cod-dicomweb-server 1.2.4 → 1.3.0

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "cod-dicomweb-server",
   "title": "COD Dicomweb server",
-  "version": "1.2.4",
+  "version": "1.3.0",
   "private": false,
   "description": "A wadors server proxy that get data from a Cloud Optimized Dicom format.",
   "main": "dist/umd/main.js",
@@ -29,11 +29,20 @@
   "scripts": {
     "build:umd": "webpack --config webpack.config.js",
     "build:esm": "rm -rf dist/esm && tsc --project ./tsconfig.json",
-    "build": "yarn build:umd && yarn build:esm",
-    "build:example": "yarn build && webpack --config webpack.config.example.js",
-    "test": "NODE_ENV=test jest --silent --verbose",
+    "build:cjs": "webpack --config webpack.config.cjs.js",
+    "build": "yarn build:umd && yarn build:esm && yarn build:cjs",
+    "build:example": "yarn build:umd && webpack --config webpack.config.example.js",
+    "docker:build": "docker build -t cod-as-a-server .",
+    "docker:run": "docker rm -f CodServer && docker run -d --name CodServer -p 5000:5000 cod-as-a-server:latest",
+    "server": "yarn docker:build && yarn docker:run",
+    "copy:example:codAsAServer": "mkdir -p demo/cornerstone3D/packages/core/examples/cod-dicomweb-server-as-a-server && cp demo/codAsAServer/index.ts demo/cornerstone3D/packages/core/examples/cod-dicomweb-server-as-a-server/",
+    "copy:example:codAsAClient": "mkdir -p demo/cornerstone3D/packages/core/examples/cod-dicomweb-server-as-a-client && cp demo/codAsAClient/index.ts demo/cornerstone3D/packages/core/examples/cod-dicomweb-server-as-a-client/",
+    "demo:server": "yarn server && yarn copy:example:codAsAServer && cd demo/cornerstone3D && yarn run example cod-dicomweb-server-as-a-server",
+    "demo:client": "yarn build:esm && yarn copy:example:codAsAClient && cd demo/cornerstone3D && yarn run example cod-dicomweb-server-as-a-client",
+    "test": "NODE_ENV=test jest --silent --verbose --testPathPattern=src",
     "coverage": "npm run test -- --coverage",
     "benchmark": "webpack serve --config webpack.config.bm.js",
+    "update:submodule:cornerstone3D": "git submodule update --init demo/cornerstone3D && cd demo/cornerstone3D && yarn install && yarn build:all",
     "publish:npm": "npm login && npm publish"
   },
   "devDependencies": {

package/dist/esm/types/workerCustomMessageEvents.d.ts

@@ -1,10 +0,0 @@
-interface FileStreamingMessageEvent extends MessageEvent {
-    data: {
-        url: string;
-        position: number;
-        chunk?: Uint8Array;
-        isAppending?: boolean;
-        fileArraybuffer?: Uint8Array;
-    };
-}
-export type { FileStreamingMessageEvent };

package/dist/esm/webWorker/registerWorkers.d.ts

@@ -1,4 +0,0 @@
-export declare function registerWorkers(workerNames: {
-    fileStreamingWorkerName: string;
-    filePartialWorkerName: string;
-}, maxFetchSize: number): void;

package/dist/esm/webWorker/registerWorkers.js

@@ -1,16 +0,0 @@
-import { getWebWorkerManager } from './workerManager';
-export function registerWorkers(workerNames, maxFetchSize) {
-    const { fileStreamingWorkerName, filePartialWorkerName } = workerNames;
-    const workerManager = getWebWorkerManager();
-    // fileStreaming worker
-    const streamingWorkerFn = () => new Worker(new URL('./workers/fileStreamingWorker', import.meta.url), {
-        name: fileStreamingWorkerName
-    });
-    workerManager.registerWorker(fileStreamingWorkerName, streamingWorkerFn);
-    workerManager.executeTask(fileStreamingWorkerName, 'setMaxFetchSize', maxFetchSize);
-    // filePartial worker
-    const partialWorkerFn = () => new Worker(new URL('./workers/filePartialWorker', import.meta.url), {
-        name: filePartialWorkerName
-    });
-    workerManager.registerWorker(filePartialWorkerName, partialWorkerFn);
-}

