cod-dicomweb-server 1.3.4 → 1.3.6

package/dist/umd/846.js

@@ -0,0 +1,19 @@
+/*!
+ * 
+ * cod-dicomweb-server v1.3.4
+ * git+https://github.com/gradienthealth/cod-dicomweb-server.git
+ *
+ *   Copyright (c) Adithyan Dinesh and project contributors.
+ *
+ *   This source code is licensed under the MIT license found in the
+ *   LICENSE file in the root directory of this source tree.
+ *
+ */
+!function(t,e){if("object"==typeof exports&&"object"==typeof module)module.exports=e();else if("function"==typeof define&&define.amd)define([],e);else{var r=e();for(var n in r)("object"==typeof exports?exports:t)[n]=r[n]}}(self,(()=>(()=>{"use strict";
+/**
+ * @license
+ * Copyright 2019 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
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         }\n                    break;\n                case \"CONSTRUCT\" /* MessageType.CONSTRUCT */:\n                    {\n                        const value = new rawValue(...argumentList);\n                        returnValue = proxy(value);\n                    }\n                    break;\n                case \"ENDPOINT\" /* MessageType.ENDPOINT */:\n                    {\n                        const { port1, port2 } = new MessageChannel();\n                        expose(obj, port2);\n                        returnValue = transfer(port1, [port1]);\n                    }\n                    break;\n                case \"RELEASE\" /* MessageType.RELEASE */:\n                    {\n                        returnValue = undefined;\n                    }\n                    break;\n                default:\n                    return;\n            }\n        }\n        catch (value) {\n            returnValue = { value, [throwMarker]: 0 };\n        }\n        Promise.resolve(returnValue)\n            .catch((value) => {\n            return { value, [throwMarker]: 0 };\n        })\n            .then((returnValue) => {\n            const [wireValue, transferables] = toWireValue(returnValue);\n            ep.postMessage(Object.assign(Object.assign({}, wireValue), { id }), transferables);\n            if (type === \"RELEASE\" /* MessageType.RELEASE */) {\n                // detach and deactive after sending release response above.\n                ep.removeEventListener(\"message\", callback);\n                closeEndPoint(ep);\n                if (finalizer in obj && typeof obj[finalizer] === \"function\") {\n                    obj[finalizer]();\n                }\n            }\n        })\n            .catch((error) => {\n            // Send Serialization Error To Caller\n            const [wireValue, transferables] = toWireValue({\n                value: new TypeError(\"Unserializable return value\"),\n                [throwMarker]: 0,\n            });\n            ep.postMessage(Object.assign(Object.assign({}, wireValue), { id }), transferables);\n        });\n    });\n    if (ep.start) {\n        ep.start();\n    }\n}\nfunction isMessagePort(endpoint) {\n    return endpoint.constructor.name === \"MessagePort\";\n}\nfunction closeEndPoint(endpoint) {\n    if (isMessagePort(endpoint))\n        endpoint.close();\n}\nfunction wrap(ep, target) {\n    const pendingListeners = new Map();\n    ep.addEventListener(\"message\", function handleMessage(ev) {\n        const { data } = ev;\n        if (!data || !data.id) {\n            return;\n        }\n        const resolver = pendingListeners.get(data.id);\n        if (!resolver) {\n            return;\n        }\n        try {\n            resolver(data);\n        }\n        finally {\n            pendingListeners.delete(data.id);\n        }\n    });\n    return createProxy(ep, pendingListeners, [], target);\n}\nfunction throwIfProxyReleased(isReleased) {\n    if (isReleased) {\n        throw new Error(\"Proxy has been released and