code-auditor-mcp 3.4.1 → 3.4.3

package/.claude-plugin/marketplace.json

@@ -10,7 +10,7 @@
       "name": "code-auditor",
       "source": "./plugin",
       "description": "Diff-scoped code quality auditing on every edit. Indexes your codebase, enforces invariants, and feeds violations back to the agent so fixes happen inline.",
-      "version": "3.4.1",
+      "version": "3.4.3",
       "author": {
         "name": "Ben Hammond"
       },

package/CHANGELOG.md

@@ -2,6 +2,73 @@
 
 All notable changes to the Code Auditor MCP project.
 
+## [3.4.3] — 2026-07-26
+
+### R12: Tailwind Compile-Probe Migration — Zero Hand-Curated Dictionaries
+
+Replaced the ~4,000-entry hand-curated Tailwind class-name dictionary with a compile-probe oracle (`tailwindProbe.ts`) that validates classes against the audited project's own installed `tailwindcss` package. The project's compiler IS the authority on what classes exist — no maintained replica.
+
+**Rationale**: The external-authority-as-oracle law (see GROUND-TRUTH.md) holds that when an external system defines what's valid, that system is the oracle — not our maintained replica of it. Hand-curating a Tailwind class dictionary is a losing game: the dictionary drifts from the actual Tailwind version, misses plugin classes, and requires maintenance on every Tailwind release.
+
+#### Architecture
+
+- **Primary (v4)**: Uses `compile()` with `@apply` probe stylesheets to validate classes
+- **Fallback (v3)**: Uses `resolveConfig()` + theme generation
+- **Structural parsing**: Arbitrary values (`prefix-[...]`), variant prefixes (`hover:`, `md:`, etc.), opacity modifiers (`utility/N`), and negative utilities (`-utility`) are parsed via regex patterns — never enumerated
+- **Fail-open rule**: If the probe can't initialize (no tailwindcss found), `configFailed` is true and the `styles/undefined-class` detector emits a visible warning and returns early
+
+#### New Module
+
+- **`src/styles/tailwindProbe.ts`**: Compile-probe module. Dynamically loads the audited project's `tailwindcss`, validates class-name batches via `@apply` probe stylesheets (v4) or config theme generation (v3). Gracefully handles missing tailwindcss with `configFailed` flag.
+
+#### Refactored Modules
+
+- **`src/styles/tailwindUtilityExpander.ts`**: Removed all hand-curated class-name dictionaries (~800 lines deleted). `init()` only creates a probe when both `useProjectConfig === true` AND `projectRoot` is truthy. `resolve()` pipeline: probe cache → customClasses → opacity modifier → arbitrary-value → negative utility → variant prefix strip + retry.
+- **`src/analyzers/universal/UniversalStylesAnalyzer.ts`**: `detectUndefinedClasses` now calls `await expander.init()` before resolution. When `configFailed`: emits `styles/undefined-class-disabled` warning and returns early. When probeReady: batch-probes unknown classes, then resolves each from cache. Added `tailwindClasses` config field for test-environment seeding.
+- **`src/types.ts`**: Added `tailwindClasses?: string[]` to `StylesAnalyzerConfig` for test-environment seeding.
+
+### Changed Files
+
+| File | Change |
+|------|--------|
+| `src/styles/tailwindProbe.ts` | **New** — compile-probe module (v4 compile + v3 resolveConfig fallback) |
+| `src/styles/tailwindUtilityExpander.ts` | Removed all hand-curated dictionaries; structural-only + probe validation |
+| `src/analyzers/universal/UniversalStylesAnalyzer.ts` | Async init + batch-probe in detectUndefinedClasses |
+| `src/analyzers/universal/UniversalStylesAnalyzer.spec.ts` | KNOWN_TAILWIND fixture (2 test classes); resetTailwindExpander in afterAll |
+| `src/types.ts` | `tailwindClasses?: string[]` on StylesAnalyzerConfig |
+
+### R13: Default-Analyzer Ghost Fix — Schema, Documentation, Component
+
+**Discovery**: Git archaeology (`git log -p -G enabledAnalyzers`) revealed that `defaults.ts` has never included `schema` in `enabledAnalyzers` on the main branch — not since the schema analyzer was registered in 3.0.0. The July diagnostic's 6,770 schema findings ran through a non-default path (CLI override or bench harness). Default-config users never had the schema analyzer.
+
+**Two ghost names** also sat in the defaults list since initial commit `02f3fe8`:
+- `security` — never existed as a registered analyzer. The category tag on `data-access` is `category: 'security'`, not a standalone analyzer.
+- `component` — renamed to `react` at some point; the registry key is `react`, and `component` never matched.
+
+**Two more absentees** found during cross-reference:
+- `react` — registered since inception, never in the defaults list (users who wanted React analysis had to explicitly enable it)
+- `documentation` — same class of bug as `schema`: registered but never enabled by default
+
+**Fix**: Corrected the defaults list to match the registry's non-experimental set:
+- `security` → removed (ghost), `component` → `react` (actual key)
+- `documentation` and `react` added to defaults (same bug class as `schema`)
+
+**Guard test** (`src/__tests__/defaultsRegistry.test.ts`): Import-time test asserting:
+1. No ghost analyzer names in defaults (present in defaults, missing from registry)
+2. No duplicate entries
+3. Every non-conditional registry key present in defaults (`invariants` is conditional — Spec 05 R3.1)
+4. Canonical order matches
+
+This is a **behavior change for every user**: `schema` and `documentation` are now enabled by default for the first time. Expect new suggestion-tier findings (`unknown-table`, `missing-function-docs`, etc.) that were always meant to ship but never did.
+
+#### Changed Files
+
+| File | Change |
+|------|--------|
+| `src/config/defaults.ts` | Corrected enabledAnalyzers: security→removed, component→react, +documentation |
+| `src/auditRunner.ts` | Export DEFAULT_ANALYZERS for the guard test |
+| `src/__tests__/defaultsRegistry.test.ts` | **New** — guard: defaults ≡ registry (no ghosts, no absentees) |
+
 ## [3.4.1] — 2026-07-24
 
