cod-dicomweb-server 1.3.9 → 1.3.10

package/dist/esm/dataRetrieval/scripts/filePartial.js

@@ -8,7 +8,7 @@ const filePartial = {
         }
         const storageName = createPartialFileName(url, offsets);
         if (directoryHandle) {
-            const file = await readFile(directoryHandle, storageName, offsets);
+            const file = (await readFile(directoryHandle, storageName, { offsets, isJson: false }));
             if (file) {
                 callBack({ url, fileArraybuffer: new Uint8Array(file), offsets });
                 return;

package/dist/esm/dataRetrieval/scripts/fileStreaming.js

@@ -21,7 +21,7 @@ const fileStreaming = {
         try {
             const fileName = createStreamingFileName(url);
             if (directoryHandle) {
-                const file = await readFile(directoryHandle, fileName);
+                const file = (await readFile(directoryHandle, fileName, { isJson: false }));
                 if (file) {
                     callBack({ url, position: file.byteLength, fileArraybuffer: new Uint8Array(file) });
                     return;

package/dist/esm/fileAccessSystemUtils.d.ts

@@ -1,13 +1,19 @@
+import { JsonMetadata } from './types';
 export declare function getDirectoryHandle(): Promise<FileSystemDirectoryHandle>;
-export declare function readFile(directoryHandle: FileSystemDirectoryHandle, name: string, offsets?: {
-    startByte: number;
-    endByte: number;
-}): Promise<ArrayBuffer>;
-export declare function writeFile(directoryHandle: FileSystemDirectoryHandle, name: string, file: ArrayBuffer): Promise<void>;
+export declare function readFile(directoryHandle: FileSystemDirectoryHandle, name: string, options?: {
+    isJson?: boolean;
+    offsets?: {
+        startByte: number;
+        endByte: number;
+    };
+}): Promise<ArrayBuffer | JsonMetadata>;
+export declare function writeFile(directoryHandle: FileSystemDirectoryHandle, name: string, file: ArrayBuffer | JsonMetadata, isJson?: boolean): Promise<void>;
 export declare function download(fileName: string, file: ArrayBuffer): boolean;
 export declare function clearPartialFiles(): Promise<void>;
+export declare function parseCachePath(url: string): string;
 export declare function createStreamingFileName(url: string): string;
 export declare function createPartialFileName(url: string, offsets?: {
     startByte: number;
     endByte: number;
 }): string;
+export declare function createMetadataFileName(url: string): string;