is not useable\");\n    }\n}\nfunction releaseEndpoint(ep) {\n    return requestResponseMessage(ep, new Map(), {\n        type: \"RELEASE\" /* MessageType.RELEASE */,\n    }).then(() => {\n        closeEndPoint(ep);\n    });\n}\nconst proxyCounter = new WeakMap();\nconst proxyFinalizers = \"FinalizationRegistry\" in globalThis &&\n    new FinalizationRegistry((ep) => {\n        const newCount = (proxyCounter.get(ep) || 0) - 1;\n        proxyCounter.set(ep, newCount);\n        if (newCount === 0) {\n            releaseEndpoint(ep);\n        }\n    });\nfunction registerProxy(proxy, ep) {\n    const newCount = (proxyCounter.get(ep) || 0) + 1;\n    proxyCounter.set(ep, newCount);\n    if (proxyFinalizers) {\n        proxyFinalizers.register(proxy, ep, proxy);\n    }\n}\nfunction unregisterProxy(proxy) {\n    if (proxyFinalizers) {\n        proxyFinalizers.unregister(proxy);\n    }\n}\nfunction createProxy(ep, pendingListeners, path = [], target = function () { }) {\n    let isProxyReleased = false;\n    const proxy = new Proxy(target, {\n        get(_target, prop) {\n            throwIfProxyReleased(isProxyReleased);\n            if (prop === releaseProxy) {\n                return () => {\n                    unregisterProxy(proxy);\n                    releaseEndpoint(ep);\n                    pendingListeners.clear();\n                    isProxyReleased = true;\n                };\n            }\n            if (prop === \"then\") {\n                if (path.length === 0) {\n                    return { then: () => proxy };\n                }\n                const r = requestResponseMessage(ep, pendingListeners, {\n                    type: \"GET\" /* MessageType.GET */,\n                    path: path.map((p) => p.toString()),\n                }).then(fromWireValue);\n                return r.then.bind(r);\n            }\n            return createProxy(ep, pendingListeners, [...path, prop]);\n        },\n        set(_target, prop, rawValue) {\n            throwIfProxyReleased(isProxyReleased);\n            // FIXME: ES6 Proxy Handler `set` methods are supposed to return a\n            // boolean. To show good will, we return true asynchronously ¯\\_(ツ)_/¯\n            const [value, transferables] = toWireValue(rawValue);\n            return requestResponseMessage(ep, pendingListeners, {\n                type: \"SET\" /* MessageType.SET */,\n                path: [...path, prop].map((p) => p.toString()),\n                value,\n            }, transferables).then(fromWireValue);\n        },\n        apply(_target, _thisArg, rawArgumentList) {\n            throwIfProxyReleased(isProxyReleased);\n            const last = path[path.length - 1];\n            if (last === createEndpoint) {\n                return requestResponseMessage(ep, pendingListeners, {\n                    type: \"ENDPOINT\" /* MessageType.ENDPOINT */,\n                }).then(fromWireValue);\n            }\n            // We just pretend that `bind()` didn’t happen.\n            if (last === \"bind\") {\n                return createProxy(ep, pendingListeners, path.slice(0, -1));\n            }\n            const [argumentList, transferables] = processArguments(rawArgumentList);\n            return requestResponseMessage(ep, pendingListeners, {\n                type: \"APPLY\" /* MessageType.APPLY */,\n                path: path.map((p) => p.toString()),\n                argumentList,\n            }, transferables).then(fromWireValue);\n        },\n        construct(_target, rawArgumentList) {\n            throwIfProxyReleased(isProxyReleased);\n            const [argumentList, transferables] = processArguments(rawArgumentList);\n            return requestResponseMessage(ep, pendingListeners, {\n                type: \"CONSTRUCT\" /* MessageType.CONSTRUCT */,\n                path: path.map((p) => p.toString()),\n                argumentList,\n            }, transferables).then(fromWireValue);\n        },\n    });\n    registerProxy(proxy, ep);\n    return proxy;\n}\nfunction myFlat(arr) {\n    return Array.prototype.concat.apply([], arr);\n}\nfunction processArguments(argumentList) {\n    const processed = argumentList.map(toWireValue);\n    return [processed.map((v) => v[0]), myFlat(processed.map((v) => v[1]))];\n}\nconst transferCache = new WeakMap();\nfunction transfer(obj, transfers) {\n    transferCache.set(obj, transfers);\n    return obj;\n}\nfunction proxy(obj) {\n    return Object.assign(obj, { [proxyMarker]: true });\n}\nfunction windowEndpoint(w, context = globalThis, targetOrigin = \"*\") {\n    return {\n        postMessage: (msg, transferables) => w.postMessage(msg, targetOrigin, transferables),\n        addEventListener: context.addEventListener.bind(context),\n        removeEventListener: context.removeEventListener.bind(context),\n    };\n}\nfunction toWireValue(value) {\n    for (const [name, handler] of transferHandlers) {\n        if (handler.canHandle(value)) {\n            const [serializedValue, transferables] = handler.serialize(value);\n            return [\n                {\n                    type: \"HANDLER\" /* WireValueType.HANDLER */,\n                    name,\n                    value: serializedValue,\n                },\n                transferables,\n            ];\n        }\n    }\n    return [\n        {\n            type: \"RAW\" /* WireValueType.RAW */,\n            value,\n        },\n        transferCache.get(value) || [],\n    ];\n}\nfunction fromWireValue(value) {\n    switch (value.type) {\n        case \"HANDLER\" /* WireValueType.HANDLER */:\n            return transferHandlers.get(value.name).deserialize(value.value);\n        case \"RAW\" /* WireValueType.RAW */:\n            return value.value;\n    }\n}\nfunction requestResponseMessage(ep, pendingListeners, msg, transfers) {\n    return new Promise((resolve) => {\n        const id = generateUUID();\n        pendingListeners.set(id, resolve);\n        if (ep.start) {\n            ep.start();\n        }\n        ep.postMessage(Object.assign({ id }, msg), transfers);\n    });\n}\nfunction generateUUID() {\n    return new Array(4)\n        .fill(0)\n        .map(() => Math.floor(Math.random() * Number.MAX_SAFE_INTEGER).toString(16))\n        .join(\"-\");\n}\n\nexport { createEndpoint, expose, finalizer, proxy, proxyMarker, releaseProxy, transfer, transferHandlers, windowEndpoint, wrap };\n//# sourceMappingURL=comlink.mjs.map\n","export class CustomError extends Error {}\n\nexport class CustomErrorEvent extends Event {\n  error: CustomError;\n  message: string;\n\n  constructor(message: string, error: CustomError) {\n    super(message);\n    this.message = message;\n    this.error = error;\n  }\n}\n\nexport class CustomMessageEvent extends MessageEvent<{\n  url: string;\n  position: number;\n  chunk?: Uint8Array;\n  isAppending?: boolean;\n  fileArraybuffer?: Uint8Array;\n  offsets?: { startByte: number; endByte: number };\n}> {}\n","export const FILE_PARTIAL_WORKER_NAME = 'filePartial';\nexport const FILE_STREAMING_WORKER_NAME = 'fileStreaming';\n\nexport const THRESHOLD = 10000;\n\nexport const IDB_DIR_HANDLE_KEY = 'indexed_db_directory_handle_key';\n\nexport const FILE_SYSTEM_ROUTES = {\n  Partial: 'partial'\n};\n","import { get } from 'idb-keyval';\nimport { FILE_SYSTEM_ROUTES, IDB_DIR_HANDLE_KEY } from './constants/dataRetrieval';\n\nlet directoryHandle: FileSystemDirectoryHandle;\n\nexport async function getDirectoryHandle(): Promise<FileSystemDirectoryHandle> {\n  try {\n    if (!directoryHandle) {\n      directoryHandle = (await get(IDB_DIR_HANDLE_KEY)) as FileSystemDirectoryHandle;\n    }\n\n    if (!directoryHandle) {\n      directoryHandle = await