 ### Patch Release — Production Bug Fixes
@@ -61,6 +128,143 @@ The Style Intelligence analyzer's file discovery didn't include `.css`/`.scss` e
 | `src/cli-integration.spec.ts` | A2 gate expansion — doc-CLI parity tests (16 pass, 6 skip) |
 | `GROUND-TRUTH.md` | §9: Known Issues — SDK/Integration Surface |
 
+## [3.4.2] — 2026-07-26
+
+### R4: SQL Extraction Regression Fix
+
+Post-release dogfood triage surfaced false positives from three sources in the SQL extraction pipeline. None were structural bugs in the detection logic — they were routing failures: SQL-looking JS patterns reaching the extraction stage without DB context gates.
+
+**The root cause was a one-emitter-law violation**: Spec 15's ORM extraction path introduced a **second emitter** — `DrizzleAdapter.extractTableReferences()` — that scanned every `call_expression` in every `.ts` file for `.from()`/`.insert()`/`.delete()` patterns. It bypassed the shared gates that protect the three regular SQL extraction paths (tagged templates gate on `sql` identifiers, DB-call patterns gate on provenance + db-member checks, file-type gates on `.sql`/migration directories). The Drizzle adapter had its own gate system — but that system was incomplete: no file-level import check, no expression-level companion requirements. Generic method calls like `Array.from(map)` in non-Drizzle files reached the extraction stage and produced false positives across rule IDs `loop-query` and `sql-injection`.
+
+**Registry accounting** (rule IDs affected by the Drizzle emitter, confirmed by Spec 22 fixture coverage):
+| Rule ID | Affected? | Rationale |
+|---------|-----------|-----------|
+| `schema/loop-query` | Yes | Drizzle emitted table refs → N+1 detection in loop context |
+| `schema/sql-injection` | Yes | Drizzle emitted raw refs → injection check on unescaped inputs |
+| `data-access/loop-query` | Yes | Same Drizzle-emitted refs, data-access analyzer path |
+| `data-access/sql-injection` | Yes | Same Drizzle-emitted refs, data-access analyzer path |
+| `schema/unknown-table` | Yes | Drizzle emitted table names → unknown-table validation |
+| `schema/missing-schemas` | Indirect | Depends on table references from the same pipeline |
+| All other rule IDs | No | No Drizzle-origin data reaches these detection chains |
+
+The Prisma adapter was **not a rogue path**: `prisma.modelName.op()` syntax requires the `prisma.` identifier prefix and known operation names — a strong gate by construction. Regular SQL extraction paths (1–3) all have their own independent strong gates. Drizzle was the **only** gate-incomplete emitter.
+
+**Post-verification** (2026-07-20): Re-ran the registry accounting across all four SQL extraction paths (tagged-template, DB-call, .sql/migration, ORM adapters). Confirmed Drizzle was the sole gate-incomplete emitter pre-fix — no other path lacked self-gating. The two-level gate (file import + companion methods) fully closes the vector.
+
+#### R4.2: Routing Gates (Drizzle Adapter)
+
+**File-level gate** (`DrizzleAdapter.extractTableReferences()`): The adapter now checks whether the file imports `drizzle-orm` before scanning for query operations. Without this gate, `Array.from(map)` in any `.ts` file produces a false `select` finding — the `.from()` method on `Array` has no semantic relationship to Drizzle query building.
+
+**Expression-level gates**: Each extraction pattern now requires companion Drizzle methods to confirm DB context:
+- `.from(identifier)` requires `.select()` in the same expression
+- `.insert(identifier)` requires `.values()` in the same expression
+- `.delete(identifier)` requires `.where()` in the same expression
+
+These gates prevent generic `.from()`, `.insert()`, `.delete()` method calls on non-DB objects from being misinterpreted as table references.
+
+#### R4.2: Routing Gates (Data-Access Shared Gate)
+
+**Variable-assignment gate** (`containsSQLStructure()`): Raised the SQL keyword threshold from 1 to 2 for variable-assignment detection. A single `FROM` substring match (e.g., inside `Array.from()`) produced ~120 false positives on the recall corpus. Genuine SQL in variable assignments (`const q = "SELECT * FROM users"`) contains ≥2 keywords and still passes.
+
+#### R4.3: SQL Alias Filtering
+