package/dist/esm/fileAccessSystemUtils.js

@@ -15,51 +15,77 @@ export async function getDirectoryHandle() {
         console.warn(`Error getting directoryhandle: ${error.message}`);
     }
 }
-export async function readFile(directoryHandle, name, offsets) {
+async function readJsonFile(directoryHandle, name) {
+    return await directoryHandle
+        .getFileHandle(name)
+        .then((fileHandle) => fileHandle
+        .getFile()
+        .then((file) => file.text())
+        .then((metadataString) => JSON.parse(metadataString)))
+        .catch(() => null);
+}
+async function readArrayBufferFile(directoryHandle, name) {
+    return await directoryHandle
+        .getFileHandle(name)
+        .then((fileHandle) => fileHandle.getFile().then((file) => file.arrayBuffer()))
+        .catch(() => null);
+}
+export async function readFile(directoryHandle, name, options = {}) {
     if (!name) {
         return;
     }
-    let pathParts = name.split('/');
+    const pathParts = name.split('/');
     let currentDir = directoryHandle;
     try {
         for (let i = 0; i < pathParts.length - 1; i++) {
-            currentDir = await currentDir.getDirectoryHandle(pathParts[i]);
+            currentDir = await currentDir.getDirectoryHandle(pathParts[i], { create: true });
         }
         const fileName = pathParts.at(-1);
-        const fileHandle = await currentDir.getFileHandle(fileName);
-        return await fileHandle.getFile().then((file) => file.arrayBuffer());
+        if (options.isJson) {
+            return readJsonFile(currentDir, fileName);
+        }
+        else {
+            return readArrayBufferFile(currentDir, fileName).catch(async () => {
+                console.warn(`Error reading the file ${name} from partial folder, trying from full file`);
+                if (options.offsets && pathParts.includes(FILE_SYSTEM_ROUTES.Partial)) {
+                    try {
+                        pathParts.splice(pathParts.findIndex((part) => part === FILE_SYSTEM_ROUTES.Partial), 1);
+                        currentDir = directoryHandle;
+                        for (let i = 0; i < pathParts.length - 1; i++) {
+                            currentDir = await currentDir.getDirectoryHandle(pathParts[i], { create: true });
+                        }
+                        const convertedFileName = pathParts.at(-1).split('_')[0] + '.tar';
+                        const fileArraybuffer = await readArrayBufferFile(currentDir, convertedFileName);
+                        return fileArraybuffer.slice(options.offsets.startByte, options.offsets.endByte);
+                    }
+                    catch (error) {
+                        console.warn(`Error reading the file ${name}: ${error.message}`);
+                    }
+                }
+            });
+        }
     }
     catch (error) {
         console.warn(`Error reading the file ${name}: ${error.message}`);
-        if (offsets && pathParts[0] === FILE_SYSTEM_ROUTES.Partial) {
-            try {
-                const seriesInstanceUID = pathParts.at(-1).slice(0, name.lastIndexOf('.')).split('_')[0];
-                pathParts = pathParts.slice(1);
-                for (let i = 0; i < pathParts.length - 1; i++) {
-                    currentDir = await currentDir.getDirectoryHandle(pathParts[i]);
-                }
-                const fileHandle = await directoryHandle.getFileHandle(seriesInstanceUID + '.tar');
-                const fileArraybuffer = await fileHandle.getFile().then((file) => file.arrayBuffer());
-                return fileArraybuffer.slice(offsets.startByte, offsets.endByte);
-            }
-            catch (error) {
-                console.warn(`Error reading the file ${name}: ${error.message}`);
-            }
-        }
     }
 }
-export async function writeFile(directoryHandle, name, file) {
+export async function writeFile(directoryHandle, name, file, isJson = false) {
     try {
         const pathParts = name.split('/');
         let currentDir = directoryHandle;
         for (let i = 0; i < pathParts.length - 1; i++) {
             currentDir = await currentDir.getDirectoryHandle(pathParts[i], { create: true });
         }
-        const fileName = pathParts[pathParts.length - 1];
+        const fileName = pathParts.at(-1);
         const fileHandle = await currentDir.getFileHandle(fileName, { create: true });
         // @ts-ignore
         const fileWritable = await fileHandle.createWritable();
-        await fileWritable.write(file);
+        if (isJson) {
+            await fileWritable.write(JSON.stringify(file));
+        }
+        else {
+            await fileWritable.write(file);
+        }
         await fileWritable.close();
     }
     catch (error) {
@@ -83,18 +109,41 @@ export function download(fileName, file) {
     }
 }
 export async function clearPartialFiles() {
+    const removePartialFolder = async (dirHandle) => {
+        // @ts-ignore
+        for await (const [name, handle] of dirHandle.entries()) {
+            if (handle.kind === 'directory') {
+                if (name.toLowerCase() === FILE_SYSTEM_ROUTES.Partial) {
+                    await dirHandle.removeEntry(name, { recursive: true }).catch((e) => console.warn(`Failed to remove ${name}:`, e));
+                }
+                else {
+                    // Recurse into other directories
+                    await removePartialFolder(handle);
+                }
+            }
+        }
+    };
     try {
-        await directoryHandle.removeEntry(FILE_SYSTEM_ROUTES.Partial, { recursive: true });
+        await removePartialFolder(directoryHandle);
     }
     catch (error) {
         console.warn(`Error clearing partial files: ${error.message}`);
     }
 }
+export function parseCachePath(url) {
+    const urlObj = new URL(url);
+    const bucketPath = urlObj.pathname.match(/\/(.*?)\/studies/)[1];
+    const [studyInstanceUID, _, seriesInstanceUID] = urlObj.pathname.match(/studies\/(.*?)(\.tar|\/metadata.json)/)[1].split('/');
+    return `${bucketPath}/${studyInstanceUID}/${seriesInstanceUID}`;
+}
 export function createStreamingFileName(url) {
-    return url.split('series/')[1];
+    return `${parseCachePath(url)}/${url.split('series/')[1]}`;
 }
 export function createPartialFileName(url, offsets) {
-    const seriesInstanceUID = url.split('series/')[1].split('.tar')[0];
+    const seriesInstanceUID = url.match(/series\/(.*?).tar/)[1];
     const offsetPart = `${offsets ? `_${offsets?.startByte}_${offsets?.endByte}` : ''}`;
-    return `${FILE_SYSTEM_ROUTES.Partial}/${seriesInstanceUID}${offsetPart}.dcm`;
+    return `${parseCachePath(url)}/${FILE_SYSTEM_ROUTES.Partial}/${seriesInstanceUID}${offsetPart}.dcm`;
+}
+export function createMetadataFileName(url) {
+    return `${parseCachePath(url)}/metadata.json`;
 }