navigator.storage.getDirectory();\n    }\n\n    return directoryHandle;\n  } catch (error) {\n    console.warn(`Error getting directoryhandle: ${error.message}`);\n  }\n}\n\nexport async function readFile(\n  directoryHandle: FileSystemDirectoryHandle,\n  name: string,\n  offsets?: { startByte: number; endByte: number }\n): Promise<ArrayBuffer> {\n  if (!name) {\n    return;\n  }\n\n  let pathParts = name.split('/');\n  let currentDir = directoryHandle;\n\n  try {\n    for (let i = 0; i < pathParts.length - 1; i++) {\n      currentDir = await currentDir.getDirectoryHandle(pathParts[i]);\n    }\n\n    const fileName = pathParts.at(-1);\n    const fileHandle = await currentDir.getFileHandle(fileName);\n    return await fileHandle.getFile().then((file) => file.arrayBuffer());\n  } catch (error) {\n    console.warn(`Error reading the file ${name}: ${error.message}`);\n\n    if (offsets && pathParts[0] === FILE_SYSTEM_ROUTES.Partial) {\n      try {\n        const seriesInstanceUID = pathParts.at(-1).slice(0, name.lastIndexOf('.')).split('_')[0];\n        pathParts = pathParts.slice(1);\n\n        for (let i = 0; i < pathParts.length - 1; i++) {\n          currentDir = await currentDir.getDirectoryHandle(pathParts[i]);\n        }\n\n        const fileHandle = await directoryHandle.getFileHandle(seriesInstanceUID + '.tar');\n        const fileArraybuffer = await fileHandle.getFile().then((file) => file.arrayBuffer());\n        return fileArraybuffer.slice(offsets.startByte, offsets.endByte);\n      } catch (error) {\n        console.warn(`Error reading the file ${name}: ${error.message}`);\n      }\n    }\n  }\n}\n\nexport async function writeFile(directoryHandle: FileSystemDirectoryHandle, name: string, file: ArrayBuffer): Promise<void> {\n  try {\n    const pathParts = name.split('/');\n    let currentDir = directoryHandle;\n\n    for (let i = 0; i < pathParts.length - 1; i++) {\n      currentDir = await currentDir.getDirectoryHandle(pathParts[i], { create: true });\n    }\n\n    const fileName = pathParts[pathParts.length - 1];\n    const fileHandle = await currentDir.getFileHandle(fileName, { create: true });\n    // @ts-ignore\n    const fileWritable = await fileHandle.createWritable();\n    await fileWritable.write(file);\n    await fileWritable.close();\n  } catch (error) {\n    console.warn(`Error writing the file ${name}: ${error.message}`);\n  }\n}\n\nexport async function clearPartialFiles(): Promise<void> {\n  try {\n    await directoryHandle.removeEntry(FILE_SYSTEM_ROUTES.Partial, { recursive: true });\n  } catch (error) {\n    console.warn(`Error clearing partial files: ${error.message}`);\n  }\n}\n\nexport function createStreamingFileName(url: string): string {\n  return url.split('series/')[1];\n}\n\nexport function createPartialFileName(url: string, offsets?: { startByte: number; endByte: number }): string {\n  const seriesInstanceUID = url.split('series/')[1].split('.tar')[0];\n  const offsetPart = `${offsets ? `_${offsets?.startByte}_${offsets?.endByte}` : ''}`;\n  return `${FILE_SYSTEM_ROUTES.Partial}/${seriesInstanceUID}${offsetPart}.dcm`;\n}\n","import { CustomError } from '../../classes/customClasses';\nimport { createStreamingFileName, readFile, writeFile } from '../../fileAccessSystemUtils';\n\nconst fileStreaming = {\n  maxFetchSize: 4 * 1024 * 1024 * 1024, // 4GB\n  fetchedSize: 0,\n\n  setMaxFetchSize(size: number): void {\n    if (size > 0) {\n      this.maxFetchSize = size;\n    }\n  },\n\n  decreaseFetchedSize(size: number): void {\n    if (size > 0 && size <= this.fetchedSize) {\n      this.fetchedSize -= size;\n    }\n  },\n\n  async stream(\n    args: {\n      url: string;\n      headers?: Record<string, string>;\n      useSharedArrayBuffer?: boolean;\n      directoryHandle?: FileSystemDirectoryHandle;\n    },\n    callBack: (data: {\n      