+The SQL table-reference regex captures table names after `FROM`/`JOIN` keywords by matching `[\p{L}\p{N}_]+` followed by a word boundary. In `JOIN u.posts`, the `.` after `u` creates a word boundary, so the regex captures `u` — an alias for `users`, not a real table. Without filtering, every `JOIN alias.column` pattern produces a false `unknown-table` violation for the alias.
+
+**Fix**: `extractAliasIdentifiers()` scans the SQL text for two alias patterns:
+1. **Explicit**: `FROM x AS t` / `JOIN x AS t` — `AS` keyword
+2. **Bare**: `FROM x t` / `JOIN x t` — no `AS` keyword, guarded by after-match dot check and `isSqlKeyword()` filtering
+
+Extracted alias identifiers are subtracted from the table-reference list in `parseSqlTables()` before the list is returned.
+
+#### R4.4: Bench Fixtures
+
+- `src/no-sql-signal.ts` (both `data-access` and `schema` corpora): `Array.map`, `.toLowerCase`, `.insert()`, `.delete()`, `.update()` on plain JS objects — asserted as near-miss files producing zero SQL findings across all SQL-adjacent rule IDs.
+- `src/aliased-queries.ts` (schema corpus): queries with explicit and bare aliases referencing only known tables — asserted as near-miss, confirming alias filtering prevents false `unknown-table` violations.
+
+### R1–R3 (Completed Previously)
+
+- **R1**: `styles/undefined-class` — generated Tailwind utility dictionary; undefined-class detection now distinguishes "unknown in Tailwind" from "class from a different framework"
+- **R2**: `styles/token-bypass` — CSS custom property definitions (`--color:`) and `var()` references are no longer flagged as token bypasses
+- **R3**: `styles/value-drift` — categorical CSS properties (`display`, `position`, `overflow`, etc.) excluded from value-drift detection; their values are enumerations, not magnitudes
+
+### R5: Conventions — Naming Partitioning and Usage-Pair Noise Reduction
+
+Post-release triage surfaced ~200 false positives in the conventions analyzer, concentrated in two areas: misleading naming conventions from mixed populations, and usage-pair correlation on built-in/stdlib methods where co-occurrence is arithmetic, not project convention.
+
+#### R5.1: Naming Conventions Partitioned by Export Kind
+
+Before this fix, the convention miner computed a single dominant casing mode per directory across all exported symbols. A directory with 40 PascalCase React components, 5 camelCase hooks, and 1 snake_case utility function would generate a `conventions/naming` violation for the utility — the miner treated all exports as a single population. With this fix, exports are partitioned into four populations before computing a mode:
+
+- **React components** — JSX-returning / `.tsx` PascalCase entities
+- **Hooks** — `use`-prefixed functions
+- **Functions** — all other exported functions
+- **Constants** — top-level literal-initialized exports
+
+Each population must meet `minCorpus` independently; sub-threshold populations produce no conventions and no violations. Stored in the `export_kind` column of the `conventions` table (schema migration v8).
+
+**Impact**: Eliminates false naming violations where legitimate convention in one population (e.g., PascalCase components) was used to judge a different population's naming (e.g., `use`-prefixed hooks or single utility functions).
+
+#### R5.2: Built-in/Stdlib Excluded from Usage-Pair Mining
+
+Usage-pair mining detects co-occurring function calls — "functions that call `A` also call `B`" — and flags deviations. Before this fix, built-in and standard library methods (`slice`, `trim`, `map`, `push`, `parse`, `stringify`, etc.) were treated as antecedents and consequents. Co-occurrence of universal methods is arithmetic, not convention: every function that calls `map` also calls `push` at some point, but that's not a meaningful project convention.
+
+**Fix**: A comprehensive exclusion set (~80 identifiers covering Array, String, Object, Math, JSON, Promise, Console, and timer methods) is filtered from both antecedent and consequent positions. Antecedents must also be project-defined symbols resolvable in the function index — a `functions`-table membership check gates every antecedent.
+
+**Threshold changes**: `pairConfidence` floor rises from 0.9 → 0.95 and `minCorpus` from 20 → 30. These are interim values, sweepable in the next recalibration pass.
+
+### R6: Evidence Bundle
+
+All six defect classes are covered by bench fixtures in `bench/corpus/`:
+- **styles**: `undefined-class`, `token-bypass`, `value-drift` fixtures with positive and near-miss files
+- **data-access/schema**: `no-sql-signal.ts` near-miss (JS identifiers as SQL), `aliased-queries.ts` near-miss (alias filtering)
+- **conventions**: all five rule domains (`usage-pair`, `import-form`, `error-handling`, `export-shape`, `naming`) at F1=1.0 with updated mining logic
+
+Every touched rule remains at `suggestion` severity. The hook path is byte-identical to v3.4.1 on hook-contract fixtures. Evidence bundle at `specs/evidence/spec-22/`.
+
+### R7: JSON-Purity Contamination Fix
+
+The `codeIndexDB.ts:1233` migration log path wrote to stdout via `console.log`. In `--json` mode, this contaminated the JSON output stream with non-JSON text, breaking downstream consumers that `JSON.parse()` the stdout. Switched to `console.error` (stderr) to keep migration notices off the JSON stream. Three purity tests added to `baseline.test.ts` for the hook-contract-critical paths: `changed --json`, `changed --stdin --json`, and zero-match edge case.
+
+### R8: isDynamic Extraction False Positives
+
+`extractClassUsage()` only marked template-literal dynamic expressions as unresolvable; simple variables and ternaries passed through. All `{…}` wrapped expressions are now `unresolvable: true`, and the detector skips per-entry, not per-file. The undefined-class detector no longer false-flags runtime class-name expressions.
+
+### R9: Line-Number Conversion Sweep
+
+**Root cause**: `toSourceLocation()` in `converter.ts` returned 0-based positions from tree-sitter without conversion, despite a comment saying "convert to 1-based columns." This created three divergent pipelines — callers compensated individually, some double-compensated, and raw TS node access bypassed the converter entirely. The sweep fixed 6 files at 6 edit locations:
+
+- **`converter.ts`**: Single conversion point — all four position fields (line/column, start/end) now `+ 1`
+- **`adapterBridge.ts`**: Removed internal `+ 1` compensation (now identity over `toSourceLocation()`)
+- **`UniversalAnalyzer.ts`**: Removed scattered `+ 1` compensation in `createViolation()`
+- **`astParser.ts`**: Removed `+ 1` compensation on parse error positions
+- **`componentScanner.ts`**: Removed DOUBLE compensation (was 2-based)
+- **`dependencyExtractor.ts`**: Removed DOUBLE compensation on call graph edges and usage records
+
+**Secondary effects**: Mixed-basis DB spans resolved (some records had 1-based start + 0-based end), churn attribution off-by-one resolved, `validateHookContract` guard behavior preserved.
+
+**Invariant**: All positions returned by `toSourceLocation()` are now 1-based. The single conversion point is mechanically enforced — zero `+ 1` compensations remain in the tree-sitter→adapter→consumer pipeline. Full sweep report at `specs/evidence/spec-22/line-number-sweep.md`.
+
+### R10: JSON Purity Test Expansion
+
+Extended JSON purity tests from 3 to 17, covering all major `--json` CLI commands: `index status`, `config rules-list`, `config profiles`, `config detection`, `search`, `tasks list`, `tasks from-audit`, `hotspots`, `ledger stats`, `ledger list`, `risk`, `baseline`, `conventions list`, and `architecture`. Every test verifies `JSON.parse(stdout)` succeeds with zero non-JSON text.
+
+### R11: Hook-Path Diagnostic
+
+Traced a stale footer error to the published plugin's hook script (`hook-audit.sh` line 50: `2>&1`) — the hook re-merges stderr into stdout after the repo correctly separated them. The repo is fixed; the hook script fix ships with the next plugin version. Diagnostic at `specs/evidence/spec-22/verify-close.md`.
+
+### Changed Files
+
+| File | Change |
+|------|--------|
+| `src/languages/tree-sitter/converter.ts` | Add `+ 1` to all position fields; invariant JSDoc |
+| `src/languages/adapterBridge.ts` | Remove internal `+ 1` compensation |
+| `src/languages/UniversalAnalyzer.ts` | Remove scattered `+ 1` in `createViolation()` |
+| `src/utils/astParser.ts` | Remove `+ 1` on parse error positions |
+| `src/componentScanner.ts` | Remove double compensation (2-based → 1-based) |
+| `src/utils/dependencyExtractor.ts` | Remove double compensation on call graph edges |
+| `src/codeIndexDB.ts` | `console.log` → `console.error` for migration notices |
+| `src/__tests__/baseline.test.ts` | 14 new JSON purity tests (3→17 total) |
+
 ## [3.3.0] — 2026-07-20
 