package/dist/esm/metadataManager.js

@@ -1,5 +1,6 @@
 import { CustomError } from './classes/customClasses';
 import { createMetadataJsonUrl } from './classes/utils';
+import { createMetadataFileName, getDirectoryHandle, readFile, writeFile } from './fileAccessSystemUtils';
 class MetadataManager {
     metadataPromises = {};
     constructor() { }
@@ -29,6 +30,12 @@ class MetadataManager {
         if (cachedMetadata) {
             return await cachedMetadata;
         }
+        const directoryHandle = await getDirectoryHandle();
+        const fileName = createMetadataFileName(url);
+        const locallyCachedMetadata = (await readFile(directoryHandle, fileName, { isJson: true }));
+        if (locallyCachedMetadata) {
+            return locallyCachedMetadata;
+        }
         try {
             this.metadataPromises[url] = fetch(url, { headers })
                 .then((response) => {
@@ -39,7 +46,7 @@ class MetadataManager {
             })
                 .then((data) => {
                 this.addDeidMetadata(data, url);
-                return data;
+                return writeFile(directoryHandle, fileName, data, true).then(() => data);
             });
             return await this.metadataPromises[url];
         }

package/dist/umd/563.js

@@ -1,6 +1,6 @@
 /*!
  * 
- * cod-dicomweb-server v1.3.9
+ * cod-dicomweb-server v1.3.10
  * git+https://github.com/gradienthealth/cod-dicomweb-server.git
  *
  *   Copyright (c) Adithyan Dinesh and project contributors.
@@ -15,5 +15,5 @@
  * Copyright 2019 Google LLC
  * SPDX-License-Identifier: Apache-2.0
  */
-const t=Symbol("Comlink.proxy"),e=Symbol("Comlink.endpoint"),r=Symbol("Comlink.releaseProxy"),n=Symbol("Comlink.finalizer"),o=Symbol("Comlink.thrown"),i=t=>"object"==typeof t&&null!==t||"function"==typeof t,a={canHandle:e=>i(e)&&e[t],serialize(t){const{port1:e,port2:r}=new MessageChannel;return u(t,e),[r,[r]]},deserialize:t=>(t.start(),function(t,e){const r=new Map;return t.addEventListener("message",(function(t){const{data:e}=t;if(!e||!e.id)return;const n=r.get(e.id);if(n)try{n(e)}finally{r.delete(e.id)}})),y(t,r,[],e)}(t))},c=new Map([["proxy",a],["throw",{canHandle:t=>i(t)&&o in t,serialize({value:t}){let e;return e=t instanceof Error?{isError:!0,value:{message:t.message,name:t.name,stack:t.stack}}:{isError:!1,value:t},[e,[]]},deserialize(t){if(t.isError)throw Object.assign(new Error(t.value.message),t.value);throw t.value}}]]);function u(e,r=globalThis,i=["*"]){r.addEventListener("message",(function a(c){if(!c||!c.data)return;if(!function(t,e){for(const r of 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