url: string;\n      position: number;\n      isAppending?: boolean;\n      fileArraybuffer?: Uint8Array;\n      chunk?: Uint8Array;\n    }) => void\n  ): Promise<Uint8Array | void> {\n    const { url, headers, useSharedArrayBuffer, directoryHandle } = args;\n    const controller = new AbortController();\n    let sharedArraybuffer: SharedArrayBuffer | null = null;\n    let fileArraybuffer: Uint8Array | null = null;\n\n    try {\n      const fileName = createStreamingFileName(url);\n      if (directoryHandle) {\n        const file = await readFile(directoryHandle, fileName);\n        if (file) {\n          callBack({ url, position: file.byteLength, fileArraybuffer: new Uint8Array(file) });\n          return;\n        }\n      }\n\n      const response = await fetch(url, {\n        headers: { ...headers },\n        signal: controller.signal\n      });\n\n      if (!response.ok) {\n        throw new CustomError(`HTTP error! status: ${response.status}`);\n      }\n\n      const reader = response.body?.getReader();\n      if (!reader) {\n        throw new CustomError('Failed to get reader from response body');\n      }\n\n      let result: ReadableStreamReadResult<Uint8Array>;\n      let completed = false;\n      const totalLength = parseInt(response.headers.get('Content-Length') || '0', 10);\n      const firstChunk = await reader.read();\n      completed = firstChunk.done;\n\n      if (!firstChunk.value) {\n        throw new CustomError('The fetched chunks does not have value');\n      }\n\n      if (!completed) {\n        let position = firstChunk.value.length;\n\n        if (this.fetchedSize + position > this.maxFetchSize) {\n          controller.abort();\n          throw new CustomError(`Maximum size(${this.maxFetchSize}) for fetching files reached`);\n        }\n\n        this.fetchedSize += position;\n\n        if (useSharedArrayBuffer) {\n          sharedArraybuffer = new SharedArrayBuffer(totalLength);\n          fileArraybuffer = new Uint8Array(sharedArraybuffer);\n        } else {\n          fileArraybuffer = new Uint8Array(totalLength);\n        }\n        fileArraybuffer.set(firstChunk.value);\n        callBack({ url, position, fileArraybuffer });\n\n        while (!completed) {\n          result = await reader.read();\n\n          if (result.done) {\n            completed = true;\n            continue;\n          }\n\n          const chunk = result.value;\n\n          if (this.fetchedSize + chunk.length > this.maxFetchSize) {\n            sharedArraybuffer = null;\n            fileArraybuffer = null;\n            controller.abort();\n            throw new CustomError(`Maximum size(${this.maxFetchSize}) for fetching files reached`);\n          }\n\n          this.fetchedSize += chunk.length;\n          fileArraybuffer.set(chunk, position);\n          position += chunk.length;\n\n          callBack({\n            isAppending: true,\n            url,\n            position: position,\n            chunk: !useSharedArrayBuffer ? chunk : undefined\n          });\n        }\n\n        if (directoryHandle) {\n          writeFile(directoryHandle, fileName, fileArraybuffer.slice().buffer);\n        }\n      }\n    } catch (error) {\n      const streamingError = new CustomError(\n        'fileStreaming.ts: ' + (error as CustomError).message || 'An error occured when streaming'\n      );\n      console.error(streamingError.message, error);\n      throw streamingError;\n    } finally {\n      sharedArraybuffer = null;\n      fileArraybuffer = null;\n      controller.abort();\n    }\n  }\n};\n\nexport default fileStreaming;\n","import { expose } from 'comlink';\nimport fileStreaming from '../scripts/fileStreaming';\n\nconst fileStreamingWorker = {\n  ...fileStreaming,\n  stream: (args: any) => fileStreaming.stream(args, 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