package/dist/esm/webWorker/scripts/filePartial.d.ts

@@ -1,7 +0,0 @@
-declare const filePartial: {
-    partial(args: {
-        url: string;
-        headers?: Record<string, string>;
-    }): Promise<ArrayBufferLike | Error>;
-};
-export default filePartial;

package/dist/esm/webWorker/scripts/filePartial.js

@@ -1,11 +0,0 @@
-const filePartial = {
-    async partial(args) {
-        const { url, headers } = args;
-        return fetch(url, { headers })
-            .then((response) => response.arrayBuffer())
-            .catch((error) => {
-            throw new Error('filePartial.ts: Error when fetching file: ' + error?.message);
-        });
-    }
-};
-export default filePartial;

package/dist/esm/webWorker/workerManager.d.ts

@@ -1,10 +0,0 @@
-import type { FileStreamingMessageEvent } from '../types';
-declare class WebWorkerManager {
-    private workerRegistry;
-    registerWorker(name: string, workerFn: () => Worker): void;
-    executeTask(workerName: string, taskName: string, options: Record<string, unknown> | unknown): Promise<void | ArrayBufferLike>;
-    addEventListener(workerName: string, eventType: keyof WorkerEventMap, listener: (evt: FileStreamingMessageEvent | ErrorEvent) => unknown): void;
-    removeEventListener(workerName: string, eventType: keyof WorkerEventMap, listener: (evt: FileStreamingMessageEvent | ErrorEvent) => unknown): void;
-}
-export declare function getWebWorkerManager(): WebWorkerManager;
-export {};

package/dist/esm/webWorker/workers/filePartialWorker.js

@@ -1,3 +0,0 @@
-import { expose } from 'comlink';
-import filePartial from '../scripts/filePartial';
-expose(filePartial);

package/dist/esm/webWorker/workers/fileStreamingWorker.js

@@ -1,3 +0,0 @@
-import { expose } from 'comlink';
-import fileStreaming from '../scripts/fileStreaming';
-expose(fileStreaming);

package/dist/umd/16.js

@@ -1,19 +0,0 @@
-/*!
- * 
- * cod-dicomweb-server v1.2.4
- * git+https://github.com/gradienthealth/cod-dicomweb-server.git
- *
- *   Copyright (c) Adithyan Dinesh and project contributors.
- *
- *   This source code is licensed under the MIT license found in the
- *   LICENSE file in the root directory of this source tree.
- *
- */
-!function(t,e){if("object"==typeof exports&&"object"==typeof module)module.exports=e();else if("function"==typeof define&&define.amd)define([],e);else{var r=e();for(var n in r)("object"==typeof exports?exports:t)[n]=r[n]}}(self,(()=>(()=>{"use strict";
-/**
- * @license
- * Copyright 2019 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
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package/dist/umd/170.js