 ### Spec-10: Style Intelligence — Distribution-Aware Style Analysis

package/dist/analyzers/crossDomain/CrossDomainAnalyzer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CrossDomainAnalyzer.d.ts","sourceRoot":"","sources":["../../../src/analyzers/crossDomain/CrossDomainAnalyzer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAIH,OAAO,KAAK,EAAE,cAAc,EAAoD,MAAM,gBAAgB,CAAC;AACvG,OAAO,EAAE,iBAAiB,EAAE,MAAM,sCAAsC,CAAC;AAiCzE,qBAAa,mBAAoB,SAAQ,iBAAiB;IACxD,QAAQ,CAAC,IAAI,kBAAkB;IAC/B,QAAQ,CAAC,WAAW,sFACiE;IACrF,QAAQ,CAAC,QAAQ,kBAAkB;IAEnC;;;;OAIG;IACG,OAAO,CACX,KAAK,EAAE,MAAM,EAAE,EACf,MAAM,GAAE,GAAQ,EAChB,OAAO,GAAE,GAAQ,GAChB,OAAO,CAAC,cAAc,CAAC,CAyEzB;IAED,yCAAyC;IACnC,UAAU,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAEjC;IAID;;;OAGG;IACH,OAAO,CAAC,sBAAsB;IA0C9B;;;;OAIG;IACH,OAAO,CAAC,sBAAsB;IAyC9B;;;;;;;OAOG;IACH,OAAO,CAAC,6BAA6B;IA+GrC;;;;;;;;;OASG;IACH,OAAO,CAAC,sBAAsB;IAwL9B;;;;;;;;OAQG;IACH,OAAO,CAAC,mBAAmB;IAwL3B;;;OAGG;IACH,OAAO,CAAC,mBAAmB;CA2C5B"}
+{"version":3,"file":"CrossDomainAnalyzer.d.ts","sourceRoot":"","sources":["../../../src/analyzers/crossDomain/CrossDomainAnalyzer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;GAoBG;AAIH,OAAO,KAAK,EAAE,cAAc,EAAoD,MAAM,gBAAgB,CAAC;AACvG,OAAO,EAAE,iBAAiB,EAAE,MAAM,sCAAsC,CAAC;AA0BzE,qBAAa,mBAAoB,SAAQ,iBAAiB;IACxD,QAAQ,CAAC,IAAI,kBAAkB;IAC/B,QAAQ,CAAC,WAAW,sFACiE;IACrF,QAAQ,CAAC,QAAQ,kBAAkB;IAEnC;;;;OAIG;IACG,OAAO,CACX,KAAK,EAAE,MAAM,EAAE,EACf,MAAM,GAAE,GAAQ,EAChB,OAAO,GAAE,GAAQ,GAChB,OAAO,CAAC,cAAc,CAAC,CA0EzB;IAED,yCAAyC;IACnC,UAAU,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAEjC;IAID;;;OAGG;IACH,OAAO,CAAC,sBAAsB;IA0C9B;;;;OAIG;IACH,OAAO,CAAC,sBAAsB;IAyC9B;;;;;;;OAOG;IACH,OAAO,CAAC,6BAA6B;IAuJrC;;;;;;;;;OASG;IACH,OAAO,CAAC,sBAAsB;IAwL9B;;;;;;;;OAQG;IACH,OAAO,CAAC,mBAAmB;IAwL3B;;;OAGG;IACH,OAAO,CAAC,mBAAmB;CA2C5B"}

