE usage_type = 'select'
          ${fp.clause}
@@ -318,7 +338,7 @@ function detectReadNeverWritten(indexHandle, scope) {
             message: `Table '${row.table_name}' is read (SELECT) but never written (INSERT/UPDATE/DELETE). This may be an external/managed table, or indicate missing write coverage.`,
             rule: 'cross-domain/read-never-written',
             analyzer: ANALYZER_NAME,
-            functionName: row.function_name,
+            functionName: usageIdentityLabel(row.function_name, row.function_start_line, row.function_start_column),
         });
     }
     return violations;
@@ -336,24 +356,28 @@ function detectTransactionBoundaryRisk(indexHandle, txnTableMax, scope) {
     const fp = scope.apply('su.file_path');
     // Query schema_usage directly (no JOIN on functions) so this detector
     // works whether or not deepSync has populated the functions table.
+    // Amendment A — group by the coordinate identity, not the display name, so
+    // distinct anonymous handlers on the same line (or different lines) do not
+    // collapse into one pseudo-function.
     const writerRows = indexHandle
-        .query(`SELECT su.function_name, su.file_path, su.table_name, MIN(su.line) as line
+        .query(`SELECT su.function_name, su.function_start_line, su.function_start_column, su.file_path, su.table_name, MIN(su.line) as line
        FROM schema_usage su
        WHERE su.usage_type IN ('insert', 'update', 'delete', 'create')
        ${fp.clause}
-       GROUP BY su.function_name, su.file_path, su.table_name
-       ORDER BY su.function_name, su.file_path`, fp.params);
+       GROUP BY su.file_path, su.function_start_line, su.function_start_column, su.table_name
+       ORDER BY su.file_path, su.function_start_line, su.function_start_column`, fp.params);
     if (writerRows.length === 0)
         return [];
     const funcWrites = groupWriterTables(writerRows);
     const graph = resolveCallGraphContext(indexHandle);
     return flagTransactionBoundaryWrites(funcWrites, indexHandle, graph, txnTableMax);
 }
-/** Group written tables by (file_path, function_name) key. */
+/** Group written tables by coordinate-identity key (display name is the label). */
 function groupWriterTables(writerRows) {
     const funcWrites = new Map();
     for (const row of writerRows) {
-        const key = `${row.file_path}::${row.function_name}`;
+        const label = usageIdentityLabel(row.function_name, row.function_start_line, row.function_start_column);
+        const key = `${row.file_path}::${label}`;
         const entry = funcWrites.get(key);
         if (entry) {
             entry.tables.add(row.table_name);
@@ -447,7 +471,7 @@ function flagTransactionBoundaryWrites(funcWrites, indexHandle, graph, txnTableM
                 file: funcData.filePath,
                 line: funcData.line,
                 column: 0,
-                severity: 'high',
+                severity: 'severe',
                 message: `Function writes to ${allTables.size} distinct tables (threshold: ${txnTableMax}): ${tableList}. This may indicate transaction-boundary risk — consider splitting writes across smaller transactional scopes.`,
                 rule: 'cross-domain/multi-table-write',
                 analyzer: ANALYZER_NAME,
@@ -703,7 +727,7 @@ function detectMeasuredUncovered(indexHandle, topRiskDecile) {
             file: fn.filePath,
             line: fn.lineNumber ?? 1,
             column: 0,
-            severity: 'high',
+            severity: 'advisory',
             message: `Exported function '${fn.functionName}' (risk ${fn.riskScore.toFixed(3)}) has no measured test coverage. ` +
                 `Top imported functions should have test coverage. Import coverage data with 'code-audit coverage --import <path>'.` +
                 (staleWarning ?? ''),
@@ -763,7 +787,7 @@ function flagUnreachedHighRisk(highRiskFns, reachableIds) {
             file: fn.file_path,
             line: fn.line_number,
             column: 0,
-            severity: 'high',
+            severity: 'advisory',
             message: `Exported function '${fn.name}' (risk ${fn.risk_score.toFixed(3)}) is not reachable from known test files. ` +
                 `Add test coverage or import measured coverage with 'code-audit coverage --import <path>'.`,
             rule: 'cross-domain/uncovered-risk',