@@ -1,19 +0,0 @@
-/*!
- * 
- * cod-dicomweb-server v1.2.4
- * git+https://github.com/gradienthealth/cod-dicomweb-server.git
- *
- *   Copyright (c) Adithyan Dinesh and project contributors.
- *
- *   This source code is licensed under the MIT license found in the
- *   LICENSE file in the root directory of this source tree.
- *
- */
-!function(e,t){if("object"==typeof exports&&"object"==typeof module)module.exports=t();else if("function"==typeof define&&define.amd)define([],t);else{var r=t();for(var n in r)("object"==typeof exports?exports:e)[n]=r[n]}}(self,(()=>(()=>{"use strict";
-/**
- * @license
- * Copyright 2019 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */
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webpackUniversalModuleDefinition(root, factory) {\n\tif(typeof exports === 'object' && typeof module === 'object')\n\t\tmodule.exports = factory();\n\telse if(typeof define === 'function' && define.amd)\n\t\tdefine([], factory);\n\telse {\n\t\tvar a = factory();\n\t\tfor(var i in a) (typeof exports === 'object' ? exports : root)[i] = a[i];\n\t}\n})(self, () => {\nreturn ","/**\n * @license\n * Copyright 2019 Google LLC\n * SPDX-License-Identifier: Apache-2.0\n */\nconst proxyMarker = Symbol(\"Comlink.proxy\");\nconst createEndpoint = Symbol(\"Comlink.endpoint\");\nconst releaseProxy = Symbol(\"Comlink.releaseProxy\");\nconst finalizer = Symbol(\"Comlink.finalizer\");\nconst throwMarker = Symbol(\"Comlink.thrown\");\nconst isObject = (val) => (typeof val === \"object\" && val !== null) || typeof val === \"function\";\n/**\n * Internal transfer handle to handle objects marked to proxy.\n */\nconst proxyTransferHandler = {\n    canHandle: (val) => isObject(val) && val[proxyMarker],\n    serialize(obj) {\n        const { port1, port2 } = new MessageChannel();\n        expose(obj, port1);\n        return [port2, [port2]];\n    },\n    deserialize(port) {\n        port.start();\n        return wrap(port);\n    },\n};\n/**\n * Internal transfer handler to handle thrown exceptions.\n */\nconst throwTransferHandler = {\n    canHandle: (value) => isObject(value) && throwMarker in value,\n    serialize({ value }) {\n        let serialized;\n        if (value instanceof Error) {\n            serialized = {\n                isError: true,\n                value: {\n                    message: value.message,\n                    name: value.name,\n                    stack: value.stack,\n                },\n            };\n        }\n        else {\n            serialized = { isError: false, value };\n        }\n        return [serialized, []];\n    },\n    deserialize(serialized) {\n        if (serialized.isError) {\n            throw Object.assign(new Error(serialized.value.message), serialized.value);\n        }\n        throw serialized.value;\n    },\n};\n/**\n * Allows customizing the serialization of certain values.\n */\nconst transferHandlers = new Map([\n    [\"proxy\", proxyTransferHandler],\n    [\"throw\", throwTransferHandler],\n]);\nfunction isAllowedOrigin(allowedOrigins, origin) {\n    for (const allowedOrigin of allowedOrigins) {\n        if (origin === allowedOrigin || allowedOrigin === \"*\") {\n            return true;\n        }\n        if (allowedOrigin instanceof RegExp && allowedOrigin.test(origin)) {\n            return true;\n        }\n    }\n    return false;\n}\nfunction expose(obj, ep = globalThis, allowedOrigins = [\"*\"]) {\n    ep.addEventListener(\"message\", function callback(ev) {\n        if (!ev || !ev.data) {\n            return;\n        }\n        if (!isAllowedOrigin(allowedOrigins, ev.origin)) {\n            console.warn(`Invalid origin '${ev.origin}' for comlink proxy`);\n            return;\n        }\n        const { id, type, path } = Object.assign({ path: [] }, ev.data);\n        const argumentList = (ev.data.argumentList || []).map(fromWireValue);\n        let returnValue;\n        try {\n            const parent = path.slice(0, -1).reduce((obj, prop) => obj[prop], obj);\n            const rawValue = path.reduce((obj, prop) => obj[prop], obj);\n            switch (type) {\n                case \"GET\" /* MessageType.GET */:\n                    {\n                        returnValue = rawValue;\n                    }\n                    break;\n                case \"SET\" /* MessageType.SET */:\n                    {\n                        