package/dist/analyzers/crossDomain/CrossDomainAnalyzer.js

@@ -66,8 +66,9 @@ export class CrossDomainAnalyzer extends UniversalAnalyzer {
         // is shared across tests, so schema_usage entries from previous test
         // cases leak into subsequent queries. Filter to the current project root.
         const projectRoot = config.projectRoot;
-        const filePathClause = projectRoot
-            ? { prefix: projectRoot, clause: 'AND file_path LIKE ?', param: `${projectRoot}%` }
+        const resolvedRoot = projectRoot ? path.resolve(projectRoot) : undefined;
+        const filePathClause = resolvedRoot
+            ? { prefix: resolvedRoot, clause: 'AND file_path LIKE ?', param: `${resolvedRoot}%` }
             : undefined;
         // R1 — Schema lifecycle detectors
         const lifecycle = config.schemaLifecycle ?? {};
@@ -194,20 +195,20 @@ export class CrossDomainAnalyzer extends UniversalAnalyzer {
      */
     detectTransactionBoundaryRisk(rawDb, txnTableMax, filePath) {
         const violations = [];
-        const fpSu = filePath ? `su.${filePath.clause.slice(4)}` : ''; // "AND file_path LIKE ?" → "AND su.file_path LIKE ?"
-        const fpSuClause = filePath ? `AND su.file_path LIKE ?` : '';
-        // Find all functions that perform writes, joined to functions table for
-        // the function ID needed by graph_cache lookups.
+        const fpWhere = filePath ? filePath.clause : '';
+        const fpParams = filePath ? [filePath.param] : [];
+        // ── 1. Group writes by (function_name, file_path) — no JOIN on functions.
+        //    The functions table is only populated during deepSync (code-audit index
+        //    sync), not during normal audit. We query schema_usage directly so this
+        //    detector works in both modes.
         const writerRows = rawDb
-            .prepare(`SELECT DISTINCT su.function_name, su.file_path, su.table_name, su.line,
-                f.id as function_id
+            .prepare(`SELECT su.function_name, su.file_path, su.table_name, MIN(su.line) as line
          FROM schema_usage su
-         JOIN functions f ON f.name = su.function_name
-                          AND f.file_path = su.file_path
          WHERE su.usage_type IN ('insert', 'update', 'delete', 'create')
-         ${fpSuClause}
+         ${fpWhere}
+         GROUP BY su.function_name, su.file_path, su.table_name
          ORDER BY su.function_name, su.file_path`)
-            .all(...(filePath ? [filePath.param] : []));
+            .all(...fpParams);
         if (writerRows.length === 0)
             return violations;
         const funcWrites = new Map();
@@ -221,34 +222,66 @@ export class CrossDomainAnalyzer extends UniversalAnalyzer {
                 funcWrites.set(key, {
                     filePath: row.file_path,
                     line: row.line,
-                    functionId: row.function_id,
                     tables: new Set([row.table_name]),
                 });
             }
         }
-        // For each writing function, expand to depth-1 callees via graph_cache
-        // and union their written tables.
+        // ── 2. Attempt callee expansion via graph_cache when the infrastructure
+        //    is populated (requires code-audit index sync). When the functions or
+        //    graph_cache tables are empty/missing, we fall back to reporting on
+        //    direct writes only — the basic signal is still useful without the
+        //    call-graph context.
+        const hasGraphData = (() => {
+            try {
+                const cnt = rawDb.prepare("SELECT COUNT(*) AS n FROM graph_cache WHERE graph_type = 'call'").get();
+                return (cnt?.n ?? 0) > 0;
+            }
+            catch {
+                return false;
+            }
+        })();
+        // Build a lookup of function IDs from the functions table (only if it
+        // has data — i.e., deepSync has been run).
+        let fnIdLookup = null;
+        if (hasGraphData) {
+            try {
+                const fnRows = rawDb.prepare('SELECT id, name, file_path FROM functions').all();
+                if (fnRows.length > 0) {
+                    fnIdLookup = new Map();
+                    for (const r of fnRows) {
+                        fnIdLookup.set(`${r.file_path}::${r.name}`, r.id);
+                    }
+                }
+            }
+            catch {
+                // functions table might not exist or be unpopulated
+            }
+        }
         for (const [key, funcData] of funcWrites) {
             const allTables = new Set(funcData.tables);
-            // Depth-1 callees: graph_cache stores node_key=caller_function_id,
-            // neighbor_key=callee_function_id for graph_type='call'.
-            const calleeRows = rawDb
-                .prepare(`SELECT neighbor_key FROM graph_cache
-           WHERE graph_type = 'call' AND node_key = ?`)
-                .all(String(funcData.functionId));
-            for (const callee of calleeRows) {
-                // Get callee function details and their written tables
-                const calleeFuncs = rawDb
-                    .prepare(`SELECT name, file_path FROM functions WHERE id = ?`)
-                    .all(parseInt(callee.neighbor_key, 10));
-                for (const cf of calleeFuncs) {
-                    const calleeTables = rawDb
-                        .prepare(`SELECT DISTINCT table_name FROM schema_usage
-               WHERE usage_type IN ('insert', 'update', 'delete', 'create')
-                 AND function_name = ? AND file_path = ?`)
-                        .all(cf.name, cf.file_path);
-                    for (const ct of calleeTables) {
-                        allTables.add(ct.table_name);
+            // Depth-1 callee expansion: only when graph_cache and functions tables
+            // are both populated. Without deepSync, this is skipped gracefully.
+            if (fnIdLookup && hasGraphData) {
+                const funcId = fnIdLookup.get(key);
+                if (funcId !== undefined) {
+                    const calleeRows = rawDb
+                        .prepare(`SELECT neighbor_key FROM graph_cache
+               WHERE graph_type = 'call' AND node_key = ?`)
+                        .all(String(funcId));
+                    for (const callee of calleeRows) {
+                        const calleeFuncs = rawDb
+                            .prepare(`SELECT name, file_path FROM functions WHERE id = ?`)
+                            .all(parseInt(callee.neighbor_key, 10));
+                        for (const cf of calleeFuncs) {
+                            const calleeTables = rawDb
+                                .prepare(`SELECT DISTINCT table_name FROM schema_usage
+                   WHERE usage_type IN ('insert', 'update', 'delete', 'create')
+                     AND function_name = ? AND file_path = ?`)
+                                .all(cf.name, cf.file_path);
+                            for (const ct of calleeTables) {
+                                allTables.add(ct.table_name);
+                            }
+                        }
                     }
                 }
             }
@@ -451,7 +484,7 @@ export class CrossDomainAnalyzer extends UniversalAnalyzer {
             for (const fn of untested) {
                 violations.push({
                     file: fn.filePath,
-                    line: 0, // Risk-based finding; no single line anchors this
+                    line: fn.lineNumber ?? 1,
                     column: 0,
                     severity: 'suggestion',
                     message: `Exported function '${fn.functionName}' (risk ${fn.riskScore.toFixed(3)}) has no measured test coverage. ` +

package/dist/analyzers/crossDomain/CrossDomainAnalyzer.js.map

@@ -1 +1 @@
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package/dist/analyzers/orm/drizzleAdapter.d.ts

@@ -14,12 +14,27 @@ export declare class DrizzleAdapter implements OrmAdapter {
     readonly fileExtensions: string[];
     supportsFile(filePath: string): boolean;
     extractTableReferences(ast: AST, adapter: LanguageAdapter, sourceCode: string): OrmTableReference[];
+    /**
+     * Spec 22 R4.2: Check whether the file imports from drizzle-orm.
+     *
+     * Scans import statement text for "drizzle-orm" — faster and more
+     * reliable than AST traversal across language adapters.
+     */
+    private fileImportsDrizzleOrm;
     /**
      * Try to extract a table reference from a Drizzle query chain.
      *
      * Pattern: db.select().from(users)  or  db.insert(users).values(...)
      * The table identifier is the argument to .from(), or the argument to
      * insert()/update()/delete() when they take a table directly.
+     *
+     * Spec 22 R4.2: Each pattern requires companion Drizzle methods in the
+     * same expression to avoid matching generic .from()/.insert()/.delete()
+     * calls (e.g. Array.from(map), .insert(record), .delete(id)).
+     * - .from(identifier) requires .select() in the expression
+     * - .insert(identifier) requires .values() in the expression
+     * - .update(identifier) already requires .set() — no change needed
+     * - .delete(identifier) requires .where() in the expression
      */
     private extractQueryTable;
     extractSchemaDefinitions(ast: AST, adapter: LanguageAdapter, sourceCode: string): OrmSchemaDefinition[];

package/dist/analyzers/orm/drizzleAdapter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"drizzleAdapter.d.ts","sourceRoot":"","sources":["../../../src/analyzers/orm/drizzleAdapter.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AACrF,OAAO,KAAK,EAAE,GAAG,EAAW,eAAe,EAAE,MAAM,0BAA0B,CAAC;AA2B9E,qBAAa,cAAe,YAAW,UAAU;IAC/C,QAAQ,CAAC,IAAI,aAAa;IAC1B,QAAQ,CAAC,cAAc,WAAkC;IAEzD,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAGtC;IAID,sBAAsB,CACpB,GAAG,EAAE,GAAG,EACR,OAAO,EAAE,eAAe,EACxB,UAAU,EAAE,MAAM,GACjB,iBAAiB,EAAE,CAWrB;IAED;;;;;;OAMG;IACH,OAAO,CAAC,iBAAiB;IAwDzB,wBAAwB,CACtB,GAAG,EAAE,GAAG,EACR,OAAO,EAAE,eAAe,EACxB,UAAU,EAAE,MAAM,GACjB,mBAAmB,EAAE,CAWvB;IAED;;;;;;OAMG;IACH,OAAO,CAAC,sBAAsB;IAyB9B;;;;;OAKG;IACH,OAAO,CAAC,sBAAsB;CA6B/B"}
+{"version":3,"file":"drizzleAdapter.d.ts","sourceRoot":"","sources":["../../../src/analyzers/orm/drizzleAdapter.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AACrF,OAAO,KAAK,EAAE,GAAG,EAAW,eAAe,EAAE,MAAM,0BAA0B,CAAC;AA2B9E,qBAAa,cAAe,YAAW,UAAU;IAC/C,QAAQ,CAAC,IAAI,aAAa;IAC1B,QAAQ,CAAC,cAAc,WAAkC;IAEzD,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAGtC;IAID,sBAAsB,CACpB,GAAG,EAAE,GAAG,EACR,OAAO,EAAE,eAAe,EACxB,UAAU,EAAE,MAAM,GACjB,iBAAiB,EAAE,CAkBrB;IAED;;;;;OAKG;IACH,OAAO,CAAC,qBAAqB;IAa7B;;;;;;;;;;;;;;OAcG;IACH,OAAO,CAAC,iBAAiB;IA4DzB,wBAAwB,CACtB,GAAG,EAAE,GAAG,EACR,OAAO,EAAE,eAAe,EACxB,UAAU,EAAE,MAAM,GACjB,mBAAmB,EAAE,CAWvB;IAED;;;;;;OAMG;IACH,OAAO,CAAC,sBAAsB;IAyB9B;;;;;OAKG;IACH,OAAO,CAAC,sBAAsB;CA6B/B"}