parent[path.slice(-1)[0]] = fromWireValue(ev.data.value);\n                        returnValue = true;\n                    }\n                    break;\n                case \"APPLY\" /* MessageType.APPLY */:\n                    {\n                        returnValue = rawValue.apply(parent, argumentList);\n                    }\n                    break;\n                case \"CONSTRUCT\" /* MessageType.CONSTRUCT */:\n                    {\n                        const value = new rawValue(...argumentList);\n                        returnValue = proxy(value);\n                    }\n                    break;\n                case \"ENDPOINT\" /* MessageType.ENDPOINT */:\n                    {\n                        const { port1, port2 } = new MessageChannel();\n                        expose(obj, port2);\n                        returnValue = transfer(port1, [port1]);\n                    }\n                    break;\n                case \"RELEASE\" /* MessageType.RELEASE */:\n                    {\n                        returnValue = undefined;\n                    }\n                    break;\n                default:\n                    return;\n            }\n        }\n        catch (value) {\n            returnValue = { value, [throwMarker]: 0 };\n        }\n        Promise.resolve(returnValue)\n            .catch((value) => {\n            return { value, [throwMarker]: 0 };\n        })\n            .then((returnValue) => {\n            const [wireValue, transferables] = toWireValue(returnValue);\n            ep.postMessage(Object.assign(Object.assign({}, wireValue), { id }), transferables);\n            if (type === \"RELEASE\" /* MessageType.RELEASE */) {\n                // detach and deactive after sending release response above.\n                ep.removeEventListener(\"message\", callback);\n                closeEndPoint(ep);\n                if (finalizer in obj && typeof obj[finalizer] === \"function\") {\n                    obj[finalizer]();\n                }\n            }\n        })\n            .catch((error) => {\n            // Send Serialization Error To Caller\n            const [wireValue, transferables] = toWireValue({\n                value: new TypeError(\"Unserializable return value\"),\n                [throwMarker]: 0,\n            });\n            ep.postMessage(Object.assign(Object.assign({}, wireValue), { id }), transferables);\n        });\n    });\n    if (ep.start) {\n        ep.start();\n    }\n}\nfunction isMessagePort(endpoint) {\n    return endpoint.constructor.name === \"MessagePort\";\n}\nfunction closeEndPoint(endpoint) {\n    if (isMessagePort(endpoint))\n        endpoint.close();\n}\nfunction wrap(ep, target) {\n    const pendingListeners = new Map();\n    ep.addEventListener(\"message\", function handleMessage(ev) {\n        const { data } = ev;\n        if (!data || !data.id) {\n            return;\n        }\n        const resolver = pendingListeners.get(data.id);\n        if (!resolver) {\n            return;\n        }\n        try {\n            resolver(data);\n        }\n        finally {\n            pendingListeners.delete(data.id);\n        }\n    });\n    return createProxy(ep, pendingListeners, [], target);\n}\nfunction throwIfProxyReleased(isReleased) {\n    if (isReleased) {\n        throw new Error(\"Proxy has been released and is not useable\");\n    }\n}\nfunction releaseEndpoint(ep) {\n    return requestResponseMessage(ep, new Map(), {\n        type: \"RELEASE\" /* MessageType.RELEASE */,\n    }).then(() => {\n        closeEndPoint(ep);\n    });\n}\nconst proxyCounter = new WeakMap();\nconst proxyFinalizers = \"FinalizationRegistry\" in globalThis &&\n    new FinalizationRegistry((ep) => {\n        const newCount = (proxyCounter.get(ep) || 0) - 1;\n        proxyCounter.set(ep, newCount);\n        if (newCount === 0) {\n            releaseEndpoint(ep);\n        }\n    });\nfunction registerProxy(proxy, ep) {\n    const newCount = (proxyCounter.get(ep) || 0) + 1;\n    proxyCounter.set(ep, newCount);\n    if (proxyFinalizers) {\n        proxyFinalizers.register(proxy, ep, proxy);\n    }\n}\nfunction unregisterProxy(proxy) {\n    if (proxyFinalizers) {\n        proxyFinalizers.unregister(proxy);\n    }\n}\nfunction createProxy(ep, pendingListeners, path = [], target = function () { }) {\n    let isProxyReleased = false;\n    const proxy = new Proxy(target, {\n        