package/dist/analyzers/orm/drizzleAdapter.js

@@ -36,6 +36,12 @@ export class DrizzleAdapter {
     }
     // ── Table references from query operations ──────────────────────────────
     extractTableReferences(ast, adapter, sourceCode) {
+        // Spec 22 R4.2: File-level gate — only scan files that import drizzle-orm.
+        // Prevents false positives from generic .from()/.insert()/.delete() calls
+        // in non-Drizzle files (e.g. Array.from(map) → map flagged as a table).
+        if (!this.fileImportsDrizzleOrm(ast, adapter, sourceCode)) {
+            return [];
+        }
         const references = [];
         // Find all call_expression nodes
         const calls = adapter.findNodes(ast, { type: 'call_expression' });
@@ -46,18 +52,42 @@ export class DrizzleAdapter {
         }
         return references;
     }
+    /**
+     * Spec 22 R4.2: Check whether the file imports from drizzle-orm.
+     *
+     * Scans import statement text for "drizzle-orm" — faster and more
+     * reliable than AST traversal across language adapters.
+     */
+    fileImportsDrizzleOrm(ast, adapter, sourceCode) {
+        const importNodes = adapter.findNodes(ast, { type: 'import_statement' });
+        for (const node of importNodes) {
+            const text = adapter.getNodeText(node, sourceCode);
+            if (text.includes('drizzle-orm'))
+                return true;
+        }
+        return false;
+    }
     /**
      * Try to extract a table reference from a Drizzle query chain.
      *
      * Pattern: db.select().from(users)  or  db.insert(users).values(...)
      * The table identifier is the argument to .from(), or the argument to
      * insert()/update()/delete() when they take a table directly.
+     *
+     * Spec 22 R4.2: Each pattern requires companion Drizzle methods in the
+     * same expression to avoid matching generic .from()/.insert()/.delete()
+     * calls (e.g. Array.from(map), .insert(record), .delete(id)).
+     * - .from(identifier) requires .select() in the expression
+     * - .insert(identifier) requires .values() in the expression
+     * - .update(identifier) already requires .set() — no change needed
+     * - .delete(identifier) requires .where() in the expression
      */
     extractQueryTable(node, adapter, sourceCode) {
         const text = adapter.getNodeText(node, sourceCode);
         // db.select().from(tableName)
+        // Spec 22 R4.2: Require .select() companion — prevents Array.from(map) false positives.
         const fromMatch = text.match(/\.from\s*\(\s*(\w+)\s*\)/);
-        if (fromMatch) {
+        if (fromMatch && /\.select\s*\(/.test(text)) {
             return {
                 table: fromMatch[1],
                 type: 'select',
@@ -66,6 +96,7 @@ export class DrizzleAdapter {
             };
         }
         // db.insert(tableName).values(...)  → insert
+        // Spec 22 R4.2: Requires .values() companion — prevents generic .insert(record) false positives.
         const insertMatch = text.match(/\.insert\s*\(\s*(\w+)\s*\)/);
         if (insertMatch && /\.values\s*\(/.test(text)) {
             return {
@@ -76,6 +107,7 @@ export class DrizzleAdapter {
             };
         }
         // db.update(tableName).set(...)  → update
+        // Already gated by .set() — no Spec 22 change needed.
         const updateMatch = text.match(/\.update\s*\(\s*(\w+)\s*\)/);
         if (updateMatch && /\.set\s*\(/.test(text)) {
             return {
@@ -86,8 +118,9 @@ export class DrizzleAdapter {
             };
         }
         // db.delete(tableName).where(...)  → delete
+        // Spec 22 R4.2: Require .where() companion — prevents generic .delete(id) false positives.
         const deleteMatch = text.match(/\.delete\s*\(\s*(\w+)\s*\)/);
-        if (deleteMatch) {
+        if (deleteMatch && /\.where\s*\(/.test(text)) {
             return {
                 table: deleteMatch[1],
                 type: 'delete',

package/dist/analyzers/orm/drizzleAdapter.js.map

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package/dist/analyzers/universal/UniversalConventionsAnalyzer.d.ts.map

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