get(_target, prop) {\n            throwIfProxyReleased(isProxyReleased);\n            if (prop === releaseProxy) {\n                return () => {\n                    unregisterProxy(proxy);\n                    releaseEndpoint(ep);\n                    pendingListeners.clear();\n                    isProxyReleased = true;\n                };\n            }\n            if (prop === \"then\") {\n                if (path.length === 0) {\n                    return { then: () => proxy };\n                }\n                const r = requestResponseMessage(ep, pendingListeners, {\n                    type: \"GET\" /* MessageType.GET */,\n                    path: path.map((p) => p.toString()),\n                }).then(fromWireValue);\n                return r.then.bind(r);\n            }\n            return createProxy(ep, pendingListeners, [...path, prop]);\n        },\n        set(_target, prop, rawValue) {\n            throwIfProxyReleased(isProxyReleased);\n            // FIXME: ES6 Proxy Handler `set` methods are supposed to return a\n            // boolean. To show good will, we return true asynchronously ¯\\_(ツ)_/¯\n            const [value, transferables] = toWireValue(rawValue);\n            return requestResponseMessage(ep, pendingListeners, {\n                type: \"SET\" /* MessageType.SET */,\n                path: [...path, prop].map((p) => p.toString()),\n                value,\n            }, transferables).then(fromWireValue);\n        },\n        apply(_target, _thisArg, rawArgumentList) {\n            throwIfProxyReleased(isProxyReleased);\n            const last = path[path.length - 1];\n            if (last === createEndpoint) {\n                return requestResponseMessage(ep, pendingListeners, {\n                    type: \"ENDPOINT\" /* MessageType.ENDPOINT */,\n                }).then(fromWireValue);\n            }\n            // We just pretend that `bind()` didn’t happen.\n            if (last === \"bind\") {\n                return createProxy(ep, pendingListeners, path.slice(0, -1));\n            }\n            const [argumentList, transferables] = processArguments(rawArgumentList);\n            return requestResponseMessage(ep, pendingListeners, {\n                type: \"APPLY\" /* MessageType.APPLY */,\n                path: path.map((p) => p.toString()),\n                argumentList,\n            }, transferables).then(fromWireValue);\n        },\n        construct(_target, rawArgumentList) {\n            throwIfProxyReleased(isProxyReleased);\n            const [argumentList, transferables] = processArguments(rawArgumentList);\n            return requestResponseMessage(ep, pendingListeners, {\n                type: \"CONSTRUCT\" /* MessageType.CONSTRUCT */,\n                path: path.map((p) => p.toString()),\n                argumentList,\n            }, transferables).then(fromWireValue);\n        },\n    });\n    registerProxy(proxy, ep);\n    return proxy;\n}\nfunction myFlat(arr) {\n    return Array.prototype.concat.apply([], arr);\n}\nfunction processArguments(argumentList) {\n    const processed = argumentList.map(toWireValue);\n    return [processed.map((v) => v[0]), myFlat(processed.map((v) => v[1]))];\n}\nconst transferCache = new WeakMap();\nfunction transfer(obj, transfers) {\n    transferCache.set(obj, transfers);\n    return obj;\n}\nfunction proxy(obj) {\n    return Object.assign(obj, { [proxyMarker]: true });\n}\nfunction windowEndpoint(w, context = globalThis, targetOrigin = \"*\") {\n    return {\n        postMessage: (msg, transferables) => w.postMessage(msg, targetOrigin, transferables),\n        addEventListener: context.addEventListener.bind(context),\n        removeEventListener: context.removeEventListener.bind(context),\n    };\n}\nfunction toWireValue(value) {\n    for (const [name, handler] of transferHandlers) {\n        if (handler.canHandle(value)) {\n            const [serializedValue, transferables] = handler.serialize(value);\n            return [\n                {\n                    type: \"HANDLER\" /* WireValueType.HANDLER */,\n                    name,\n                    value: serializedValue,\n                },\n                transferables,\n            ];\n        }\n    }\n    return [\n        {\n            type: \"RAW\" /* WireValueType.RAW */,\n            value,\n        },\n        transferCache.get(value) || [],\n    ];\n}\nfunction fromWireValue(value) {\n    switch (value.type) {\n        case \"HANDLER\" /* WireValueType.HANDLER */:\n            return transferHandlers.get(value.name).deserialize(value.value);\n        case \"RAW\" /* WireValueType.RAW */:\n            return value.value;\n    }\n}\nfunction requestResponseMessage(ep, pendingListeners, msg, transfers) {\n    return new Promise((resolve) => {\n        const id = generateUUID();\n        pendingListeners.set(id, resolve);\n        if (ep.start) {\n            ep.start();\n        }\n        ep.postMessage(Object.assign({ id }, msg), transfers);\n    });\n}\nfunction generateUUID() {\n    return new Array(4)\n        .fill(0)\n        .map(() => Math.floor(Math.random() * Number.MAX_SAFE_INTEGER).toString(16))\n        .join(\"-\");\n}\n\nexport { createEndpoint, expose, finalizer, proxy, proxyMarker, releaseProxy, transfer, transferHandlers, windowEndpoint, wrap };\n//# sourceMappingURL=comlink.mjs.map\n","const fileStreaming = {\n  maxFetchSize: 4 * 1024 * 1024 * 1024, // 4GB\n  fetchedSize: 0,\n\n  setMaxFetchSize(size: number): void {\n    if (size > 0) {\n      this.maxFetchSize = size;\n    }\n  },\n\n  decreaseFetchedSize(size: number): void {\n    if (size > 0 && size <= this.fetchedSize) {\n      this.fetchedSize -= size;\n    }\n  },\n\n  async stream(args: { url: string; headers?: Record<string, string>; useSharedArrayBuffer?: boolean }): Promise<void> {\n    const { url, headers, useSharedArrayBuffer } = args;\n    const controller = new AbortController();\n    let sharedArraybuffer: SharedArrayBuffer | null = null;\n    let fileArraybuffer: Uint8Array | null = null;\n\n    try {\n      const response = await fetch(url, {\n        headers: { ...headers },\n        signal: controller.signal\n      });\n\n      if (!response.ok) {\n        throw new Error(`HTTP error! status: ${response.status}`);\n      }\n\n      const reader = response.body?.getReader();\n      if (!reader) {\n        throw new Error('Failed to get reader from response body');\n      }\n\n      let result: ReadableStreamReadResult<Uint8Array>;\n      let completed = false;\n      const totalLength = parseInt(response.headers.get('Content-Length') || '0', 10);\n      const firstChunk = await reader.read();\n      completed = firstChunk.done;\n\n      if (!firstChunk.value) {\n        throw new Error('The fetched chunks does not have value');\n      }\n\n      if (!completed) {\n        let position = firstChunk.value.length;\n\n        if (this.fetchedSize + position > this.maxFetchSize) {\n          controller.abort();\n          throw new Error(`Maximum size(${this.maxFetchSize}) for fetching files reached`);\n        }\n\n        this.fetchedSize += position;\n\n        if (useSharedArrayBuffer) {\n          sharedArraybuffer = new SharedArrayBuffer(totalLength);\n          fileArraybuffer = new Uint8Array(sharedArraybuffer);\n        } else {\n          fileArraybuffer = new Uint8Array(totalLength);\n        }\n        fileArraybuffer.set(firstChunk.value);\n        postMessage({ url, position, fileArraybuffer });\n\n        while (!completed) {\n          result = await reader.read();\n\n          if (result.done) {\n            completed = true;\n            continue;\n          }\n\n          const chunk = result.value;\n\n          if (this.fetchedSize + chunk.length > this.maxFetchSize) {\n            sharedArraybuffer = null;\n            fileArraybuffer = null;\n            controller.abort();\n            throw new Error(`Maximum size(${this.maxFetchSize}) for fetching files reached`);\n          }\n\n          this.fetchedSize += chunk.length;\n          fileArraybuffer.set(chunk, position);\n          position += chunk.length;\n\n          postMessage({\n            isAppending: true,\n            url,\n            position: position,\n            chunk: !useSharedArrayBuffer ? chunk : null\n          });\n        }\n      }\n    } catch (error) {\n      const streamingError = new Error('fileStreaming.ts: ' + (error as Error).message || 'An error occured when streaming');\n      console.error(streamingError.message, error);\n      throw streamingError;\n    } finally {\n      sharedArraybuffer = null;\n      fileArraybuffer = null;\n      controller.abort();\n    }\n  }\n};\n\nexport default fileStreaming;\n","import { expose } from 'comlink';\nimport fileStreaming from 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